hpcflow 0.1.9__py3-none-any.whl → 0.2.0a271__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- hpcflow/__init__.py +2 -11
- hpcflow/__pyinstaller/__init__.py +5 -0
- hpcflow/__pyinstaller/hook-hpcflow.py +40 -0
- hpcflow/_version.py +1 -1
- hpcflow/app.py +43 -0
- hpcflow/cli.py +2 -462
- hpcflow/data/demo_data_manifest/__init__.py +3 -0
- hpcflow/data/demo_data_manifest/demo_data_manifest.json +6 -0
- hpcflow/data/jinja_templates/test/test_template.txt +8 -0
- hpcflow/data/programs/hello_world/README.md +1 -0
- hpcflow/data/programs/hello_world/hello_world.c +87 -0
- hpcflow/data/programs/hello_world/linux/hello_world +0 -0
- hpcflow/data/programs/hello_world/macos/hello_world +0 -0
- hpcflow/data/programs/hello_world/win/hello_world.exe +0 -0
- hpcflow/data/scripts/__init__.py +1 -0
- hpcflow/data/scripts/bad_script.py +2 -0
- hpcflow/data/scripts/demo_task_1_generate_t1_infile_1.py +8 -0
- hpcflow/data/scripts/demo_task_1_generate_t1_infile_2.py +8 -0
- hpcflow/data/scripts/demo_task_1_parse_p3.py +7 -0
- hpcflow/data/scripts/do_nothing.py +2 -0
- hpcflow/data/scripts/env_specifier_test/input_file_generator_pass_env_spec.py +4 -0
- hpcflow/data/scripts/env_specifier_test/main_script_test_pass_env_spec.py +8 -0
- hpcflow/data/scripts/env_specifier_test/output_file_parser_pass_env_spec.py +4 -0
- hpcflow/data/scripts/env_specifier_test/v1/input_file_generator_basic.py +4 -0
- hpcflow/data/scripts/env_specifier_test/v1/main_script_test_direct_in_direct_out.py +7 -0
- hpcflow/data/scripts/env_specifier_test/v1/output_file_parser_basic.py +4 -0
- hpcflow/data/scripts/env_specifier_test/v2/main_script_test_direct_in_direct_out.py +7 -0
- hpcflow/data/scripts/generate_t1_file_01.py +7 -0
- hpcflow/data/scripts/import_future_script.py +7 -0
- hpcflow/data/scripts/input_file_generator_basic.py +3 -0
- hpcflow/data/scripts/input_file_generator_basic_FAIL.py +3 -0
- hpcflow/data/scripts/input_file_generator_test_stdout_stderr.py +8 -0
- hpcflow/data/scripts/main_script_test_direct_in.py +3 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_2.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed_group.py +7 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_3.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_all_iters_test.py +15 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_env_spec.py +7 -0
- hpcflow/data/scripts/main_script_test_direct_in_direct_out_labels.py +8 -0
- hpcflow/data/scripts/main_script_test_direct_in_group_direct_out_3.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_in_group_one_fail_direct_out_3.py +6 -0
- hpcflow/data/scripts/main_script_test_direct_sub_param_in_direct_out.py +6 -0
- hpcflow/data/scripts/main_script_test_hdf5_in_obj.py +12 -0
- hpcflow/data/scripts/main_script_test_hdf5_in_obj_2.py +12 -0
- hpcflow/data/scripts/main_script_test_hdf5_in_obj_group.py +12 -0
- hpcflow/data/scripts/main_script_test_hdf5_out_obj.py +11 -0
- hpcflow/data/scripts/main_script_test_json_and_direct_in_json_out.py +14 -0
- hpcflow/data/scripts/main_script_test_json_in_json_and_direct_out.py +17 -0
- hpcflow/data/scripts/main_script_test_json_in_json_out.py +14 -0
- hpcflow/data/scripts/main_script_test_json_in_json_out_labels.py +16 -0
- hpcflow/data/scripts/main_script_test_json_in_obj.py +12 -0
- hpcflow/data/scripts/main_script_test_json_out_FAIL.py +3 -0
- hpcflow/data/scripts/main_script_test_json_out_obj.py +10 -0
- hpcflow/data/scripts/main_script_test_json_sub_param_in_json_out_labels.py +16 -0
- hpcflow/data/scripts/main_script_test_shell_env_vars.py +12 -0
- hpcflow/data/scripts/main_script_test_std_out_std_err.py +6 -0
- hpcflow/data/scripts/output_file_parser_basic.py +3 -0
- hpcflow/data/scripts/output_file_parser_basic_FAIL.py +7 -0
- hpcflow/data/scripts/output_file_parser_test_stdout_stderr.py +8 -0
- hpcflow/data/scripts/parse_t1_file_01.py +4 -0
- hpcflow/data/scripts/script_exit_test.py +5 -0
- hpcflow/data/template_components/__init__.py +1 -0
- hpcflow/data/template_components/command_files.yaml +26 -0
- hpcflow/data/template_components/environments.yaml +13 -0
- hpcflow/data/template_components/parameters.yaml +14 -0
- hpcflow/data/template_components/task_schemas.yaml +139 -0
- hpcflow/data/workflows/workflow_1.yaml +5 -0
- hpcflow/examples.ipynb +1037 -0
- hpcflow/sdk/__init__.py +149 -0
- hpcflow/sdk/app.py +4266 -0
- hpcflow/sdk/cli.py +1479 -0
- hpcflow/sdk/cli_common.py +385 -0
- hpcflow/sdk/config/__init__.py +5 -0
- hpcflow/sdk/config/callbacks.py +246 -0
- hpcflow/sdk/config/cli.py +388 -0
- hpcflow/sdk/config/config.py +1410 -0
- hpcflow/sdk/config/config_file.py +501 -0
- hpcflow/sdk/config/errors.py +272 -0
- hpcflow/sdk/config/types.py +150 -0
- hpcflow/sdk/core/__init__.py +38 -0
- hpcflow/sdk/core/actions.py +3857 -0
- hpcflow/sdk/core/app_aware.py +25 -0
- hpcflow/sdk/core/cache.py +224 -0
- hpcflow/sdk/core/command_files.py +814 -0
- hpcflow/sdk/core/commands.py +424 -0
- hpcflow/sdk/core/element.py +2071 -0
- hpcflow/sdk/core/enums.py +221 -0
- hpcflow/sdk/core/environment.py +256 -0
- hpcflow/sdk/core/errors.py +1043 -0
- hpcflow/sdk/core/execute.py +207 -0
- hpcflow/sdk/core/json_like.py +809 -0
- hpcflow/sdk/core/loop.py +1320 -0
- hpcflow/sdk/core/loop_cache.py +282 -0
- hpcflow/sdk/core/object_list.py +933 -0
- hpcflow/sdk/core/parameters.py +3371 -0
- hpcflow/sdk/core/rule.py +196 -0
- hpcflow/sdk/core/run_dir_files.py +57 -0
- hpcflow/sdk/core/skip_reason.py +7 -0
- hpcflow/sdk/core/task.py +3792 -0
- hpcflow/sdk/core/task_schema.py +993 -0
- hpcflow/sdk/core/test_utils.py +538 -0
- hpcflow/sdk/core/types.py +447 -0
- hpcflow/sdk/core/utils.py +1207 -0
- hpcflow/sdk/core/validation.py +87 -0
- hpcflow/sdk/core/values.py +477 -0
- hpcflow/sdk/core/workflow.py +4820 -0
- hpcflow/sdk/core/zarr_io.py +206 -0
- hpcflow/sdk/data/__init__.py +13 -0
- hpcflow/sdk/data/config_file_schema.yaml +34 -0
- hpcflow/sdk/data/config_schema.yaml +260 -0
- hpcflow/sdk/data/environments_spec_schema.yaml +21 -0
- hpcflow/sdk/data/files_spec_schema.yaml +5 -0
- hpcflow/sdk/data/parameters_spec_schema.yaml +7 -0
- hpcflow/sdk/data/task_schema_spec_schema.yaml +3 -0
- hpcflow/sdk/data/workflow_spec_schema.yaml +22 -0
- hpcflow/sdk/demo/__init__.py +3 -0
- hpcflow/sdk/demo/cli.py +242 -0
- hpcflow/sdk/helper/__init__.py +3 -0
- hpcflow/sdk/helper/cli.py +137 -0
- hpcflow/sdk/helper/helper.py +300 -0
- hpcflow/sdk/helper/watcher.py +192 -0
- hpcflow/sdk/log.py +288 -0
- hpcflow/sdk/persistence/__init__.py +18 -0
- hpcflow/sdk/persistence/base.py +2817 -0
- hpcflow/sdk/persistence/defaults.py +6 -0
- hpcflow/sdk/persistence/discovery.py +39 -0
- hpcflow/sdk/persistence/json.py +954 -0
- hpcflow/sdk/persistence/pending.py +948 -0
- hpcflow/sdk/persistence/store_resource.py +203 -0
- hpcflow/sdk/persistence/types.py +309 -0
- hpcflow/sdk/persistence/utils.py +73 -0
- hpcflow/sdk/persistence/zarr.py +2388 -0
- hpcflow/sdk/runtime.py +320 -0
- hpcflow/sdk/submission/__init__.py +3 -0
- hpcflow/sdk/submission/enums.py +70 -0
- hpcflow/sdk/submission/jobscript.py +2379 -0
- hpcflow/sdk/submission/schedulers/__init__.py +281 -0
- hpcflow/sdk/submission/schedulers/direct.py +233 -0
- hpcflow/sdk/submission/schedulers/sge.py +376 -0
- hpcflow/sdk/submission/schedulers/slurm.py +598 -0
- hpcflow/sdk/submission/schedulers/utils.py +25 -0
- hpcflow/sdk/submission/shells/__init__.py +52 -0
- hpcflow/sdk/submission/shells/base.py +229 -0
- hpcflow/sdk/submission/shells/bash.py +504 -0
- hpcflow/sdk/submission/shells/os_version.py +115 -0
- hpcflow/sdk/submission/shells/powershell.py +352 -0
- hpcflow/sdk/submission/submission.py +1402 -0
- hpcflow/sdk/submission/types.py +140 -0
- hpcflow/sdk/typing.py +194 -0
- hpcflow/sdk/utils/arrays.py +69 -0
- hpcflow/sdk/utils/deferred_file.py +55 -0
- hpcflow/sdk/utils/hashing.py +16 -0
- hpcflow/sdk/utils/patches.py +31 -0
- hpcflow/sdk/utils/strings.py +69 -0
- hpcflow/tests/api/test_api.py +32 -0
- hpcflow/tests/conftest.py +123 -0
- hpcflow/tests/data/__init__.py +0 -0
- hpcflow/tests/data/benchmark_N_elements.yaml +6 -0
- hpcflow/tests/data/benchmark_script_runner.yaml +26 -0
- hpcflow/tests/data/multi_path_sequences.yaml +29 -0
- hpcflow/tests/data/workflow_1.json +10 -0
- hpcflow/tests/data/workflow_1.yaml +5 -0
- hpcflow/tests/data/workflow_1_slurm.yaml +8 -0
- hpcflow/tests/data/workflow_1_wsl.yaml +8 -0
- hpcflow/tests/data/workflow_test_run_abort.yaml +42 -0
- hpcflow/tests/jinja_templates/test_jinja_templates.py +161 -0
- hpcflow/tests/programs/test_programs.py +180 -0
- hpcflow/tests/schedulers/direct_linux/test_direct_linux_submission.py +12 -0
- hpcflow/tests/schedulers/sge/test_sge_submission.py +36 -0
- hpcflow/tests/schedulers/slurm/test_slurm_submission.py +14 -0
- hpcflow/tests/scripts/test_input_file_generators.py +282 -0
- hpcflow/tests/scripts/test_main_scripts.py +1361 -0
- hpcflow/tests/scripts/test_non_snippet_script.py +46 -0
- hpcflow/tests/scripts/test_ouput_file_parsers.py +353 -0
- hpcflow/tests/shells/wsl/test_wsl_submission.py +14 -0
- hpcflow/tests/unit/test_action.py +1066 -0
- hpcflow/tests/unit/test_action_rule.py +24 -0
- hpcflow/tests/unit/test_app.py +132 -0
- hpcflow/tests/unit/test_cache.py +46 -0
- hpcflow/tests/unit/test_cli.py +172 -0
- hpcflow/tests/unit/test_command.py +377 -0
- hpcflow/tests/unit/test_config.py +195 -0
- hpcflow/tests/unit/test_config_file.py +162 -0
- hpcflow/tests/unit/test_element.py +666 -0
- hpcflow/tests/unit/test_element_iteration.py +88 -0
- hpcflow/tests/unit/test_element_set.py +158 -0
- hpcflow/tests/unit/test_group.py +115 -0
- hpcflow/tests/unit/test_input_source.py +1479 -0
- hpcflow/tests/unit/test_input_value.py +398 -0
- hpcflow/tests/unit/test_jobscript_unit.py +757 -0
- hpcflow/tests/unit/test_json_like.py +1247 -0
- hpcflow/tests/unit/test_loop.py +2674 -0
- hpcflow/tests/unit/test_meta_task.py +325 -0
- hpcflow/tests/unit/test_multi_path_sequences.py +259 -0
- hpcflow/tests/unit/test_object_list.py +116 -0
- hpcflow/tests/unit/test_parameter.py +243 -0
- hpcflow/tests/unit/test_persistence.py +664 -0
- hpcflow/tests/unit/test_resources.py +243 -0
- hpcflow/tests/unit/test_run.py +286 -0
- hpcflow/tests/unit/test_run_directories.py +29 -0
- hpcflow/tests/unit/test_runtime.py +9 -0
- hpcflow/tests/unit/test_schema_input.py +372 -0
- hpcflow/tests/unit/test_shell.py +129 -0
- hpcflow/tests/unit/test_slurm.py +39 -0
- hpcflow/tests/unit/test_submission.py +502 -0
- hpcflow/tests/unit/test_task.py +2560 -0
- hpcflow/tests/unit/test_task_schema.py +182 -0
- hpcflow/tests/unit/test_utils.py +616 -0
- hpcflow/tests/unit/test_value_sequence.py +549 -0
- hpcflow/tests/unit/test_values.py +91 -0
- hpcflow/tests/unit/test_workflow.py +827 -0
- hpcflow/tests/unit/test_workflow_template.py +186 -0
- hpcflow/tests/unit/utils/test_arrays.py +40 -0
- hpcflow/tests/unit/utils/test_deferred_file_writer.py +34 -0
- hpcflow/tests/unit/utils/test_hashing.py +65 -0
- hpcflow/tests/unit/utils/test_patches.py +5 -0
- hpcflow/tests/unit/utils/test_redirect_std.py +50 -0
- hpcflow/tests/unit/utils/test_strings.py +97 -0
- hpcflow/tests/workflows/__init__.py +0 -0
- hpcflow/tests/workflows/test_directory_structure.py +31 -0
- hpcflow/tests/workflows/test_jobscript.py +355 -0
- hpcflow/tests/workflows/test_run_status.py +198 -0
- hpcflow/tests/workflows/test_skip_downstream.py +696 -0
- hpcflow/tests/workflows/test_submission.py +140 -0
- hpcflow/tests/workflows/test_workflows.py +564 -0
- hpcflow/tests/workflows/test_zip.py +18 -0
- hpcflow/viz_demo.ipynb +6794 -0
- hpcflow-0.2.0a271.dist-info/LICENSE +375 -0
- hpcflow-0.2.0a271.dist-info/METADATA +65 -0
- hpcflow-0.2.0a271.dist-info/RECORD +237 -0
- {hpcflow-0.1.9.dist-info → hpcflow-0.2.0a271.dist-info}/WHEEL +4 -5
- hpcflow-0.2.0a271.dist-info/entry_points.txt +6 -0
- hpcflow/api.py +0 -458
- hpcflow/archive/archive.py +0 -308
- hpcflow/archive/cloud/cloud.py +0 -47
- hpcflow/archive/cloud/errors.py +0 -9
- hpcflow/archive/cloud/providers/dropbox.py +0 -432
- hpcflow/archive/errors.py +0 -5
- hpcflow/base_db.py +0 -4
- hpcflow/config.py +0 -232
- hpcflow/copytree.py +0 -66
- hpcflow/data/examples/_config.yml +0 -14
- hpcflow/data/examples/damask/demo/1.run.yml +0 -4
- hpcflow/data/examples/damask/demo/2.process.yml +0 -29
- hpcflow/data/examples/damask/demo/geom.geom +0 -2052
- hpcflow/data/examples/damask/demo/load.load +0 -1
- hpcflow/data/examples/damask/demo/material.config +0 -185
- hpcflow/data/examples/damask/inputs/geom.geom +0 -2052
- hpcflow/data/examples/damask/inputs/load.load +0 -1
- hpcflow/data/examples/damask/inputs/material.config +0 -185
- hpcflow/data/examples/damask/profiles/_variable_lookup.yml +0 -21
- hpcflow/data/examples/damask/profiles/damask.yml +0 -4
- hpcflow/data/examples/damask/profiles/damask_process.yml +0 -8
- hpcflow/data/examples/damask/profiles/damask_run.yml +0 -5
- hpcflow/data/examples/damask/profiles/default.yml +0 -6
- hpcflow/data/examples/thinking.yml +0 -177
- hpcflow/errors.py +0 -2
- hpcflow/init_db.py +0 -37
- hpcflow/models.py +0 -2549
- hpcflow/nesting.py +0 -9
- hpcflow/profiles.py +0 -455
- hpcflow/project.py +0 -81
