gammasimtools 0.19.0__py3-none-any.whl → 0.21.0__py3-none-any.whl

simtools/simtel/simtel_io_histograms.py

@@ -1,556 +0,0 @@
-"""Reads the content of multiples files from sim_telarray."""
-
-import copy
-import logging
-
-import numpy as np
-from ctapipe.io import write_table
-from eventio import EventIOFile, Histograms
-from eventio.search_utils import yield_toplevel_of_type
-
-from simtools import version
-from simtools.io.hdf5_handler import fill_hdf5_table
-from simtools.simtel.simtel_io_histogram import (
-    HistogramIdNotFoundError,
-    InconsistentHistogramFormatError,
-    SimtelIOHistogram,
-)
-from simtools.utils.names import sanitize_name
-
-__all__ = [
-    "SimtelIOHistograms",
-]
-
-
-class SimtelIOHistograms:
-    """
-    Read the content of either multiple histogram (.hdata, or .hdata.zst) or sim_telarray files.
-
-    Allow both the .hdata.zst histogram and the .simtel.zst output file type.
-    It uses the SimtelIOHistogram class to deal with individual files.
-    Histogram files are ultimately handled by using eventio library.
-
-    Parameters
-    ----------
-    histogram_files: list
-        List of sim_telarray histogram files (str of Path).
-    test: bool
-        If True, only a fraction of the histograms will be processed, leading to a much shorter\
-         runtime.
-    area_from_distribution: bool
-        If true, the area thrown (the area in which the simulated events are distributed)
-        in the trigger rate calculation is estimated based on the event distribution.
-        The expected shape of the distribution of events as function of the core distance is
-        triangular up to the maximum distance. The weighted mean radius of the triangular
-        distribution is 2/3 times the upper edge. Therefore, when using the
-        ``area_from_distribution`` flag, the mean distance times 3/2, returns just the position of
-        the upper edge in the triangle distribution with little impact of the binning and little
-        dependence on the scatter area defined in the simulation. This is special useful when
-        calculating trigger rate for individual telescopes.
-        If false, the area thrown is estimated based on the maximum distance as given in
-        the simulation configuration.
-    energy_range: list
-        The energy range used in the simulation. It must be passed as a list of floats and the
-        energy must be in TeV (as in the CORSIKA configuration).
-        This argument is only needed and used if histogram_file is a .hdata file, in which case the
-        energy range cannot be retrieved directly from the file.
-    view_cone: list
-        The view cone used in the simulation. It must be passed as a list of floats and the
-        view cone must be in deg (as in the CORSIKA configuration).
-        This argument is only needed and used if histogram_file is a .hdata file, in which case the
-        view cone cannot be retrieved directly from the file.
-    """
-
-    def __init__(
-        self,
-        histogram_files,
-        test=False,
-        area_from_distribution=False,
-        energy_range=None,
-        view_cone=None,
-    ):
-        """Initialize SimtelIOHistograms."""
-        self._logger = logging.getLogger(__name__)
-        if not isinstance(histogram_files, list):
-            histogram_files = [histogram_files]
-        self.histogram_files = histogram_files
-        self.view_cone = view_cone
-        self.energy_range = energy_range
-        self._is_test = test
-        self._combined_hists = None
-        self._list_of_histograms = None
-        self.__meta_dict = None
-        self.area_from_distribution = area_from_distribution
-
-    def calculate_trigger_rates(self, print_info=False, stack_files=False):
-        """
-        Calculate the triggered and simulated event rate considering the histograms in each file.
-
-        It returns also a list with the tables where the energy dependent trigger rate for each
-        file can be found.
-
-        Parameters
-        ----------
-        print_info: bool
-            if True, prints out the information about the histograms such as energy range, area,
-            etc.
-        stack_files: bool
-            if True, stack the histograms from the different files into single histograms.
-            Useful to increase event statistics when calculating the trigger rate.
