freealg 0.7.17__py3-none-any.whl → 0.7.18__py3-none-any.whl

freealg/visualization/_plot_util.py

@@ -0,0 +1,513 @@
+# SPDX-FileCopyrightText: Copyright 2025, Siavash Ameli <sameli@berkeley.edu>
+# SPDX-License-Identifier: BSD-3-Clause
+# SPDX-FileType: SOURCE
+#
+# This program is free software: you can redistribute it and/or modify it under
+# the terms of the license found in the LICENSE.txt file in the root directory
+# of this source tree.
+
+
+# =======
+# Imports
+# =======
+
+import numpy
+import matplotlib.pyplot as plt
+import texplot
+import matplotlib
+import matplotlib.ticker as ticker
+import matplotlib.gridspec as gridspec
+from ..visualization import domain_coloring
+
+__all__ = ['plot_density', 'plot_hilbert', 'plot_stieltjes',
+           'plot_stieltjes_on_disk', 'plot_samples']
+
+
+# =========
+# auto bins
+# =========
+
+def _auto_bins(array, method='scott', factor=5):
+    """
+    Automatic choice for the number of bins for the histogram of an array.
+
+    Parameters
+    ----------
+
+    array : numpy.array
+        An array for histogram.
+
+    method : {``'freedman'``, ``'scott'``, ``'sturges'``}, default= ``'scott'``
+        Method of choosing number of bins.
+
+    Returns
+    -------
+
+    num_bins : int
+        Number of bins for histogram.
+    """
+
+    if method == 'freedman':
+
+        q75, q25 = numpy.percentile(array, [75, 25])
+        iqr = q75 - q25
+        bin_width = 2 * iqr / (len(array) ** (1/3))
+
+        if bin_width == 0:
+            # Fallback default
+            return
+            num_bins = 100
+        else:
+            num_bins = int(numpy.ceil((array.max() - array.min()) / bin_width))
+
+    elif method == 'scott':
+
+        std = numpy.std(array)
+        bin_width = 3.5 * std / (len(array) ** (1/3))
+        num_bins = int(numpy.ceil((array.max() - array.min()) / bin_width))
+
+    elif method == 'sturges':
+
+        num_bins = int(numpy.ceil(numpy.log2(len(array)) + 1))
+
+    else:
+        raise NotImplementedError('"method" is invalid.')
+
+    return num_bins * factor
+
+
+# ============
+# plot density
+# ============
+
+def plot_density(x, rho, eig=None, atoms=None, support=None, label='',
+                 title='Spectral Density', latex=False, save=False):
+    """
+    Parameters
+    ----------
+
+    atoms : list of tuples, default=None
+        A list such as ``[(t1, w1), ..., (tk, wk)]`` where ``ti`` are the atom
+        locations and ``wi`` are their weight. The sum of the weights should be
+        one. If this is given, each atom is shown with a arrow, with the height
+        equals its weight corresponding to the right ordinate axis.