- hpcflow/scheduler.py +0 -323
- hpcflow/utils.py +0 -103
- hpcflow/validation.py +0 -167
- hpcflow/variables.py +0 -544
- hpcflow-0.1.9.dist-info/METADATA +0 -168
- hpcflow-0.1.9.dist-info/RECORD +0 -45
- hpcflow-0.1.9.dist-info/entry_points.txt +0 -8
- hpcflow-0.1.9.dist-info/top_level.txt +0 -1
- /hpcflow/{archive → data/jinja_templates}/__init__.py +0 -0
- /hpcflow/{archive/cloud → data/programs}/__init__.py +0 -0
- /hpcflow/{archive/cloud/providers → data/workflows}/__init__.py +0 -0
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|
|
75
|
+
t1 = hf.Task(
|
|
76
|
+
schema=s1,
|
|
77
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[101, 102], nesting_order=1)],
|
|
78
|
+
)
|
|
79
|
+
t2 = hf.Task(schema=s2, nesting_order={"inputs.p2": 1})
|
|
80
|
+
|
|
81
|
+
wkt = hf.WorkflowTemplate(name="w1", tasks=[t1, t2])
|
|
82
|
+
return hf.Workflow.from_template(wkt, path=tmp_path)
|
|
83
|
+
|
|
84
|
+
|
|
85
|
+
@pytest.fixture
|
|
86
|
+
def workflow_w2(
|
|
87
|
+
null_config,
|
|
88
|
+
tmp_path: Path,
|
|
89
|
+
param_p1: Parameter,
|
|
90
|
+
param_p2: Parameter,
|
|
91
|
+
param_p3: Parameter,
|
|
92
|
+
) -> Workflow:
|
|
93
|
+
s1 = hf.TaskSchema("t1", actions=[], inputs=[param_p1], outputs=[param_p2])
|
|
94
|
+
s2 = hf.TaskSchema("t2", actions=[], inputs=[param_p2, param_p3])
|
|
95
|
+
|
|
96
|
+
t1 = hf.Task(
|
|
97
|
+
schema=s1,
|
|
98
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[101, 102], nesting_order=1)],
|
|
99
|
+
)
|
|
100
|
+
t2 = hf.Task(
|
|
101
|
+
schema=s2,
|
|
102
|
+
sequences=[
|
|
103
|
+
hf.ValueSequence("inputs.p3", values=[301, 302, 303], nesting_order=1)
|
|
104
|
+
],
|
|
105
|
+
nesting_order={"inputs.p2": 0},
|
|
106
|
+
)
|
|
107
|
+
|
|
108
|
+
wkt = hf.WorkflowTemplate(name="w1", tasks=[t1, t2])
|
|
109
|
+
return hf.Workflow.from_template(wkt, path=tmp_path)
|
|
110
|
+
|
|
111
|
+
|
|
112
|
+
@pytest.fixture
|
|
113
|
+
def workflow_w3(
|
|
114
|
+
null_config,
|
|
115
|
+
tmp_path: Path,
|
|
116
|
+
param_p1: Parameter,
|
|
117
|
+
param_p2: Parameter,
|
|
118
|
+
param_p3: Parameter,
|
|
119
|
+
param_p4: Parameter,
|
|
120
|
+
) -> Workflow:
|
|
121
|
+
s1 = hf.TaskSchema("t1", actions=[], inputs=[param_p1], outputs=[param_p3])
|
|
122
|
+
s2 = hf.TaskSchema("t2", actions=[], inputs=[param_p2, param_p3], outputs=[param_p4])
|
|
123
|
+
s3 = hf.TaskSchema("t3", actions=[], inputs=[param_p3, param_p4])
|
|
124
|
+
|
|
125
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue(param_p1, 101)])
|
|
126
|
+
t2 = hf.Task(
|
|
127
|
+
schema=s2,
|
|
128
|
+
sequences=[hf.ValueSequence("inputs.p2", values=[201, 202], nesting_order=1)],
|
|
129
|
+
)
|
|
130
|
+
t3 = hf.Task(schema=s3, nesting_order={"inputs.p3": 0, "inputs.p4": 1})
|
|
131
|
+
|
|
132
|
+
wkt = hf.WorkflowTemplate(name="w1", tasks=[t1, t2, t3])
|
|
133
|
+
return hf.Workflow.from_template(wkt, name=wkt.name, overwrite=True)
|
|
134
|
+
|
|
135
|
+
|
|
136
|
+
@pytest.fixture
|
|
137
|
+
def file_spec_fs1() -> FileSpec:
|
|
138
|
+
return hf.FileSpec(label="file1", name="file1.txt")
|
|
139
|
+
|
|
140
|
+
|
|
141
|
+
@pytest.fixture
|
|
142
|
+
def act_env_1() -> ActionEnvironment:
|
|
143
|
+
return hf.ActionEnvironment("env_1")
|
|
144
|
+
|
|
145
|
+
|
|
146
|
+
@pytest.fixture
|
|
147
|
+
def act_3(
|
|
148
|
+
act_env_1: ActionEnvironment, param_p2: Parameter, file_spec_fs1: FileSpec
|
|
149
|
+
) -> Action:
|
|
150
|
+
return hf.Action(
|
|
151
|
+
commands=[hf.Command("<<parameter:p1>>")],
|
|
152
|
+
output_file_parsers=[
|
|
153
|
+
hf.OutputFileParser(output=param_p2, output_files=[file_spec_fs1]),
|
|
154
|
+
],
|
|
155
|
+
environments=[act_env_1],
|
|
156
|
+
)
|
|
157
|
+
|
|
158
|
+
|
|
159
|
+
@pytest.fixture
|
|
160
|
+
def schema_s3(param_p1: Parameter, param_p2: Parameter, act_3) -> TaskSchema:
|
|
161
|
+
return hf.TaskSchema("ts1", actions=[act_3], inputs=[param_p1], outputs=[param_p2])
|
|
162
|
+
|
|
163
|
+
|
|
164
|
+
@pytest.fixture
|
|
165
|
+
def workflow_w4(
|
|
166
|
+
null_config, tmp_path: Path, schema_s3: TaskSchema, param_p1: Parameter
|
|
167
|
+
) -> Workflow:
|
|
168
|
+
t1 = hf.Task(schema=schema_s3, inputs=[hf.InputValue(param_p1, 101)])
|
|
169
|
+
wkt = hf.WorkflowTemplate(name="w1", tasks=[t1])
|
|
170
|
+
return hf.Workflow.from_template(wkt, path=tmp_path)
|
|
171
|
+
|
|
172
|
+
|
|
173
|
+
@pytest.fixture
|
|
174
|
+
def act_1(act_env_1: ActionEnvironment) -> Action:
|
|
175
|
+
return hf.Action(
|
|
176
|
+
commands=[hf.Command("<<parameter:p1>>")],
|
|
177
|
+
environments=[act_env_1],
|
|
178
|
+
)
|
|
179
|
+
|
|
180
|
+
|
|
181
|
+
@pytest.fixture
|
|
182
|
+
def act_2(act_env_1: ActionEnvironment) -> Action:
|
|
183
|
+
return hf.Action(
|
|
184
|
+
commands=[hf.Command("<<parameter:p2>>")],
|
|
185
|
+
environments=[act_env_1],
|
|
186
|
+
)
|
|
187
|
+
|
|
188
|
+
|
|
189
|
+
@pytest.fixture
|
|
190
|
+
def schema_s1(param_p1: Parameter, act_1) -> TaskSchema:
|
|
191
|
+
return hf.TaskSchema("ts1", actions=[act_1], inputs=[param_p1])
|
|
192
|
+
|
|
193
|
+
|
|
194
|
+
@pytest.fixture
|
|
195
|
+
def schema_s2(param_p1: Parameter, act_1) -> TaskSchema:
|
|
196
|
+
return hf.TaskSchema(
|
|
197
|
+
"ts1", actions=[act_1], inputs=[hf.SchemaInput(param_p1, default_value=101)]
|
|
198
|
+
)
|
|
199
|
+
|
|
200
|
+
|
|
201
|
+
@pytest.fixture
|
|
202
|
+
def schema_s4(param_p2: Parameter, act_2) -> TaskSchema:
|
|
203
|
+
return hf.TaskSchema("ts2", actions=[act_2], inputs=[param_p2])
|
|
204
|
+
|
|
205
|
+
|
|
206
|
+
@pytest.fixture
|
|
207
|
+
def schema_s5(param_p2: Parameter, act_2) -> TaskSchema:
|
|
208
|
+
return hf.TaskSchema(
|
|
209
|
+
"ts2", actions=[act_2], inputs=[hf.SchemaInput(param_p2, default_value=2002)]
|
|
210
|
+
)
|
|
211
|
+
|
|
212
|
+
|
|
213
|
+
def test_task_get_available_task_input_sources_expected_return_first_task_local_value(
|
|
214
|
+
schema_s1: TaskSchema,
|
|
215
|
+
param_p1: Parameter,
|
|
216
|
+
):
|
|
217
|
+
t1 = hf.Task(schema=schema_s1, inputs=[hf.InputValue(param_p1, value=101)])
|
|
218
|
+
|
|
219
|
+
available = t1.get_available_task_input_sources(
|
|
220
|
+
element_set=t1.element_sets[0],
|
|
221
|
+
source_tasks=[],
|
|
222
|
+
)
|
|
223
|
+
available_exp = {"p1": [hf.InputSource(source_type=hf.InputSourceType.LOCAL)]}
|
|
224
|
+
|
|
225
|
+
assert available == available_exp
|
|
226
|
+
|
|
227
|
+
|
|
228
|
+
def test_task_get_available_task_input_sources_expected_return_first_task_default_value(
|
|
229
|
+
schema_s2: TaskSchema,
|
|
230
|
+
):
|
|
231
|
+
t1 = hf.Task(schema=schema_s2)
|
|
232
|
+
available = t1.get_available_task_input_sources(element_set=t1.element_sets[0])
|
|
233
|
+
available_exp = {"p1": [hf.InputSource(source_type=hf.InputSourceType.DEFAULT)]}
|
|
234
|
+
|
|
235
|
+
assert available == available_exp
|
|
236
|
+
|
|
237
|
+
|
|
238
|
+
def test_task_get_available_task_input_sources_expected_return_one_param_one_output(
|
|
239
|
+
tmp_path: Path,
|
|
240
|
+
):
|
|
241
|
+
t1, t2 = make_tasks(
|
|
242
|
+
schemas_spec=[
|
|
243
|
+
({"p1": NullDefault.NULL}, ("p2",), "t1"),
|
|
244
|
+
({"p2": NullDefault.NULL}, (), "t2"),
|
|
245
|
+
],
|
|
246
|
+
local_inputs={0: ("p1",)},
|
|
247
|
+
)
|
|
248
|
+
wk = hf.Workflow.from_template(
|
|
249
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1]), path=tmp_path
|
|
250
|
+
)
|
|
251
|
+
available = t2.get_available_task_input_sources(
|
|
252
|
+
element_set=t2.element_sets[0],
|
|
253
|
+
source_tasks=[wk.tasks.t1],
|
|
254
|
+
)
|
|
255
|
+
available_exp = {
|
|
256
|
+
"p2": [
|
|
257
|
+
hf.InputSource(
|
|
258
|
+
source_type=hf.InputSourceType.TASK,
|
|
259
|
+
task_ref=0,
|
|
260
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
261
|
+
element_iters=[0],
|
|
262
|
+
)
|
|
263
|
+
]
|
|
264
|
+
}
|
|
265
|
+
assert available == available_exp
|
|
266
|
+
|
|
267
|
+
|
|
268
|
+
def test_task_get_available_task_input_sources_expected_return_one_param_one_output_with_default(
|
|
269
|
+
tmp_path: Path,
|
|
270
|
+
):
|
|
271
|
+
t1, t2 = make_tasks(
|
|
272
|
+
schemas_spec=[
|
|
273
|
+
({"p1": None}, ("p2",), "t1"),
|
|
274
|
+
({"p2": 2001}, (), "t2"),
|
|
275
|
+
],
|
|
276
|
+
local_inputs={0: ("p1",)},
|
|
277
|
+
)
|
|
278
|
+
wk = hf.Workflow.from_template(
|
|
279
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1]), path=tmp_path
|
|
280
|
+
)
|
|
281
|
+
available = t2.get_available_task_input_sources(
|
|
282
|
+
element_set=t2.element_sets[0],
|
|
283
|
+
source_tasks=[wk.tasks.t1],
|
|
284
|
+
)
|
|
285
|
+
available_exp = {
|
|
286
|
+
"p2": [
|
|
287
|
+
hf.InputSource(
|
|
288
|
+
source_type=hf.InputSourceType.TASK,
|
|
289
|
+
task_ref=0,
|
|
290
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
291
|
+
element_iters=[0],
|
|
292
|
+
),
|
|
293
|
+
hf.InputSource(source_type=hf.InputSourceType.DEFAULT),
|
|
294
|
+
]
|
|
295
|
+
}
|
|
296
|
+
assert available == available_exp
|
|
297
|
+
|
|
298
|
+
|
|
299
|
+
def test_task_get_available_task_input_sources_expected_return_one_param_one_output_with_local(
|
|
300
|
+
tmp_path: Path,
|
|
301
|
+
):
|
|
302
|
+
t1, t2 = make_tasks(
|
|
303
|
+
schemas_spec=[
|
|
304
|
+
({"p1": NullDefault.NULL}, ("p2",), "t1"),
|
|
305
|
+
({"p2": NullDefault.NULL}, (), "t2"),
|
|
306
|
+
],
|
|
307
|
+
local_inputs={0: ("p1",), 1: ("p2",)},
|
|
308
|
+
)
|
|
309
|
+
wk = hf.Workflow.from_template(
|
|
310
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1]), path=tmp_path
|
|
311
|
+
)
|
|
312
|
+
available = t2.get_available_task_input_sources(
|
|
313
|
+
element_set=t2.element_sets[0],
|
|
314
|
+
source_tasks=[wk.tasks.t1],
|
|
315
|
+
)
|
|
316
|
+
available_exp = {
|
|
317
|
+
"p2": [
|
|
318
|
+
hf.InputSource(source_type=hf.InputSourceType.LOCAL),
|
|
319
|
+
hf.InputSource(
|
|
320
|
+
source_type=hf.InputSourceType.TASK,
|
|
321
|
+
task_ref=0,
|
|
322
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
323
|
+
element_iters=[0],
|
|
324
|
+
),
|
|
325
|
+
]
|
|
326
|
+
}
|
|
327
|
+
assert available == available_exp
|
|
328
|
+
|
|
329
|
+
|
|
330
|
+
def test_task_get_available_task_input_sources_expected_return_one_param_one_output_with_default_and_local(
|
|
331
|
+
tmp_path: Path,
|
|
332
|
+
):
|
|
333
|
+
t1, t2 = make_tasks(
|
|
334
|
+
schemas_spec=[
|
|
335
|
+
({"p1": None}, ("p2",), "t1"),
|
|
336
|
+
({"p2": 2001}, (), "t2"),
|
|
337
|
+
],
|
|
338
|
+
local_inputs={0: ("p1",), 1: ("p2",)},
|
|
339
|
+
)
|
|
340
|
+
wk = hf.Workflow.from_template(
|
|
341
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1]), path=tmp_path
|
|
342
|
+
)
|
|
343
|
+
available = t2.get_available_task_input_sources(
|
|
344
|
+
element_set=t2.element_sets[0],
|
|
345
|
+
source_tasks=[wk.tasks.t1],
|
|
346
|
+
)
|
|
347
|
+
available_exp = {
|
|
348
|
+
"p2": [
|
|
349
|
+
hf.InputSource(source_type=hf.InputSourceType.LOCAL),
|
|
350
|
+
hf.InputSource(
|
|
351
|
+
source_type=hf.InputSourceType.TASK,
|
|
352
|
+
task_ref=0,
|
|
353
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
354
|
+
element_iters=[0],
|
|
355
|
+
),
|
|
356
|
+
hf.InputSource(source_type=hf.InputSourceType.DEFAULT),
|
|
357
|
+
]
|
|
358
|
+
}
|
|
359
|
+
assert available == available_exp
|
|
360
|
+
|
|
361
|
+
|
|
362
|
+
def test_task_get_available_task_input_sources_expected_return_one_param_two_outputs(
|
|
363
|
+
tmp_path: Path,
|
|
364
|
+
):
|
|
365
|
+
t1, t2, t3 = make_tasks(
|
|
366
|
+
schemas_spec=[
|
|
367
|
+
({"p1": NullDefault.NULL}, ("p2", "p3"), "t1"),
|
|
368
|
+
({"p2": NullDefault.NULL}, ("p3", "p4"), "t2"),
|
|
369
|
+
({"p3": NullDefault.NULL}, (), "t3"),
|
|
370
|
+
],
|
|
371
|
+
local_inputs={0: ("p1",), 1: ("p2",)},
|
|
372
|
+
)
|
|
373
|
+
wk = hf.Workflow.from_template(
|
|
374
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1, t2]), path=tmp_path
|
|
375
|
+
)
|
|
376
|
+
available = t3.get_available_task_input_sources(
|
|
377
|
+
element_set=t3.element_sets[0],
|
|
378
|
+
source_tasks=[wk.tasks.t1, wk.tasks.t2],
|
|
379
|
+
)
|
|
380
|
+
available_exp = {
|
|
381
|
+
"p3": [
|
|
382
|
+
hf.InputSource(
|
|
383
|
+
source_type=hf.InputSourceType.TASK,
|
|
384
|
+
task_ref=1,
|
|
385
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
386
|
+
element_iters=[1],
|
|
387
|
+
),
|
|
388
|
+
hf.InputSource(
|
|
389
|
+
source_type=hf.InputSourceType.TASK,
|
|
390
|
+
task_ref=0,
|
|
391
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
392
|
+
element_iters=[0],
|
|
393
|
+
),
|
|
394
|
+
]
|
|
395
|
+
}
|
|
396
|
+
assert available == available_exp
|
|
397
|
+
|
|
398
|
+
|
|
399
|
+
def test_task_get_available_task_input_sources_expected_return_two_params_one_output(
|
|
400
|
+
tmp_path: Path,
|
|
401
|
+
):
|
|
402
|
+
t1, t2 = make_tasks(
|
|
403
|
+
schemas_spec=[
|
|
404
|
+
({"p1": NullDefault.NULL}, ("p2", "p3"), "t1"),
|
|
405
|
+
({"p2": NullDefault.NULL, "p3": NullDefault.NULL}, (), "t2"),
|
|
406
|
+
],
|
|
407
|
+
local_inputs={0: ("p1",)},
|
|
408
|
+
)
|
|
409
|
+
wk = hf.Workflow.from_template(
|
|
410
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1]), path=tmp_path
|
|
411
|
+
)
|
|
412
|
+
