lalsuite 7.26.2.dev20251218__cp314-cp314t-manylinux_2_28_x86_64.whl

lalsuite-7.26.2.dev20251218.data/scripts/imrtgr_imr_consistency_test

@@ -0,0 +1,796 @@
+#!python
+"""
+Perform the consistency check between the inspiral and ringdown estimates of the mass and spin of the final
+black hole in a binary black hole merger.
+
+P. Ajith, Abhirup Ghosh, Archisman Ghosh, 2015-09-18
+
+$Id:$
+"""
+
+import matplotlib as mpl
+mpl.use('Agg')
+import matplotlib.pyplot as plt
+import numpy as np
+import scipy
+from scipy import interpolate
+from optparse import OptionParser
+import time, os
+import lalinference.imrtgr.imrtgrutils as tgr
+import pickle, gzip
+import sys
+from lalinference import git_version
+
+from scipy.stats import gaussian_kde   #rahul: for KDE implementation
+
+from matplotlib import rc
+import matplotlib
+matplotlib.rc('text.latex', preamble=r'\usepackage{txfonts}')
+
+rc('text', usetex=True)
+rc('font', family='serif')
+rc('font', serif='times')
+rc('mathtext', default='sf')
+rc("lines", markeredgewidth=1)
+rc("lines", linewidth=2)
+rc('axes', labelsize=10)
+rc("axes", linewidth=0.5)
+rc('xtick', labelsize=8)
+rc('ytick', labelsize=8)
+rc('legend', fontsize=10)
+rc('xtick.major', pad=6)
+rc('ytick.major', pad=6)
+rc('xtick.minor', size=5)
+rc('ytick.minor', size=5)
+
+def set_tick_sizes(ax, major, minor):
+  for l in ax.get_xticklines() + ax.get_yticklines():
+    l.set_markersize(major)
+  for tick in ax.xaxis.get_minor_ticks() + ax.yaxis.get_minor_ticks():
+    tick.tick1line.set_markersize(minor)
+    tick.tick2line.set_markersize(minor)
+  ax.xaxis.LABELPAD=10.
+  ax.xaxis.OFFSETTEXTPAD=10.
+
+# Module for confidence calculations
+class confidence(object):
+  def __init__(self, counts):
+    # Sort in descending order in frequency
+    self.counts_sorted = np.sort(counts.flatten())[::-1]
+    # Get a normalized cumulative distribution from the mode
+    self.norm_cumsum_counts_sorted = np.cumsum(self.counts_sorted) / np.sum(counts)
+    # Set interpolations between heights, bins and levels
+    self._set_interp()
+  def _set_interp(self):
+    self._length = len(self.counts_sorted)
+    # height from index
+    self._height_from_idx = interpolate.interp1d(np.arange(self._length), self.counts_sorted, bounds_error=False, fill_value=0.)
+    # index from height
+    self._idx_from_height = interpolate.interp1d(self.counts_sorted[::-1], np.arange(self._length)[::-1], bounds_error=False, fill_value=self._length)
+    # level from index
+    self._level_from_idx = interpolate.interp1d(np.arange(self._length), self.norm_cumsum_counts_sorted, bounds_error=False, fill_value=1.)
+    # index from level
+    self._idx_from_level = interpolate.interp1d(self.norm_cumsum_counts_sorted, np.arange(self._length), bounds_error=False, fill_value=self._length)
+  def level_from_height(self, height):
+    return self._level_from_idx(self._idx_from_height(height))
+  def height_from_level(self, level):
+    return self._height_from_idx(self._idx_from_level(level))
+
+######################################################################################
+################################# MAIN PROGRAM #######################################
+######################################################################################
+
+if __name__ == '__main__':
+
+  start_time = time.time()
+
+  # read inputs from command line
+  parser = OptionParser()
+  parser.add_option("-i", "--insp-post", dest="insp_post", help="file containing the posterior samples from the PE inspiral run")
+  parser.add_option("-r", "--ring-post", dest="ring_post", help="file containing the posterior samples from the PE ringdown run")
+  parser.add_option("-m", "--imr-post", dest="imr_post", help="file containing the posterior samples from the full PE IMR run")
+  parser.add_option("-f", "--fit-formula", dest="fit_formula", help="fitting formula to be used for the calculation of final mass/spin [options: 'nospin_Pan2011', 'nonprecspin_Healy2014', 'bbh_average_fits_precessing'", default="nonprecspin_Healy2014")
+  parser.add_option("-p", "--mf-chif-prior", dest="prior_Mfchif_file", help="pickle file containing the interpolation object of the prior in (Mf, chif) used in the PE runs", default=None)
+  parser.add_option("-o", "--out-dir", dest="out_dir", help="output directory")
+  parser.add_option("--insp-fhigh", dest="insp_fhigh", help="Upper cutoff freq for the inspiral analysis")
+  parser.add_option("--ring-flow", dest="ring_flow", help="Lower cutoff freq for the ringdown analysis")
+  parser.add_option("--m1-inj", dest="m1_inj", help="injected value of component mass m1 (if this is an injection)")
+  parser.add_option("--m2-inj", dest="m2_inj", help="injected value of component mass m2 (if this is an injection)")
+  parser.add_option("--chi1-inj", dest="chi1_inj", help="injected value of spin magnitude of mass m1 (if this is an injection)")
+  parser.add_option("--chi2-inj", dest="chi2_inj", help="injected value of spin magnitude of mass m2 (if this is an injection)")
+  parser.add_option("--chi1z-inj", dest="chi1z_inj", help="injected value of z-component of spin of mass m1 (if this is an injection)")
+  parser.add_option("--chi2z-inj", dest="chi2z_inj", help="injected value of z-component of spin of mass m2 (if this is an injection)")
+  parser.add_option("--phi12-inj", dest="phi12_inj", help="injected value of the azimuth angle of (hats2 - hats1) from vecL (if this is an injection)", default=0.)
