gammasimtools 0.6.1__py3-none-any.whl → 0.8.2__py3-none-any.whl

gammasimtools-0.6.1.dist-info/METADATA

@@ -1,180 +0,0 @@
-Metadata-Version: 2.1
-Name: gammasimtools
-Version: 0.6.1
-Summary: Tools for the Simulation System of the CTA Observatory
-Author-email: simtools developers <simtools-developer@desy.de>
-License: BSD 3-Clause License
-        
-        Copyright (c) 2020, gammasim-tools, simtools developers
-        All rights reserved.
-        
-        Redistribution and use in source and binary forms, with or without
-        modification, are permitted provided that the following conditions are met:
-        
-        1. Redistributions of source code must retain the above copyright notice, this
-           list of conditions and the following disclaimer.
-        
-        2. Redistributions in binary form must reproduce the above copyright notice,
-           this list of conditions and the following disclaimer in the documentation
-           and/or other materials provided with the distribution.
-        
-        3. Neither the name of the copyright holder nor the names of its
-           contributors may be used to endorse or promote products derived from
-           this software without specific prior written permission.
-        
-        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-        DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-        FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-        DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-        SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-        CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-        OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-        OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-        
-Project-URL: bug tracker, https://github.com/gammasim/simtools/issues
-Project-URL: documentation, https://gammasim.github.io/simtools/
-Project-URL: repository, https://github.com/gammasim/simtools
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: BSD License
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Topic :: Scientific/Engineering :: Astronomy
-Requires-Python: >=3.9
-Description-Content-Type: text/x-rst
-License-File: LICENSE
-Requires-Dist: astropy
-Requires-Dist: boost-histogram
-Requires-Dist: ctapipe
-Requires-Dist: eventio
-Requires-Dist: jsonschema
-Requires-Dist: matplotlib
-Requires-Dist: numpy
-Requires-Dist: pymongo
-Requires-Dist: pyproj
-Requires-Dist: python-dotenv
-Requires-Dist: pyyaml
-Requires-Dist: scipy
-Requires-Dist: toml
-Provides-Extra: dev
-Requires-Dist: flake8 ; extra == 'dev'
-Requires-Dist: pre-commit ; extra == 'dev'
-Requires-Dist: pylint ; extra == 'dev'
-Provides-Extra: doc
-Requires-Dist: numpydoc ; extra == 'doc'
-Requires-Dist: sphinx ; extra == 'doc'
-Requires-Dist: sphinx-rtd-theme ; extra == 'doc'
-Provides-Extra: tests
-Requires-Dist: pytest ; extra == 'tests'
-Requires-Dist: pytest-cov ; extra == 'tests'
-Requires-Dist: pytest-random-order ; extra == 'tests'
-Requires-Dist: pytest-xdist ; extra == 'tests'
-
-==============
-simtools
-==============
-
-.. image:: https://img.shields.io/badge/License-BSD_3--Clause-blue.svg
-   :target: https://github.com/gammasim/simtools/blob/main/LICENSE
-
-.. image:: https://img.shields.io/github/v/release/gammasim/simtools
-   :target: https://github.com/gammasim/simtools/releases
-
-.. image:: https://zenodo.org/badge/195011575.svg
-   :target: https://zenodo.org/badge/latestdoi/195011575
-
-.. image:: https://badge.fury.io/py/gammasimtools.svg
-    :target: https://badge.fury.io/py/gammasimtools
-
-.. image:: https://github.com/gammasim/simtools/actions/workflows/CI-unittests.yml/badge.svg
-   :target: https://github.com/gammasim/simtools/actions/workflows/CI-unittests.yml