+    """
+
+    with texplot.theme(use_latex=latex):
+
+        fig, ax = plt.subplots(figsize=(6, 2.6))
+
+        ax.plot(x, rho, color='black', label=label, zorder=3)
+
+        ax.set_xlim([x[0], x[-1]])
+        ax.set_ylim(bottom=0)
+
+        # Lock y autoscaling so hist won't change it if there is an atom
+        ax.relim()
+        ax.autoscale_view(scalex=False, scaley=True)
+        ax.set_autoscaley_on(False)
+
+        if eig is not None:
+            if support is not None:
+                lam_m, lam_p = support
+            else:
+                lam_m, lam_p = min(eig), max(eig)
+            bins = numpy.linspace(lam_m, lam_p, _auto_bins(eig))
+            _ = ax.hist(eig, bins, density=True, color='silver',
+                        edgecolor='none', label='Histogram')
+        else:
+            plt.fill_between(x, y1=rho, y2=0, color='silver', zorder=-1)
+
+        if atoms is not None:
+            ax2 = ax.twinx()
+            ax2.set_ylim([0, 1])
+            ax2.set_ylabel(r'Atom weight $w$')
+
+            for atom_loc, atom_w in atoms:
+                ax2.annotate('', xy=(atom_loc, atom_w), xytext=(atom_loc, 0.0),
+                             zorder=10, annotation_clip=False,
+                             arrowprops={
+                                'arrowstyle': '-|>',
+                                'linewidth': 1.4,
+                                'color': 'black',
+                                'shrinkA': 0.0,
+                                'shrinkB': 0.0,
+                                'mutation_scale': 9})
+
+        ax.set_xlabel(r'$\lambda$')
+        ax.set_ylabel(r'$\rho(\lambda)$''')
+        ax.set_title(title)
+
+        if label != '':
+            ax.legend(fontsize='small')
+
+        # Save
+        if save is False:
+            save_status = False
+            save_filename = ''
+        else:
+            save_status = True
+            if isinstance(save, str):
+                save_filename = save
+            else:
+                save_filename = 'density.pdf'
+
+        texplot.show_or_save_plot(plt, default_filename=save_filename,
+                                  transparent_background=True, dpi=400,
+                                  show_and_save=save_status, verbose=True)
+
+
+# ============
+# plot hilbert
+# ============
+
+def plot_hilbert(x, hilb, support=None, latex=False, save=False):
+    """
+    """
+
+    with texplot.theme(use_latex=latex):
+
+        fig, ax = plt.subplots(figsize=(6, 2.7))
+
+        if support is not None:
+            lam_m, lam_p = support
+            ax.plot(x, hilb, color='black', zorder=3)
+            ax.axvline(lam_m, linestyle='--', linewidth=1, color='darkgray',
+                       label=r'$\lambda_{\pm}$')
+            ax.axvline(lam_p, linestyle='--', linewidth=1, color='darkgray')
+
+        ax.axhline(0, linestyle='--', linewidth=0.5, color='gray', zorder=-1)
+
+        ax.set_xlim([x[0], x[-1]])
+        ax.set_xlabel(r'$x$')
+        ax.set_ylabel(r'$\mathcal{H}[\rho](x)$')
+        ax.set_title('Hilbert Transform')
+        ax.legend(fontsize='small')
+
+        # Make sure y=0 is in the y ticks.
+        yt = list(ax.get_yticks())
+        if 0 not in yt:
+            yt.append(0)
+        yt = sorted(yt)
+        ax.set_yticks(yt)
+
+        # Save
+        if save is False:
+            save_status = False
+            save_filename = ''
