hpcflow 0.1.15__py3-none-any.whl → 0.2.0a271__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (275) hide show
  1. hpcflow/__init__.py +2 -11
  2. hpcflow/__pyinstaller/__init__.py +5 -0
  3. hpcflow/__pyinstaller/hook-hpcflow.py +40 -0
  4. hpcflow/_version.py +1 -1
  5. hpcflow/app.py +43 -0
  6. hpcflow/cli.py +2 -461
  7. hpcflow/data/demo_data_manifest/__init__.py +3 -0
  8. hpcflow/data/demo_data_manifest/demo_data_manifest.json +6 -0
  9. hpcflow/data/jinja_templates/test/test_template.txt +8 -0
  10. hpcflow/data/programs/hello_world/README.md +1 -0
  11. hpcflow/data/programs/hello_world/hello_world.c +87 -0
  12. hpcflow/data/programs/hello_world/linux/hello_world +0 -0
  13. hpcflow/data/programs/hello_world/macos/hello_world +0 -0
  14. hpcflow/data/programs/hello_world/win/hello_world.exe +0 -0
  15. hpcflow/data/scripts/__init__.py +1 -0
  16. hpcflow/data/scripts/bad_script.py +2 -0
  17. hpcflow/data/scripts/demo_task_1_generate_t1_infile_1.py +8 -0
  18. hpcflow/data/scripts/demo_task_1_generate_t1_infile_2.py +8 -0
  19. hpcflow/data/scripts/demo_task_1_parse_p3.py +7 -0
  20. hpcflow/data/scripts/do_nothing.py +2 -0
  21. hpcflow/data/scripts/env_specifier_test/input_file_generator_pass_env_spec.py +4 -0
  22. hpcflow/data/scripts/env_specifier_test/main_script_test_pass_env_spec.py +8 -0
  23. hpcflow/data/scripts/env_specifier_test/output_file_parser_pass_env_spec.py +4 -0
  24. hpcflow/data/scripts/env_specifier_test/v1/input_file_generator_basic.py +4 -0
  25. hpcflow/data/scripts/env_specifier_test/v1/main_script_test_direct_in_direct_out.py +7 -0
  26. hpcflow/data/scripts/env_specifier_test/v1/output_file_parser_basic.py +4 -0
  27. hpcflow/data/scripts/env_specifier_test/v2/main_script_test_direct_in_direct_out.py +7 -0
  28. hpcflow/data/scripts/generate_t1_file_01.py +7 -0
  29. hpcflow/data/scripts/import_future_script.py +7 -0
  30. hpcflow/data/scripts/input_file_generator_basic.py +3 -0
  31. hpcflow/data/scripts/input_file_generator_basic_FAIL.py +3 -0
  32. hpcflow/data/scripts/input_file_generator_test_stdout_stderr.py +8 -0
  33. hpcflow/data/scripts/main_script_test_direct_in.py +3 -0
  34. hpcflow/data/scripts/main_script_test_direct_in_direct_out.py +6 -0
  35. hpcflow/data/scripts/main_script_test_direct_in_direct_out_2.py +6 -0
  36. hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed.py +6 -0
  37. hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed_group.py +7 -0
  38. hpcflow/data/scripts/main_script_test_direct_in_direct_out_3.py +6 -0
  39. hpcflow/data/scripts/main_script_test_direct_in_direct_out_all_iters_test.py +15 -0
  40. hpcflow/data/scripts/main_script_test_direct_in_direct_out_env_spec.py +7 -0
  41. hpcflow/data/scripts/main_script_test_direct_in_direct_out_labels.py +8 -0
  42. hpcflow/data/scripts/main_script_test_direct_in_group_direct_out_3.py +6 -0
  43. hpcflow/data/scripts/main_script_test_direct_in_group_one_fail_direct_out_3.py +6 -0
  44. hpcflow/data/scripts/main_script_test_direct_sub_param_in_direct_out.py +6 -0
