imas-python 0.1.dev1618__py3-none-any.whl

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Files changed (108) hide show
  1. imas/__init__.py +34 -0
  2. imas/__main__.py +17 -0
  3. imas/_util.py +260 -0
  4. imas/_version.py +16 -0
  5. imas/assets/IDSDef2MDSpreTree.xsl +161 -0
  6. imas/assets/IDS_fake_toplevel.xml +318 -0
  7. imas/assets/IDS_minimal.xml +37 -0
  8. imas/assets/IDS_minimal_2.xml +37 -0
  9. imas/assets/IDS_minimal_struct_array.xml +43 -0
  10. imas/assets/IDS_minimal_types.xml +169 -0
  11. imas/assets/ITER_134173_106_core_profiles.ids +2438 -0
  12. imas/assets/ITER_134173_106_equilibrium.ids +3172 -0
  13. imas/assets/README.md +5 -0
  14. imas/assets/core_profiles.ids +2438 -0
  15. imas/assets/equilibrium.ids +3172 -0
  16. imas/backends/__init__.py +12 -0
  17. imas/backends/db_entry_impl.py +122 -0
  18. imas/backends/imas_core/__init__.py +4 -0
  19. imas/backends/imas_core/al_context.py +391 -0
  20. imas/backends/imas_core/db_entry_al.py +405 -0
  21. imas/backends/imas_core/db_entry_helpers.py +200 -0
  22. imas/backends/imas_core/imas_interface.py +216 -0
  23. imas/backends/imas_core/mdsplus_model.py +367 -0
  24. imas/backends/imas_core/uda_support.py +56 -0
  25. imas/backends/netcdf/__init__.py +4 -0
  26. imas/backends/netcdf/db_entry_nc.py +176 -0
  27. imas/backends/netcdf/ids2nc.py +306 -0
  28. imas/backends/netcdf/nc2ids.py +302 -0
  29. imas/backends/netcdf/nc_metadata.py +357 -0
  30. imas/backends/netcdf/nc_validate.py +53 -0
  31. imas/command/cli.py +239 -0
  32. imas/command/db_analysis.py +290 -0
  33. imas/command/helpers.py +45 -0
  34. imas/command/timer.py +77 -0
  35. imas/db_entry.py +802 -0
  36. imas/dd_helpers.py +300 -0
  37. imas/dd_zip.py +297 -0
  38. imas/exception.py +107 -0
  39. imas/ids_base.py +149 -0
  40. imas/ids_convert.py +920 -0
  41. imas/ids_coordinates.py +400 -0
  42. imas/ids_data_type.py +115 -0
  43. imas/ids_defs.py +171 -0
  44. imas/ids_factory.py +108 -0
  45. imas/ids_identifiers.py +125 -0
  46. imas/ids_metadata.py +307 -0
  47. imas/ids_path.py +254 -0
  48. imas/ids_primitive.py +510 -0
  49. imas/ids_struct_array.py +233 -0
  50. imas/ids_structure.py +331 -0
  51. imas/ids_toplevel.py +381 -0
  52. imas/setup_logging.py +64 -0
  53. imas/test/test_all_dd_versions.py +28 -0
  54. imas/test/test_cli.py +44 -0
  55. imas/test/test_dbentry.py +104 -0
  56. imas/test/test_dd_helpers.py +134 -0
  57. imas/test/test_dd_zip.py +29 -0
  58. imas/test/test_deepcopy.py +25 -0
  59. imas/test/test_exception.py +12 -0
  60. imas/test/test_get_sample.py +388 -0
  61. imas/test/test_hash.py +188 -0
  62. imas/test/test_helpers.py +354 -0
  63. imas/test/test_identifiers.py +105 -0
  64. imas/test/test_ids2nc.py +166 -0
  65. imas/test/test_ids_ascii_data.py +39 -0
  66. imas/test/test_ids_convert.py +415 -0
  67. imas/test/test_ids_coordinates.py +165 -0
  68. imas/test/test_ids_data_type.py +40 -0
  69. imas/test/test_ids_factory.py +35 -0
  70. imas/test/test_ids_metadata.py +66 -0
  71. imas/test/test_ids_mixin.py +20 -0
  72. imas/test/test_ids_path.py +192 -0
  73. imas/test/test_ids_primitive.py +109 -0
  74. imas/test/test_ids_struct_array.py +89 -0
  75. imas/test/test_ids_structure.py +70 -0
  76. imas/test/test_ids_toplevel.py +55 -0
  77. imas/test/test_ids_validate.py +343 -0
  78. imas/test/test_latest_dd_autofill.py +74 -0
  79. imas/test/test_latest_dd_manual.py +38 -0
  80. imas/test/test_latest_dd_resample.py +102 -0
  81. imas/test/test_lazy_loading.py +201 -0
  82. imas/test/test_list_occurrences.py +82 -0
  83. imas/test/test_minimal.py +37 -0
  84. imas/test/test_minimal_conversion.py +44 -0
  85. imas/test/test_minimal_io.py +21 -0
  86. imas/test/test_minimal_struct_array_io.py +60 -0
  87. imas/test/test_minimal_types.py +436 -0
  88. imas/test/test_minimal_types_io.py +70 -0
  89. imas/test/test_minimal_types_io_automatic.py +66 -0
  90. imas/test/test_nbc_change.py +408 -0
  91. imas/test/test_nc_autofill.py +13 -0
  92. imas/test/test_nc_entry.py +28 -0
  93. imas/test/test_nc_metadata.py +153 -0
  94. imas/test/test_nc_validation.py +197 -0
  95. imas/test/test_snippets.py +25 -0
  96. imas/test/test_static_ids.py +39 -0
  97. imas/test/test_str_1d.py +99 -0
  98. imas/test/test_time_slicing.py +182 -0
  99. imas/test/test_uda_support.py +12 -0
  100. imas/test/test_util.py +209 -0
  101. imas/training.py +45 -0
  102. imas/util.py +526 -0
  103. imas_python-0.1.dev1618.dist-info/LICENSE.txt +165 -0
  104. imas_python-0.1.dev1618.dist-info/METADATA +288 -0
  105. imas_python-0.1.dev1618.dist-info/RECORD +108 -0
  106. imas_python-0.1.dev1618.dist-info/WHEEL +5 -0
  107. imas_python-0.1.dev1618.dist-info/entry_points.txt +3 -0
  108. imas_python-0.1.dev1618.dist-info/top_level.txt +1 -0
imas/command/timer.py ADDED
@@ -0,0 +1,77 @@
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+ # This file is part of imas-python.
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+ # You should have received the imas-python LICENSE file with this project.
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+ """Utility class to time different sections of a CLI app."""
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+
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+ import time
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+ from contextlib import contextmanager
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+