available = t2.get_available_task_input_sources(
|
|
413
|
+
element_set=t2.element_sets[0],
|
|
414
|
+
source_tasks=[wk.tasks.t1],
|
|
415
|
+
)
|
|
416
|
+
available_exp = {
|
|
417
|
+
"p2": [
|
|
418
|
+
hf.InputSource(
|
|
419
|
+
source_type=hf.InputSourceType.TASK,
|
|
420
|
+
task_ref=0,
|
|
421
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
422
|
+
element_iters=[0],
|
|
423
|
+
)
|
|
424
|
+
],
|
|
425
|
+
"p3": [
|
|
426
|
+
hf.InputSource(
|
|
427
|
+
source_type=hf.InputSourceType.TASK,
|
|
428
|
+
task_ref=0,
|
|
429
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
430
|
+
element_iters=[0],
|
|
431
|
+
)
|
|
432
|
+
],
|
|
433
|
+
}
|
|
434
|
+
assert available == available_exp
|
|
435
|
+
|
|
436
|
+
|
|
437
|
+
def test_task_get_available_task_input_sources_one_parameter_extravaganza(
|
|
438
|
+
tmp_path: Path,
|
|
439
|
+
):
|
|
440
|
+
t1, t2, t3 = make_tasks(
|
|
441
|
+
schemas_spec=[
|
|
442
|
+
({"p1": NullDefault.NULL}, ("p1",), "t1"), # sources for t3: input + output
|
|
443
|
+
({"p1": NullDefault.NULL}, ("p1",), "t2"), # sources fot t3: input + output
|
|
444
|
+
({"p1": NullDefault.NULL}, ("p1",), "t3"),
|
|
445
|
+
],
|
|
446
|
+
local_inputs={0: ("p1",)},
|
|
447
|
+
)
|
|
448
|
+
wk = hf.Workflow.from_template(
|
|
449
|
+
hf.WorkflowTemplate(name="w1", tasks=[t1, t2]), path=tmp_path
|
|
450
|
+
)
|
|
451
|
+
available = t3.get_available_task_input_sources(
|
|
452
|
+
element_set=t3.element_sets[0],
|
|
453
|
+
source_tasks=[wk.tasks.t1, wk.tasks.t2],
|
|
454
|
+
)
|
|
455
|
+
available_exp = {
|
|
456
|
+
"p1": [
|
|
457
|
+
hf.InputSource(
|
|
458
|
+
source_type=hf.InputSourceType.TASK,
|
|
459
|
+
task_ref=1,
|
|
460
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
461
|
+
element_iters=[1],
|
|
462
|
+
),
|
|
463
|
+
hf.InputSource(
|
|
464
|
+
source_type=hf.InputSourceType.TASK,
|
|
465
|
+
task_ref=0,
|
|
466
|
+
task_source_type=hf.TaskSourceType.OUTPUT,
|
|
467
|
+
element_iters=[0],
|
|
468
|
+
),
|
|
469
|
+
hf.InputSource(
|
|
470
|
+
source_type=hf.InputSourceType.TASK,
|
|
471
|
+
task_ref=1,
|
|
472
|
+
task_source_type=hf.TaskSourceType.INPUT,
|
|
473
|
+
element_iters=[1],
|
|
474
|
+
),
|
|
475
|
+
hf.InputSource(
|
|
476
|
+
source_type=hf.InputSourceType.TASK,
|
|
477
|
+
task_ref=0,
|
|
478
|
+
task_source_type=hf.TaskSourceType.INPUT,
|
|
479
|
+
element_iters=[0],
|
|
480
|
+
),
|
|
481
|
+
],
|
|
482
|
+
}
|
|
483
|
+
assert available == available_exp
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
def test_task_input_sources_output_label(null_config, tmp_path: Path):
|
|
487
|
+
ts1 = hf.TaskSchema(
|
|
488
|
+
objective="t1",
|
|
489
|
+
outputs=[hf.SchemaOutput("p1")],
|
|
490
|
+
actions=[
|
|
491
|
+
hf.Action(
|
|
492
|
+
commands=[
|
|
493
|
+
hf.Command(command="Write-Host 101", stdout="<<int(parameter:p1)>>")
|
|
494
|
+
]
|
|
495
|
+
)
|
|
496
|
+
],
|
|
497
|
+
)
|
|
498
|
+
ts2 = hf.TaskSchema(
|
|
499
|
+
objective="t2", inputs=[hf.SchemaInput("p1", labels={"one": {}}, multiple=True)]
|
|
500
|
+
)
|
|
501
|
+
|
|
502
|
+
tasks = [
|
|
503
|
+
hf.Task(schema=ts1, output_labels=[hf.OutputLabel(parameter="p1", label="one")]),
|
|
504
|
+
hf.Task(schema=ts2),
|
|
505
|
+
]
|
|
506
|
+
wk = hf.Workflow.from_template_data(
|
|
507
|
+
tasks=tasks, template_name="test_sources", path=tmp_path
|
|
508
|
+
)
|
|
509
|
+
|
|
510
|
+
assert wk.tasks.t2.template.element_sets[0].input_sources == {
|
|
511
|
+
"p1[one]": [
|
|
512
|
+
hf.InputSource.task(task_ref=0, task_source_type="output", element_iters=[0])
|
|
513
|
+
]
|
|
514
|
+
}
|
|
515
|
+
|
|
516
|
+
|
|
517
|
+
def test_task_input_sources_output_label_filtered(null_config, tmp_path: Path):
|
|
518
|
+
ts1 = hf.TaskSchema(
|
|
519
|
+
objective="t1",
|
|
520
|
+
inputs=[hf.SchemaInput("p1")],
|
|
521
|
+
outputs=[hf.SchemaOutput("p1")],
|
|
522
|
+
actions=[
|
|
523
|
+
hf.Action(
|
|
524
|
+
commands=[
|
|
525
|
+
hf.Command(
|
|
526
|
+
command="Write-Host (<<parameter:p1>> + 101)",
|
|
527
|
+
stdout="<<int(parameter:p1)>>",
|
|
528
|
+
),
|
|
529
|
+
],
|
|
530
|
+
),
|
|
531
|
+
],
|
|
532
|
+
)
|
|
533
|
+
ts2 = hf.TaskSchema(
|
|
534
|
+
objective="t2", inputs=[hf.SchemaInput("p1", labels={"one": {}}, multiple=True)]
|
|
535
|
+
)
|
|
536
|
+
|
|
537
|
+
tasks = [
|
|
538
|
+
hf.Task(
|
|
539
|
+
schema=ts1,
|
|
540
|
+
sequences=[hf.ValueSequence(path="inputs.p1", values=[1, 2])],
|
|
541
|
+
output_labels=[
|
|
542
|
+
hf.OutputLabel(
|
|
543
|
+
parameter="p1",
|
|
544
|
+
label="one",
|
|
545
|
+
where=hf.Rule(path="inputs.p1", condition={"value.equal_to": 2}),
|
|
546
|
+
),
|
|
547
|
+
],
|
|
548
|
+
),
|
|
549
|
+
hf.Task(schema=ts2),
|
|
550
|
+
]
|
|
551
|
+
wk = hf.Workflow.from_template_data(
|
|
552
|
+
tasks=tasks,
|
|
553
|
+
template_name="test_sources",
|
|
554
|
+
path=tmp_path,
|
|
555
|
+
)
|
|
556
|
+
|
|
557
|
+
assert wk.tasks.t2.template.element_sets[0].input_sources == {
|
|
558
|
+
"p1[one]": [
|
|
559
|
+
hf.InputSource.task(task_ref=0, task_source_type="output", element_iters=[1])
|
|
560
|
+
]
|
|
561
|
+
}
|
|
562
|
+
|
|
563
|
+
|
|
564
|
+
def test_get_task_unique_names_two_tasks_no_repeats():
|
|
565
|
+
s1 = hf.TaskSchema("t1", actions=[])
|
|
566
|
+
s2 = hf.TaskSchema("t2", actions=[])
|
|
567
|
+
|
|
568
|
+
t1 = hf.Task(schema=s1)
|
|
569
|
+
t2 = hf.Task(schema=s2)
|
|
570
|
+
|
|
571
|
+
assert hf.Task.get_task_unique_names([t1, t2]) == ["t1", "t2"]
|
|
572
|
+
|
|
573
|
+
|
|
574
|
+
def test_get_task_unique_names_two_tasks_with_repeat():
|
|
575
|
+
s1 = hf.TaskSchema("t1", actions=[])
|
|
576
|
+
|
|
577
|
+
t1 = hf.Task(schema=s1)
|
|
578
|
+
t2 = hf.Task(schema=s1)
|
|
579
|
+
|
|
580
|
+
assert hf.Task.get_task_unique_names([t1, t2]) == ["t1_1", "t1_2"]
|
|
581
|
+
|
|
582
|
+
|
|
583
|
+
def test_raise_on_multiple_schema_objectives():
|
|
584
|
+
s1 = hf.TaskSchema("t1", actions=[])
|
|
585
|
+
s2 = hf.TaskSchema("t2", actions=[])
|
|
586
|
+
with pytest.raises(TaskTemplateMultipleSchemaObjectives):
|
|
587
|
+
hf.Task(schema=[s1, s2])
|
|
588
|
+
|
|
589
|
+
|
|
590
|
+
def test_raise_on_unexpected_inputs(param_p1: Parameter, param_p2: Parameter):
|
|
591
|
+
(s1,) = make_schemas(({"p1": None}, ()))
|
|
592
|
+
|
|
593
|
+
with pytest.raises(TaskTemplateUnexpectedInput):
|
|
594
|
+
hf.Task(
|
|
595
|
+
schema=s1,
|
|
596
|
+
inputs=[
|
|
597
|
+
hf.InputValue(param_p1, value=101),
|
|
598
|
+
hf.InputValue(param_p2, value=4),
|
|
599
|
+
],
|
|
600
|
+
)
|
|
601
|
+
|
|
602
|
+
|
|
603
|
+
def test_raise_on_multiple_input_values(param_p1: Parameter):
|
|
604
|
+
(s1,) = make_schemas(({"p1": None}, ()))
|
|
605
|
+
|
|
606
|
+
with pytest.raises(TaskTemplateMultipleInputValues):
|
|
607
|
+
hf.Task(
|
|
608
|
+
schema=s1,
|
|
609
|
+
inputs=[
|
|
610
|
+
hf.InputValue(param_p1, value=101),
|
|
611
|
+
hf.InputValue(param_p1, value=7),
|
|
612
|
+
],
|
|
613
|
+
)
|
|
614
|
+
|
|
615
|
+
|
|
616
|
+
def test_raise_on_multiple_input_values_same_label(param_p1: Parameter):
|
|
617
|
+
s1 = hf.TaskSchema(
|
|
618
|
+
objective="t1",
|
|
619
|
+
inputs=[hf.SchemaInput(parameter="p1", labels={"0": {}})],
|
|
620
|
+
)
|
|
621
|
+
|
|
622
|
+
with pytest.raises(TaskTemplateMultipleInputValues):
|
|
623
|
+
hf.Task(
|
|
624
|
+
schema=s1,
|
|
625
|
+
inputs=[
|
|
626
|
+
hf.InputValue(param_p1, value=101, label="0"),
|
|
627
|
+
hf.InputValue(param_p1, value=101, label="0"),
|
|
628
|
+
],
|
|
629
|
+
)
|
|
630
|
+
|
|
631
|
+
|
|
632
|
+
def test_multiple_input_values_different_labels(param_p1: Parameter):
|
|
633
|
+
s1 = hf.TaskSchema(
|
|
634
|
+
objective="t1",
|
|
635
|
+
inputs=[
|
|
636
|
+
hf.SchemaInput(
|
|
637
|
+
parameter="p1",
|
|
638
|
+
labels={"0": {}, "1": {}},
|
|
639
|
+
multiple=True,
|
|
640
|
+
)
|
|
641
|
+
],
|
|
642
|
+
)
|
|
643
|
+
hf.Task(
|
|
644
|
+
schema=s1,
|
|
645
|
+
inputs=[
|
|
646
|
+
hf.InputValue(param_p1, value=101, label="0"),
|
|
647
|
+
hf.InputValue(param_p1, value=101, label="1"),
|
|
648
|
+
],
|
|
649
|
+
)
|
|
650
|
+
|
|
651
|
+
|
|
652
|
+
def test_expected_return_defined_and_undefined_input_types(
|
|
653
|
+
param_p1: Parameter, param_p2: Parameter
|
|
654
|
+
):
|
|
655
|
+
(s1,) = make_schemas(({"p1": None, "p2": None}, ()))
|
|
656
|
+
|
|
657
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue(param_p1, value=101)])
|
|
658
|
+
element_set = t1.element_sets[0]
|
|
659
|
+
assert element_set.defined_input_types == {
|
|
660
|
+
param_p1.typ
|
|
661
|
+
} and element_set.undefined_input_types == {param_p2.typ}
|
|
662
|
+
|
|
663
|
+
|
|
664
|
+
def test_expected_return_all_schema_input_types_single_schema(
|
|
665
|
+
param_p1: Parameter, param_p2: Parameter
|
|
666
|
+
):
|
|
667
|
+
(s1,) = make_schemas(({"p1": None, "p2": None}, ()))
|
|
668
|
+
t1 = hf.Task(schema=s1)
|
|
669
|
+
|
|
670
|
+
assert t1.all_schema_input_types == {param_p1.typ, param_p2.typ}
|
|
671
|
+
|
|
672
|
+
|
|
673
|
+
def test_expected_return_all_schema_input_types_multiple_schemas(
|
|
674
|
+
param_p1: Parameter, param_p2: Parameter, param_p3: Parameter
|
|
675
|
+
):
|
|
676
|
+
s1, s2 = make_schemas(
|
|
677
|
+
({"p1": None, "p2": None}, (), "t1"), ({"p1": None, "p3": None}, (), "t1")
|
|
678
|
+
)
|
|
679
|
+
|
|
680
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
681
|
+
|
|
682
|
+
assert t1.all_schema_input_types == {param_p1.typ, param_p2.typ, param_p3.typ}
|
|
683
|
+
|
|
684
|
+
|
|
685
|
+
def test_expected_name_single_schema():
|
|
686
|
+
s1 = hf.TaskSchema("t1", actions=[])
|
|
687
|
+
t1 = hf.Task(schema=[s1])
|
|
688
|
+
assert t1.name == "t1"
|
|
689
|
+
|
|
690
|
+
|
|
691
|
+
def test_expected_name_single_schema_with_method():
|
|
692
|
+
s1 = hf.TaskSchema("t1", method="m1", actions=[])
|
|
693
|
+
t1 = hf.Task(schema=s1)
|
|
694
|
+
assert t1.name == "t1_m1"
|
|
695
|
+
|
|
696
|
+
|
|
697
|
+
def test_expected_name_single_schema_with_implementation():
|
|
698
|
+
s1 = hf.TaskSchema("t1", implementation="i1", actions=[])
|
|
699
|
+
t1 = hf.Task(schema=s1)
|
|
700
|
+
assert t1.name == "t1_i1"
|
|
701
|
+
|
|
702
|
+
|
|
703
|
+
def test_expected_name_single_schema_with_method_and_implementation():
|
|
704
|
+
s1 = hf.TaskSchema("t1", method="m1", implementation="i1", actions=[])
|
|
705
|
+
t1 = hf.Task(schema=s1)
|
|
706
|
+
assert t1.name == "t1_m1_i1"
|
|
707
|
+
|
|
708
|
+
|
|
709
|
+
def test_expected_name_multiple_schemas():
|
|
710
|
+
s1 = hf.TaskSchema("t1", actions=[])
|
|
711
|
+
s2 = hf.TaskSchema("t1", actions=[])
|
|
712
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
713
|
+
assert t1.name == "t1"
|
|
714
|
+
|
|
715
|
+
|
|
716
|
+
def test_expected_name_two_schemas_first_with_method():
|
|
717
|
+
s1 = hf.TaskSchema("t1", method="m1", actions=[])
|
|
718
|
+
s2 = hf.TaskSchema("t1", actions=[])
|
|
719
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
720
|
+
assert t1.name == "t1_m1"
|
|
721
|
+
|
|
722
|
+
|
|
723
|
+
def test_expected_name_two_schemas_first_with_method_and_implementation():
|
|
724
|
+
s1 = hf.TaskSchema("t1", method="m1", implementation="i1", actions=[])
|
|
725
|
+
s2 = hf.TaskSchema("t1", actions=[])
|
|
726
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
727
|
+
assert t1.name == "t1_m1_i1"
|
|
728
|
+
|
|
729
|
+
|
|
730
|
+
def test_expected_name_two_schemas_both_with_method():
|
|
731
|
+
s1 = hf.TaskSchema("t1", method="m1", actions=[])
|
|
732
|
+
s2 = hf.TaskSchema("t1", method="m2", actions=[])
|
|
733
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
734
|
+
assert t1.name == "t1_m1_and_m2"
|
|
735
|
+
|
|
736
|
+
|
|
737
|
+
def test_expected_name_two_schemas_first_with_method_second_with_implementation():
|
|
738
|
+
s1 = hf.TaskSchema("t1", method="m1", actions=[])
|
|
739
|
+
s2 = hf.TaskSchema("t1", implementation="i2", actions=[])
|
|
740
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
741
|
+
assert t1.name == "t1_m1_and_i2"
|
|
742
|
+
|
|
743
|
+
|
|
744
|
+
def test_expected_name_two_schemas_first_with_implementation_second_with_method():
|
|
745
|
+
s1 = hf.TaskSchema("t1", implementation="i1", actions=[])
|
|
746
|
+
s2 = hf.TaskSchema("t1", method="m2", actions=[])
|
|
747
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
748
|
+
assert t1.name == "t1_i1_and_m2"
|
|
749
|
+
|
|
750
|
+
|
|
751
|
+
def test_expected_name_two_schemas_both_with_method_and_implementation():
|
|
752
|
+
s1 = hf.TaskSchema("t1", method="m1", implementation="i1", actions=[])
|
|
753
|
+
s2 = hf.TaskSchema("t1", method="m2", implementation="i2", actions=[])
|
|
754
|
+
t1 = hf.Task(schema=[s1, s2])
|
|
755
|
+
assert t1.name == "t1_m1_i1_and_m2_i2"
|
|
756
|
+
|
|
757
|
+
|
|
758
|
+
def test_raise_on_negative_nesting_order():
|
|
759
|
+
(s1,) = make_schemas(({"p1": None}, ()))
|
|
760
|
+
with pytest.raises(TaskTemplateInvalidNesting):
|
|
761
|
+
hf.Task(schema=s1, nesting_order={"inputs.p1": -1})
|
|
762
|
+
|
|
763
|
+
|
|
764
|
+
# TODO: test resolution of elements and with raise MissingInputs
|
|
765
|
+
|
|
766
|
+
|
|
767
|
+
def test_empty_task_init():
|
|
768
|
+
"""Check we can init a hf.Task with no input values."""