-
-        Returns
-        -------
-        sim_event_rates: list of astropy.Quantity[1/time]
-            The simulated event rates.
-        triggered_event_rates: list of astropy.Quantity[1/time]
-            The triggered event rates.
-        triggered_event_rate_uncertainties: list of astropy.Quantity[1/time]
-            The uncertainties in the triggered event rates.
-        trigger_rate_in_tables: list of astropy.QTable
-            The energy dependent trigger rates.
-            Only filled if stack_files is False.
-        """
-        if stack_files:
-            (
-                sim_event_rates,
-                triggered_event_rates,
-                triggered_event_rate_uncertainties,
-            ) = self._rates_for_stacked_files()
-            trigger_rate_in_tables = []
-        else:
-            (
-                sim_event_rates,
-                triggered_event_rates,
-                triggered_event_rate_uncertainties,
-                trigger_rate_in_tables,
-            ) = self._rates_for_each_file(print_info)
-
-        return (
-            sim_event_rates,
-            triggered_event_rates,
-            triggered_event_rate_uncertainties,
-            trigger_rate_in_tables,
-        )
-
-    def _fill_stacked_events(self):
-        """
-        Retrieve the simulated and triggered event histograms from the stacked histograms instead.
-
-        Returns
-        -------
-        first_hist_file: dict
-            The simulated 2D event histogram.
-        second_hist_file: dict
-            The triggered 2D event histogram.
-
-        Raises
-        ------
-        HistogramIdNotFoundError:
-            if histogram ids not found. Problem with the file.
-        """
-        sim_hist = None
-        trig_hist = None
-        for _, one_hist in enumerate(self.combined_hists):
-            if one_hist["id"] == 1:
-                sim_hist = one_hist
-            elif one_hist["id"] == 2:
-                trig_hist = one_hist
-
-        if sim_hist is None or trig_hist is None:
-            msg = (
-                "Simulated and triggered histograms were not found in the stacked histograms."
-                " Please check sim_telarray files!"
-            )
-            self._logger.error(msg)
-            raise HistogramIdNotFoundError
-
-        return sim_hist, trig_hist
-
-    def get_stacked_num_events(self):
-        """
-        Return stacked number of simulated events and triggered events.
-
-        Returns
-        -------
-        int:
-            total number of simulated events for the stacked dataset.
-        int:
-            total number of triggered events for the stacked dataset.
-        """
-        stacked_num_simulated_events = 0
-        stacked_num_triggered_events = 0
-        for _, file in enumerate(self.histogram_files):
-            simtel_hist_instance = SimtelIOHistogram(
-                file,
-                area_from_distribution=self.area_from_distribution,
-                energy_range=self.energy_range,
-                view_cone=self.view_cone,
-            )
-            _simulated, _triggered = simtel_hist_instance.total_number_of_events
-            stacked_num_simulated_events += _simulated
-            stacked_num_triggered_events += _triggered
-        return stacked_num_simulated_events, stacked_num_triggered_events
-
-    def _rates_for_stacked_files(self):
-        """
-        Calculate trigger rate for the stacked case.
-
-        Returns
-        -------
-        sim_event_rates: list of astropy.Quantity[1/time]
-            The simulated event rates.
-        triggered_event_rates: list of astropy.Quantity[1/time]
-            The triggered event rates.
-        triggered_event_rate_uncertainties: list of astropy.Quantity[1/time]
-            The uncertainties in the triggered event rates.
-        trigger_rate_in_tables: list of astropy.QTable
-            The energy dependent trigger rates.
-            Only filled if stack_files is False.