+  parser.add_option("-w", "--waveform", dest="waveform", help="waveform used for recovery")
+  parser.add_option("-d", "--debug-plots", dest="debug_plots", help="debug plots")
+  parser.add_option("--N_bins", type="int", dest="N_bins", default=201, help="number of bins (default=201)")
+  parser.add_option("--dMfbyMf_lim", type="float", dest="dMfbyMf_lim", default=1., help="absolute value of limit for range of dMfbyMf_vec, defined as [-dMfbyMf_lim, +dMfbyMf_lim]")
+  parser.add_option("--dchifbychif_lim", type="float", dest="dchifbychif_lim", default=1., help="absolute value of limit for range of dchifbychif_vec, defined as [-dchifbychif_lim, +dchifbychif_lim]")
+  parser.add_option("--use_KDE", type="int", dest="MfafKDE", help="use KDE or not after getting samples of Mf, af")
+  parser.add_option("-s", "--pepostproc", dest="pepostproc", default= "cbcbayespostproc", help="package used to generate summary webpage to visualize the output [options: 'cbcbayespostproc', 'pesummary']")
+
+  (options, args) = parser.parse_args()
+  MfafKDE = options.MfafKDE
+  insp_post = options.insp_post
+  ring_post = options.ring_post
+  imr_post = options.imr_post
+  prior_Mfchif_file = options.prior_Mfchif_file
+  out_dir = options.out_dir
+  fit_formula = options.fit_formula
+  debug_plots = options.debug_plots
+  pepostproc = options.pepostproc
+  if options.insp_fhigh is not None:
+    insp_fhigh = float(options.insp_fhigh)
+  else:
+    print('Inspiral cutoff freq not provided. To have it displayed on the results page, please pass command line option --insp-fhigh.')
+    insp_fhigh = np.nan
+  if options.ring_flow is not None:
+    ring_flow = float(options.ring_flow)
+  else:
+    print('Ringdown cutoff freq not provided. To have it displayed on the results page, please pass command line option --ring-flow.')
+    ring_flow = np.nan
+  waveform = options.waveform
+  if waveform is None:
+    print('Recovery approximant not provided. To have it displayed on the results page, please pass command line option --waveform.')
+
+  N_bins = int(options.N_bins) # Number of grid points along either axis (dMfbyMf, dchifbychif) for computation of the posteriors
+  dMfbyMf_lim = float(options.dMfbyMf_lim)
+  dchifbychif_lim = float(options.dchifbychif_lim)
+  lalinference_datadir = os.getenv('LALINFERENCE_DATADIR')
+
+  # create output directory and copy the script
+  os.system('mkdir -p %s' %out_dir)
+  os.system('mkdir -p %s/data' %out_dir)
+  os.system('mkdir -p %s/img' %out_dir)
+  os.system('cp %s %s' %(__file__, out_dir))
+  os.system('cp %s %s/'%(os.path.join(lalinference_datadir, 'imrtgr_webpage_templates/*.*'), out_dir))
+
+  # creating file to save the run command
+  run_command = open('%s/command.txt'%(out_dir),'w')
+  for arg in sys.argv:
+    run_command.write('%s\n' %arg)
+  run_command.write("\n")
+  run_command.write("\n")
+  run_command.write("%s"%git_version.verbose_msg)
+  run_command.close()
+
+  # creating soft links for PE results
+  if pepostproc == 'cbcbayespostproc':
+    insp_post_link = insp_post
+    ring_post_link = ring_post
+    imr_post_link = imr_post
+  # posterior samples data file generated by pesummary is stored in
+  # <path to summary directory>/samples/<posterior_samples>.dat
+  # need to go to the parent directory before creating soft link
+  elif pepostproc == 'pesummary':
+    insp_post_link = os.path.realpath(os.path.dirname(insp_post))
+    ring_post_link = os.path.realpath(os.path.dirname(ring_post))
+    imr_post_link = os.path.realpath(os.path.dirname(imr_post))
+    os.system("sed -i 's/posplots/home/g' %s/result.html"%out_dir)
+  else:
+    raise ValueError('Package to generate summary webpage unknown !')
+
+  insp_posplots = os.path.realpath(os.path.dirname(insp_post_link))
+  ring_posplots = os.path.realpath(os.path.dirname(ring_post_link))
+  imr_posplots = os.path.realpath(os.path.dirname(imr_post_link))
+
+  insp_target = os.path.join(out_dir, 'pe_insp')
+  ring_target = os.path.join(out_dir, 'pe_ring')
+  imr_target = os.path.join(out_dir, 'pe_imr')
+
+  if insp_posplots != insp_target:
+    if os.path.islink(insp_target):
+      print('... removing existing link %s'%(insp_target))
+      os.system('rm %s'%(insp_target))
+    print('... linking %s to %s' %(insp_posplots, insp_target))
+    os.system('ln -s %s %s' %(insp_posplots, insp_target))
+  if ring_posplots != ring_target:
+    if os.path.islink(ring_target):
+      print('... removing existing link %s'%(ring_target))
+      os.system('rm %s'%(ring_target))
+    print('... linking %s to %s' %(ring_posplots, ring_target))
+    os.system('ln -s %s %s' %(ring_posplots, ring_target))
+  if imr_posplots != imr_target:
+    if os.path.islink(imr_target):
+      print('... removing existing link %s'%(imr_target))
+      os.system('rm %s'%(imr_target))
+    print('... linking %s to %s' %(imr_posplots, imr_target))
+    os.system('ln -s %s %s' %(imr_posplots, imr_target))
+
+  # read the injection mass parameters if this is an injection
+  m1_inj = options.m1_inj
+  m2_inj = options.m2_inj
+  chi1_inj = options.chi1_inj
+  chi2_inj = options.chi2_inj
+  chi1z_inj = options.chi1z_inj
+  chi2z_inj = options.chi2z_inj
+  phi12_inj = options.phi12_inj
+
+  if m1_inj == None or m2_inj == None or chi1_inj == None or chi2_inj == None or chi1z_inj == None or chi2z_inj == None or phi12_inj == None:
+    plot_injection_lines = False
+  else:
+    m1_inj = float(m1_inj)
+    m2_inj = float(m2_inj)
+    chi1_inj = float(chi1_inj)
+    chi2_inj = float(chi2_inj)
+    chi1z_inj = float(chi1z_inj)
+    chi2z_inj = float(chi2z_inj)
+    phi12_inj = float(phi12_inj)
+    plot_injection_lines = True
+    q_inj = m1_inj/m2_inj
+    eta_inj = q_inj/(1.+q_inj)**2.