  45. hpcflow/data/scripts/main_script_test_hdf5_in_obj.py +12 -0
  46. hpcflow/data/scripts/main_script_test_hdf5_in_obj_2.py +12 -0
  47. hpcflow/data/scripts/main_script_test_hdf5_in_obj_group.py +12 -0
  48. hpcflow/data/scripts/main_script_test_hdf5_out_obj.py +11 -0
  49. hpcflow/data/scripts/main_script_test_json_and_direct_in_json_out.py +14 -0
  50. hpcflow/data/scripts/main_script_test_json_in_json_and_direct_out.py +17 -0
  51. hpcflow/data/scripts/main_script_test_json_in_json_out.py +14 -0
  52. hpcflow/data/scripts/main_script_test_json_in_json_out_labels.py +16 -0
  53. hpcflow/data/scripts/main_script_test_json_in_obj.py +12 -0
  54. hpcflow/data/scripts/main_script_test_json_out_FAIL.py +3 -0
  55. hpcflow/data/scripts/main_script_test_json_out_obj.py +10 -0
  56. hpcflow/data/scripts/main_script_test_json_sub_param_in_json_out_labels.py +16 -0
  57. hpcflow/data/scripts/main_script_test_shell_env_vars.py +12 -0
  58. hpcflow/data/scripts/main_script_test_std_out_std_err.py +6 -0
  59. hpcflow/data/scripts/output_file_parser_basic.py +3 -0
  60. hpcflow/data/scripts/output_file_parser_basic_FAIL.py +7 -0
  61. hpcflow/data/scripts/output_file_parser_test_stdout_stderr.py +8 -0
  62. hpcflow/data/scripts/parse_t1_file_01.py +4 -0
  63. hpcflow/data/scripts/script_exit_test.py +5 -0
  64. hpcflow/data/template_components/__init__.py +1 -0
  65. hpcflow/data/template_components/command_files.yaml +26 -0
  66. hpcflow/data/template_components/environments.yaml +13 -0
  67. hpcflow/data/template_components/parameters.yaml +14 -0
  68. hpcflow/data/template_components/task_schemas.yaml +139 -0
  69. hpcflow/data/workflows/workflow_1.yaml +5 -0
  70. hpcflow/examples.ipynb +1037 -0
  71. hpcflow/sdk/__init__.py +149 -0
  72. hpcflow/sdk/app.py +4266 -0
  73. hpcflow/sdk/cli.py +1479 -0
  74. hpcflow/sdk/cli_common.py +385 -0
  75. hpcflow/sdk/config/__init__.py +5 -0
  76. hpcflow/sdk/config/callbacks.py +246 -0
  77. hpcflow/sdk/config/cli.py +388 -0
  78. hpcflow/sdk/config/config.py +1410 -0
  79. hpcflow/sdk/config/config_file.py +501 -0
  80. hpcflow/sdk/config/errors.py +272 -0
  81. hpcflow/sdk/config/types.py +150 -0
  82. hpcflow/sdk/core/__init__.py +38 -0
  83. hpcflow/sdk/core/actions.py +3857 -0
  84. hpcflow/sdk/core/app_aware.py +25 -0
  85. hpcflow/sdk/core/cache.py +224 -0
  86. hpcflow/sdk/core/command_files.py +814 -0
  87. hpcflow/sdk/core/commands.py +424 -0
  88. hpcflow/sdk/core/element.py +2071 -0
  89. hpcflow/sdk/core/enums.py +221 -0
  90. hpcflow/sdk/core/environment.py +256 -0
  91. hpcflow/sdk/core/errors.py +1043 -0
  92. hpcflow/sdk/core/execute.py +207 -0
  93. hpcflow/sdk/core/json_like.py +809 -0
  94. hpcflow/sdk/core/loop.py +1320 -0
  95. hpcflow/sdk/core/loop_cache.py +282 -0
  96. hpcflow/sdk/core/object_list.py +933 -0
  97. hpcflow/sdk/core/parameters.py +3371 -0
  98. hpcflow/sdk/core/rule.py +196 -0
  99. hpcflow/sdk/core/run_dir_files.py +57 -0
  100. hpcflow/sdk/core/skip_reason.py +7 -0