-        """
-        logging.info("Estimates for the stacked histograms:")
-        sim_hist, trig_hist = self._fill_stacked_events()
-        # Using a dummy instance of SimtelIOHistogram to calculate the trigger rate for the
-        # stacked files
-        simtel_hist_instance = SimtelIOHistogram(
-            self.histogram_files[0],
-            area_from_distribution=self.area_from_distribution,
-            energy_range=self.energy_range,
-            view_cone=self.view_cone,
-        )
-
-        stacked_num_simulated_events, stacked_num_triggered_events = self.get_stacked_num_events()
-        logging.info(f"Total number of simulated events: {stacked_num_simulated_events} events")
-        logging.info(f"Total number of triggered events: {stacked_num_triggered_events} events")
-        obs_time = simtel_hist_instance.estimate_observation_time(stacked_num_simulated_events)
-        logging.info(
-            "Estimated equivalent observation time corresponding to the number of"
-            f"events simulated: {obs_time.value} s"
-        )
-        sim_event_rate = stacked_num_simulated_events / obs_time
-        logging.info(f"Simulated event rate: {sim_event_rate.value:.4e} Hz")
-        (
-            triggered_event_rate,
-            _,
-        ) = simtel_hist_instance.compute_system_trigger_rate(
-            events_histogram=sim_hist, triggered_events_histogram=trig_hist
-        )
-        triggered_event_rate_uncertainty = simtel_hist_instance.estimate_trigger_rate_uncertainty(
-            triggered_event_rate, stacked_num_simulated_events, stacked_num_triggered_events
-        )
-        logging.info(
-            f"System trigger event rate for stacked files: "
-            f"{triggered_event_rate.value:.4e} \u00b1 "
-            f"{triggered_event_rate_uncertainty.value:.4e} Hz"
-        )
-        return (
-            [sim_event_rate],
-            [triggered_event_rate],
-            [triggered_event_rate_uncertainty],
-        )
-
-    def _rates_for_each_file(self, print_info=False):
-        """
-        Calculate trigger rate for each file.
-
-        Returns
-        -------
-        sim_event_rates: list of astropy.Quantity[1/time]
-            The simulated event rates.
-        triggered_event_rates: list of astropy.Quantity[1/time]
-            The triggered event rates.
-        triggered_event_rate_uncertainties: list of astropy.Quantity[1/time]
-            The uncertainties in the triggered event rates.
-        """
-        triggered_event_rates = []
-        sim_event_rates = []
-        trigger_rate_in_tables = []
-        triggered_event_rate_uncertainties = []
-        for i_file, file in enumerate(self.histogram_files):
-            simtel_hist_instance = SimtelIOHistogram(
-                file,
-                area_from_distribution=self.area_from_distribution,
-                energy_range=self.energy_range,
-                view_cone=self.view_cone,
-            )
-            if print_info:
-                simtel_hist_instance.print_info()
-
-            _simulated_events, _triggered_events = simtel_hist_instance.total_number_of_events
-            logging.info(f"Histogram {i_file + 1}:")
-            logging.info(f"Total number of simulated events: {_simulated_events} events")
-            logging.info(f"Total number of triggered events: {_triggered_events} events")
-
-            obs_time = simtel_hist_instance.estimate_observation_time(_simulated_events)
-            logging.info(
-                f"Estimated equivalent observation time corresponding to the number of "
-                f"events simulated: {obs_time.value} s"
-            )
-            if obs_time != 0:
-                sim_event_rate = _simulated_events / obs_time
-            else:
-                sim_event_rate = 0.0 * obs_time.unit
-                logging.warning("Observation time is zero, cannot calculate event rate.")
-            sim_event_rates.append(sim_event_rate)
-            logging.info(f"Simulated event rate: {sim_event_rate.value:.4e} Hz")
-
-            (
-                triggered_event_rate,
-                triggered_event_rate_uncertainty,
-            ) = simtel_hist_instance.compute_system_trigger_rate()
-            logging.info(
-                f"System trigger event rate: "
-                # pylint: disable=E1101
-                f"{triggered_event_rate.value:.4e} \u00b1 "
-                # pylint: disable=E1101
-                f"{triggered_event_rate_uncertainty.value:.4e} Hz"
-            )
-            triggered_event_rates.append(triggered_event_rate)
-            triggered_event_rate_uncertainties.append(triggered_event_rate_uncertainty)
-            trigger_rate_in_tables.append(simtel_hist_instance.trigger_info_in_table())
-        return (
-            sim_event_rates,
-            triggered_event_rates,
-            triggered_event_rate_uncertainties,
-            trigger_rate_in_tables,
-        )
-
-    @property
-    def number_of_files(self):
-        """Returns number of histograms."""