+    Mf_inj, chif_inj = tgr.calc_final_mass_spin(m1_inj, m2_inj, chi1_inj, chi2_inj, chi1z_inj, chi2z_inj, phi12_inj, fit_formula)
+
+  ###############################################################################################
+  # Read the posteriors from the inspiral, ringdown and imr PE runs (after post-processing)
+  ###############################################################################################
+
+  # parameter names assigned according to the package used to generate summary webpage
+  if pepostproc == 'cbcbayespostproc':
+    m1_id, m2_id, a1_id, a2_id, a1z_id, a2z_id, phi12_id = 'm1', 'm2', 'a1', 'a2', 'a1z', 'a2z', 'phi12'
+  elif pepostproc == 'pesummary':
+    m1_id, m2_id, a1_id, a2_id, a1z_id, a2z_id, phi12_id = 'mass_1', 'mass_2', 'a_1', 'a_2', 'spin_1z', 'spin_2z', 'phi_12'
+  else:
+    raise ValueError('Package to generate summary webpage unknown !')
+
+  # read data from the inspiral posterior file
+  insp_data = np.genfromtxt(insp_post, dtype=None, names=True)
+
+  m1_i, m2_i, chi1_i, chi2_i, chi1z_i, chi2z_i = insp_data[m1_id], insp_data[m2_id], insp_data[a1_id], insp_data[a2_id], insp_data[a1z_id], insp_data[a2z_id]
+  # if there is phi12 in the posterior, read the values.
+  if phi12_id in insp_data.dtype.names:
+    phi12_i = insp_data[phi12_id]
+  else:
+    phi12_i = np.zeros(len(m1_i))
+  # compute the final mass and spin
+  Mf_i, chif_i = tgr.calc_final_mass_spin(m1_i, m2_i, chi1_i, chi2_i, chi1z_i, chi2z_i, phi12_i, fit_formula)
+
+  # read data from the ringdown posterior file
+  ring_data = np.genfromtxt(ring_post, dtype=None, names=True)
+
+  m1_r, m2_r, chi1_r, chi2_r, chi1z_r, chi2z_r = ring_data[m1_id], ring_data[m2_id], ring_data[a1_id], ring_data[a2_id], ring_data[a1z_id], ring_data[a2z_id]
+  # if there is phi12 in the posterior, read the values.
+  if phi12_id in ring_data.dtype.names:
+    phi12_r = ring_data[phi12_id]
+  else:
+    phi12_r = np.zeros(len(m1_r))
+  # compute the final mass and spin
+  Mf_r, chif_r = tgr.calc_final_mass_spin(m1_r, m2_r, chi1_r, chi2_r, chi1z_r, chi2z_r, phi12_r, fit_formula)
+
+  # read data from the IMR posterior file
+  imr_data = np.genfromtxt(imr_post, dtype=None, names=True)
+
+  m1_imr, m2_imr, chi1_imr, chi2_imr, chi1z_imr, chi2z_imr = imr_data[m1_id], imr_data[m2_id], imr_data[a1_id], imr_data[a2_id], imr_data[a1z_id], imr_data[a2z_id]
+  # if there is phi12 in the posterior, read the values.
+  if phi12_id in imr_data.dtype.names:
+    phi12_imr = imr_data[phi12_id]
+  else:
+    phi12_imr = np.zeros(len(m1_imr))
+  # compute the final mass and spin
+  Mf_imr, chif_imr = tgr.calc_final_mass_spin(m1_imr, m2_imr, chi1_imr, chi2_imr, chi1z_imr, chi2z_imr, phi12_imr, fit_formula)
+
+
+  print('... read posteriors')
+  ###############################################################################################
+
+  ###############################################################################################
+  # compute the limits of integration for computing delta_Mf and delta_chif
+  ###############################################################################################
+  Mf_lim = max(abs(np.append(np.append(Mf_i, Mf_r), Mf_imr)))
+  chif_lim = max(abs(np.append(np.append(chif_i, chif_r), chif_imr)))
+
+  # the integral used to compute (Delta Mf, Delta af) has limits from -infinity to +infinity. We
+  # are approximating this by setting the limits to (-Mf_lim to Mf_lim) and (-chif_lim to chif_lim)
+  # where Mf_lim and chif_lim are the max values of Mf and chif where the posteriors have nonzero
+  # support. The scipy.signal.correlate2d function requires arguments x_bins and y_bins that need
+  # to be symmetric around zero
+  Mf_bins = np.linspace(-Mf_lim, Mf_lim, N_bins)
+  chif_bins = np.linspace(-chif_lim, chif_lim, N_bins)
+
+  dMf = np.mean(np.diff(Mf_bins))
+  dchif = np.mean(np.diff(chif_bins))
+
+  Mf_intp = (Mf_bins[:-1] + Mf_bins[1:])/2.
