gammasimtools 0.19.0__py3-none-any.whl → 0.21.0__py3-none-any.whl

simtools/applications/generate_sim_telarray_histograms.py

@@ -1,196 +0,0 @@
-#!/usr/bin/python3
-
-r"""
-    Write sim_telarray histograms into pdf and hdf5 files.
-
-    It accepts multiple lists of histograms files, a single list or a histogram file.
-    Each histogram is plotted in a page of the pdf file if the --pdf option is activated.
-
-
-    Command line arguments
-    ----------------------
-    hist_file_names (str, optional)
-        Name of the histogram files to be plotted.
-        It can be given as the histogram file names (more than one option allowed) or as a text
-        file with the names of the histogram files in it.
-    pdf (bool, optional)
-        If set, histograms are saved into pdf files.
-        One pdf file contains all the histograms found in the file.
-        The name of the file is controlled via output_file_name.
-    hdf5: bool
-        If true, histograms are saved into hdf5 files.
-        At least one of pdf and hdf5 has to be activated.
-    output_file_name (str, optional)
-        The name of the output hdf5 (and/or pdf) files (without the path).
-        If not given, output_file_name takes the name from the (first) input file
-        (hist_file_names).
-        If the output output_file_name.hdf5 file already exists and hdf5 is set, the tables
-        associated to hdf5 will be overwritten. The remaining tables, if any, will stay
-        untouched.
-    test: bool
-        Test option. Generate only two histograms for testing purposes.
-
-    Raises
-    ------
-    TypeError:
-        if argument passed through hist_file_names is not a file.
-
-    Example
-    -------
-    .. code-block:: console
-
-        simtools-generate-sim-telarray-histograms --hist_file_names tests/resources/ \\
-            run2_gamma_za20deg_azm0deg-North-Prod5_test-production-5.hdata.zst \\
-            --output_file_name test_hist_hdata --hdf5 --pdf
-
-"""
-
-import logging
-from pathlib import Path
-
-import matplotlib.pyplot as plt
-from matplotlib.backends.backend_pdf import PdfPages
-
-import simtools.utils.general as gen
-from simtools.configuration import configurator
-from simtools.io import io_handler
-from simtools.simtel.simtel_io_histograms import SimtelIOHistograms
-
-
-def _parse(label, description):
-    """
-    Parse command line configuration.
-
-    Parameters
-    ----------
-    label: str
-        Label describing the application.
-    description: str
-        Description of the application.
-
-    Returns
-    -------
-    CommandLineParser
-        Command line parser object
-
-    """
-    config = configurator.Configurator(label=label, description=description)
-
-    config.parser.add_argument(
-        "--hist_file_names",
-        help="Name of the histogram files to be plotted or the text file containing the list of "
-        "histogram files.",
-        nargs="+",
-        required=True,
-        type=str,
-    )
-
-    config.parser.add_argument(
-        "--hdf5", help="Save histograms into a hdf5 file.", action="store_true", required=False
-    )
-
-    config.parser.add_argument(
-        "--pdf", help="Save histograms into a pdf file.", action="store_true", required=False
-    )
-
-    config.parser.add_argument(
-        "--output_file_name",
-        help="Name of the hdf5 (and/or pdf) file where to save the histograms.",
-        type=str,
-        required=False,
-        default=None,
-    )
-
-    config_parser, _ = config.initialize(db_config=False, paths=True)
-    if not config_parser["pdf"] and not config_parser["hdf5"]:
-        config.parser.error("At least one argument is required: --pdf or --hdf5.")
-
-    return config_parser
-
-
-def check_and_log_overwrite(config_parser, logger):
-    """
-    Check if the output hdf5 file already exists and log a warning if it does.
-
-    Parameters
-    ----------
-    config_parser: dict
-        Parsed command line arguments.
-    logger: logging.Logger
-        Logger object for logging messages.
-
-    Returns
-    -------
-    bool
-        True if the hdf5 file exists and should be overwritten.
-    """
-    if Path(f"{config_parser['output_file_name']}.hdf5").exists() and config_parser["hdf5"]:
-        msg = (
-            f"Output hdf5 file {config_parser['output_file_name']}.hdf5 already exists. "
-            f"Overwriting it."
-        )
-        logger.warning(msg)
-        return True
-    return False
-
-
-def create_pdf(simtel_histograms, output_file_name, config_parser, logger):
-    """
-    Create a PDF file containing histograms.
-
-    Parameters
-    ----------
-    simtel_histograms: SimtelIOHistograms
-        SimtelIOHistograms object containing histograms to plot.
-    output_file_name: str
-        Base name for the output PDF file.
-    config_parser: dict
-        Parsed command line arguments.
-    logger: logging.Logger
-        Logger object for logging messages.
-    """
-    if config_parser["pdf"]:
-        logger.debug(f"Creating the pdf file {output_file_name}.pdf")
-        pdf_pages = PdfPages(f"{output_file_name}.pdf")
-        number_of_histograms = 2 if config_parser["test"] else len(simtel_histograms.combined_hists)
-        for i_hist in range(number_of_histograms):
-            logger.debug(f"Processing: {i_hist + 1} histogram.")
-            fig, ax = plt.subplots(1, 1, figsize=(6, 6))
-            simtel_histograms.plot_one_histogram(i_hist, ax)
-            plt.tight_layout()
-            pdf_pages.savefig(fig)
-            plt.clf()
-        plt.close()
-        pdf_pages.close()
-        logger.info(f"Wrote histograms to the pdf file {output_file_name}.pdf")
-
-
-def main():  # noqa: D103
-    label = Path(__file__).stem
-    description = "Display sim_telarray histograms and/or write them into hdf5 format."
-    io_handler_instance = io_handler.IOHandler()
-    config_parser = _parse(label, description)
-    output_path = io_handler_instance.get_output_directory(label, sub_dir="application-plots")
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(config_parser["log_level"]))
-
-    histogram_files = gen.get_list_of_files_from_command_line(
-        config_parser["hist_file_names"], [".zst", ".simtel", ".hdata"]
-    )
-
-    # If no output name is passed, the tool gets the name of the first histogram of the list
-    if config_parser["output_file_name"] is None:
-        config_parser["output_file_name"] = Path(histogram_files[0]).absolute().name
-    output_file_name = Path(output_path).joinpath(f"{config_parser['output_file_name']}")
-
-    simtel_histograms = SimtelIOHistograms(histogram_files)
-    create_pdf(simtel_histograms, output_file_name, config_parser, logger)
-    if config_parser["hdf5"]:
-        simtel_histograms.export_histograms(
-            f"{output_file_name}.hdf5",
-            overwrite=check_and_log_overwrite(config_parser, logger),
-        )
-
-
-if __name__ == "__main__":
-    main()

