hpcflow 0.1.9__py3-none-any.whl → 0.2.0a271__py3-none-any.whl

hpcflow/copytree.py

@@ -1,66 +0,0 @@
-from shutil import copy2, copystat, Error, ignore_patterns, copytree
-import os
-
-
-def copytree_multi(src, dst, symlinks=False, ignore=None, copy_function=copy2,
-                   ignore_dangling_symlinks=False):
-    """Duplicate of shutil.copytree, but only invokes os.makedirs
-    if dst does not exist."""
-
-    names = os.listdir(src)
-    if ignore is not None:
-        ignored_names = ignore(src, names)
-    else:
-        ignored_names = set()
-
-    # ------------ EDIT --------------
-    if not os.path.isdir(dst):
-        os.makedirs(dst)
-    # ------------ EDIT --------------
-
-    errors = []
-    for name in names:
-        if name in ignored_names:
-            continue
-        srcname = os.path.join(src, name)
-        dstname = os.path.join(dst, name)
-        try:
-            if os.path.islink(srcname):
-                linkto = os.readlink(srcname)
-                if symlinks:
-                    # We can't just leave it to `copy_function` because legacy
-                    # code with a custom `copy_function` may rely on copytree
-                    # doing the right thing.
-                    os.symlink(linkto, dstname)
-                    copystat(srcname, dstname, follow_symlinks=not symlinks)
-                else:
-                    # ignore dangling symlink if the flag is on
-                    if not os.path.exists(linkto) and ignore_dangling_symlinks:
-                        continue
-                    # otherwise let the copy occurs. copy2 will raise an error
-                    if os.path.isdir(srcname):
-                        copytree_multi(srcname, dstname, symlinks, ignore,
-                                       copy_function)
-                    else:
-                        copy_function(srcname, dstname)
-            elif os.path.isdir(srcname):
-                copytree_multi(srcname, dstname, symlinks,
-                               ignore, copy_function)
-            else:
-                # Will raise a SpecialFileError for unsupported file types
-                copy_function(srcname, dstname)
-        # catch the Error from the recursive copytree so that we can
-        # continue with other files
-        except Error as err:
-            errors.extend(err.args[0])
-        except OSError as why:
-            errors.append((srcname, dstname, str(why)))
-    try:
-        copystat(src, dst)
-    except OSError as why:
-        # Copying file access times may fail on Windows
-        if getattr(why, 'winerror', None) is None:
-            errors.append((src, dst, str(why)))
-    if errors:
-        raise Error(errors)
-    return dst

hpcflow/data/examples/_config.yml

@@ -1,14 +0,0 @@
-submission_filename_fmt: <<order>>.<<name>>.yml
-directory_list_filename_fmt: sim_list.txt
-confirm_before_submit: true
-profile_ext: '.yml'
-jobscript_ext: '.sh'
-variable_file_ext: '.txt'
-python_module_load: apps/anaconda3/5.2.0 # Perhaps not needed due to entrypoints?
-hpcflow_directory: '.hpcflow'
-archive_locations:
-  dropbox:
-    path: a/b/c
-  rds:
-    path: /mnt/cr01-home01/mbdxqap3/test_hpcflow
-    exclude: ['.hpcflow']

hpcflow/data/examples/damask/demo/1.run.yml

@@ -1,4 +0,0 @@
-profile: damask_run
-
-options:
-  pe: smp.pe 4

hpcflow/data/examples/damask/demo/2.process.yml

@@ -1,29 +0,0 @@
-profile: damask_process
-
-command_groups:
-  # group 1:
-  - commands:
-      - postResults --cr "f,p" --co "totalshear" --split --separation "x,y,z" <<spectral_fn>>
-  # group 2:
-  - commands:
-      - addCauchy <<table_inc_fn>> 
-      - addStrainTensors --logarithmic --left <<table_inc_fn>>
-      - addMises --stress "Cauchy" --strain "ln(V)" <<table_inc_fn>>
-    parallel:
-      variables: true
-
-variables:
-
-  # Method A:
-  table_inc_fn:
-    data: [20, 40, 60, 80]
-    value: 'postProc/<<spectral_base_fn>>_inc{:03d}.txt'
-    
-  # Method B:
-  # table_inc_fn:
-  #   file_regex:
-  #     pattern: 'postProc\/.+_inc([0-9]+).txt'
-  #     group: 0
-  #     type: int
-  #     subset: [20, 40, 60, 80]
-  #   value: 'postProc/<<spectral_base_fn>>_inc{:03d}.txt'