+        else:
+            save_status = True
+            if isinstance(save, str):
+                save_filename = save
+            else:
+                save_filename = 'hilbert.pdf'
+
+        texplot.show_or_save_plot(plt, default_filename=save_filename,
+                                  transparent_background=True, dpi=400,
+                                  show_and_save=save_status, verbose=True)
+
+
+# ===============
+# value formatter
+# ===============
+
+def _value_formatter(v, pos):
+    """
+    """
+
+    # v is the normalized "value" channel: v = 1 - exp(-|m(z)|)
+    # Invert the mapping: |m(z)| = -ln(1-v)
+    if v >= 1:
+        return r'$\infty$'
+    elif v == 0:
+        return r'0'
+    else:
+        m_val = -numpy.log(1 - v)
+        return f"{m_val:.1f}"
+
+
+# ==============
+# plot stieltjes
+# ==============
+
+def plot_stieltjes(x, y, m1, m2, support, latex=False, save=False):
+    """
+    """
+
+    lam_m, lam_p = support
+    x_min = numpy.min(x)
+    x_max = numpy.max(x)
+    y_min = numpy.min(y)
+    y_max = numpy.max(y)
+    n_y = y.size
+
+    with texplot.theme(use_latex=latex):
+
+        fig = plt.figure(figsize=(12, 4))
+        gs = gridspec.GridSpec(1, 3, width_ratios=[1, 1, 0.2], wspace=0.3)
+
+        eps = 2 / n_y
+        shift = 0.0
+
+        ax0 = fig.add_subplot(gs[0])
+        ax0.imshow(domain_coloring(m1, shift=shift),
+                   extent=[x_min, x_max, y_min, y_max], origin='lower',
+                   interpolation='gaussian', rasterized=True)
+        ax0.plot([lam_m, lam_p], [eps, eps], 'o', markersize=1.5,
+                 color='black')
+        ax0.plot([lam_m, lam_p], [eps, eps], '-', linewidth=1, color='black')
+        ax0.set_xlabel(r'$\mathrm{Re}(z)$')
+        ax0.set_ylabel(r'$\mathrm{Im}(z)$')
+        ax0.set_title(r'(a) Principal Branch on $\mathbb{C}^{+}$ and ' +
+                      r'$\mathbb{C}^{-}$')
+        ax0.set_yticks(numpy.arange(y_min, y_max+0.01, 0.5))
+        ax0.set_xlim([x_min, x_max])
+        ax0.set_ylim([y_min, y_max])
+
+        ax1 = fig.add_subplot(gs[1])
+        ax1.imshow(domain_coloring(m2, shift=shift),
+                   extent=[x_min, x_max, y_min, y_max], origin='lower',
+                   interpolation='gaussian', rasterized=True)
+        ax1.plot([lam_m, lam_p], [eps, eps], 'o', markersize=1.5,
+                 color='black')
+        ax1.plot([x_min, lam_m], [eps, eps], '-', linewidth=1, color='black')
+        ax1.plot([lam_p, x_max], [eps, eps], '-', linewidth=1, color='black')
+        ax1.set_xlabel(r'$\mathrm{Re}(z)$')
+        ax1.set_ylabel(r'$\mathrm{Im}(z)$')
+        ax1.set_title(r'(b) Principal Branch on $\mathbb{C}^{+}$, Secondary ' +
+                      r'Branch on $\mathbb{C}^{-}$')
+        ax1.set_yticks(numpy.arange(y_min, y_max+0.01, 0.5))
+        ax1.set_xlim([x_min, x_max])
+        ax1.set_ylim([y_min, y_max])
+
+        pos = ax1.get_position()
+        cbar_width = 0.013
+        pad = 0.013
+
+        # gs_cb = gridspec.GridSpecFromSubplotSpec(2, 1, subplot_spec=gs[2],
+        #                                          hspace=0.4)
+        gridspec.GridSpecFromSubplotSpec(1, 2, subplot_spec=gs[2],
+                                         width_ratios=[1, 1], wspace=0.05)
+
+        # Create two separate axes for colorbars using make_axes_locatable:
+        # divider = make_axes_locatable(ax[1])