-
-.. image:: https://github.com/gammasim/simtools/actions/workflows/CI-integrationtests.yml/badge.svg
-   :target: https://github.com/gammasim/simtools/actions/workflows/CI-integrationtests.yml
-
-.. image:: https://github.com/gammasim/simtools/actions/workflows/CI-docs.yml/badge.svg
-   :target: https://github.com/gammasim/simtools/actions/workflows/CI-docs.yml
-
-.. image:: https://app.codacy.com/project/badge/Grade/a3f19df7454844059341edd0769e02a7
-   :target: https://app.codacy.com/gh/gammasim/simtools/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade
-
-.. image:: https://codecov.io/gh/gammasim/simtools/graph/badge.svg?token=AYAIRPARCH
-   :target: https://codecov.io/gh/gammasim/simtools
-
-Simulation tools and applications for the `Cherenkov Telescope Array (CTAO) <https://www.cta-observatory.org>`_.
-
-License: `BSD-3 <https://github.com/gammasim/simtools/blob/main/LICENSE>`_
-
-Useful links:
-`Documentation <https://gammasim.github.io/simtools/>`_
-`Source code <https://github.com/gammasim/simtools>`_
-`Issue tracker <https://github.com/gammasim/simtools/issues>`_
-`Citation <https://github.com/gammasim/simtools/blob/main/CITATION.cff>`_
-
-simtools provides:
-
-* libraries for simulation model management and model database interface
-* tools for the preparation and configuration of simulation productions
-* applications for simulation model parameter derivation and validation
-* standardized interfaces and data products independent of the underlying simulation software (e.g., `CORSIKA <https://www.iap.kit.edu/corsika/>`_, `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_)
-* I/O and reporting tools for the MC simulation model parameter and production database
-
-simtools is one part of the CTAO Simulation Pipeline, which consist of the following components:
-
-- `CORSIKA <https://www.iap.kit.edu/corsika/>`_ air shower simulation code and the `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_ telescope simulation code
-- `workflows <https://github.com/gammasim/workflows>`_ for setting, derivation and validation of simulation model parameters
-- `simulation model parameter and input data schema <https://github.com/gammasim/workflows/tree/main/schemas>`_
-- `databases <https://gammasim.github.io/simtools/databases.html>`_, especially the model parameter database
-
-simtools is under rapid development with continuous changes and additions planned.
-Please contact the developers before using it: simtools-developer@desy.de
-
-
-Quickstart
-==========
-
-.. warning::
-
-    The pip-installation of simtools provides limited functionality only
-    and is not as well tested as the conda/mamba installation.
-
-Install simtools with pypi (recommended for users):
-
-.. code-block:: bash
-
-    pip install gammasimtools
-
-Install simtools with mamba (recommended for developers):
-
-.. code-block:: bash
-
-    git clone https://github.com/gammasim/simtools.git
-    cd simtools
-    mamba env create -f environment.yml
-    conda activate simtools
-    pip install -e .
-
-For more detail see the `Getting_Started <https://gammasim.github.io/simtools/getting_started.html>`_ section of the manual.
-
-Authors
-=======
-
-* Raul R Prado (DESY)
-* Orel Gueta (DESY)
-* Tobias Kleiner (DESY)
-* Victor B. Martins (DESY)
-* Gernot Maier (DESY)
-
-Citing this Software
-====================
-
-Please cite this software if it use used for a publication, see the `Zenodo record <https://doi.org/10.5281/zenodo.6346696>`_ and `CITATION.cff <https://github.com/gammasim/simtools/blob/main/CITATION.cff>`_ .
-
-Acknowledgements
-================
-
-This project is supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - project number 460248186 (PUNCH4NFDI).