|
|
769
|
+
(s1,) = make_schemas(({"p1": None}, ()))
|
|
770
|
+
t1 = hf.Task(schema=s1)
|
|
771
|
+
|
|
772
|
+
|
|
773
|
+
def test_task_task_dependencies(tmp_path: Path):
|
|
774
|
+
wk = make_workflow(
|
|
775
|
+
schemas_spec=[
|
|
776
|
+
({"p1": None}, ("p2",), "t1"),
|
|
777
|
+
({"p2": None}, (), "t2"),
|
|
778
|
+
],
|
|
779
|
+
local_inputs={0: ("p1",)},
|
|
780
|
+
path=tmp_path,
|
|
781
|
+
)
|
|
782
|
+
assert wk.tasks.t2.get_task_dependencies(as_objects=True) == [wk.tasks.t1]
|
|
783
|
+
|
|
784
|
+
|
|
785
|
+
def test_task_dependent_tasks(tmp_path: Path):
|
|
786
|
+
wk = make_workflow(
|
|
787
|
+
schemas_spec=[
|
|
788
|
+
({"p1": None}, ("p2",), "t1"),
|
|
789
|
+
({"p2": None}, (), "t2"),
|
|
790
|
+
],
|
|
791
|
+
local_inputs={0: ("p1",)},
|
|
792
|
+
path=tmp_path,
|
|
793
|
+
)
|
|
794
|
+
assert wk.tasks.t1.get_dependent_tasks(as_objects=True) == [wk.tasks.t2]
|
|
795
|
+
|
|
796
|
+
|
|
797
|
+
def test_task_element_dependencies(tmp_path: Path):
|
|
798
|
+
wk = make_workflow(
|
|
799
|
+
schemas_spec=[
|
|
800
|
+
({"p1": None}, ("p2",), "t1"),
|
|
801
|
+
({"p2": None}, (), "t2"),
|
|
802
|
+
],
|
|
803
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
804
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
805
|
+
path=tmp_path,
|
|
806
|
+
)
|
|
807
|
+
assert wk.tasks.t2.get_element_dependencies() == {0, 1}
|
|
808
|
+
|
|
809
|
+
|
|
810
|
+
def test_task_dependent_elements(tmp_path: Path):
|
|
811
|
+
wk = make_workflow(
|
|
812
|
+
schemas_spec=[
|
|
813
|
+
({"p1": None}, ("p2",), "t1"),
|
|
814
|
+
({"p2": None}, (), "t2"),
|
|
815
|
+
],
|
|
816
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
817
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
818
|
+
path=tmp_path,
|
|
819
|
+
)
|
|
820
|
+
assert wk.tasks.t1.get_dependent_elements() == {2, 3}
|
|
821
|
+
|
|
822
|
+
|
|
823
|
+
def test_task_add_elements_without_propagation_expected_workflow_num_elements(
|
|
824
|
+
tmp_path: Path, param_p1: Parameter
|
|
825
|
+
):
|
|
826
|
+
wk = make_workflow(
|
|
827
|
+
schemas_spec=[
|
|
828
|
+
({"p1": None}, ("p2",), "t1"),
|
|
829
|
+
({"p2": None}, (), "t2"),
|
|
830
|
+
],
|
|
831
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
832
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
833
|
+
path=tmp_path,
|
|
834
|
+
)
|
|
835
|
+
num_elems = wk.num_elements
|
|
836
|
+
wk.tasks.t1.add_elements(inputs=[hf.InputValue(param_p1, 103)])
|
|
837
|
+
num_elems_new = wk.num_elements
|
|
838
|
+
assert num_elems_new - num_elems == 1
|
|
839
|
+
|
|
840
|
+
|
|
841
|
+
def test_task_add_elements_without_propagation_expected_task_num_elements(
|
|
842
|
+
tmp_path: Path, param_p1: Parameter
|
|
843
|
+
):
|
|
844
|
+
wk = make_workflow(
|
|
845
|
+
schemas_spec=[
|
|
846
|
+
({"p1": None}, ("p2",), "t1"),
|
|
847
|
+
({"p2": None}, (), "t2"),
|
|
848
|
+
],
|
|
849
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
850
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
851
|
+
path=tmp_path,
|
|
852
|
+
)
|
|
853
|
+
num_elems = wk.tasks.t1.num_elements
|
|
854
|
+
wk.tasks.t1.add_elements(inputs=[hf.InputValue(param_p1, 103)])
|
|
855
|
+
num_elems_new = wk.tasks.t1.num_elements
|
|
856
|
+
assert num_elems_new - num_elems == 1
|
|
857
|
+
|
|
858
|
+
|
|
859
|
+
def test_task_add_elements_without_propagation_expected_new_data_index(
|
|
860
|
+
tmp_path: Path, param_p1: Parameter
|
|
861
|
+
):
|
|
862
|
+
wk = make_workflow(
|
|
863
|
+
schemas_spec=[
|
|
864
|
+
({"p1": None}, ("p2",), "t1"),
|
|
865
|
+
({"p2": None}, (), "t2"),
|
|
866
|
+
],
|
|
867
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
868
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
869
|
+
path=tmp_path,
|
|
870
|
+
)
|
|
871
|
+
data_index = [sorted(i.get_data_idx()) for i in wk.tasks.t1.elements[:]]
|
|
872
|
+
wk.tasks.t1.add_elements(inputs=[hf.InputValue(param_p1, 103)])
|
|
873
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.tasks.t1.elements[:]]
|
|
874
|
+
new_elems = data_index_new[len(data_index) :]
|
|
875
|
+
assert new_elems == [["inputs.p1", "outputs.p2", "resources.any"]]
|
|
876
|
+
|
|
877
|
+
|
|
878
|
+
def test_task_add_elements_with_propagation_expected_workflow_num_elements(
|
|
879
|
+
tmp_path: Path, param_p1: Parameter
|
|
880
|
+
):
|
|
881
|
+
wk = make_workflow(
|
|
882
|
+
schemas_spec=[
|
|
883
|
+
({"p1": None}, ("p2",), "t1"),
|
|
884
|
+
({"p2": None}, (), "t2"),
|
|
885
|
+
],
|
|
886
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
887
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
888
|
+
path=tmp_path,
|
|
889
|
+
)
|
|
890
|
+
num_elems = wk.num_elements
|
|
891
|
+
wk.tasks.t1.add_elements(
|
|
892
|
+
inputs=[hf.InputValue(param_p1, 103)],
|
|
893
|
+
propagate_to=[hf.ElementPropagation(task=wk.tasks.t2)],
|
|
894
|
+
)
|
|
895
|
+
num_elems_new = wk.num_elements
|
|
896
|
+
assert num_elems_new - num_elems == 2
|
|
897
|
+
|
|
898
|
+
|
|
899
|
+
def test_task_add_elements_with_propagation_expected_task_num_elements(
|
|
900
|
+
tmp_path: Path, param_p1: Parameter
|
|
901
|
+
):
|
|
902
|
+
wk = make_workflow(
|
|
903
|
+
schemas_spec=[
|
|
904
|
+
({"p1": None}, ("p2",), "t1"),
|
|
905
|
+
({"p2": None}, (), "t2"),
|
|
906
|
+
],
|
|
907
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
908
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
909
|
+
path=tmp_path,
|
|
910
|
+
)
|
|
911
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
912
|
+
wk.tasks.t1.add_elements(
|
|
913
|
+
inputs=[hf.InputValue(param_p1, 103)],
|
|
914
|
+
propagate_to=[hf.ElementPropagation(task=wk.tasks.t2)],
|
|
915
|
+
)
|
|
916
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
917
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
918
|
+
assert num_elems_diff[0] == 1 and num_elems_diff[1] == 1
|
|
919
|
+
|
|
920
|
+
|
|
921
|
+
def test_task_add_elements_with_propagation_expected_new_data_index(
|
|
922
|
+
tmp_path: Path, param_p1: Parameter
|
|
923
|
+
):
|
|
924
|
+
wk = make_workflow(
|
|
925
|
+
schemas_spec=[
|
|
926
|
+
({"p1": None}, ("p2",), "t1"),
|
|
927
|
+
({"p2": None}, (), "t2"),
|
|
928
|
+
],
|
|
929
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
930
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
931
|
+
path=tmp_path,
|
|
932
|
+
)
|
|
933
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
934
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
935
|
+
wk.tasks.t1.add_elements(
|
|
936
|
+
inputs=[hf.InputValue(param_p1, 103)],
|
|
937
|
+
propagate_to=[hf.ElementPropagation(task=wk.tasks.t2)],
|
|
938
|
+
)
|
|
939
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
940
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
941
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
942
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
943
|
+
new_elems_t2 = data_index_new[
|
|
944
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
945
|
+
]
|
|
946
|
+
assert new_elems_t1 == [
|
|
947
|
+
[
|
|
948
|
+
"inputs.p1",
|
|
949
|
+
"outputs.p2",
|
|
950
|
+
"resources.any",
|
|
951
|
+
]
|
|
952
|
+
] and new_elems_t2 == [["inputs.p2", "resources.any"]]
|
|
953
|
+
|
|
954
|
+
|
|
955
|
+
def test_task_add_elements_sequence_without_propagation_expected_workflow_num_elements(
|
|
956
|
+
tmp_path: Path,
|
|
957
|
+
):
|
|
958
|
+
wk = make_workflow(
|
|
959
|
+
schemas_spec=[
|
|
960
|
+
({"p1": None}, ("p2",), "t1"),
|
|
961
|
+
({"p2": None}, (), "t2"),
|
|
962
|
+
],
|
|
963
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
964
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
965
|
+
path=tmp_path,
|
|
966
|
+
)
|
|
967
|
+
num_elems = wk.num_elements
|
|
968
|
+
wk.tasks.t1.add_elements(
|
|
969
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[103, 104], nesting_order=1)]
|
|
970
|
+
)
|
|
971
|
+
num_elems_new = wk.num_elements
|
|
972
|
+
assert num_elems_new - num_elems == 2
|
|
973
|
+
|
|
974
|
+
|
|
975
|
+
def test_task_add_elements_sequence_without_propagation_expected_task_num_elements(
|
|
976
|
+
tmp_path: Path,
|
|
977
|
+
):
|
|
978
|
+
wk = make_workflow(
|
|
979
|
+
schemas_spec=[
|
|
980
|
+
({"p1": None}, ("p2",), "t1"),
|
|
981
|
+
({"p2": None}, (), "t2"),
|
|
982
|
+
],
|
|
983
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
984
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
985
|
+
path=tmp_path,
|
|
986
|
+
)
|
|
987
|
+
num_elems = wk.tasks.t1.num_elements
|
|
988
|
+
wk.tasks.t1.add_elements(
|
|
989
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[103, 104], nesting_order=1)]
|
|
990
|
+
)
|
|
991
|
+
num_elems_new = wk.tasks.t1.num_elements
|
|
992
|
+
assert num_elems_new - num_elems == 2
|
|
993
|
+
|
|
994
|
+
|
|
995
|
+
def test_task_add_elements_sequence_without_propagation_expected_new_data_index(
|
|
996
|
+
tmp_path: Path,
|
|
997
|
+
):
|
|
998
|
+
wk = make_workflow(
|
|
999
|
+
schemas_spec=[
|
|
1000
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1001
|
+
({"p2": None}, (), "t2"),
|
|
1002
|
+
],
|
|
1003
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
1004
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1005
|
+
path=tmp_path,
|
|
1006
|
+
)
|
|
1007
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1008
|
+
wk.tasks.t1.add_elements(
|
|
1009
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[103, 104], nesting_order=1)]
|
|
1010
|
+
)
|
|
1011
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1012
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1013
|
+
new_elems = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1014
|
+
assert new_elems == [
|
|
1015
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1016
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1017
|
+
]
|
|
1018
|
+
|
|
1019
|
+
|
|
1020
|
+
def test_task_add_elements_sequence_with_propagation_expected_workflow_num_elements(
|
|
1021
|
+
tmp_path: Path,
|
|
1022
|
+
):
|
|
1023
|
+
wk = make_workflow(
|
|
1024
|
+
schemas_spec=[
|
|
1025
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1026
|
+
({"p2": None}, (), "t2"),
|
|
1027
|
+
],
|
|
1028
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
1029
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1030
|
+
path=tmp_path,
|
|
1031
|
+
)
|
|
1032
|
+
num_elems = wk.num_elements
|
|
1033
|
+
wk.tasks.t1.add_elements(
|
|
1034
|
+
sequences=[
|
|
1035
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1036
|
+
],
|
|
1037
|
+
propagate_to=[
|
|
1038
|
+
hf.ElementPropagation(task=wk.tasks.t2, nesting_order={"inputs.p2": 1}),
|
|
1039
|
+
],
|
|
1040
|
+
)
|
|
1041
|
+
num_elems_new = wk.num_elements
|
|
1042
|
+
assert num_elems_new - num_elems == 6
|
|
1043
|
+
|
|
1044
|
+
|
|
1045
|
+
def test_task_add_elements_sequence_with_propagation_expected_task_num_elements(
|
|
1046
|
+
tmp_path: Path,
|
|
1047
|
+
):
|
|
1048
|
+
wk = make_workflow(
|
|
1049
|
+
schemas_spec=[
|
|
1050
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1051
|
+
({"p2": None}, (), "t2"),
|
|
1052
|
+
],
|
|
1053
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
1054
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1055
|
+
path=tmp_path,
|
|
1056
|
+
)
|
|
1057
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
1058
|
+
wk.tasks.t1.add_elements(
|
|
1059
|
+
sequences=[
|
|
1060
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1061
|
+
],
|
|
1062
|
+
propagate_to=[
|
|
1063
|
+
hf.ElementPropagation(task=wk.tasks.t2, nesting_order={"inputs.p2": 1}),
|
|
1064
|
+
],
|
|
1065
|
+
)
|
|
1066
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
1067
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
1068
|
+
assert num_elems_diff[0] == 3 and num_elems_diff[1] == 3
|
|
1069
|
+
|
|
1070
|
+
|
|
1071
|
+
def test_task_add_elements_sequence_with_propagation_expected_new_data_index(
|
|
1072
|
+
tmp_path: Path,
|
|
1073
|
+
):
|
|
1074
|
+
wk = make_workflow(
|
|
1075
|
+
schemas_spec=[
|
|
1076
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1077
|
+
({"p2": None}, (), "t2"),
|
|
1078
|
+
],
|
|
1079
|
+
local_sequences={0: [("inputs.p1", 2, 0)]},
|
|
1080
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1081
|
+
path=tmp_path,
|
|
1082
|
+
)
|
|
1083
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1084
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1085
|
+
wk.tasks.t1.add_elements(
|
|
1086
|
+
sequences=[
|
|
1087
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1088
|
+
],
|
|
1089
|
+
propagate_to=[
|
|
1090
|
+
hf.ElementPropagation(task=wk.tasks.t2, nesting_order={"inputs.p2": 1}),
|
|
1091
|
+
],
|
|
1092
|
+
)
|
|
1093
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1094
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1095
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1096
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1097
|
+
new_elems_t2 = data_index_new[
|
|
1098
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1099
|
+
]
|
|
1100
|
+
assert new_elems_t1 == [
|
|
1101
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1102
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1103
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1104
|
+
] and new_elems_t2 == [
|
|
1105
|
+
["inputs.p2", "resources.any"],
|
|
1106
|
+
["inputs.p2", "resources.any"],
|
|
1107
|
+
["inputs.p2", "resources.any"],
|
|
1108
|
+
]
|
|
1109
|
+
|
|
1110
|
+
|
|
1111
|
+
def test_task_add_elements_sequence_with_propagation_into_sequence_expected_workflow_num_elements(
|
|
1112
|
+
tmp_path: Path,
|
|
1113
|
+
):
|
|
1114
|
+
wk = make_workflow(
|
|
1115
|
+
schemas_spec=[
|
|
1116
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1117
|
+
({"p2": None, "p3": None}, (), "t2"),
|
|
1118
|
+
],
|
|
1119
|
+
local_sequences={0: [("inputs.p1", 2, 1)], 1: [("inputs.p3", 3, 1)]},
|
|
1120
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1121
|
+
path=tmp_path,
|
|
1122
|
+
)
|
|
1123
|
+
num_elems = wk.num_elements
|
|
1124
|
+
wk.tasks.t1.add_elements(
|
|
1125
|
+
sequences=[
|
|
1126
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1127
|
+
],
|
|
1128
|
+
propagate_to=[
|
|
1129
|
+
hf.ElementPropagation(
|
|
1130
|
+
task=wk.tasks.t2, nesting_order={"inputs.p2": 1, "inputs.p3": 2}