+        # cax_hue = divider.append_axes("right", size="4%", pad=0.12)
+        # cax_value = divider.append_axes("right", size="4%", pad=0.7)
+
+        # cax_hue = fig.add_subplot(gs_cb[0])
+        cax_hue = fig.add_axes([pos.x1 + pad, pos.y0, cbar_width, pos.height])
+        norm_hue = matplotlib.colors.Normalize(vmin=-numpy.pi, vmax=numpy.pi)
+        cmap_hue = plt.get_cmap('hsv')
+        sm_hue = plt.cm.ScalarMappable(norm=norm_hue, cmap=cmap_hue)
+        sm_hue.set_array([])
+        cb_hue = fig.colorbar(sm_hue, cax=cax_hue)
+        cb_hue.set_label(r'$\mathrm{Arg}(m(z))$', labelpad=-6)
+        cb_hue.set_ticks([-numpy.pi, 0, numpy.pi])
+        cb_hue.set_ticklabels([r'$-\pi$', '0', r'$\pi$'])
+
+        # cax_value = fig.add_subplot(gs_cb[1])
+        cax_value = fig.add_axes([pos.x1 + 4.4*pad + cbar_width, pos.y0,
+                                  cbar_width, pos.height])
+        norm_value = matplotlib.colors.Normalize(vmin=0, vmax=1)
+        cmap_value = plt.get_cmap('gray')
+        sm_value = plt.cm.ScalarMappable(norm=norm_value, cmap=cmap_value)
+        sm_value.set_array([])
+        cb_value = fig.colorbar(sm_value, cax=cax_value)
+        ticks_norm = [0, 1 - numpy.exp(-0.5), 1 - numpy.exp(-1),
+                      1 - numpy.exp(-2), 1]
+        cb_value.set_ticks(ticks_norm)
+        cb_value.ax.yaxis.set_major_formatter(
+            ticker.FuncFormatter(_value_formatter))
+        cb_value.set_ticklabels(["0", r"$\frac{1}{2}$", "1", "2", r"$\infty$"])
+        cb_value.set_label(r'$|m(z)|$', labelpad=0)
+
+        plt.tight_layout()
+
+        # Save
+        if save is False:
+            save_status = False
+            save_filename = ''
+        else:
+            save_status = True
+            if isinstance(save, str):
+                save_filename = save
+            else:
+                save_filename = 'stieltjes.pdf'
+
+        texplot.show_or_save_plot(plt, default_filename=save_filename,
+                                  transparent_background=True, dpi=400,
+                                  show_and_save=save_status, verbose=True)
+
+
+# ======================
+# plot stieltjes on disk
+# ======================
+
+def plot_stieltjes_on_disk(r, t, m1_D, m2_D, support, latex=False, save=False):
+    """
+    """
+
+    grid_r, grid_t = numpy.meshgrid(r, t)
+
+    # Inverse Cayley
+    lam_m, lam_p = support
+    lam_p_z = (lam_p - 1j) / (lam_p + 1j)
+    lam_m_z = (lam_m - 1j) / (lam_m + 1j)
+    theta_p = numpy.angle(lam_p_z)
+    theta_n = numpy.angle(lam_m_z)
+
+    if theta_n < 0:
+        theta_n += 2.0 * numpy.pi
+    if theta_p < 0:
+        theta_p += 2.0 * numpy.pi
+
+    theta_branch = numpy.linspace(theta_n, theta_p, 100)
+    theta_alt_branch = numpy.linspace(theta_p, theta_n + 2*numpy.pi, 100)
+    r_branch = numpy.ones_like(theta_branch)
+
+    with texplot.theme(use_latex=latex):
+
+        fig = plt.figure(figsize=(12, 4))
+        # gs = gridspec.GridSpec(1, 3, width_ratios=[1, 1, 0.2], wspace=0.3)
+        gs = gridspec.GridSpec(1, 3, width_ratios=[1, 1, 0.2], wspace=-0.75)
+
+        shift = 0.0
+
+        ax0 = fig.add_subplot(gs[0], projection='polar')
+        ax0.pcolormesh(grid_t, grid_r, domain_coloring(m1_D, shift=shift),
+                       shading='auto', rasterized=True)
+        ax0.plot(theta_branch, r_branch, '-', linewidth=1, color='black')