  101. hpcflow/sdk/core/task.py +3792 -0
  102. hpcflow/sdk/core/task_schema.py +993 -0
  103. hpcflow/sdk/core/test_utils.py +538 -0
  104. hpcflow/sdk/core/types.py +447 -0
  105. hpcflow/sdk/core/utils.py +1207 -0
  106. hpcflow/sdk/core/validation.py +87 -0
  107. hpcflow/sdk/core/values.py +477 -0
  108. hpcflow/sdk/core/workflow.py +4820 -0
  109. hpcflow/sdk/core/zarr_io.py +206 -0
  110. hpcflow/sdk/data/__init__.py +13 -0
  111. hpcflow/sdk/data/config_file_schema.yaml +34 -0
  112. hpcflow/sdk/data/config_schema.yaml +260 -0
  113. hpcflow/sdk/data/environments_spec_schema.yaml +21 -0
  114. hpcflow/sdk/data/files_spec_schema.yaml +5 -0
  115. hpcflow/sdk/data/parameters_spec_schema.yaml +7 -0
  116. hpcflow/sdk/data/task_schema_spec_schema.yaml +3 -0
  117. hpcflow/sdk/data/workflow_spec_schema.yaml +22 -0
  118. hpcflow/sdk/demo/__init__.py +3 -0
  119. hpcflow/sdk/demo/cli.py +242 -0
  120. hpcflow/sdk/helper/__init__.py +3 -0
  121. hpcflow/sdk/helper/cli.py +137 -0
  122. hpcflow/sdk/helper/helper.py +300 -0
  123. hpcflow/sdk/helper/watcher.py +192 -0
  124. hpcflow/sdk/log.py +288 -0
  125. hpcflow/sdk/persistence/__init__.py +18 -0
  126. hpcflow/sdk/persistence/base.py +2817 -0
  127. hpcflow/sdk/persistence/defaults.py +6 -0
  128. hpcflow/sdk/persistence/discovery.py +39 -0
  129. hpcflow/sdk/persistence/json.py +954 -0
  130. hpcflow/sdk/persistence/pending.py +948 -0
  131. hpcflow/sdk/persistence/store_resource.py +203 -0
  132. hpcflow/sdk/persistence/types.py +309 -0
  133. hpcflow/sdk/persistence/utils.py +73 -0
  134. hpcflow/sdk/persistence/zarr.py +2388 -0
  135. hpcflow/sdk/runtime.py +320 -0
  136. hpcflow/sdk/submission/__init__.py +3 -0
  137. hpcflow/sdk/submission/enums.py +70 -0
  138. hpcflow/sdk/submission/jobscript.py +2379 -0
  139. hpcflow/sdk/submission/schedulers/__init__.py +281 -0
  140. hpcflow/sdk/submission/schedulers/direct.py +233 -0
  141. hpcflow/sdk/submission/schedulers/sge.py +376 -0
  142. hpcflow/sdk/submission/schedulers/slurm.py +598 -0
  143. hpcflow/sdk/submission/schedulers/utils.py +25 -0
  144. hpcflow/sdk/submission/shells/__init__.py +52 -0
  145. hpcflow/sdk/submission/shells/base.py +229 -0
  146. hpcflow/sdk/submission/shells/bash.py +504 -0
  147. hpcflow/sdk/submission/shells/os_version.py +115 -0
  148. hpcflow/sdk/submission/shells/powershell.py +352 -0
  149. hpcflow/sdk/submission/submission.py +1402 -0
  150. hpcflow/sdk/submission/types.py +140 -0
  151. hpcflow/sdk/typing.py +194 -0
  152. hpcflow/sdk/utils/arrays.py +69 -0
  153. hpcflow/sdk/utils/deferred_file.py +55 -0
  154. hpcflow/sdk/utils/hashing.py +16 -0
  155. hpcflow/sdk/utils/patches.py +31 -0
  156. hpcflow/sdk/utils/strings.py +69 -0
  157. hpcflow/tests/api/test_api.py +32 -0
  158. hpcflow/tests/conftest.py +123 -0
  159. hpcflow/tests/data/__init__.py +0 -0
  160. hpcflow/tests/data/benchmark_N_elements.yaml +6 -0
  161. hpcflow/tests/data/benchmark_script_runner.yaml +26 -0
  162. hpcflow/tests/data/multi_path_sequences.yaml +29 -0