|
|
1131
|
+
),
|
|
1132
|
+
],
|
|
1133
|
+
)
|
|
1134
|
+
num_elems_new = wk.num_elements
|
|
1135
|
+
assert num_elems_new - num_elems == 12
|
|
1136
|
+
|
|
1137
|
+
|
|
1138
|
+
def test_task_add_elements_sequence_with_propagation_into_sequence_expected_task_num_elements(
|
|
1139
|
+
tmp_path: Path,
|
|
1140
|
+
):
|
|
1141
|
+
wk = make_workflow(
|
|
1142
|
+
schemas_spec=[
|
|
1143
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1144
|
+
({"p2": None, "p3": None}, (), "t2"),
|
|
1145
|
+
],
|
|
1146
|
+
local_sequences={0: [("inputs.p1", 2, 1)], 1: [("inputs.p3", 3, 1)]},
|
|
1147
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1148
|
+
path=tmp_path,
|
|
1149
|
+
)
|
|
1150
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
1151
|
+
wk.tasks.t1.add_elements(
|
|
1152
|
+
sequences=[
|
|
1153
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1154
|
+
],
|
|
1155
|
+
propagate_to=[
|
|
1156
|
+
hf.ElementPropagation(
|
|
1157
|
+
task=wk.tasks.t2, nesting_order={"inputs.p2": 1, "inputs.p3": 2}
|
|
1158
|
+
),
|
|
1159
|
+
],
|
|
1160
|
+
)
|
|
1161
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
1162
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
1163
|
+
assert num_elems_diff[0] == 3 and num_elems_diff[1] == 9
|
|
1164
|
+
|
|
1165
|
+
|
|
1166
|
+
def test_task_add_elements_sequence_with_propagation_into_sequence_expected_new_data_index(
|
|
1167
|
+
tmp_path: Path,
|
|
1168
|
+
):
|
|
1169
|
+
wk = make_workflow(
|
|
1170
|
+
schemas_spec=[
|
|
1171
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1172
|
+
({"p2": None, "p3": None}, (), "t2"),
|
|
1173
|
+
],
|
|
1174
|
+
local_sequences={0: [("inputs.p1", 2, 1)], 1: [("inputs.p3", 3, 1)]},
|
|
1175
|
+
nesting_orders={1: {"inputs.p2": 0}},
|
|
1176
|
+
path=tmp_path,
|
|
1177
|
+
)
|
|
1178
|
+
|
|
1179
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1180
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1181
|
+
wk.tasks.t1.add_elements(
|
|
1182
|
+
sequences=[
|
|
1183
|
+
hf.ValueSequence("inputs.p1", values=[103, 104, 105], nesting_order=1)
|
|
1184
|
+
],
|
|
1185
|
+
propagate_to=[
|
|
1186
|
+
hf.ElementPropagation(
|
|
1187
|
+
task=wk.tasks.t2, nesting_order={"inputs.p2": 1, "inputs.p3": 2}
|
|
1188
|
+
),
|
|
1189
|
+
],
|
|
1190
|
+
)
|
|
1191
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1192
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1193
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1194
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1195
|
+
new_elems_t2 = data_index_new[
|
|
1196
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1197
|
+
]
|
|
1198
|
+
assert new_elems_t1 == [
|
|
1199
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1200
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1201
|
+
["inputs.p1", "outputs.p2", "resources.any"],
|
|
1202
|
+
] and new_elems_t2 == [
|
|
1203
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1204
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1205
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1206
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1207
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1208
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1209
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1210
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1211
|
+
["inputs.p2", "inputs.p3", "resources.any"],
|
|
1212
|
+
]
|
|
1213
|
+
|
|
1214
|
+
|
|
1215
|
+
def test_task_add_elements_multi_task_dependence_expected_workflow_num_elements(
|
|
1216
|
+
tmp_path: Path, param_p1: Parameter
|
|
1217
|
+
):
|
|
1218
|
+
wk = make_workflow(
|
|
1219
|
+
schemas_spec=[
|
|
1220
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1221
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1222
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1223
|
+
],
|
|
1224
|
+
local_inputs={0: ("p1",)},
|
|
1225
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1226
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1227
|
+
input_sources={2: {"p3": [hf.InputSource.task(1, "input")]}},
|
|
1228
|
+
path=tmp_path,
|
|
1229
|
+
)
|
|
1230
|
+
num_elems = wk.num_elements
|
|
1231
|
+
num_task_elems = [task.num_elements for task in wk.tasks]
|
|
1232
|
+
wk.tasks.t1.add_elements(
|
|
1233
|
+
inputs=[hf.InputValue(param_p1, 102)],
|
|
1234
|
+
propagate_to={
|
|
1235
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1236
|
+
"t3": {
|
|
1237
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1238
|
+
"input_sources": {"p3": [hf.InputSource.task(1, "input")]},
|
|
1239
|
+
},
|
|
1240
|
+
},
|
|
1241
|
+
)
|
|
1242
|
+
num_elems_new = wk.num_elements
|
|
1243
|
+
assert num_elems_new - num_elems == 7
|
|
1244
|
+
|
|
1245
|
+
num_task_elems_new = [task.num_elements for task in wk.tasks]
|
|
1246
|
+
num_elems_diff = [i - j for i, j in zip(num_task_elems_new, num_task_elems)]
|
|
1247
|
+
assert num_elems_diff == [1, 2, 4]
|
|
1248
|
+
|
|
1249
|
+
|
|
1250
|
+
def test_task_add_elements_multi_task_dependence_expected_task_num_elements_custom_input_source(
|
|
1251
|
+
tmp_path: Path, param_p1: Parameter
|
|
1252
|
+
):
|
|
1253
|
+
wk = make_workflow(
|
|
1254
|
+
schemas_spec=[
|
|
1255
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1256
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1257
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1258
|
+
],
|
|
1259
|
+
local_inputs={0: ("p1",)},
|
|
1260
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1261
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1262
|
+
input_sources={
|
|
1263
|
+
2: {"p3": [hf.InputSource.task(0)]}
|
|
1264
|
+
}, # override default (t2 input)
|
|
1265
|
+
path=tmp_path,
|
|
1266
|
+
)
|
|
1267
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
1268
|
+
wk.tasks.t1.add_elements(
|
|
1269
|
+
inputs=[hf.InputValue(param_p1, 102)],
|
|
1270
|
+
propagate_to={
|
|
1271
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1272
|
+
"t3": {
|
|
1273
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1274
|
+
"input_sources": {"p3": [hf.InputSource.task(0)]}, # override default
|
|
1275
|
+
},
|
|
1276
|
+
},
|
|
1277
|
+
)
|
|
1278
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
1279
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
1280
|
+
assert num_elems_diff == [1, 2, 2]
|
|
1281
|
+
|
|
1282
|
+
|
|
1283
|
+
def test_task_add_elements_multi_task_dependence_expected_new_data_index(
|
|
1284
|
+
tmp_path: Path, param_p1: Parameter
|
|
1285
|
+
):
|
|
1286
|
+
wk = make_workflow(
|
|
1287
|
+
schemas_spec=[
|
|
1288
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1289
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1290
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1291
|
+
],
|
|
1292
|
+
local_inputs={0: ("p1",)},
|
|
1293
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1294
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1295
|
+
input_sources={2: {"p3": [hf.InputSource.task(1, "input")]}},
|
|
1296
|
+
path=tmp_path,
|
|
1297
|
+
)
|
|
1298
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1299
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1300
|
+
t3_num_elems = wk.tasks.t3.num_elements
|
|
1301
|
+
wk.tasks.t1.add_elements(
|
|
1302
|
+
inputs=[hf.InputValue(param_p1, 102)],
|
|
1303
|
+
propagate_to={
|
|
1304
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1305
|
+
"t3": {
|
|
1306
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1307
|
+
"input_sources": {"p3": [hf.InputSource.task(1, "input")]},
|
|
1308
|
+
},
|
|
1309
|
+
},
|
|
1310
|
+
)
|
|
1311
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1312
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1313
|
+
t3_num_elems_new = wk.tasks.t3.num_elements
|
|
1314
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1315
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1316
|
+
new_elems_t2 = data_index_new[
|
|
1317
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1318
|
+
]
|
|
1319
|
+
new_elems_t3 = data_index_new[
|
|
1320
|
+
t1_num_elems_new
|
|
1321
|
+
+ t2_num_elems_new
|
|
1322
|
+
+ t3_num_elems : t1_num_elems_new
|
|
1323
|
+
+ t2_num_elems_new
|
|
1324
|
+
+ t3_num_elems_new
|
|
1325
|
+
]
|
|
1326
|
+
|
|
1327
|
+
assert (
|
|
1328
|
+
new_elems_t1 == [["inputs.p1", "outputs.p3", "resources.any"]]
|
|
1329
|
+
and new_elems_t2
|
|
1330
|
+
== [["inputs.p2", "inputs.p3", "outputs.p4", "resources.any"]] * 2
|
|
1331
|
+
and new_elems_t3 == [["inputs.p3", "inputs.p4", "resources.any"]] * 4
|
|
1332
|
+
)
|
|
1333
|
+
|
|
1334
|
+
|
|
1335
|
+
def test_task_add_elements_multi_task_dependence_expected_new_data_index_custom_input_source(
|
|
1336
|
+
tmp_path: Path, param_p1: Parameter
|
|
1337
|
+
):
|
|
1338
|
+
wk = make_workflow(
|
|
1339
|
+
schemas_spec=[
|
|
1340
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1341
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1342
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1343
|
+
],
|
|
1344
|
+
local_inputs={0: ("p1",)},
|
|
1345
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1346
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1347
|
+
input_sources={
|
|
1348
|
+
2: {"p3": [hf.InputSource.task(0)]}
|
|
1349
|
+
}, # override default (t2 input)
|
|
1350
|
+
path=tmp_path,
|
|
1351
|
+
)
|
|
1352
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1353
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1354
|
+
t3_num_elems = wk.tasks.t3.num_elements
|
|
1355
|
+
wk.tasks.t1.add_elements(
|
|
1356
|
+
inputs=[hf.InputValue(param_p1, 102)],
|
|
1357
|
+
propagate_to={
|
|
1358
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1359
|
+
"t3": {
|
|
1360
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1361
|
+
"input_sources": {"p3": [hf.InputSource.task(0)]}, # override default
|
|
1362
|
+
},
|
|
1363
|
+
},
|
|
1364
|
+
)
|
|
1365
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1366
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1367
|
+
t3_num_elems_new = wk.tasks.t3.num_elements
|
|
1368
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1369
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1370
|
+
new_elems_t2 = data_index_new[
|
|
1371
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1372
|
+
]
|
|
1373
|
+
new_elems_t3 = data_index_new[
|
|
1374
|
+
t1_num_elems_new
|
|
1375
|
+
+ t2_num_elems_new
|
|
1376
|
+
+ t3_num_elems : t1_num_elems_new
|
|
1377
|
+
+ t2_num_elems_new
|
|
1378
|
+
+ t3_num_elems_new
|
|
1379
|
+
]
|
|
1380
|
+
|
|
1381
|
+
assert (
|
|
1382
|
+
new_elems_t1 == [["inputs.p1", "outputs.p3", "resources.any"]]
|
|
1383
|
+
and new_elems_t2
|
|
1384
|
+
== [["inputs.p2", "inputs.p3", "outputs.p4", "resources.any"]] * 2
|
|
1385
|
+
and new_elems_t3 == [["inputs.p3", "inputs.p4", "resources.any"]] * 2
|
|
1386
|
+
)
|
|
1387
|
+
|
|
1388
|
+
|
|
1389
|
+
def test_task_add_elements_sequence_multi_task_dependence_workflow_num_elements(
|
|
1390
|
+
tmp_path: Path,
|
|
1391
|
+
):
|
|
1392
|
+
wk = make_workflow(
|
|
1393
|
+
schemas_spec=[
|
|
1394
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1395
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1396
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1397
|
+
],
|
|
1398
|
+
local_inputs={0: ("p1",)},
|
|
1399
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1400
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1401
|
+
input_sources={2: {"p3": [hf.InputSource.task(1, "input")]}},
|
|
1402
|
+
path=tmp_path,
|
|
1403
|
+
)
|
|
1404
|
+
num_elems = wk.num_elements
|
|
1405
|
+
wk.tasks.t1.add_elements(
|
|
1406
|
+
sequences=[
|
|
1407
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1408
|
+
],
|
|
1409
|
+
propagate_to={
|
|
1410
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1411
|
+
"t3": {
|
|
1412
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1413
|
+
"input_sources": {"p3": [hf.InputSource.task(1, "input")]},
|
|
1414
|
+
},
|
|
1415
|
+
},
|
|
1416
|
+
)
|
|
1417
|
+
num_elems_new = wk.num_elements
|
|
1418
|
+
assert num_elems_new - num_elems == 45
|
|
1419
|
+
|
|
1420
|
+
|
|
1421
|
+
def test_task_add_elements_sequence_multi_task_dependence_workflow_num_elements_custom_input_source(
|
|
1422
|
+
tmp_path: Path,
|
|
1423
|
+
):
|
|
1424
|
+
wk = make_workflow(
|
|
1425
|
+
schemas_spec=[
|
|
1426
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1427
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1428
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1429
|
+
],
|
|
1430
|
+
local_inputs={0: ("p1",)},
|
|
1431
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1432
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1433
|
+
input_sources={
|
|
1434
|
+
2: {"p3": [hf.InputSource.task(0)]}
|
|
1435
|
+
}, # override default (t2 input)
|
|
1436
|
+
path=tmp_path,
|
|
1437
|
+
)
|
|
1438
|
+
num_elems = wk.num_elements
|
|
1439
|
+
wk.tasks.t1.add_elements(
|
|
1440
|
+
sequences=[
|
|
1441
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1442
|
+
],
|
|
1443
|
+
propagate_to={
|
|
1444
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1445
|
+
"t3": {
|
|
1446
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1447
|
+
"input_sources": {"p3": [hf.InputSource.task(0)]}, # override default
|
|
1448
|
+
},
|
|
1449
|
+
},
|
|
1450
|
+
)
|
|
1451
|
+
num_elems_new = wk.num_elements
|
|
1452
|
+
assert num_elems_new - num_elems == 27
|
|
1453
|
+
|
|
1454
|
+
|
|
1455
|
+
def test_task_add_elements_sequence_multi_task_dependence_expected_task_num_elements(
|
|
1456
|
+
tmp_path: Path,
|
|
1457
|
+
):
|
|
1458
|
+
wk = make_workflow(
|
|
1459
|
+
schemas_spec=[
|
|
1460
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1461
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1462
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1463
|
+
],
|
|
1464
|
+
local_inputs={0: ("p1",)},
|
|
1465
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1466
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1467
|
+
input_sources={2: {"p3": [hf.InputSource.task(1, "input")]}},
|
|
1468
|
+
path=tmp_path,
|
|
1469
|
+
)
|
|
1470