+        ax0.plot(theta_n, 0.994, 'o', markersize=1.5, color='black')
+        ax0.plot(theta_p, 0.994, 'o', markersize=1.5, color='black')
+        ax0.set_theta_zero_location("E")  # zero on left
+        ax0.set_theta_direction(1)        # angles increase anti-clockwise
+        # ax.set_rticks([1, r_max])
+        ax0.set_rticks([])
+        ax0.set_thetagrids(
+            angles=[0, 90, 180, 270],
+            labels=[r'$0$', r'$\frac{\pi}{2}$', r'$\pi$', r'$\frac{3\pi}{2}$'])
+        ax0.tick_params(axis='x', pad=-2)
+        ax0.grid(False)
+        # ax0.set_xlabel(r'$\mathrm{Re}(z)$')
+        # ax0.set_ylabel(r'$\mathrm{Im}(z)$')
+        ax0.set_title(
+            r'(a) Principal Branch on $\mathbb{D}$ and $\mathbb{D}^{c}$',
+            pad=25)
+
+        ax1 = fig.add_subplot(gs[1], projection='polar')
+        ax1.pcolormesh(grid_t, grid_r, domain_coloring(m2_D, shift=shift),
+                       shading='auto', rasterized=True)
+        ax1.plot(theta_alt_branch, r_branch, '-', linewidth=1, color='black')
+        ax1.plot(theta_n, 0.994, 'o', markersize=1.5, color='black')
+        ax1.plot(theta_p, 0.994, 'o', markersize=1.5, color='black')
+        ax1.set_theta_zero_location("E")  # zero on left
+        ax1.set_theta_direction(1)        # angles increase anti-clockwise
+        # ax.set_rticks([1, r_max])
+        ax1.set_rticks([])
+        ax1.set_thetagrids(
+            angles=[0, 90, 180, 270],
+            labels=[r'$0$', r'$\frac{\pi}{2}$', r'$\pi$', r'$\frac{3\pi}{2}$'])
+        ax1.tick_params(axis='x', pad=-2)
+        ax1.grid(False)
+        # ax0.set_xlabel(r'$\mathrm{Re}(z)$')
+        # ax0.set_ylabel(r'$\mathrm{Im}(z)$')
+        ax1.set_title(r'(b) Principal Branch on $\mathbb{D}$, Secondary ' +
+                      r'Branch on $\mathbb{D}^{c}$', pad=25)
+
+        pos = ax1.get_position()
+        cbar_width = 0.013
+        pad = 0.013
+
+        # gs_cb = gridspec.GridSpecFromSubplotSpec(2, 1, subplot_spec=gs[2],
+        #                                          hspace=0.4)
+        gridspec.GridSpecFromSubplotSpec(1, 2, subplot_spec=gs[2],
+                                         width_ratios=[1, 1], wspace=0.08)
+
+        # Create two separate axes for colorbars using make_axes_locatable:
+        # divider = make_axes_locatable(ax[1])
+        # cax_hue = divider.append_axes("right", size="4%", pad=0.12)
+        # cax_value = divider.append_axes("right", size="4%", pad=0.7)
+
+        # cax_hue = fig.add_subplot(gs_cb[0])
+        cax_hue = fig.add_axes(
+            [pos.x1 + 2.5*pad, pos.y0, cbar_width, pos.height])
+        norm_hue = matplotlib.colors.Normalize(vmin=-numpy.pi, vmax=numpy.pi)
+        cmap_hue = plt.get_cmap('hsv')
+        sm_hue = plt.cm.ScalarMappable(norm=norm_hue, cmap=cmap_hue)
+        sm_hue.set_array([])
+        cb_hue = fig.colorbar(sm_hue, cax=cax_hue)
+        cb_hue.set_label(r'$\mathrm{Arg}(m(\zeta))$', labelpad=-6)
+        cb_hue.set_ticks([-numpy.pi, 0, numpy.pi])
+        cb_hue.set_ticklabels([r'$-\pi$', '0', r'$\pi$'])
+
+        # cax_value = fig.add_subplot(gs_cb[1])
+        cax_value = fig.add_axes([pos.x1 + (4.4+2.5)*pad + cbar_width, pos.y0,
+                                  cbar_width, pos.height])
+        norm_value = matplotlib.colors.Normalize(vmin=0, vmax=1)
+        cmap_value = plt.get_cmap('gray')
+        sm_value = plt.cm.ScalarMappable(norm=norm_value, cmap=cmap_value)