-        return len(self.histogram_files)
-
-    def _check_consistency(self, first_hist_file, second_hist_file):
-        """
-        Check whether two histograms have the same format.
-
-        Raises an error in case they are not consistent.
-
-        Parameters
-        ----------
-        first_hist_file: dict
-            One histogram from a single file.
-        second_hist_file: dict
-            One histogram from a single file.
-
-        Raises
-        ------
-        InconsistentHistogramFormatError:
-            if the format of the histograms have inconsistent dimensions.
-        """
-        for key_to_test in [
-            "lower_x",
-            "upper_x",
-            "n_bins_x",
-            "title",
-        ]:
-            if first_hist_file[key_to_test] != second_hist_file[key_to_test]:
-                msg = "Trying to add histograms with inconsistent dimensions"
-                self._logger.error(msg)
-                raise InconsistentHistogramFormatError
-
-    @property
-    def list_of_histograms(self):
-        """
-        Returns a list with the histograms for each file.
-
-        Returns
-        -------
-        list:
-            List of histograms.
-        """
-        if self._list_of_histograms is None:
-            self._list_of_histograms = []
-            for file in self.histogram_files:
-                with EventIOFile(file) as f:
-                    for o in yield_toplevel_of_type(f, Histograms):
-                        hists = o.parse()
-                        self._list_of_histograms.append(hists)
-        return self._list_of_histograms
-
-    @property
-    def combined_hists(self):
-        """
-        Combine histograms of same type of histogram.
-
-        Histograms are read from various lists into a single histogram list.
-        """
-        # Processing and combining histograms from multiple files
-        if self._combined_hists is None:
-            self._combined_hists = []
-            for histogram_index, hists_one_file in enumerate(self.list_of_histograms):
-                if histogram_index == 0:
-                    # First file
-                    self._combined_hists = copy.copy(hists_one_file)
-
-                else:
-                    for hist, this_combined_hist in zip(hists_one_file, self._combined_hists):
-                        self._check_consistency(hist, this_combined_hist)
-
-                        this_combined_hist["data"] = np.add(
-                            this_combined_hist["data"], hist["data"]
-                        )
-
-            self._logger.debug(f"End of reading {len(self.histogram_files)} files")
-        return self._combined_hists
-
-    @combined_hists.setter
-    def combined_hists(self, new_combined_hists):
-        """
-        Setter for combined_hists.
-
-        Parameters
-        ----------
-        new_combined_hists:
-            Combined histograms.
-        """
-        self._combined_hists = new_combined_hists
-
-    def plot_one_histogram(self, histogram_index, ax):
-        """
-        Plot a single histogram referent to the index histogram_index.
-
-        Parameters
-        ----------
-        histogram_index: int
-            Index of the histogram to be plotted.
-        ax: matplotlib.axes.Axes
-            Instance of matplotlib.axes.Axes in which to plot the histogram.