+  chif_intp = (chif_bins[:-1] + chif_bins[1:])/2.
+
+
+  print('useKDE=',MfafKDE)
+  if MfafKDE==1:
+    print('replacing lal P(Mfaf) with its KDE pdf')
+    M_i,C_i=np.meshgrid(Mf_intp,chif_intp)
+
+    joint_data=np.vstack([Mf_i,chif_i]);kernel=gaussian_kde(joint_data)
+    f_i = lambda x,y:kernel.evaluate([x,y])
+    print("for inspiral kernel",kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim]))
+    P_Mfchif_i = np.vectorize(f_i)(M_i,C_i)/kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim])
+
+    joint_data=np.vstack([Mf_r,chif_r]);kernel=gaussian_kde(joint_data)#;M_i,C_i=np.meshgrid(Mf_bins,chif_bins)
+    f_r = lambda x,y:kernel.evaluate([x,y])
+    print("for post-inspiral kernel",kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim]))
+    P_Mfchif_r = np.vectorize(f_r)(M_i,C_i)/kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim])
+
+    joint_data=np.vstack([Mf_imr,chif_imr]);kernel=gaussian_kde(joint_data)#;M_i,C_i=np.meshgrid(Mf_bins,chif_bins)
+    f_imr = lambda x,y:kernel.evaluate([x,y])
+    print("for imr kernel",kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim]))
+    P_Mfchif_imr = np.vectorize(f_imr)(M_i,C_i)/kernel.integrate_box([-Mf_lim,-chif_lim],[Mf_lim,chif_lim])
+
+
+    #rahul: end KDE of Mf,af
+
+  elif MfafKDE==0:
+    print('using default samples, NOKDE')
+    # compute the 2D posterior distributions for the inspiral, ringodwn and IMR analyses
+    P_Mfchif_i, Mf_bins, chif_bins = np.histogram2d(Mf_i, chif_i, bins=(Mf_bins, chif_bins), density=True)
+    P_Mfchif_r, Mf_bins, chif_bins = np.histogram2d(Mf_r, chif_r, bins=(Mf_bins, chif_bins), density=True)
+    P_Mfchif_imr, Mf_bins, chif_bins = np.histogram2d(Mf_imr, chif_imr, bins=(Mf_bins, chif_bins), density=True)
+    # transpose to go from (X,Y) indexing returned by np.histogram2d() to array (i,j) indexing for further
+    # computations. From now onwards, different rows (i) correspond to different values of Mf and different
+    # columns (j) correspond to different values of chif
+    #rahul:Transpose is forbidden if using KDE
+    P_Mfchif_i = P_Mfchif_i.T
+    P_Mfchif_r = P_Mfchif_r.T
+    P_Mfchif_imr = P_Mfchif_imr.T
+    print('computed P_Mfchif without using KDE')
+
+
+  ###############################################################################################
+
+
+  ###############################################################################################
+  # Undo the effect of the prior from the lalinference posterior. Lalinference assumes a        #
+  # uniform prior in component masses. We need to assume a uniform prior in Mf, chif              #
+  ###############################################################################################
+
+  if prior_Mfchif_file is not None:
+
+    os.system('cp %s %s/data'%(prior_Mfchif_file, out_dir))
+
+    # read the interpolation object, reconstruct the data from the interpolation object
+    f = gzip.open(prior_Mfchif_file,'rb')
+    P_Mfchif_pr_interp_obj = pickle.load(f)
+    P_Mfchif_pr = P_Mfchif_pr_interp_obj(Mf_intp, chif_intp)
+
+    # compute the corrected 2D posteriors in Mf and chif by dividing by the prior distribution
+    P_Mfchif_i = P_Mfchif_i/P_Mfchif_pr
+    P_Mfchif_r = P_Mfchif_r/P_Mfchif_pr
+    P_Mfchif_imr = P_Mfchif_imr/P_Mfchif_pr
+
+    # removing nan's
+    P_Mfchif_i[np.isnan(P_Mfchif_i)] = 0.
+    P_Mfchif_r[np.isnan(P_Mfchif_r)] = 0.
+    P_Mfchif_imr[np.isnan(P_Mfchif_imr)] = 0.
+
+    # removing infinities
+    P_Mfchif_i[np.isinf(P_Mfchif_i)] = 0.
+    P_Mfchif_r[np.isinf(P_Mfchif_r)] = 0.
+    P_Mfchif_imr[np.isinf(P_Mfchif_imr)] = 0.
+
+    print('... computed (prior) corrected posteriors')
+
+  ################################################################################################
+  # compute the posterior of (delta_Mf/Mf, delta_chif/chif)
+  ################################################################################################
+
+  # compute interpolation objects for the Mf,chif posterior and delta_Mf and delta_chif posterior
+  P_Mfchif_i_interp_object = scipy.interpolate.interp2d(Mf_intp, chif_intp, P_Mfchif_i, fill_value=0., bounds_error=False)
+  P_Mfchif_r_interp_object = scipy.interpolate.interp2d(Mf_intp, chif_intp, P_Mfchif_r, fill_value=0., bounds_error=False)
+
+  # defining limits of delta_Mf/Mf and delta_chif/chif.