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
1471
|
+
wk.tasks.t1.add_elements(
|
|
1472
|
+
sequences=[
|
|
1473
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1474
|
+
],
|
|
1475
|
+
propagate_to={
|
|
1476
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1477
|
+
"t3": {
|
|
1478
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1479
|
+
"input_sources": {"p3": [hf.InputSource.task(1, "input")]},
|
|
1480
|
+
},
|
|
1481
|
+
},
|
|
1482
|
+
)
|
|
1483
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
1484
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
1485
|
+
assert num_elems_diff == [3, 6, 36]
|
|
1486
|
+
|
|
1487
|
+
|
|
1488
|
+
def test_task_add_elements_sequence_multi_task_dependence_expected_task_num_elements_custom_input_source(
|
|
1489
|
+
tmp_path: Path,
|
|
1490
|
+
):
|
|
1491
|
+
wk = make_workflow(
|
|
1492
|
+
schemas_spec=[
|
|
1493
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1494
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1495
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1496
|
+
],
|
|
1497
|
+
local_inputs={0: ("p1",)},
|
|
1498
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1499
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1500
|
+
input_sources={
|
|
1501
|
+
2: {"p3": [hf.InputSource.task(0)]}
|
|
1502
|
+
}, # override default (t2 input)
|
|
1503
|
+
path=tmp_path,
|
|
1504
|
+
)
|
|
1505
|
+
num_elems = [task.num_elements for task in wk.tasks]
|
|
1506
|
+
wk.tasks.t1.add_elements(
|
|
1507
|
+
sequences=[
|
|
1508
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1509
|
+
],
|
|
1510
|
+
propagate_to={
|
|
1511
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1512
|
+
"t3": {
|
|
1513
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1514
|
+
"input_sources": {"p3": [hf.InputSource.task(0)]}, # override default
|
|
1515
|
+
},
|
|
1516
|
+
},
|
|
1517
|
+
)
|
|
1518
|
+
num_elems_new = [task.num_elements for task in wk.tasks]
|
|
1519
|
+
num_elems_diff = [i - j for i, j in zip(num_elems_new, num_elems)]
|
|
1520
|
+
assert num_elems_diff == [3, 6, 18]
|
|
1521
|
+
|
|
1522
|
+
|
|
1523
|
+
def test_task_add_elements_sequence_multi_task_dependence_expected_new_data_index(
|
|
1524
|
+
tmp_path: Path,
|
|
1525
|
+
):
|
|
1526
|
+
wk = make_workflow(
|
|
1527
|
+
schemas_spec=[
|
|
1528
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1529
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1530
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1531
|
+
],
|
|
1532
|
+
local_inputs={0: ("p1",)},
|
|
1533
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1534
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1535
|
+
input_sources={2: {"p3": [hf.InputSource.task(1, "input")]}},
|
|
1536
|
+
path=tmp_path,
|
|
1537
|
+
)
|
|
1538
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1539
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1540
|
+
t3_num_elems = wk.tasks.t3.num_elements
|
|
1541
|
+
wk.tasks.t1.add_elements(
|
|
1542
|
+
sequences=[
|
|
1543
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1544
|
+
],
|
|
1545
|
+
propagate_to={
|
|
1546
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1547
|
+
"t3": {
|
|
1548
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1549
|
+
"input_sources": {"p3": [hf.InputSource.task(1, "input")]},
|
|
1550
|
+
},
|
|
1551
|
+
},
|
|
1552
|
+
)
|
|
1553
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1554
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1555
|
+
t3_num_elems_new = wk.tasks.t3.num_elements
|
|
1556
|
+
|
|
1557
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1558
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1559
|
+
new_elems_t2 = data_index_new[
|
|
1560
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1561
|
+
]
|
|
1562
|
+
new_elems_t3 = data_index_new[
|
|
1563
|
+
t1_num_elems_new
|
|
1564
|
+
+ t2_num_elems_new
|
|
1565
|
+
+ t3_num_elems : t1_num_elems_new
|
|
1566
|
+
+ t2_num_elems_new
|
|
1567
|
+
+ t3_num_elems_new
|
|
1568
|
+
]
|
|
1569
|
+
assert (
|
|
1570
|
+
new_elems_t1 == [["inputs.p1", "outputs.p3", "resources.any"]] * 3
|
|
1571
|
+
and new_elems_t2
|
|
1572
|
+
== [["inputs.p2", "inputs.p3", "outputs.p4", "resources.any"]] * 6
|
|
1573
|
+
and new_elems_t3 == [["inputs.p3", "inputs.p4", "resources.any"]] * 36
|
|
1574
|
+
)
|
|
1575
|
+
|
|
1576
|
+
|
|
1577
|
+
def test_task_add_elements_sequence_multi_task_dependence_expected_new_data_index_custom_input_source(
|
|
1578
|
+
tmp_path: Path,
|
|
1579
|
+
):
|
|
1580
|
+
wk = make_workflow(
|
|
1581
|
+
schemas_spec=[
|
|
1582
|
+
({"p1": None}, ("p3",), "t1"),
|
|
1583
|
+
({"p2": None, "p3": None}, ("p4",), "t2"),
|
|
1584
|
+
({"p3": None, "p4": None}, (), "t3"),
|
|
1585
|
+
],
|
|
1586
|
+
local_inputs={0: ("p1",)},
|
|
1587
|
+
local_sequences={1: [("inputs.p2", 2, 1)]},
|
|
1588
|
+
nesting_orders={2: {"inputs.p3": 0, "inputs.p4": 1}},
|
|
1589
|
+
input_sources={
|
|
1590
|
+
2: {"p3": [hf.InputSource.task(0)]}
|
|
1591
|
+
}, # override default (t2 input)
|
|
1592
|
+
path=tmp_path,
|
|
1593
|
+
)
|
|
1594
|
+
t1_num_elems = wk.tasks.t1.num_elements
|
|
1595
|
+
t2_num_elems = wk.tasks.t2.num_elements
|
|
1596
|
+
t3_num_elems = wk.tasks.t3.num_elements
|
|
1597
|
+
wk.tasks.t1.add_elements(
|
|
1598
|
+
sequences=[
|
|
1599
|
+
hf.ValueSequence("inputs.p1", values=[102, 103, 104], nesting_order=1)
|
|
1600
|
+
],
|
|
1601
|
+
propagate_to={
|
|
1602
|
+
"t2": {"nesting_order": {"inputs.p2": 0, "inputs.p3": 1}},
|
|
1603
|
+
"t3": {
|
|
1604
|
+
"nesting_order": {"inputs.p3": 0, "inputs.p4": 1},
|
|
1605
|
+
"input_sources": {"p3": [hf.InputSource.task(0)]}, # override default
|
|
1606
|
+
},
|
|
1607
|
+
},
|
|
1608
|
+
)
|
|
1609
|
+
t1_num_elems_new = wk.tasks.t1.num_elements
|
|
1610
|
+
t2_num_elems_new = wk.tasks.t2.num_elements
|
|
1611
|
+
t3_num_elems_new = wk.tasks.t3.num_elements
|
|
1612
|
+
|
|
1613
|
+
data_index_new = [sorted(i.get_data_idx()) for i in wk.elements()]
|
|
1614
|
+
new_elems_t1 = data_index_new[t1_num_elems:t1_num_elems_new]
|
|
1615
|
+
new_elems_t2 = data_index_new[
|
|
1616
|
+
t1_num_elems_new + t2_num_elems : t1_num_elems_new + t2_num_elems_new
|
|
1617
|
+
]
|
|
1618
|
+
new_elems_t3 = data_index_new[
|
|
1619
|
+
t1_num_elems_new
|
|
1620
|
+
+ t2_num_elems_new
|
|
1621
|
+
+ t3_num_elems : t1_num_elems_new
|
|
1622
|
+
+ t2_num_elems_new
|
|
1623
|
+
+ t3_num_elems_new
|
|
1624
|
+
]
|
|
1625
|
+
assert (
|
|
1626
|
+
new_elems_t1 == [["inputs.p1", "outputs.p3", "resources.any"]] * 3
|
|
1627
|
+
and new_elems_t2
|
|
1628
|
+
== [["inputs.p2", "inputs.p3", "outputs.p4", "resources.any"]] * 6
|
|
1629
|
+
and new_elems_t3 == [["inputs.p3", "inputs.p4", "resources.any"]] * 18
|
|
1630
|
+
)
|
|
1631
|
+
|
|
1632
|
+
|
|
1633
|
+
def test_task_add_elements_simple_dependence_three_tasks(
|
|
1634
|
+
tmp_path: Path, param_p1: Parameter
|
|
1635
|
+
):
|
|
1636
|
+
wk = make_workflow(
|
|
1637
|
+
schemas_spec=[
|
|
1638
|
+
({"p1": None}, ("p2",), "t1"),
|
|
1639
|
+
({"p2": None}, ("p3",), "t2"),
|
|
1640
|
+
({"p3": None}, (), "t3"),
|
|
1641
|
+
],
|
|
1642
|
+
local_inputs={0: ("p1",)},
|
|
1643
|
+
path=tmp_path,
|
|
1644
|
+
)
|
|
1645
|
+
num_elems = [i.num_elements for i in wk.tasks]
|
|
1646
|
+
wk.tasks.t1.add_elements(
|
|
1647
|
+
inputs=[hf.InputValue(param_p1, 102)],
|
|
1648
|
+
propagate_to={"t2": {}, "t3": {}},
|
|
1649
|
+
)
|
|
1650
|
+
num_elems_new = [i.num_elements for i in wk.tasks]
|
|
1651
|
+
assert num_elems_new == [i + 1 for i in num_elems]
|
|
1652
|
+
|
|
1653
|
+
|
|
1654
|
+
def test_no_change_to_tasks_metadata_on_add_task_failure(tmp_path: Path):
|
|
1655
|
+
wk = make_workflow(
|
|
1656
|
+
schemas_spec=[({"p1": NullDefault.NULL}, (), "t1")],
|
|
1657
|
+
local_inputs={0: ("p1",)},
|
|
1658
|
+
path=tmp_path,
|
|
1659
|
+
)
|
|
1660
|
+
tasks_meta = copy.deepcopy(wk._store.get_tasks())
|
|
1661
|
+
|
|
1662
|
+
(s2,) = make_schemas(({"p1": NullDefault.NULL, "p3": NullDefault.NULL}, ()))
|
|
1663
|
+
t2 = hf.Task(schema=s2)
|
|
1664
|
+
with pytest.raises(MissingInputs) as exc_info:
|
|
1665
|
+
wk.add_task(t2)
|
|
1666
|
+
|
|
1667
|
+
assert wk._store.get_tasks() == tasks_meta
|
|
1668
|
+
|
|
1669
|
+
|
|
1670
|
+
def test_no_change_to_parameter_data_on_add_task_failure(
|
|
1671
|
+
tmp_path: Path, param_p2: Parameter, param_p3: Parameter
|
|
1672
|
+
):
|
|
1673
|
+
wk = make_workflow(
|
|
1674
|
+
schemas_spec=[({"p1": NullDefault.NULL}, (), "t1")],
|
|
1675
|
+
local_inputs={0: ("p1",)},
|
|
1676
|
+
path=tmp_path,
|
|
1677
|
+
)
|
|
1678
|
+
param_data: list = copy.deepcopy(wk.get_all_parameters())
|
|
1679
|
+
(s2,) = make_schemas(
|
|
1680
|
+
({"p1": NullDefault.NULL, "p2": NullDefault.NULL, "p3": NullDefault.NULL}, ())
|
|
1681
|
+
)
|
|
1682
|
+
t2 = hf.Task(schema=s2, inputs=[hf.InputValue(param_p2, 201)])
|
|
1683
|
+
with pytest.raises(MissingInputs) as exc_info:
|
|
1684
|
+
wk.add_task(t2)
|
|
1685
|
+
|
|
1686
|
+
assert wk.get_all_parameters() == param_data
|
|
1687
|
+
|
|
1688
|
+
|
|
1689
|
+
def test_expected_additional_parameter_data_on_add_task(
|
|
1690
|
+
tmp_path: Path, param_p3: Parameter
|
|
1691
|
+
):
|
|
1692
|
+
wk = make_workflow(
|
|
1693
|
+
schemas_spec=[({"p1": NullDefault.NULL}, (), "t1")],
|
|
1694
|
+
local_inputs={0: ("p1",)},
|
|
1695
|
+
path=tmp_path,
|
|
1696
|
+
)
|
|
1697
|
+
param_data = copy.deepcopy(wk.get_all_parameter_data())
|
|
1698
|
+
|
|
1699
|
+
(s2,) = make_schemas(({"p1": NullDefault.NULL, "p3": NullDefault.NULL}, ()))
|
|
1700
|
+
t2 = hf.Task(schema=s2, inputs=[hf.InputValue(param_p3, 301)])
|
|
1701
|
+
wk.add_task(t2)
|
|
1702
|
+
|
|
1703
|
+
param_data_new = wk.get_all_parameter_data()
|
|
1704
|
+
|
|
1705
|
+
new_keys = sorted(set(param_data_new).difference(param_data))
|
|
1706
|
+
new_data = [param_data_new[k] for k in new_keys]
|
|
1707
|
+
|
|
1708
|
+
# one new key for resources, one for param_p3 value
|
|
1709
|
+
assert len(new_data) == 2
|
|
1710
|
+
assert new_data[1] == 301
|
|
1711
|
+
|
|
1712
|
+
|
|
1713
|
+
def test_parameters_accepted_on_add_task(tmp_path: Path, param_p3: Parameter):
|
|
1714
|
+
wk = make_workflow(
|
|
1715
|
+
schemas_spec=[({"p1": None}, (), "t1")],
|
|
1716
|
+
local_inputs={0: ("p1",)},
|
|
1717
|
+
path=tmp_path,
|
|
1718
|
+
)
|
|
1719
|
+
(s2,) = make_schemas(({"p1": None, "p3": None}, ()))
|
|
1720
|
+
t2 = hf.Task(schema=s2, inputs=[hf.InputValue(param_p3, 301)])
|
|
1721
|
+
wk.add_task(t2)
|
|
1722
|
+
assert not wk._store._pending.add_parameters
|
|
1723
|
+
|
|
1724
|
+
|
|
1725
|
+
def test_parameters_pending_during_add_task(tmp_path: Path, param_p3: Parameter):
|
|
1726
|
+
wk = make_workflow(
|
|
1727
|
+
schemas_spec=[({"p1": None}, (), "t1")],
|
|
1728
|
+
local_inputs={0: ("p1",)},
|
|
1729
|
+
path=tmp_path,
|
|
1730
|
+
)
|
|
1731
|
+
(s2,) = make_schemas(({"p1": None, "p3": None}, ()))
|
|
1732
|
+
t2 = hf.Task(schema=s2, inputs=[hf.InputValue(param_p3, 301)])
|
|
1733
|
+
with wk.batch_update():
|
|
1734
|
+
wk.add_task(t2)
|
|
1735
|
+
assert wk._store._pending.add_parameters
|
|
1736
|
+
|
|
1737
|
+
|
|
1738
|
+
def test_add_task_after(workflow_w0: Workflow):
|
|
1739
|
+
new_task = hf.Task(schema=hf.TaskSchema(objective="after_t1", actions=[]))
|
|
1740
|
+
workflow_w0.add_task_after(new_task, workflow_w0.tasks.t1)
|
|
1741
|
+
assert [i.name for i in workflow_w0.tasks] == ["t1", "after_t1", "t2"]
|
|
1742
|
+
|
|
1743
|
+
|
|
1744
|
+
def test_add_task_after_no_ref(workflow_w0: Workflow):
|
|
1745
|
+
new_task = hf.Task(schema=hf.TaskSchema(objective="at_end", actions=[]))
|
|
1746
|
+
workflow_w0.add_task_after(new_task)
|
|
1747
|
+
assert [i.name for i in workflow_w0.tasks] == ["t1", "t2", "at_end"]
|
|
1748
|
+
|
|
1749
|
+
|
|
1750
|
+
def test_add_task_before(workflow_w0: Workflow):
|
|
1751
|
+
new_task = hf.Task(schema=hf.TaskSchema(objective="before_t2", actions=[]))
|
|
1752
|
+
workflow_w0.add_task_before(new_task, workflow_w0.tasks.t2)
|
|
1753
|
+
assert [i.name for i in workflow_w0.tasks] == ["t1", "before_t2", "t2"]
|
|
1754
|
+
|
|
1755
|
+
|
|
1756
|
+
def test_add_task_before_no_ref(workflow_w0: Workflow):
|
|
1757
|
+
new_task = hf.Task(schema=hf.TaskSchema(objective="at_start", actions=[]))
|
|
1758
|
+
workflow_w0.add_task_before(new_task)
|
|
1759
|
+
assert [i.name for i in workflow_w0.tasks] == ["at_start", "t1", "t2"]
|
|
1760
|
+
|
|
1761
|
+
|
|
1762
|
+
def test_parameter_two_modifying_actions_expected_data_indices(
|
|
1763
|
+
tmp_path: Path, act_env_1: ActionEnvironment, param_p1: Parameter
|
|
1764
|
+
):
|
|
1765
|
+
act1 = hf.Action(
|
|
1766
|
+
commands=[hf.Command("doSomething <<parameter:p1>>", stdout="<<parameter:p1>>")],
|
|
1767
|
+
environments=[act_env_1],
|
|
1768
|
+
)
|
|
1769
|
+
act2 = hf.Action(
|
|
1770
|
+
commands=[hf.Command("doSomething <<parameter:p1>>", stdout="<<parameter:p1>>")],
|
|
1771
|
+
environments=[act_env_1],
|
|
1772
|
+
)
|
|
1773
|
+
|
|
1774
|
+
s1 = hf.TaskSchema("t1", actions=[act1, act2], inputs=[param_p1], outputs=[param_p1])
|
|
1775
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue(param_p1, 101)])
|
|
1776
|
+
|
|
1777
|
+
wkt = hf.WorkflowTemplate(name="w3", tasks=[t1])
|
|
1778
|
+
wk = hf.Workflow.from_template(template=wkt, path=tmp_path)
|
|
1779
|
+
iter_0 = wk.tasks.t1.elements[0].iterations[0]
|
|
1780
|
+
act_runs = iter_0.action_runs
|
|
1781
|
+
|
|
1782
|
+
p1_idx_schema_in = iter_0.data_idx["inputs.p1"]
|
|
1783
|
+
p1_idx_schema_out = iter_0.data_idx["outputs.p1"]
|
|
1784
|
+
|
|
1785
|
+
p1_idx_0 = act_runs[0].data_idx["inputs.p1"]
|
|
1786
|
+
p1_idx_1 = act_runs[0].data_idx["outputs.p1"]
|
|
1787
|
+
p1_idx_2 = act_runs[1].data_idx["inputs.p1"]
|
|
1788
|
+
p1_idx_3 = act_runs[1].data_idx["outputs.p1"]
|
|
1789
|
+
|
|
1790
|
+
assert (
|
|
1791
|
+
p1_idx_schema_in == p1_idx_0
|
|
1792
|
+
and p1_idx_1 == p1_idx_2
|
|
1793
|
+
and p1_idx_3 == p1_idx_schema_out
|
|
1794
|
+
)
|
|
1795
|
+
|
|
1796
|
+
|
|
1797
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1798
|
+
def test_conditional_shell_schema_single_initialised_action(
|
|
1799
|
+
null_config, tmp_path: Path, store: str