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+ from rich.align import Align
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+ from rich.table import Table
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+
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+
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+ class Timer:
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+ """Convenience class to time sections in a CLI app.
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+
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+ Usage:
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+
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+ .. code-block:: python
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+
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+ # Construct a timer with column/row labels "X" and "Y"
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+ timer = Timer("X", "Y")
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+
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+ # Time code
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+ with timer("x-value1", "y-value1"):
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+ ... # Code to be timed
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+
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+ # Output table with timing information
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+ rich.print(timer.get_table())
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+ """
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+
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+ def __init__(self, *axes):
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+ self.axes = axes
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+ self.axes_values = tuple({} for _ in axes)
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+ self.data = {}
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+
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+ @contextmanager
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+ def __call__(self, *items):
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+ assert len(items) == len(self.axes)
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+ tic = time.time()
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+ yield
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+ self.data[items] = time.time() - tic
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+ for i, item in enumerate(items):
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+ # Use dict to keep insertion order
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+ self.axes_values[i][item] = None
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+
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+ def get_table(self, title="Timings") -> Table:
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+ """Construct a table with timing details.
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+
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+ Currently only implemented when timing on two axes.
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+ """
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+ if len(self.axes) == 2:
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+ table = Table(title=title, show_footer=True)
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+
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+ # Calculate totals per column
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+ totals = {value: 0 for value in self.axes_values[0]}
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+ for (col, _), value in self.data.items():
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+ totals[col] += value
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+
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+ # Create columns
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+ table.add_column(footer="TOTAL:", justify="right")
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+ for value in self.axes_values[0]:
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+ table.add_column(
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+ header=Align(value, "center"),
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+ footer=f"{totals[value]:.3f} s",
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+ justify="right",
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+ )
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+
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+ # Fill table
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+ for row in self.axes_values[1]:
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+ row_values = (
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+ f"{self.data[col, row]:.3f} s" if (col, row) in self.data else "-"
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+ for col in self.axes_values[0]
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+ )
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+ table.add_row(row, *row_values)
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+
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+ return table
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+ # non-2D is not implemented
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+ raise NotImplementedError()