+  dMfbyMf_vec = np.linspace(-dMfbyMf_lim, dMfbyMf_lim, N_bins)
+  dchifbychif_vec = np.linspace(-dchifbychif_lim, dchifbychif_lim, N_bins)
+
+  # compute the P(dMf/Mf, dchif/chif) by evaluating the integral
+  diff_dMfbyMf = np.mean(np.diff(dMfbyMf_vec))
+  diff_dchifbychif = np.mean(np.diff(dchifbychif_vec))
+  P_dMfbyMf_dchifbychif = np.zeros(shape=(N_bins,N_bins))
+
+  # compute the posterior on the fractional deviation parameters (delta_Mf/Mf, delta_chif/chif).
+  # Approximate the integral in Eq.(6) of the document LIGO-P1500185-v5 by a discrete sum
+  for i, v2 in enumerate(dchifbychif_vec):
+    for j, v1 in enumerate(dMfbyMf_vec):
+      P_dMfbyMf_dchifbychif[i,j] = tgr.calc_sum(Mf_intp, chif_intp, v1, v2, P_Mfchif_i_interp_object, P_Mfchif_r_interp_object)
+
+  # normalization
+  P_dMfbyMf_dchifbychif /= np.sum(P_dMfbyMf_dchifbychif) * diff_dMfbyMf * diff_dchifbychif
+
+  # Marginalization to one-dimensional joint_posteriors
+  P_dMfbyMf = np.sum(P_dMfbyMf_dchifbychif, axis=0) * diff_dchifbychif
+  P_dchifbychif = np.sum(P_dMfbyMf_dchifbychif, axis=1) * diff_dMfbyMf
+
+  # compute the confidence region corresponding to the GR value (delta_Mf/Mf = 0, delta_chif/chif = 0).
+  # the 'confidence' class is defined on top of this script
+  conf_v1v2 = confidence(P_dMfbyMf_dchifbychif)
+  gr_height = P_dMfbyMf_dchifbychif[np.argmin(abs(dMfbyMf_vec)), np.argmin(abs(dchifbychif_vec))] # taking value closest to (0,0)
+  gr_conf_level = conf_v1v2.level_from_height(gr_height)
+  print('... no deviation from GR above %.1f%% confidence level'%(100.*gr_conf_level))
+
+  # creating the parameter table
+  param_table = [['Upper cutoff freq for the inspiral analysis: %s Hz'%insp_fhigh],
+                ['Lower cutoff freq for the ringdown analysis: %s Hz'%ring_flow],
+                ['Waveform approximant: %s'%(waveform)],
+                ['Final mass/spin fitting formula: %s'%(fit_formula)],
+                ['No deviation from GR above %.1f%% confidence level'%(100.*gr_conf_level)]]
+  np.savetxt('%s/summary_table.txt'%(out_dir), np.array(param_table), delimiter='\t', fmt='%s')
+
+  # save results
+  np.savetxt(out_dir+'/data/Mfchif.dat.gz', (Mf_bins,chif_bins))
+  np.savetxt(out_dir+'/data/P_Mfchif_i.dat.gz', P_Mfchif_i)
+  np.savetxt(out_dir+'/data/P_Mfchif_r.dat.gz', P_Mfchif_r)
+  np.savetxt(out_dir+'/data/P_Mfchif_imr.dat.gz', P_Mfchif_imr)
+  np.savetxt(out_dir+'/data/dMfbyMf_vec.dat.gz', dMfbyMf_vec)
+  np.savetxt(out_dir+'/data/dchifbychif_vec.dat.gz', dchifbychif_vec)
+  np.savetxt(out_dir+'/data/P_dMfbyMf_dchifbychif.dat.gz', P_dMfbyMf_dchifbychif)
+  np.savetxt(out_dir+'/data/P_dMfbyMf.dat.gz', P_dMfbyMf)
+  np.savetxt(out_dir+'/data/P_dchifbychif.dat.gz', P_dchifbychif)
+  np.savetxt(out_dir+'/data/GR_confidence.txt', [gr_conf_level])
+
+  #########################################################################################
+
+  #########################################################################################
+  # plotting
+  #########################################################################################
+  #inspiral
+  P_m1m2_i, m1_bins_i, m2_bins_i = np.histogram2d(m1_i, m2_i, bins=50, density=True)
+  P_chi1chi2_i, chi1_bins_i, chi2_bins_i = np.histogram2d(chi1_i, chi2_i, bins=50, density=True)
+
+  P_m1m2_i = P_m1m2_i.T
+  P_chi1chi2_i = P_chi1chi2_i.T
+
+  conf_m1m2_i = confidence(P_m1m2_i)
+  s1_m1m2_i = conf_m1m2_i.height_from_level(0.68)
+  s2_m1m2_i = conf_m1m2_i.height_from_level(0.95)
+
+  conf_chi1chi2_i = confidence(P_chi1chi2_i)
+  s1_chi1chi2_i = conf_chi1chi2_i.height_from_level(0.68)
+  s2_chi1chi2_i = conf_chi1chi2_i.height_from_level(0.95)
+
+  conf_Mfchif_i = confidence(P_Mfchif_i)
+  s1_Mfchif_i = conf_Mfchif_i.height_from_level(0.68)
+  s2_Mfchif_i = conf_Mfchif_i.height_from_level(0.95)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(m1_bins_i, m2_bins_i, tgr.gf(P_m1m2_i), cmap='YlOrBr')
+  plt.contour(m1_bins_i[:-1], m2_bins_i[:-1], tgr.gf(P_m1m2_i), levels=(s2_m1m2_i,s1_m1m2_i), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_i), max(m1_i)])
+  plt.ylim([min(m2_i), max(m2_i)])
+  plt.grid()