|
|
1800
|
+
):
|
|
1801
|
+
rules = {
|
|
1802
|
+
"posix": hf.ActionRule(
|
|
1803
|
+
rule=hf.Rule(path="resources.os_name", condition=Value.equal_to("posix"))
|
|
1804
|
+
),
|
|
1805
|
+
"nt": hf.ActionRule(
|
|
1806
|
+
rule=hf.Rule(path="resources.os_name", condition=Value.equal_to("nt"))
|
|
1807
|
+
),
|
|
1808
|
+
}
|
|
1809
|
+
s1 = hf.TaskSchema(
|
|
1810
|
+
objective="test_conditional_on_shell",
|
|
1811
|
+
inputs=[hf.SchemaInput("p1")],
|
|
1812
|
+
outputs=[hf.SchemaInput("p2")],
|
|
1813
|
+
actions=[
|
|
1814
|
+
hf.Action(
|
|
1815
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1816
|
+
commands=[
|
|
1817
|
+
hf.Command(
|
|
1818
|
+
command="echo $((<<parameter:p1>> + 100))",
|
|
1819
|
+
stdout="<<parameter:p2>>",
|
|
1820
|
+
)
|
|
1821
|
+
],
|
|
1822
|
+
rules=[rules["posix"]],
|
|
1823
|
+
),
|
|
1824
|
+
hf.Action(
|
|
1825
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1826
|
+
commands=[
|
|
1827
|
+
hf.Command(
|
|
1828
|
+
command="Write-Output ((<<parameter:p1>> + 100))",
|
|
1829
|
+
stdout="<<parameter:p2>>",
|
|
1830
|
+
)
|
|
1831
|
+
],
|
|
1832
|
+
rules=[rules["nt"]],
|
|
1833
|
+
),
|
|
1834
|
+
],
|
|
1835
|
+
)
|
|
1836
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue("p1", 101)])
|
|
1837
|
+
wk = hf.Workflow.from_template_data(
|
|
1838
|
+
tasks=[t1],
|
|
1839
|
+
template_name="w1",
|
|
1840
|
+
overwrite=True,
|
|
1841
|
+
path=tmp_path,
|
|
1842
|
+
store=store,
|
|
1843
|
+
)
|
|
1844
|
+
action_runs = wk.tasks[0].elements[0].iterations[0].action_runs
|
|
1845
|
+
assert len(action_runs) == 1
|
|
1846
|
+
assert wk.tasks[0].elements[0].iterations[0].EARs_initialised
|
|
1847
|
+
assert action_runs[0].action.rules[0] == rules[os.name]
|
|
1848
|
+
|
|
1849
|
+
|
|
1850
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1851
|
+
def test_element_iteration_EARs_initialised_on_make_workflow(
|
|
1852
|
+
null_config, tmp_path: Path, store: str
|
|
1853
|
+
):
|
|
1854
|
+
s1 = hf.TaskSchema(
|
|
1855
|
+
objective="t1",
|
|
1856
|
+
inputs=[hf.SchemaInput("p1")],
|
|
1857
|
+
outputs=[hf.SchemaInput("p2")],
|
|
1858
|
+
actions=[
|
|
1859
|
+
hf.Action(
|
|
1860
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1861
|
+
commands=[
|
|
1862
|
+
hf.Command(
|
|
1863
|
+
command="echo $((<<parameter:p1>> + 100))",
|
|
1864
|
+
stdout="<<parameter:p2>>",
|
|
1865
|
+
)
|
|
1866
|
+
],
|
|
1867
|
+
),
|
|
1868
|
+
],
|
|
1869
|
+
)
|
|
1870
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue("p1", 101)])
|
|
1871
|
+
wk = hf.Workflow.from_template_data(
|
|
1872
|
+
tasks=[t1],
|
|
1873
|
+
template_name="w1",
|
|
1874
|
+
overwrite=True,
|
|
1875
|
+
path=tmp_path,
|
|
1876
|
+
store=store,
|
|
1877
|
+
)
|
|
1878
|
+
assert wk.tasks[0].elements[0].iterations[0].EARs_initialised
|
|
1879
|
+
assert len(wk.tasks[0].elements[0].iterations[0].action_runs) == 1
|
|
1880
|
+
|
|
1881
|
+
|
|
1882
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1883
|
+
def test_element_iteration_EARs_initialised_on_make_workflow_with_no_actions(
|
|
1884
|
+
null_config, tmp_path: Path, store: str
|
|
1885
|
+
):
|
|
1886
|
+
s1 = hf.TaskSchema(
|
|
1887
|
+
objective="t1",
|
|
1888
|
+
inputs=[hf.SchemaInput("p1")],
|
|
1889
|
+
actions=[],
|
|
1890
|
+
)
|
|
1891
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue("p1", 101)])
|
|
1892
|
+
wk = hf.Workflow.from_template_data(
|
|
1893
|
+
tasks=[t1],
|
|
1894
|
+
template_name="w1",
|
|
1895
|
+
overwrite=True,
|
|
1896
|
+
path=tmp_path,
|
|
1897
|
+
store=store,
|
|
1898
|
+
)
|
|
1899
|
+
assert wk.tasks[0].elements[0].iterations[0].EARs_initialised
|
|
1900
|
+
assert not wk.tasks[0].elements[0].iterations[0].action_runs
|
|
1901
|
+
|
|
1902
|
+
|
|
1903
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1904
|
+
def test_element_iteration_EARs_not_initialised_on_make_workflow_due_to_unset(
|
|
1905
|
+
null_config, tmp_path: Path, store: str
|
|
1906
|
+
):
|
|
1907
|
+
s1 = hf.TaskSchema(
|
|
1908
|
+
objective="t1",
|
|
1909
|
+
inputs=[hf.SchemaInput("p1")],
|
|
1910
|
+
outputs=[hf.SchemaInput("p2")],
|
|
1911
|
+
actions=[
|
|
1912
|
+
hf.Action(
|
|
1913
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1914
|
+
commands=[
|
|
1915
|
+
hf.Command(
|
|
1916
|
+
command="echo $((<<parameter:p1>> + 100))",
|
|
1917
|
+
stdout="<<parameter:p2>>",
|
|
1918
|
+
)
|
|
1919
|
+
],
|
|
1920
|
+
),
|
|
1921
|
+
],
|
|
1922
|
+
)
|
|
1923
|
+
s2 = hf.TaskSchema(
|
|
1924
|
+
objective="t2",
|
|
1925
|
+
inputs=[hf.SchemaInput("p2")],
|
|
1926
|
+
outputs=[hf.SchemaInput("p3")],
|
|
1927
|
+
actions=[
|
|
1928
|
+
hf.Action(
|
|
1929
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1930
|
+
commands=[
|
|
1931
|
+
hf.Command(
|
|
1932
|
+
command="echo $((<<parameter:p2>> + 100))",
|
|
1933
|
+
stdout="<<parameter:p3>>",
|
|
1934
|
+
)
|
|
1935
|
+
],
|
|
1936
|
+
rules=[hf.ActionRule(path="inputs.p2", condition=Value.less_than(500))],
|
|
1937
|
+
),
|
|
1938
|
+
],
|
|
1939
|
+
)
|
|
1940
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue("p1", 101)])
|
|
1941
|
+
t2 = hf.Task(schema=[s2])
|
|
1942
|
+
wk = hf.Workflow.from_template_data(
|
|
1943
|
+
tasks=[t1, t2],
|
|
1944
|
+
template_name="w1",
|
|
1945
|
+
overwrite=True,
|
|
1946
|
+
path=tmp_path,
|
|
1947
|
+
store=store,
|
|
1948
|
+
)
|
|
1949
|
+
# second task cannot initialise runs because it depends on the value of an output of
|
|
1950
|
+
# the first task:
|
|
1951
|
+
assert not wk.tasks[1].elements[0].iterations[0].EARs_initialised
|
|
1952
|
+
|
|
1953
|
+
|
|
1954
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1955
|
+
def test_element_iteration_EARs_initialised_on_make_workflow_with_no_valid_actions(
|
|
1956
|
+
null_config, tmp_path: Path, store: str
|
|
1957
|
+
):
|
|
1958
|
+
rules = {
|
|
1959
|
+
"posix": hf.ActionRule(
|
|
1960
|
+
rule=hf.Rule(path="resources.os_name", condition=Value.equal_to("posix"))
|
|
1961
|
+
),
|
|
1962
|
+
"nt": hf.ActionRule(
|
|
1963
|
+
rule=hf.Rule(path="resources.os_name", condition=Value.equal_to("nt"))
|
|
1964
|
+
),
|
|
1965
|
+
}
|
|
1966
|
+
s1 = hf.TaskSchema(
|
|
1967
|
+
objective="test_conditional_on_shell",
|
|
1968
|
+
inputs=[hf.SchemaInput("p1")],
|
|
1969
|
+
outputs=[hf.SchemaInput("p2")],
|
|
1970
|
+
actions=[
|
|
1971
|
+
hf.Action(
|
|
1972
|
+
environments=[hf.ActionEnvironment("null_env")],
|
|
1973
|
+
commands=[
|
|
1974
|
+
hf.Command(
|
|
1975
|
+
command="some command that uses <<parameter:p1>>",
|
|
1976
|
+
stdout="<<parameter:p2>>",
|
|
1977
|
+
)
|
|
1978
|
+
],
|
|
1979
|
+
rules=[rules["posix"] if os.name == "nt" else rules["nt"]],
|
|
1980
|
+
),
|
|
1981
|
+
],
|
|
1982
|
+
)
|
|
1983
|
+
t1 = hf.Task(schema=[s1], inputs=[hf.InputValue("p1", 101)])
|
|
1984
|
+
wk = hf.Workflow.from_template_data(
|
|
1985
|
+
tasks=[t1],
|
|
1986
|
+
template_name="w1",
|
|
1987
|
+
overwrite=True,
|
|
1988
|
+
path=tmp_path,
|
|
1989
|
+
store=store,
|
|
1990
|
+
)
|
|
1991
|
+
action_runs = wk.tasks[0].elements[0].iterations[0].action_runs
|
|
1992
|
+
assert len(action_runs) == 0
|
|
1993
|
+
assert wk.tasks[0].elements[0].iterations[0].EARs_initialised
|
|
1994
|
+
|
|
1995
|
+
|
|
1996
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
1997
|
+
def test_get_merged_parameter_data_unset_data_raise(
|
|
1998
|
+
null_config, tmp_path: Path, store: str
|
|
1999
|
+
):
|
|
2000
|
+
s1 = hf.TaskSchema(
|
|
2001
|
+
objective="t1",
|
|
2002
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2003
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2004
|
+
actions=[
|
|
2005
|
+
hf.Action(
|
|
2006
|
+
commands=[
|
|
2007
|
+
hf.Command(
|
|
2008
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2009
|
+
stdout="<<parameter:p2>>",
|
|
2010
|
+
)
|
|
2011
|
+
]
|
|
2012
|
+
)
|
|
2013
|
+
],
|
|
2014
|
+
)
|
|
2015
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue("p1", value=1)])
|
|
2016
|
+
wk = hf.Workflow.from_template_data(
|
|
2017
|
+
tasks=[t1],
|
|
2018
|
+
template_name="w1",
|
|
2019
|
+
overwrite=True,
|
|
2020
|
+
path=tmp_path,
|
|
2021
|
+
store=store,
|
|
2022
|
+
)
|
|
2023
|
+
data_idx = wk.tasks.t1.elements[0].get_data_idx()
|
|
2024
|
+
with pytest.raises(UnsetParameterDataError):
|
|
2025
|
+
wk.tasks.t1._get_merged_parameter_data(
|
|
2026
|
+
data_index=data_idx,
|
|
2027
|
+
path="outputs.p2",
|
|
2028
|
+
raise_on_unset=True,
|
|
2029
|
+
)
|
|
2030
|
+
|
|
2031
|
+
|
|
2032
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2033
|
+
def test_get_merged_parameter_data_unset_data_no_raise(
|
|
2034
|
+
null_config, tmp_path: Path, store: str
|
|
2035
|
+
):
|
|
2036
|
+
s1 = hf.TaskSchema(
|
|
2037
|
+
objective="t1",
|
|
2038
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2039
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2040
|
+
actions=[
|
|
2041
|
+
hf.Action(
|
|
2042
|
+
commands=[
|
|
2043
|
+
hf.Command(
|
|
2044
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2045
|
+
stdout="<<parameter:p2>>",
|
|
2046
|
+
)
|
|
2047
|
+
]
|
|
2048
|
+
)
|
|
2049
|
+
],
|
|
2050
|
+
)
|
|
2051
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue("p1", value=1)])
|
|
2052
|
+
wk = hf.Workflow.from_template_data(
|
|
2053
|
+
tasks=[t1],
|
|
2054
|
+
template_name="w1",
|
|
2055
|
+
overwrite=True,
|
|
2056
|
+
path=tmp_path,
|
|
2057
|
+
store=store,
|
|
2058
|
+
)
|
|
2059
|
+
data_idx = wk.tasks.t1.elements[0].get_data_idx()
|
|
2060
|
+
assert None == wk.tasks.t1._get_merged_parameter_data(
|
|
2061
|
+
data_index=data_idx,
|
|
2062
|
+
path="outputs.p2",
|
|
2063
|
+
raise_on_unset=False,
|
|
2064
|
+
)
|
|
2065
|
+
|
|
2066
|
+
|
|
2067
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2068
|
+
def test_get_merged_parameter_data_missing_data_raise(
|
|
2069
|
+
null_config, tmp_path: Path, store: str
|
|
2070
|
+
):
|
|
2071
|
+
s1 = hf.TaskSchema(
|
|
2072
|
+
objective="t1",
|
|
2073
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2074
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2075
|
+
actions=[
|
|
2076
|
+
hf.Action(
|
|
2077
|
+
commands=[
|
|
2078
|
+
hf.Command(
|
|
2079
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2080
|
+
stdout="<<parameter:p2>>",
|
|
2081
|
+
)
|
|
2082
|
+
]
|
|
2083
|
+
)
|
|
2084
|
+
],
|
|
2085
|
+
)
|
|
2086
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue("p1", value=1)])
|
|
2087
|
+
wk = hf.Workflow.from_template_data(
|
|
2088
|
+
tasks=[t1],
|
|
2089
|
+
template_name="w1",
|
|
2090
|
+
overwrite=True,
|
|
2091
|
+
path=tmp_path,
|
|
2092
|
+
store=store,
|
|
2093
|
+
)
|
|
2094
|
+
data_idx = wk.tasks.t1.elements[0].get_data_idx()
|
|
2095
|
+
with pytest.raises(ValueError):
|
|
2096
|
+
wk.tasks.t1._get_merged_parameter_data(
|
|
2097
|
+
data_index=data_idx,
|
|
2098
|
+
path="inputs.p4",
|
|
2099
|
+
raise_on_missing=True,
|
|
2100
|
+
)
|
|
2101
|
+
|
|
2102
|
+
|
|
2103
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2104
|
+
def test_get_merged_parameter_data_missing_data_no_raise(
|
|
2105
|
+
null_config, tmp_path: Path, store: str
|
|
2106
|
+
):
|
|
2107
|
+
s1 = hf.TaskSchema(
|
|
2108
|
+
objective="t1",
|
|
2109
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2110
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2111
|
+
actions=[
|
|
2112
|
+
hf.Action(
|
|
2113
|
+
commands=[
|
|
2114
|
+
hf.Command(
|
|
2115
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2116
|
+
stdout="<<parameter:p2>>",
|
|
2117
|
+
)
|
|
2118
|
+
]
|
|
2119
|
+
)
|
|
2120
|
+
],
|
|
2121
|
+
)
|
|
2122
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue("p1", value=1)])
|
|
2123
|
+
wk = hf.Workflow.from_template_data(
|
|
2124
|
+
tasks=[t1],
|
|
2125
|
+
template_name="w1",
|
|
2126
|
+
overwrite=True,
|
|
2127
|
+
path=tmp_path,
|
|
2128
|
+
store=store,
|
|
2129
|
+
)
|
|
2130
|
+
data_idx = wk.tasks.t1.elements[0].get_data_idx()
|
|
2131
|
+
assert None == wk.tasks.t1._get_merged_parameter_data(
|
|
2132
|
+
data_index=data_idx,
|
|
2133
|
+
path="inputs.p4",
|
|
2134
|
+
raise_on_missing=False,
|
|
2135
|
+
)
|
|
2136
|
+
|
|
2137
|
+
|
|
2138
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2139
|
+
def test_get_merged_parameter_data_group_unset_data_raise(
|
|
2140
|
+
null_config, tmp_path: Path, store: str
|
|
2141
|
+
):
|
|
2142
|
+
s1 = hf.TaskSchema(
|
|
2143
|
+
objective="t1",
|
|
2144
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2145
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2146
|
+
actions=[
|
|
2147
|
+
hf.Action(
|
|
2148
|
+
commands=[
|
|
2149
|
+
hf.Command(
|
|
2150
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2151
|
+
stdout="<<parameter:p2>>",
|
|
2152
|
+
)
|
|
2153
|
+
]
|
|
2154
|
+
)
|
|
2155
|
+
],
|
|
2156
|
+
)
|
|
2157
|
+
s2 = hf.TaskSchema(
|
|
2158
|
+
objective="t2",
|
|
2159
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p2"), group="my_group")],
|
|
2160
|
+
)
|
|
2161
|
+
t1 = hf.Task(
|
|
2162
|
+
schema=s1,
|
|
2163
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[1, 2], nesting_order=0)],
|
|
2164
|
+
groups=[hf.ElementGroup(name="my_group")],
|
|
2165
|
+
)
|
|
2166
|
+
t2 = hf.Task(schema=s2)
|
|
2167
|
+
wk = hf.Workflow.from_template_data(
|
|
2168
|
+
tasks=[t1, t2],
|
|
2169
|
+
template_name="w1",
|
|
2170
|
+
overwrite=True,
|
|
2171
|
+
path=tmp_path,
|
|
2172
|
+
store=store,
|
|
2173
|
+
)
|
|
2174
|
+
data_idx_t1 = wk.tasks.t1.elements[0].get_data_idx()
|
|
2175
|
+
data_idx_t2 = wk.tasks.t2.elements[0].get_data_idx()
|
|
2176
|
+
with pytest.raises(UnsetParameterDataError):
|
|
2177
|
+
wk.tasks.t1._get_merged_parameter_data(
|
|
2178
|
+
data_index=data_idx_t1,
|
|
2179
|
+
path="outputs.p2",
|
|
2180
|
+
raise_on_unset=True,
|
|
2181
|
+
)
|
|
2182
|
+
with pytest.raises(UnsetParameterDataError):
|
|
2183
|
+
wk.tasks.t2._get_merged_parameter_data(
|
|
2184
|
+
data_index=data_idx_t2,
|
|
2185
|
+
path="inputs.p2",
|
|
2186
|
+
raise_on_unset=True,
|
|
2187
|
+
)
|
|
2188
|
+
|
|
2189
|
+
|
|
2190
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2191
|
+
def test_get_merged_parameter_data_group_unset_data_no_raise(
|
|
2192
|
+
null_config, tmp_path: Path, store: str