simtools/applications/maintain_simulation_model_add_production_table.py

@@ -1,71 +0,0 @@
-r"""
-Generate new simulation model production tables by copying existing table and apply modifications.
-
-This script should be used to maintain the simulation model repository. It allow to create a
-new production table by copying an existing base version and apply modification defined in a YAML
-file (see the example file listed below).
-
-Example
--------
-.. code-block:: console
-
-    simtools-maintain-simulation-model-add-production-table \\
-        --simulation_models_path ../simulation-models-dev/simulation-models/ \\
-        --source_prod_table_dir 6.0.0 \\
-        --modifications tests/resources/production_tables_changes_for_threshold_study_6.2.0.yml
-
-"""
-
-import logging
-from pathlib import Path
-
-import simtools.utils.general as gen
-from simtools.configuration import configurator
-from simtools.model import model_repository
-
-
-def _parse(label, description):
-    """
-    Parse command line arguments.
-
-    Returns
-    -------
-    dict
-        Parsed command-line arguments.
-    """
-    config = configurator.Configurator(label=label, description=description)
-    config.parser.add_argument(
-        "--simulation_models_path",
-        type=str,
-        required=True,
-        help="Path to the simulation models repository.",
-    )
-    config.parser.add_argument(
-        "--source_prod_table_dir",
-        type=str,
-        required=True,
-        help="The source production table directory to copy from.",
-    )
-    config.parser.add_argument(
-        "--modifications",
-        type=str,
-        required=True,
-        help="File containing the list of changes to apply.",
-    )
-
-    return config.initialize(db_config=False, output=False)
-
-
-def main():  # noqa: D103
-    label = Path(__file__).stem
-    args_dict, _ = _parse(
-        label=label, description=("Copy and update simulation model production tables.")
-    )
-    logger = logging.getLogger()
-    logger.setLevel(gen.get_log_level_from_user(args_dict["log_level"]))
-
-    model_repository.copy_and_update_production_table(args_dict)
-
-
-if __name__ == "__main__":
-    main()