+  plt.savefig('%s/img/inspiral_m1m2_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/inspiral_m1m2.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(m1_i, m2_i, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_i), max(m1_i)])
+  plt.ylim([min(m2_i), max(m2_i)])
+  plt.grid()
+  plt.savefig('%s/img/inspiral_m1m2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/inspiral_m1m2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(chi1_bins_i, chi2_bins_i, tgr.gf(P_chi1chi2_i), cmap='YlOrBr')
+  plt.contour(chi1_bins_i[:-1], chi2_bins_i[:-1], tgr.gf(P_chi1chi2_i), levels=(s2_chi1chi2_i,s1_chi1chi2_i), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_i), max(chi1_i)])
+  plt.ylim([min(chi2_i), max(chi2_i)])
+  plt.grid()
+  plt.savefig('%s/img/inspiral_chi1chi2_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/inspiral_chi1chi2.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(chi1_i, chi2_i, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_i), max(chi1_i)])
+  plt.ylim([min(chi2_i), max(chi2_i)])
+  plt.grid()
+  plt.savefig('%s/img/inspiral_chi1chi2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/inspiral_chi1chi2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(Mf_bins, chif_bins, tgr.gf(P_Mfchif_i), cmap='YlOrBr')
+  plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_i), levels=(s2_Mfchif_i,s1_Mfchif_i), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=Mf_inj, ls='--', color='k')
+    plt.axhline(y=chif_inj, ls='--', color='k')
+  plt.xlabel(r'$M_f [M_{\odot}]$')
+  plt.ylabel(r'$\chi_f$')
+  plt.xlim([min(Mf_i), max(Mf_i)])
+  plt.ylim([min(chif_i), max(chif_i)])
+  plt.grid()
+  plt.savefig('%s/img/inspiral_Mfchif_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/inspiral_Mfchif.png'%(out_dir), dpi=300)
+
+
+  #ringdown
+  P_m1m2_r, m1_bins_r, m2_bins_r = np.histogram2d(m1_r, m2_r, bins=50, density=True)
+  P_chi1chi2_r, chi1_bins_r, chi2_bins_r = np.histogram2d(chi1_r, chi2_r, bins=50, density=True)
+
+  P_m1m2_r = P_m1m2_r.T
+  P_chi1chi2_r = P_chi1chi2_r.T
+
+  conf_m1m2_r = confidence(P_m1m2_r)
+  s1_m1m2_r = conf_m1m2_r.height_from_level(0.68)
+  s2_m1m2_r = conf_m1m2_r.height_from_level(0.95)
+
+  conf_chi1chi2_r = confidence(P_chi1chi2_r)
+  s1_chi1chi2_r = conf_chi1chi2_r.height_from_level(0.68)
+  s2_chi1chi2_r = conf_chi1chi2_r.height_from_level(0.95)
+
+  conf_Mfchif_r = confidence(P_Mfchif_r)
+  s1_Mfchif_r = conf_Mfchif_r.height_from_level(0.68)
+  s2_Mfchif_r = conf_Mfchif_r.height_from_level(0.95)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(m1_bins_r, m2_bins_r, tgr.gf(P_m1m2_r), cmap='YlOrBr')
+  plt.contour(m1_bins_r[:-1], m2_bins_r[:-1], tgr.gf(P_m1m2_r), levels=(s2_m1m2_r,s1_m1m2_r), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_r), max(m1_r)])
+  plt.ylim([min(m2_r), max(m2_r)])
+  plt.grid()
+  plt.savefig('%s/img/ringdown_m1m2.png'%(out_dir), dpi=300)
+  plt.savefig('%s/img/ringdown_m1m2_thumb.png'%(out_dir), dpi=72)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(m1_r, m2_r, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_r), max(m1_r)])
+  plt.ylim([min(m2_r), max(m2_r)])
+  plt.grid()
+  plt.savefig('%s/img/ringdown_m1m2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/ringdown_m1m2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(chi1_bins_r, chi2_bins_r, tgr.gf(P_chi1chi2_r), cmap='YlOrBr')
+  plt.contour(chi1_bins_r[:-1], chi2_bins_r[:-1], tgr.gf(P_chi1chi2_r), levels=(s2_chi1chi2_r,s1_chi1chi2_r), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_r), max(chi1_r)])
+  plt.ylim([min(chi2_r), max(chi2_r)])
+  plt.grid()
+  plt.savefig('%s/img/ringdown_chi1chi2_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/ringdown_chi1chi2.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(chi1_r, chi2_r, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_r), max(chi1_r)])
+  plt.ylim([min(chi2_r), max(chi2_r)])
+  plt.grid()
+  plt.savefig('%s/img/ringdown_chi1chi2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/ringdown_chi1chi2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(Mf_bins, chif_bins, tgr.gf(P_Mfchif_r), cmap='YlOrBr')