gammasimtools-0.6.1.dist-info/RECORD

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gammasimtools-0.6.1.dist-info/entry_points.txt

@@ -1,23 +0,0 @@
-[console_scripts]
-simtools-add-file-to-db = simtools.applications.add_file_to_db:main
-simtools-compare-cumulative-psf = simtools.applications.compare_cumulative_psf:main
-simtools-derive-mirror-rnda = simtools.applications.derive_mirror_rnda:main
-simtools-generate-corsika-histograms = simtools.applications.generate_corsika_histograms:main
-simtools-generate-default-metadata = simtools.applications.generate_default_metadata:main
-simtools-generate-simtel-array-histograms = simtools.applications.generate_simtel_array_histograms:main
-simtools-get-file-from-db = simtools.applications.get_file_from_db:main
-simtools-get-parameter = simtools.applications.get_parameter:main
-simtools-make-regular-arrays = simtools.applications.make_regular_arrays:main
-simtools-plot-array-layout = simtools.applications.plot_array_layout:main
-simtools-plot-simtel-histograms = simtools.applications.plot_simtel_histograms:main
-simtools-print-array-elements = simtools.applications.print_array_elements:main
-simtools-produce-array-config = simtools.applications.produce_array_config:main
-simtools-production = simtools.applications.production:main
-simtools-sim-showers-for-trigger-rates = simtools.applications.sim_showers_for_trigger_rates:main
-simtools-simulate-prod = simtools.applications.simulate_prod:main
-simtools-submit-data-from-external = simtools.applications.submit_data_from_external:main
-simtools-tune-psf = simtools.applications.tune_psf:main
-simtools-validate-camera-efficiency = simtools.applications.validate_camera_efficiency:main
-simtools-validate-camera-fov = simtools.applications.validate_camera_fov:main
-simtools-validate-file-using-schema = simtools.applications.validate_file_using_schema:main
-simtools-validate-optics = simtools.applications.validate_optics:main

simtools/_dev_version/scm_version.py

@@ -1,10 +0,0 @@
-# Try to use setuptools_scm to get the current version; this is only used
-# in development installations from the git repository.
-import os.path as pth
-
-try:
-    from setuptools_scm import get_version
-
-    version = get_version(root=pth.join("..", ".."), relative_to=__file__)
-except Exception as exc:
-    raise ImportError("setuptools_scm broken or not installed") from exc

simtools/applications/db_development_tools/add_new_parameter_to_db.py

@@ -1,81 +0,0 @@
-#!/usr/bin/python3
-
-"""
-    Summary
-    -------
-    This application is used to add a new parameter to the sites collection in the DB.
-
-    This application should not be used by anyone but expert users and not often.
-    Therefore, no additional documentation about this applications will be given.
-
-"""
-
-import logging
-
-import astropy.units as u
-
-import simtools.utils.general as gen
-from simtools import db_handler
-from simtools.configuration import configurator
-from simtools.utils import names
-
-
-def main():
-    config = configurator.Configurator(
-        description=("Add a new parameter to the sites collection in the DB.")
-    )
-    args_dict, db_config = config.initialize(db_config=True, telescope_model=True)
-
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(args_dict["log_level"]))
-
-    db = db_handler.DatabaseHandler(mongo_db_config=db_config)
-
-    # epsgs = [32628, 32719]
-    parameter = {
-        "mirror_panel_shape": 1,
-        "mirror_panel_diameter": 84.6 * u.cm,
-    }
-
-    telescopes = [
-        "South-SST-Structure-D",
-    ]
-
-    for telescope_now in telescopes:
-        for par_now, par_value in parameter.items():
-            all_versions = db.get_all_versions(
-                db_name=db.DB_CTA_SIMULATION_MODEL,
-                telescope_model_name="-".join(telescope_now.split("-")[1:]),
-                site=names.get_site_from_telescope_name(telescope_now),
-                parameter="camera_config_file",  # Just a random parameter to get the versions
-                collection_name="telescopes",
-            )
-            for version_now in all_versions:
-                db.add_new_parameter(
-                    db_name=db.DB_CTA_SIMULATION_MODEL,
-                    telescope=telescope_now,
-                    parameter=par_now,
-                    version=version_now,
-                    value=par_value,
-                    collection_name="telescopes",
-                    Applicable=True,
-                    File=False,
-                    file_prefix="./",
-                )
-                pars = db.read_mongo_db(
-                    db_name=db.DB_CTA_SIMULATION_MODEL,
-                    telescope_model_name_db=telescope_now,
-                    model_version=version_now,
-                    run_location="./",
-                    collection_name="telescopes",
-                    write_files=False,
-                )
-                if isinstance(par_value, u.Quantity):
-                    assert pars[par_now]["Value"] == par_value.value
-                    assert pars[par_now]["units"] == par_value.unit.to_string()
-                else:
-                    assert pars[par_now]["Value"] == par_value
-
-
-if __name__ == "__main__":
-    main()