-        """
-        hist = self.combined_hists[histogram_index]
-        ax.set_title(hist["title"])
-
-        def _get_bins(hist, axis=0):
-            ax_str = "x" if axis == 0 else "y"
-            return np.linspace(
-                hist["lower_" + ax_str],
-                hist["upper_" + ax_str],
-                hist["n_bins_" + ax_str] + 1,
-            )
-
-        def _get_ax_lim(hist, axis=0):
-            if np.sum(hist["data"]) == 0:
-                return 0, 1
-
-            bins = _get_bins(hist, axis=axis)
-
-            if hist["data"].ndim == 1:
-                non_zero = np.where(hist["data"] != 0)
-            else:
-                marginal = np.sum(hist["data"], axis=axis)
-                non_zero = np.where(marginal != 0)
-
-            return bins[non_zero[0][0]], bins[non_zero[0][-1] + 1]
-
-        if hist["n_bins_y"] > 0:
-            # 2D histogram
-
-            xlim = _get_ax_lim(hist, axis=0)
-            ylim = _get_ax_lim(hist, axis=1)
-
-            if np.sum(hist["data"]) == 0:
-                ax.text(
-                    0.5,
-                    0.5,
-                    "EMPTY",
-                    horizontalalignment="center",
-                    verticalalignment="center",
-                    transform=ax.transAxes,
-                )
-                return
-
-            x_bins = _get_bins(hist, axis=0)
-            y_bins = _get_bins(hist, axis=1)
-
-            ax.pcolormesh(x_bins, y_bins, hist["data"])
-            ax.set_xlim(xlim)
-            ax.set_ylim(ylim)
-
-        else:
-            # 1D histogram
-
-            xlim = _get_ax_lim(hist, axis=0)
-
-            if np.sum(hist["data"]) == 0:
-                ax.text(
-                    0.5,
-                    0.5,
-                    "EMPTY",
-                    horizontalalignment="center",
-                    verticalalignment="center",
-                    transform=ax.transAxes,
-                )
-                return
-
-            x_bins = _get_bins(hist, axis=0)
-            centers = 0.5 * (x_bins[:-1] + x_bins[1:])
-            ax.hist(centers, bins=x_bins, weights=hist["data"])
-            ax.set_xlim(xlim)
-
-    @property
-    def _meta_dict(self):
-        """
-        Define the meta dictionary for exporting the histograms.
-
-        Returns
-        -------
-        dict
-            Meta dictionary for the hdf5 files with the histograms.
-        """
-        if self.__meta_dict is None:
-            self.__meta_dict = {
-                "simtools_version": version.__version__,
-                "note": "Only lower bin edges are given.",
-            }
-        return self.__meta_dict
-
-    def export_histograms(self, hdf5_file_name, overwrite=False):
-        """
-        Export sim_telarray histograms to hdf5 files.
-
-        Parameters
-        ----------
-        hdf5_file_name: str
-            Name of the file to be saved with the hdf5 tables.
-        overwrite: bool
-            If True overwrites histograms already saved in the hdf5 file.
-        """
-        self._logger.info(f"Exporting histograms to {hdf5_file_name}.")
-        for histogram in self.combined_hists:
-            x_bin_edges_list = np.linspace(
-                histogram["lower_x"],
-                histogram["upper_x"],
-                num=histogram["n_bins_x"] + 1,
-                endpoint=True,
-            )
-            if histogram["n_bins_y"] > 0:
-                y_bin_edges_list = np.linspace(
-                    histogram["lower_y"],
-                    histogram["upper_y"],
-                    num=histogram["n_bins_y"] + 1,
-                    endpoint=True,
-                )
-            else:
-                y_bin_edges_list = None
-
-            self._meta_dict["Title"] = sanitize_name(histogram["title"])
-
-            table = fill_hdf5_table(
-                hist=histogram["data"],
-                x_bin_edges=x_bin_edges_list,
-                y_bin_edges=y_bin_edges_list,
-                x_label=None,
-                y_label=None,
-                meta_data=self._meta_dict,
-            )
-
-            self._logger.debug(
-                f"Writing histogram with name {self._meta_dict['Title']} to {hdf5_file_name}."
-            )
-            # overwrite takes precedence over append
-            write_table(
-                table,
-                hdf5_file_name,
-                f"/{self._meta_dict['Title']}",
-                append=not overwrite,
-                overwrite=overwrite,
-            )