  163. hpcflow/tests/data/workflow_1.json +10 -0
  164. hpcflow/tests/data/workflow_1.yaml +5 -0
  165. hpcflow/tests/data/workflow_1_slurm.yaml +8 -0
  166. hpcflow/tests/data/workflow_1_wsl.yaml +8 -0
  167. hpcflow/tests/data/workflow_test_run_abort.yaml +42 -0
  168. hpcflow/tests/jinja_templates/test_jinja_templates.py +161 -0
  169. hpcflow/tests/programs/test_programs.py +180 -0
  170. hpcflow/tests/schedulers/direct_linux/test_direct_linux_submission.py +12 -0
  171. hpcflow/tests/schedulers/sge/test_sge_submission.py +36 -0
  172. hpcflow/tests/schedulers/slurm/test_slurm_submission.py +14 -0
  173. hpcflow/tests/scripts/test_input_file_generators.py +282 -0
  174. hpcflow/tests/scripts/test_main_scripts.py +1361 -0
  175. hpcflow/tests/scripts/test_non_snippet_script.py +46 -0
  176. hpcflow/tests/scripts/test_ouput_file_parsers.py +353 -0
  177. hpcflow/tests/shells/wsl/test_wsl_submission.py +14 -0
  178. hpcflow/tests/unit/test_action.py +1066 -0
  179. hpcflow/tests/unit/test_action_rule.py +24 -0
  180. hpcflow/tests/unit/test_app.py +132 -0
  181. hpcflow/tests/unit/test_cache.py +46 -0
  182. hpcflow/tests/unit/test_cli.py +172 -0
  183. hpcflow/tests/unit/test_command.py +377 -0
  184. hpcflow/tests/unit/test_config.py +195 -0
  185. hpcflow/tests/unit/test_config_file.py +162 -0
  186. hpcflow/tests/unit/test_element.py +666 -0
  187. hpcflow/tests/unit/test_element_iteration.py +88 -0
  188. hpcflow/tests/unit/test_element_set.py +158 -0
  189. hpcflow/tests/unit/test_group.py +115 -0
  190. hpcflow/tests/unit/test_input_source.py +1479 -0
  191. hpcflow/tests/unit/test_input_value.py +398 -0
  192. hpcflow/tests/unit/test_jobscript_unit.py +757 -0
  193. hpcflow/tests/unit/test_json_like.py +1247 -0
  194. hpcflow/tests/unit/test_loop.py +2674 -0
  195. hpcflow/tests/unit/test_meta_task.py +325 -0
  196. hpcflow/tests/unit/test_multi_path_sequences.py +259 -0
  197. hpcflow/tests/unit/test_object_list.py +116 -0
  198. hpcflow/tests/unit/test_parameter.py +243 -0
  199. hpcflow/tests/unit/test_persistence.py +664 -0
  200. hpcflow/tests/unit/test_resources.py +243 -0
  201. hpcflow/tests/unit/test_run.py +286 -0
  202. hpcflow/tests/unit/test_run_directories.py +29 -0
  203. hpcflow/tests/unit/test_runtime.py +9 -0
  204. hpcflow/tests/unit/test_schema_input.py +372 -0
  205. hpcflow/tests/unit/test_shell.py +129 -0
  206. hpcflow/tests/unit/test_slurm.py +39 -0
  207. hpcflow/tests/unit/test_submission.py +502 -0
  208. hpcflow/tests/unit/test_task.py +2560 -0
  209. hpcflow/tests/unit/test_task_schema.py +182 -0
  210. hpcflow/tests/unit/test_utils.py +616 -0
  211. hpcflow/tests/unit/test_value_sequence.py +549 -0
  212. hpcflow/tests/unit/test_values.py +91 -0
  213. hpcflow/tests/unit/test_workflow.py +827 -0
  214. hpcflow/tests/unit/test_workflow_template.py +186 -0
  215. hpcflow/tests/unit/utils/test_arrays.py +40 -0
  216. hpcflow/tests/unit/utils/test_deferred_file_writer.py +34 -0
  217. hpcflow/tests/unit/utils/test_hashing.py +65 -0