simtools/applications/db_development_tools/add_unit_to_parameter_in_db.py

@@ -1,59 +0,0 @@
-#!/usr/bin/python3
-
-"""
-    Summary
-    -------
-    This application is used to add a unit to parameters in the DB.
-
-    This application should not be used by anyone but expert users and only in unusual cases.
-    Therefore, no additional documentation about this applications will be given.
-
-"""
-
-import logging
-
-import simtools.utils.general as gen
-from simtools import db_handler
-from simtools.configuration import configurator
-
-
-def main():
-    config = configurator.Configurator(description="Add a unit field to a parameter in the DB.")
-    args_dict, db_config = config.initialize(db_config=True, telescope_model=True)
-
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(args_dict["log_level"]))
-
-    db = db_handler.DatabaseHandler(mongo_db_config=db_config)
-
-    # pars_to_update = ["altitude"]
-    pars_to_update = ["ref_long", "ref_lat"]
-
-    # units = ["m"]
-    units = ["deg", "deg"]
-
-    for site in ["North", "South"]:
-        for par_now, unit_now in zip(pars_to_update, units):
-            all_versions = db.get_all_versions(
-                db_name=db.DB_CTA_SIMULATION_MODEL,
-                site=site,
-                parameter=par_now,
-                collection_name="sites",
-            )
-            for version_now in all_versions:
-                db.update_parameter_field(
-                    db_name=db.DB_CTA_SIMULATION_MODEL,
-                    site=site,
-                    version=version_now,
-                    parameter=par_now,
-                    field="units",
-                    new_value=unit_now,
-                    collection_name="sites",
-                )
-
-                site_pars = db.get_site_parameters(site, version_now)
-                assert site_pars[par_now]["units"] == unit_now
-
-
-if __name__ == "__main__":
-    main()

simtools/applications/db_development_tools/mark_non_optics_parameters_non_applicable.py

@@ -1,102 +0,0 @@
-#!/usr/bin/python3
-
-"""
-    Summary
-    -------
-    This application is used to modify all non-optics parameters \
-    in the MST-Structure entries in the DB to non-applicable.
-
-    This application should not be used anymore by anyone.
-
-    Therefore, no additional documentation about this applications will be given.
-
-"""
-
-import logging
-
-import yaml
-
-import simtools.utils.general as gen
-from simtools import db_handler
-from simtools.configuration import configurator
-
-
-def main():
-    config = configurator.Configurator(
-        description=(
-            "Mark all non-structure related parameters in the MST-Structure "
-            "DB entries as non-applicable. "
-            "The definition of what is non-structure related is given in the "
-            "input yaml file which should look like sections.yml "
-            "(see reports repo)."
-        )
-    )
-    config.parser.add_argument(
-        "--sections",
-        help="Provide a sections.yml file (see reports repo).",
-        type=str,
-        required=True,
-    )
-    args_dict, db_config = config.initialize(db_config=True, telescope_model=True)
-
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(args_dict["log_level"]))
-
-    db = db_handler.DatabaseHandler(mongo_db_config=db_config)
-
-    with open(args_dict["sections"], "r", encoding="utf-8") as stream:
-        parameter_catogeries = yaml.safe_load(stream)
-
-    non_optic_catagories = [
-        "Readout electronics",
-        "Trigger",
-        "Photon conversion",
-        "Camera",
-        "Unnecessary",
-    ]
-    non_optic_parameters = []
-    for category in non_optic_catagories:
-        for par_now in parameter_catogeries[category]:
-            non_optic_parameters.append(par_now)
-
-    versions = [
-        "default",
-        "2016-12-20",
-        "prod3_compatible",
-        "post_prod3_updates",
-        "2018-11-07",
-        "2019-02-22",
-        "2019-05-13",
-        "2019-11-20",
-        "2019-12-30",
-        "2020-02-26",
-        "2020-06-28",
-        "prod4",
-    ]
-
-    for version_now in versions:
-        for site in ["North", "South"]:
-            for par_now in non_optic_parameters:
-                db.update_parameter_field(
-                    db_name=db.DB_CTA_SIMULATION_MODEL,
-                    telescope=f"{site}-MST-Structure-D",
-                    version=version_now,
-                    parameter=par_now,
-                    field="Applicable",
-                    new_value=False,
-                )
-            pars = db.read_mongo_db(
-                db_name=db.DB_CTA_SIMULATION_MODEL,
-                telescope_model_name_db=f"{site}-MST-Structure-D",
-                model_version=version_now,
-                run_location="",
-                write_files=False,
-                only_applicable=False,
-            )
-            for par_now in non_optic_parameters:
-                if par_now in pars:
-                    assert pars[par_now]["Applicable"] is False
-
-
-if __name__ == "__main__":
-    main()