+  plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_r), levels=(s2_Mfchif_r,s1_Mfchif_r), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=Mf_inj, ls='--', color='k')
+    plt.axhline(y=chif_inj, ls='--', color='k')
+  plt.xlabel(r'$M_f [M_{\odot}]$')
+  plt.ylabel(r'$\chi_f$')
+  plt.xlim([min(Mf_r), max(Mf_r)])
+  plt.ylim([min(chif_r), max(chif_r)])
+  plt.grid()
+  plt.savefig('%s/img/ringdown_Mfchif.png'%(out_dir), dpi=300)
+  plt.savefig('%s/img/ringdown_Mfchif_thumb.png'%(out_dir), dpi=72)
+
+  #IMR
+  P_m1m2_imr, m1_bins_imr, m2_bins_imr = np.histogram2d(m1_imr, m2_imr, bins=50, density=True)
+  P_chi1chi2_imr, chi1_bins_imr, chi2_bins_imr = np.histogram2d(chi1_imr, chi2_imr, bins=50, density=True)
+
+  P_m1m2_imr = P_m1m2_imr.T
+  P_chi1chi2_imr = P_chi1chi2_imr.T
+
+  conf_m1m2_imr = confidence(P_m1m2_imr)
+  s1_m1m2_imr = conf_m1m2_imr.height_from_level(0.68)
+  s2_m1m2_imr = conf_m1m2_imr.height_from_level(0.95)
+
+  conf_chi1chi2_imr = confidence(P_chi1chi2_imr)
+  s1_chi1chi2_imr = conf_chi1chi2_imr.height_from_level(0.68)
+  s2_chi1chi2_imr = conf_chi1chi2_imr.height_from_level(0.95)
+
+  conf_Mfchif_imr = confidence(P_Mfchif_imr)
+  s1_Mfchif_imr = conf_Mfchif_imr.height_from_level(0.68)
+  s2_Mfchif_imr = conf_Mfchif_imr.height_from_level(0.95)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(m1_bins_imr, m2_bins_imr, tgr.gf(P_m1m2_imr), cmap='YlOrBr')
+  plt.contour(m1_bins_imr[:-1], m2_bins_imr[:-1], tgr.gf(P_m1m2_imr), levels=(s2_m1m2_imr,s1_m1m2_imr), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_imr), max(m1_imr)])
+  plt.ylim([min(m2_imr), max(m2_imr)])
+  plt.grid()
+  plt.savefig('%s/img/imr_m1m2.png'%(out_dir), dpi=300)
+  plt.savefig('%s/img/imr_m1m2_thumb.png'%(out_dir), dpi=72)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(m1_imr, m2_imr, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=m1_inj, ls='--', color='k')
+    plt.axhline(y=m2_inj, ls='--', color='k')
+  plt.xlabel(r'$m_1 [M_{\odot}]$')
+  plt.ylabel(r'$m_2 [M_{\odot}]$')
+  plt.xlim([min(m1_imr), max(m1_imr)])
+  plt.ylim([min(m2_imr), max(m2_imr)])
+  plt.grid()
+  plt.savefig('%s/img/imr_m1m2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/imr_m1m2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(chi1_bins_imr, chi2_bins_imr, tgr.gf(P_chi1chi2_imr), cmap='YlOrBr')
+  plt.contour(chi1_bins_imr[:-1], chi2_bins_imr[:-1], tgr.gf(P_chi1chi2_imr), levels=(s2_chi1chi2_imr,s1_chi1chi2_imr), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_imr), max(chi1_imr)])
+  plt.ylim([min(chi2_imr), max(chi2_imr)])
+  plt.grid()
+  plt.savefig('%s/img/imr_chi1chi2_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/imr_chi1chi2.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.plot(chi1_imr, chi2_imr, 'k.', ms=0.1)
+  if plot_injection_lines == True:
+    plt.axvline(x=chi1_inj, ls='--', color='k')
+    plt.axhline(y=chi2_inj, ls='--', color='k')
+  plt.xlabel(r'$\chi _1$')
+  plt.ylabel(r'$\chi _2$')
+  plt.xlim([min(chi1_imr), max(chi1_imr)])
+  plt.ylim([min(chi2_imr), max(chi2_imr)])
+  plt.grid()
+  plt.savefig('%s/img/imr_chi1chi2_scatter_thumb.png'%(out_dir), dpi=72)
+  plt.savefig('%s/img/imr_chi1chi2_scatter.png'%(out_dir), dpi=300)
+
+  plt.figure(figsize=(5,5))
+  plt.pcolormesh(Mf_bins, chif_bins, tgr.gf(P_Mfchif_imr), cmap='YlOrBr')
+  plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_imr), levels=(s2_Mfchif_imr,s1_Mfchif_imr), linewidths=(1,1.5))
+  if plot_injection_lines == True:
+    plt.axvline(x=Mf_inj, ls='--', color='k')
+    plt.axhline(y=chif_inj, ls='--', color='k')
+  plt.xlabel(r'$M_f [M_{\odot}]$')
+  plt.ylabel(r'$\chi_f$')
+  plt.xlim([min(Mf_imr), max(Mf_imr)])
+  plt.ylim([min(chif_imr), max(chif_imr)])
+  plt.grid()
+  plt.savefig('%s/img/imr_Mfchif.png'%(out_dir), dpi=300)
+  plt.savefig('%s/img/imr_Mfchif_thumb.png'%(out_dir), dpi=72)
+
+  # IR overlap
+  plt.figure(figsize=(5,5))
+  CSi = plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_i), levels=(s2_Mfchif_i,s1_Mfchif_i), linewidths=(1,1.5), colors='orange')