  218. hpcflow/tests/unit/utils/test_patches.py +5 -0
  219. hpcflow/tests/unit/utils/test_redirect_std.py +50 -0
  220. hpcflow/tests/unit/utils/test_strings.py +97 -0
  221. hpcflow/tests/workflows/__init__.py +0 -0
  222. hpcflow/tests/workflows/test_directory_structure.py +31 -0
  223. hpcflow/tests/workflows/test_jobscript.py +355 -0
  224. hpcflow/tests/workflows/test_run_status.py +198 -0
  225. hpcflow/tests/workflows/test_skip_downstream.py +696 -0
  226. hpcflow/tests/workflows/test_submission.py +140 -0
  227. hpcflow/tests/workflows/test_workflows.py +564 -0
  228. hpcflow/tests/workflows/test_zip.py +18 -0
  229. hpcflow/viz_demo.ipynb +6794 -0
  230. hpcflow-0.2.0a271.dist-info/LICENSE +375 -0
  231. hpcflow-0.2.0a271.dist-info/METADATA +65 -0
  232. hpcflow-0.2.0a271.dist-info/RECORD +237 -0
  233. {hpcflow-0.1.15.dist-info → hpcflow-0.2.0a271.dist-info}/WHEEL +4 -5
  234. hpcflow-0.2.0a271.dist-info/entry_points.txt +6 -0
  235. hpcflow/api.py +0 -490
  236. hpcflow/archive/archive.py +0 -307
  237. hpcflow/archive/cloud/cloud.py +0 -45
  238. hpcflow/archive/cloud/errors.py +0 -9
  239. hpcflow/archive/cloud/providers/dropbox.py +0 -427
  240. hpcflow/archive/errors.py +0 -5
  241. hpcflow/base_db.py +0 -4
  242. hpcflow/config.py +0 -233
  243. hpcflow/copytree.py +0 -66
  244. hpcflow/data/examples/_config.yml +0 -14
  245. hpcflow/data/examples/damask/demo/1.run.yml +0 -4
  246. hpcflow/data/examples/damask/demo/2.process.yml +0 -29
  247. hpcflow/data/examples/damask/demo/geom.geom +0 -2052
  248. hpcflow/data/examples/damask/demo/load.load +0 -1
  249. hpcflow/data/examples/damask/demo/material.config +0 -185
  250. hpcflow/data/examples/damask/inputs/geom.geom +0 -2052
  251. hpcflow/data/examples/damask/inputs/load.load +0 -1
  252. hpcflow/data/examples/damask/inputs/material.config +0 -185
  253. hpcflow/data/examples/damask/profiles/_variable_lookup.yml +0 -21
  254. hpcflow/data/examples/damask/profiles/damask.yml +0 -4
  255. hpcflow/data/examples/damask/profiles/damask_process.yml +0 -8
  256. hpcflow/data/examples/damask/profiles/damask_run.yml +0 -5
  257. hpcflow/data/examples/damask/profiles/default.yml +0 -6
  258. hpcflow/data/examples/thinking.yml +0 -177
  259. hpcflow/errors.py +0 -2
  260. hpcflow/init_db.py +0 -37
  261. hpcflow/models.py +0 -2595
  262. hpcflow/nesting.py +0 -9
  263. hpcflow/profiles.py +0 -455
  264. hpcflow/project.py +0 -81
  265. hpcflow/scheduler.py +0 -322
  266. hpcflow/utils.py +0 -103
  267. hpcflow/validation.py +0 -166
  268. hpcflow/variables.py +0 -543
  269. hpcflow-0.1.15.dist-info/METADATA +0 -168
  270. hpcflow-0.1.15.dist-info/RECORD +0 -45
  271. hpcflow-0.1.15.dist-info/entry_points.txt +0 -8
  272. hpcflow-0.1.15.dist-info/top_level.txt +0 -1
  273. /hpcflow/{archive → data/jinja_templates}/__init__.py +0 -0
  274. /hpcflow/{archive/cloud → data/programs}/__init__.py +0 -0
  275. /hpcflow/{archive/cloud/providers → data/workflows}/__init__.py +0 -0

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