simtools/applications/get_parameter.py

@@ -1,92 +0,0 @@
-#!/usr/bin/python3
-
-"""
-    Summary
-    -------
-    Get a parameter entry from DB for a specific telescope or a site.
-    The application receives a parameter name, a site, a telescope (if applicable) and \
-    optionally a version. It then prints out the parameter entry.
-    If no version is provided, the value of the released model is printed..
-
-    Command line arguments
-    ----------------------
-    parameter (str, required)
-        Parameter name
-
-    site (str, required)
-        South or North.
-
-    telescope (str, optional)
-        Telescope model name (e.g. LST-1, SST-D, ...)
-
-    log_level (str, optional)
-        Log level to print.
-
-    Raises
-    ------
-    KeyError in case the parameter requested does not exist in the model parameters.
-
-    Example
-    -------
-    Get the mirror_list parameter from the DB.
-
-    .. code-block:: console
-
-        simtools-get-parameter --parameter mirror_list --site North --telescope LST-1\
-         --model_version prod5
-
-    Expected final print-out message:
-
-    .. code-block:: console
-
-        {'Applicable': True,
-         'File': True,
-         'Type': 'str',
-         'Value': 'mirror_CTA-N-LST1_v2019-03-31.dat',
-         'Version': '2020-06-28',
-         '_id': ObjectId('608834f257df2db2531b8e78'),
-         'entry_date': datetime.datetime(2021, 4, 27, 15, 59, 46, tzinfo=<bson.tz_util.FixedOffset \
-          object at 0x7f601dd51d80>)}
-
-"""
-
-import logging
-from pprint import pprint
-
-import simtools.utils.general as gen
-from simtools import db_handler
-from simtools.configuration import configurator
-
-
-def main():
-    config = configurator.Configurator(
-        description=(
-            "Get a parameter entry from DB for a specific telescope or a site. "
-            "The application receives a parameter name a site, a telescope (if applicable), "
-            " and optionally a version. It then prints out the parameter entry. "
-            "If no version is provided, the value of the released model is printed. "
-        )
-    )
-    config.parser.add_argument("--parameter", help="Parameter name", type=str, required=True)
-    args_dict, db_config = config.initialize(db_config=True, telescope_model=True)
-
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(args_dict["log_level"]))
-
-    db = db_handler.DatabaseHandler(mongo_db_config=db_config)
-
-    if args_dict["telescope"] is not None:
-        pars = db.get_model_parameters(
-            args_dict["site"], args_dict["telescope"], args_dict["model_version"]
-        )
-    else:
-        pars = db.get_site_parameters(args_dict["site"], args_dict["model_version"])
-    if args_dict["parameter"] not in pars:
-        raise KeyError(f"The requested parameter, {args_dict['parameter']}, does not exist.")
-    print()
-    pprint(pars[args_dict["parameter"]])
-    print()
-
-
-if __name__ == "__main__":
-    main()