+  CSr = plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_r), levels=(s2_Mfchif_r,s1_Mfchif_r), linewidths=(1,1.5), colors='red')
+  CSimr = plt.contour(Mf_bins[:-1], chif_bins[:-1], tgr.gf(P_Mfchif_imr), levels=(s2_Mfchif_imr,s1_Mfchif_imr), linewidths=(1,1.5), colors='k')
+  if plot_injection_lines == True:
+    plt.axvline(x=Mf_inj, ls='--', color='k')
+    plt.axhline(y=chif_inj, ls='--', color='k')
+  plt.xlim([min(np.append(Mf_i, Mf_r)), max(np.append(Mf_i, Mf_r))])
+  plt.ylim([min(np.append(chif_i, chif_r)), max(np.append(chif_i, chif_r))])
+  plt.xlabel(r'$M_f~[M_\odot]$')
+  plt.ylabel(r'$\chi_f$')
+  plt.grid()
+
+  CSi.levels = np.asarray(CSi.levels)
+  CSr.levels = np.asarray(CSr.levels)
+  CSimr.levels = np.asarray(CSimr.levels)
+
+  strs_i = [ 'inspiral', 'inspiral' ]
+  strs_r = [ 'ringdown', 'ringdown' ]
+  strs_imr = [ 'IMR', 'IMR' ]
+  fmt_i = {}
+  fmt_r = {}
+  fmt_imr = {}
+  for l,s in zip(CSi.levels, strs_i):
+    fmt_i[l] = s
+  for l,s in zip(CSr.levels, strs_r):
+    fmt_r[l] = s
+  for l,s in zip(CSimr.levels, strs_imr):
+    fmt_imr[l] = s
+
+  ## Label every other level using strings
+  plt.clabel(CSi,CSi.levels[::2],inline=True,fmt=fmt_i,fontsize=14, use_clabeltext=True)
+  plt.clabel(CSr,CSr.levels[::2],inline=True,fmt=fmt_r,fontsize=14, use_clabeltext=True)
+  plt.clabel(CSimr,CSimr.levels[::2],inline=True,fmt=fmt_imr,fontsize=10)
+
+  plt.savefig('%s/img/IMR_overlap.png'%(out_dir), dpi=300)
+  plt.savefig('%s/img/IMR_overlap_thumb.png'%(out_dir), dpi=72)
+
+  #(dMf/Mf, dchif/chif)
+  conf_v1v2 = confidence(P_dMfbyMf_dchifbychif)
+  s1_v1v2 = conf_v1v2.height_from_level(0.68)
+  s2_v1v2 = conf_v1v2.height_from_level(0.95)
+
+  conf_v1 = confidence(P_dMfbyMf)
+  s1_v1 = conf_v1.height_from_level(0.68)
+  s2_v1 = conf_v1.height_from_level(0.95)
+
+  conf_v2 = confidence(P_dchifbychif)
+  s1_v2 = conf_v2.height_from_level(0.68)
+  s2_v2 = conf_v2.height_from_level(0.95)
+
+  # Calculation of condifence edges
+  left1_v1 = min(dMfbyMf_vec[np.where(P_dMfbyMf>=s1_v1)[0]])
+  right1_v1 = max(dMfbyMf_vec[np.where(P_dMfbyMf>=s1_v1)[0]])
+
+  left2_v1 = min(dMfbyMf_vec[np.where(P_dMfbyMf>=s2_v1)[0]])
+  right2_v1 = max(dMfbyMf_vec[np.where(P_dMfbyMf>=s2_v1)[0]])
+
+  left1_v2 = min(dchifbychif_vec[np.where(P_dchifbychif>s1_v2)[0]])
+  right1_v2 = max(dchifbychif_vec[np.where(P_dchifbychif>s1_v2)[0]])
+
+  left2_v2 = min(dchifbychif_vec[np.where(P_dchifbychif>s2_v2)[0]])
+  right2_v2 = max(dchifbychif_vec[np.where(P_dchifbychif>s2_v2)[0]])
+
+  plt.figure(figsize=(5,5))
+  plt.subplot2grid((3,3), (0,0), colspan=2)
+  plt.plot(dMfbyMf_vec, P_dMfbyMf, color='k', lw=1)
+  plt.axvline(x=left1_v1, color='c', lw=0.5, ls='-.')
+  plt.axvline(x=right1_v1, color='c', lw=0.5, ls='-.')
+  plt.axvline(x=left2_v1, color='b', lw=0.5, ls='-.')
+  plt.axvline(x=right2_v1, color='b', lw=0.5, ls='-.')
+  #plt.xlabel(r'$\Delta M_f/M_f$')
+  plt.ylabel(r'$P(\Delta M_f/M_f)$')
+  #plt.grid()
+
+  plt.subplot2grid((3,3), (1,0), colspan=2, rowspan=2)
+  plt.pcolormesh(dMfbyMf_vec,dchifbychif_vec,P_dMfbyMf_dchifbychif, cmap='YlOrBr')
+  plt.contour(dMfbyMf_vec,dchifbychif_vec,tgr.gf(P_dMfbyMf_dchifbychif), levels=(s2_v1v2,s1_v1v2), linewidths=(1,1.5))
+  plt.plot(0, 0, 'k+', ms=12, mew=2)
+  plt.xlabel(r'$\Delta M_f/M_f$')
+  plt.ylabel(r'$\Delta \chi_f/\chi_f$')
+  plt.xlim([-dMfbyMf_lim,dMfbyMf_lim])
+  plt.ylim([-dchifbychif_lim,dchifbychif_lim])
+  plt.grid()
+
+  plt.subplot2grid((3,3), (1,2), rowspan=2)
+  plt.plot(P_dchifbychif, dchifbychif_vec,'k', lw=1)
+  plt.axhline(y=left1_v2, color='c', lw=0.5, ls='-.')
+  plt.axhline(y=right1_v2, color='c', lw=0.5, ls='-.')
+  plt.axhline(y=left2_v2, color='b', lw=0.5, ls='-.')
+  plt.axhline(y=right2_v2, color='b', lw=0.5, ls='-.')
+  #plt.ylabel(r'$\Delta \chi_f/\chi_f$')
+  plt.xlabel(r'$P(\Delta \chi_f/\chi_f)$')
+  #plt.grid()
+
+  plt.savefig('%s/img/dMfbyMfdchifbychif.png' %(out_dir), dpi=300)
+  plt.savefig('%s/img/dMfbyMfdchifbychif_thumb.png' %(out_dir), dpi=72)
+
+  print('... made summary plots')
+
+  print('... completed in %f seconds' %(time.time()-start_time))
+  #########################################################################################