|
|
2193
|
+
):
|
|
2194
|
+
s1 = hf.TaskSchema(
|
|
2195
|
+
objective="t1",
|
|
2196
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2197
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2198
|
+
actions=[
|
|
2199
|
+
hf.Action(
|
|
2200
|
+
commands=[
|
|
2201
|
+
hf.Command(
|
|
2202
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2203
|
+
stdout="<<parameter:p2>>",
|
|
2204
|
+
)
|
|
2205
|
+
]
|
|
2206
|
+
)
|
|
2207
|
+
],
|
|
2208
|
+
)
|
|
2209
|
+
s2 = hf.TaskSchema(
|
|
2210
|
+
objective="t2",
|
|
2211
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p2"), group="my_group")],
|
|
2212
|
+
)
|
|
2213
|
+
t1 = hf.Task(
|
|
2214
|
+
schema=s1,
|
|
2215
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[1, 2], nesting_order=0)],
|
|
2216
|
+
groups=[hf.ElementGroup(name="my_group")],
|
|
2217
|
+
)
|
|
2218
|
+
t2 = hf.Task(schema=s2)
|
|
2219
|
+
wk = hf.Workflow.from_template_data(
|
|
2220
|
+
tasks=[t1, t2],
|
|
2221
|
+
template_name="w1",
|
|
2222
|
+
overwrite=True,
|
|
2223
|
+
path=tmp_path,
|
|
2224
|
+
store=store,
|
|
2225
|
+
)
|
|
2226
|
+
data_idx_t1 = wk.tasks.t1.elements[0].get_data_idx()
|
|
2227
|
+
data_idx_t2 = wk.tasks.t2.elements[0].get_data_idx()
|
|
2228
|
+
assert None == wk.tasks.t1._get_merged_parameter_data(
|
|
2229
|
+
data_index=data_idx_t1,
|
|
2230
|
+
path="outputs.p2",
|
|
2231
|
+
raise_on_unset=False,
|
|
2232
|
+
)
|
|
2233
|
+
assert [None, None] == wk.tasks.t2._get_merged_parameter_data(
|
|
2234
|
+
data_index=data_idx_t2,
|
|
2235
|
+
path="inputs.p2",
|
|
2236
|
+
raise_on_unset=False,
|
|
2237
|
+
)
|
|
2238
|
+
|
|
2239
|
+
|
|
2240
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2241
|
+
def test_get_merged_parameter_data_group_missing_data_raise(
|
|
2242
|
+
null_config, tmp_path: Path, store: str
|
|
2243
|
+
):
|
|
2244
|
+
s1 = hf.TaskSchema(
|
|
2245
|
+
objective="t1",
|
|
2246
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2247
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2248
|
+
actions=[
|
|
2249
|
+
hf.Action(
|
|
2250
|
+
commands=[
|
|
2251
|
+
hf.Command(
|
|
2252
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2253
|
+
stdout="<<parameter:p2>>",
|
|
2254
|
+
)
|
|
2255
|
+
]
|
|
2256
|
+
)
|
|
2257
|
+
],
|
|
2258
|
+
)
|
|
2259
|
+
s2 = hf.TaskSchema(
|
|
2260
|
+
objective="t2",
|
|
2261
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p2"), group="my_group")],
|
|
2262
|
+
)
|
|
2263
|
+
t1 = hf.Task(
|
|
2264
|
+
schema=s1,
|
|
2265
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[1, 2], nesting_order=0)],
|
|
2266
|
+
groups=[hf.ElementGroup(name="my_group")],
|
|
2267
|
+
)
|
|
2268
|
+
t2 = hf.Task(schema=s2)
|
|
2269
|
+
wk = hf.Workflow.from_template_data(
|
|
2270
|
+
tasks=[t1, t2],
|
|
2271
|
+
template_name="w1",
|
|
2272
|
+
overwrite=True,
|
|
2273
|
+
path=tmp_path,
|
|
2274
|
+
store=store,
|
|
2275
|
+
)
|
|
2276
|
+
data_idx_t1 = wk.tasks.t1.elements[0].get_data_idx()
|
|
2277
|
+
data_idx_t2 = wk.tasks.t2.elements[0].get_data_idx()
|
|
2278
|
+
with pytest.raises(ValueError):
|
|
2279
|
+
wk.tasks.t1._get_merged_parameter_data(
|
|
2280
|
+
data_index=data_idx_t1,
|
|
2281
|
+
path="outputs.p4",
|
|
2282
|
+
raise_on_missing=True,
|
|
2283
|
+
)
|
|
2284
|
+
with pytest.raises(ValueError):
|
|
2285
|
+
wk.tasks.t2._get_merged_parameter_data(
|
|
2286
|
+
data_index=data_idx_t2,
|
|
2287
|
+
path="inputs.p4",
|
|
2288
|
+
raise_on_missing=True,
|
|
2289
|
+
)
|
|
2290
|
+
|
|
2291
|
+
|
|
2292
|
+
@pytest.mark.parametrize("store", ["json", "zarr"])
|
|
2293
|
+
def test_get_merged_parameter_data_group_missing_data_no_raise(
|
|
2294
|
+
null_config, tmp_path: Path, store: str
|
|
2295
|
+
):
|
|
2296
|
+
s1 = hf.TaskSchema(
|
|
2297
|
+
objective="t1",
|
|
2298
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2299
|
+
outputs=[hf.SchemaInput(parameter=hf.Parameter("p2"))],
|
|
2300
|
+
actions=[
|
|
2301
|
+
hf.Action(
|
|
2302
|
+
commands=[
|
|
2303
|
+
hf.Command(
|
|
2304
|
+
command="Write-Output (<<parameter:p1>> + 100)",
|
|
2305
|
+
stdout="<<parameter:p2>>",
|
|
2306
|
+
)
|
|
2307
|
+
]
|
|
2308
|
+
)
|
|
2309
|
+
],
|
|
2310
|
+
)
|
|
2311
|
+
s2 = hf.TaskSchema(
|
|
2312
|
+
objective="t2",
|
|
2313
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p2"), group="my_group")],
|
|
2314
|
+
)
|
|
2315
|
+
t1 = hf.Task(
|
|
2316
|
+
schema=s1,
|
|
2317
|
+
sequences=[hf.ValueSequence("inputs.p1", values=[1, 2], nesting_order=0)],
|
|
2318
|
+
groups=[hf.ElementGroup(name="my_group")],
|
|
2319
|
+
)
|
|
2320
|
+
t2 = hf.Task(schema=s2)
|
|
2321
|
+
wk = hf.Workflow.from_template_data(
|
|
2322
|
+
tasks=[t1, t2],
|
|
2323
|
+
template_name="w1",
|
|
2324
|
+
overwrite=True,
|
|
2325
|
+
path=tmp_path,
|
|
2326
|
+
store=store,
|
|
2327
|
+
)
|
|
2328
|
+
data_idx_t1 = wk.tasks.t1.elements[0].get_data_idx()
|
|
2329
|
+
data_idx_t2 = wk.tasks.t2.elements[0].get_data_idx()
|
|
2330
|
+
assert None == wk.tasks.t1._get_merged_parameter_data(
|
|
2331
|
+
data_index=data_idx_t1,
|
|
2332
|
+
path="outputs.p4",
|
|
2333
|
+
raise_on_missing=False,
|
|
2334
|
+
)
|
|
2335
|
+
assert None == wk.tasks.t2._get_merged_parameter_data(
|
|
2336
|
+
data_index=data_idx_t2,
|
|
2337
|
+
path="inputs.p4",
|
|
2338
|
+
raise_on_missing=False,
|
|
2339
|
+
)
|
|
2340
|
+
|
|
2341
|
+
|
|
2342
|
+
@pytest.fixture
|
|
2343
|
+
def path_to_PV_classes_workflow(null_config, tmp_path: Path) -> Workflow:
|
|
2344
|
+
s1 = hf.TaskSchema(
|
|
2345
|
+
objective="t1",
|
|
2346
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1c"))],
|
|
2347
|
+
actions=[
|
|
2348
|
+
hf.Action(commands=[hf.Command("Write-Output (<<parameter:p1c>> + 100)")])
|
|
2349
|
+
],
|
|
2350
|
+
)
|
|
2351
|
+
p1_value = P1(a=10, sub_param=P1_sub_param(e=5))
|
|
2352
|
+
t1 = hf.Task(schema=s1, inputs=[hf.InputValue("p1c", value=p1_value)])
|
|
2353
|
+
wk = hf.Workflow.from_template_data(
|
|
2354
|
+
tasks=[t1],
|
|
2355
|
+
template_name="w1",
|
|
2356
|
+
overwrite=True,
|
|
2357
|
+
path=tmp_path,
|
|
2358
|
+
)
|
|
2359
|
+
return wk
|
|
2360
|
+
|
|
2361
|
+
|
|
2362
|
+
def test_path_to_PV_classes(path_to_PV_classes_workflow: Workflow):
|
|
2363
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes("inputs.p1c") == {
|
|
2364
|
+
"inputs.p1c": P1,
|
|
2365
|
+
}
|
|
2366
|
+
|
|
2367
|
+
|
|
2368
|
+
def test_path_to_PV_classes_sub_data(path_to_PV_classes_workflow: Workflow):
|
|
2369
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes("inputs.p1c.a") == {
|
|
2370
|
+
"inputs.p1c": P1,
|
|
2371
|
+
}
|
|
2372
|
+
|
|
2373
|
+
|
|
2374
|
+
def test_path_to_PV_classes_sub_parameter(path_to_PV_classes_workflow: Workflow):
|
|
2375
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(
|
|
2376
|
+
"inputs.p1c.sub_param"
|
|
2377
|
+
) == {
|
|
2378
|
+
"inputs.p1c": P1,
|
|
2379
|
+
"inputs.p1c.sub_param": P1_sub_param,
|
|
2380
|
+
}
|
|
2381
|
+
|
|
2382
|
+
|
|
2383
|
+
def test_path_to_PV_classes_multiple_sub_parameters(
|
|
2384
|
+
path_to_PV_classes_workflow: Workflow,
|
|
2385
|
+
):
|
|
2386
|
+
paths = ["inputs.p1c.sub_param", "inputs.p1c.sub_param_2"]
|
|
2387
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(*paths) == {
|
|
2388
|
+
"inputs.p1c": P1,
|
|
2389
|
+
"inputs.p1c.sub_param": P1_sub_param,
|
|
2390
|
+
"inputs.p1c.sub_param_2": P1_sub_param_2,
|
|
2391
|
+
}
|
|
2392
|
+
|
|
2393
|
+
|
|
2394
|
+
def test_path_to_PV_classes_multiple_sub_parameter_attr(
|
|
2395
|
+
path_to_PV_classes_workflow: Workflow,
|
|
2396
|
+
):
|
|
2397
|
+
paths = ["inputs.p1c.sub_param.e"]
|
|
2398
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(*paths) == {
|
|
2399
|
+
"inputs.p1c": P1,
|
|
2400
|
+
"inputs.p1c.sub_param": P1_sub_param,
|
|
2401
|
+
}
|
|
2402
|
+
|
|
2403
|
+
|
|
2404
|
+
def test_path_to_PV_classes_inputs_only_path_ignored(
|
|
2405
|
+
path_to_PV_classes_workflow: Workflow,
|
|
2406
|
+
):
|
|
2407
|
+
paths_1 = ["inputs", "inputs.p1c"]
|
|
2408
|
+
paths_2 = ["inputs.p1c"]
|
|
2409
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(
|
|
2410
|
+
*paths_1
|
|
2411
|
+
) == path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(*paths_2)
|
|
2412
|
+
|
|
2413
|
+
|
|
2414
|
+
def test_path_to_PV_classes_resources_path_ignored(path_to_PV_classes_workflow: Workflow):
|
|
2415
|
+
paths_1 = ["resources", "inputs.p1c"]
|
|
2416
|
+
paths_2 = ["inputs.p1c"]
|
|
2417
|
+
assert path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(
|
|
2418
|
+
*paths_1
|
|
2419
|
+
) == path_to_PV_classes_workflow.tasks.t1._paths_to_PV_classes(*paths_2)
|
|
2420
|
+
|
|
2421
|
+
|
|
2422
|
+
def test_input_values_specified_by_dict(null_config):
|
|
2423
|
+
ts = hf.TaskSchema(objective="t1", inputs=[hf.SchemaInput("p1")])
|
|
2424
|
+
t1 = hf.Task(schema=ts, inputs=[hf.InputValue(parameter="p1", value=101)])
|
|
2425
|
+
t2 = hf.Task(schema=ts, inputs={"p1": 101})
|
|
2426
|
+
assert t1 == t2
|
|
2427
|
+
|
|
2428
|
+
|
|
2429
|
+
def test_labelled_input_values_specified_by_dict(null_config):
|
|
2430
|
+
ts = hf.TaskSchema(objective="t1", inputs=[hf.SchemaInput("p1", labels={"one": {}})])
|
|
2431
|
+
t1 = hf.Task(
|
|
2432
|
+
schema=ts, inputs=[hf.InputValue(parameter="p1", label="one", value=101)]
|
|
2433
|
+
)
|
|
2434
|
+
t2 = hf.Task(schema=ts, inputs={"p1[one]": 101})
|
|
2435
|
+
assert t1 == t2
|
|
2436
|
+
|
|
2437
|
+
|
|
2438
|
+
def test_raise_UnknownEnvironmentPresetError(null_config):
|
|
2439
|
+
ts = hf.TaskSchema(objective="t1")
|
|
2440
|
+
with pytest.raises(UnknownEnvironmentPresetError):
|
|
2441
|
+
hf.Task(schema=ts, env_preset="my_env_preset")
|
|
2442
|
+
|
|
2443
|
+
|
|
2444
|
+
def test_raise_UnknownEnvironmentPresetError_sequence(null_config):
|
|
2445
|
+
ts = hf.TaskSchema(objective="t1")
|
|
2446
|
+
seq = hf.ValueSequence(path="env_preset", values=["my_env_preset"])
|
|
2447
|
+
with pytest.raises(UnknownEnvironmentPresetError):
|
|
2448
|
+
hf.Task(schema=ts, sequences=[seq])
|
|
2449
|
+
|
|
2450
|
+
|
|
2451
|
+
def test_group_values_input_and_output_source_from_upstream(null_config, tmp_path: Path):
|
|
2452
|
+
"""
|
|
2453
|
+
| task | inputs | outputs | group | num_elements |
|
|
2454
|
+
| ---- | ------ | ------- | -------- | ---------------------------|
|
|
2455
|
+
| t1 | p0 | p1 | - | 3 |
|
|
2456
|
+
| t2 | p1 | p2 | my_group | 3 |
|
|
2457
|
+
| t3 | p1, p2 | - | - | 1 (grouped p1, grouped p2) |
|
|
2458
|
+
"""
|
|
2459
|
+
s1 = hf.TaskSchema(
|
|
2460
|
+
objective="t1",
|
|
2461
|
+
inputs=[hf.SchemaInput("p0")],
|
|
2462
|
+
outputs=[hf.SchemaOutput("p1")],
|
|
2463
|
+
actions=[
|
|
2464
|
+
hf.Action(
|
|
2465
|
+
commands=[
|
|
2466
|
+
hf.Command(
|
|
2467
|
+
command="echo <<parameter:p0>> + 1",
|
|
2468
|
+
stdout="<<parameter:p1>>",
|
|
2469
|
+
)
|
|
2470
|
+
]
|
|
2471
|
+
)
|
|
2472
|
+
],
|
|
2473
|
+
)
|
|
2474
|
+
s2 = hf.TaskSchema(
|
|
2475
|
+
objective="t2",
|
|
2476
|
+
inputs=[hf.SchemaInput("p1")],
|
|
2477
|
+
outputs=[hf.SchemaOutput("p2")],
|
|
2478
|
+
actions=[
|
|
2479
|
+
hf.Action(
|
|
2480
|
+
commands=[
|
|
2481
|
+
hf.Command(
|
|
2482
|
+
command="echo <<parameter:p1>> + 1",
|
|
2483
|
+
stdout="<<parameter:p2>>",
|
|
2484
|
+
)
|
|
2485
|
+
]
|
|
2486
|
+
)
|
|
2487
|
+
],
|
|
2488
|
+
)
|
|
2489
|
+
s3 = hf.TaskSchema(
|
|
2490
|
+
objective="t3",
|
|
2491
|
+
inputs=[
|
|
2492
|
+
hf.SchemaInput("p1", group="my_group"),
|
|
2493
|
+
hf.SchemaInput("p2", group="my_group"),
|
|
2494
|
+
],
|
|
2495
|
+
)
|
|
2496
|
+
t1 = hf.Task(
|
|
2497
|
+
schema=s1,
|
|
2498
|
+
inputs={"p0": 1},
|
|
2499
|
+
repeats=3,
|
|
2500
|
+
)
|
|
2501
|
+
t2 = hf.Task(schema=s2, groups=[hf.ElementGroup("my_group")])
|
|
2502
|
+
t3 = hf.Task(schema=s3, input_sources={"p1": [hf.InputSource.task(1, "input")]})
|
|
2503
|
+
wk = hf.Workflow.from_template_data(
|
|
2504
|
+
template_name="test_group",
|
|
2505
|
+
tasks=[t1, t2, t3],
|
|
2506
|
+
path=tmp_path,
|
|
2507
|
+
)
|
|
2508
|
+
assert wk.tasks[0].num_elements == 3
|
|
2509
|
+
assert wk.tasks[1].num_elements == 3
|
|
2510
|
+
assert wk.tasks[2].num_elements == 1
|
|
2511
|
+
assert [i.value for i in wk.tasks[2].inputs.p1] == [[None, None, None]]
|
|
2512
|
+
assert [i.value for i in wk.tasks[2].inputs.p2] == [[None, None, None]]
|
|
2513
|
+
|
|
2514
|
+
|
|
2515
|
+
def test_is_input_type_required_True(null_config):
|
|
2516
|
+
inp_file = hf.FileSpec(label="my_input_file", name="my_input_file.txt")
|
|
2517
|
+
s1 = hf.TaskSchema(
|
|
2518
|
+
objective="t1",
|
|
2519
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2520
|
+
actions=[
|
|
2521
|
+
hf.Action(
|
|
2522
|
+
commands=[hf.Command("cat <<file:my_input_file>>")],
|
|
2523
|
+
input_file_generators=[
|
|
2524
|
+
hf.InputFileGenerator(
|
|
2525
|
+
input_file=inp_file,
|
|
2526
|
+
inputs=[hf.Parameter("p1")],
|
|
2527
|
+
script="NOT-SET-FOR-THIS-TEST",
|
|
2528
|
+
),
|
|
2529
|
+
],
|
|
2530
|
+
environments=[hf.ActionEnvironment(environment="python_env")],
|
|
2531
|
+
)
|
|
2532
|
+
],
|
|
2533
|
+
)
|
|
2534
|
+
t1 = hf.Task(schema=s1, inputs={"p1": 100})
|
|
2535
|
+
assert t1.is_input_type_required(typ="p1", element_set=t1.element_sets[0])
|
|
2536
|
+
|
|
2537
|
+
|
|
2538
|
+
def test_is_input_type_required_False(null_config):
|
|
2539
|
+
inp_file = hf.FileSpec(label="my_input_file", name="my_input_file.txt")
|
|
2540
|
+
s1 = hf.TaskSchema(
|
|
2541
|
+
objective="t1",
|
|
2542
|
+
inputs=[hf.SchemaInput(parameter=hf.Parameter("p1"))],
|
|
2543
|
+
actions=[
|
|
2544
|
+
hf.Action(
|
|
2545
|
+
commands=[hf.Command("cat <<file:my_input_file>>")],
|
|
2546
|
+
input_file_generators=[
|
|
2547
|
+
hf.InputFileGenerator(
|
|
2548
|
+
input_file=inp_file,
|
|
2549
|
+
inputs=[hf.Parameter("p1")],
|
|
2550
|
+
script="NOT-SET-FOR-THIS-TEST",
|
|
2551
|
+
),
|
|
2552
|
+
],
|
|
2553
|
+
environments=[hf.ActionEnvironment(environment="python_env")],
|
|
2554
|
+
)
|
|
2555
|
+
],
|
|
2556
|
+
)
|
|
2557
|
+
t1 = hf.Task(
|
|
2558
|
+
schema=s1, input_files=[hf.InputFile(file=inp_file, path="NOT-SET-FOR-THIS-TEST")]
|
|
2559
|
+
)
|
|
2560
|
+
assert not t1.is_input_type_required(typ="p1", element_set=t1.element_sets[0])
|