+        sm_value.set_array([])
+        cb_value = fig.colorbar(sm_value, cax=cax_value)
+        ticks_norm = [0, 1 - numpy.exp(-0.5), 1 - numpy.exp(-1),
+                      1 - numpy.exp(-2), 1]
+        cb_value.set_ticks(ticks_norm)
+        cb_value.ax.yaxis.set_major_formatter(ticker.FuncFormatter(
+                                              _value_formatter))
+        cb_value.set_ticklabels(["0", r"$\frac{1}{2}$", "1", "2", r"$\infty$"])
+        cb_value.set_label(r'$|m(\zeta)|$', labelpad=0)
+
+        plt.tight_layout()
+
+        # Save
+        if save is False:
+            save_status = False
+            save_filename = ''
+        else:
+            save_status = True
+            if isinstance(save, str):
+                save_filename = save
+            else:
+                save_filename = 'stieltjes_disk.pdf'
+
+        texplot.show_or_save_plot(plt, default_filename=save_filename,
+                                  transparent_background=True, dpi=400,
+                                  show_and_save=save_status, verbose=True)
+
+
+# ============
+# plot samples
+# ============
+
+def plot_samples(x, rho, x_min, x_max, samples, latex=False, save=False):
+    """
+    """
+
+    with texplot.theme(use_latex=latex):
+
+        fig, ax = plt.subplots(figsize=(6, 3))
+
+        bins = numpy.linspace(x_min, x_max, _auto_bins(samples))
+        _ = ax.hist(samples, bins, density=True, color='silver',
+                    edgecolor='none', label='Samples histogram')
+        ax.plot(x, rho, color='black', label='Exact density')
+        ax.legend(fontsize='small')
+        ax.set_ylim(bottom=0)
+        ax.set_xlim([x[0], x[-1]])
+        ax.set_xlabel(r'$\lambda$')
+        ax.set_ylabel(r'$\rho(\lambda)$''')
+        ax.set_title('Histogram of Samples from Distribution')
+
+        # Save
+        if save is False:
+            save_status = False
+            save_filename = ''
+        else:
+            save_status = True
+            if isinstance(save, str):
+                save_filename = save
+            else:
+                save_filename = 'samples.pdf'
+
+        texplot.show_or_save_plot(plt, default_filename=save_filename,
+                                  transparent_background=True, dpi=400,
+                                  show_and_save=save_status, verbose=True)

{freealg-0.7.17.dist-info → freealg-0.7.18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: freealg
-Version: 0.7.17
+Version: 0.7.18
 Summary: Free probability for large matrices
 Home-page: https://github.com/ameli/freealg
 Download-URL: https://github.com/ameli/freealg/archive/main.zip

freealg-0.7.18.dist-info/RECORD

@@ -0,0 +1,74 @@
+freealg/__init__.py,sha256=cYlTK-p0vahmCwXA_y2h3vhsAxyQu9dv_kGR2H7U-Hw,910
+freealg/__version__.py,sha256=vVEAGXrQny527lFZaiZOphUeWZVJTDThg2Wd7GndISQ,23
+freealg/_base_form.py,sha256=ZZ6foORoZIf5hRl9m35eAMqZ0xazEDsToPWkIyqcM8g,10350
+freealg/_sample.py,sha256=rhfd_83TCTvvJh8cG8TzEYO4OR8VbtND2YCNtWEhMa8,3205
+freealg/_support.py,sha256=B6oSqW7MGikpJlTGzNbnMF63LhI5al2ccToqcncTPYs,6624
+freealg/_util.py,sha256=t8scfvkzntXnpN7BsBP6lbshhdb2NkVJ1KVOzDv8JiY,3597
+freealg/_algebraic_form/__init__.py,sha256=etgaRiuipcmxtwHzMVxZwO_qbX8R7m9j39mKvgRyTZg,463
+freealg/_algebraic_form/_branch_points.py,sha256=jCLXZPL5AXkoSMrxToASlQUL0ow2WM-yho994DQMYMA,7787
+freealg/_algebraic_form/_constraints.py,sha256=xBpsKAL0-Czxf9ZF9tspLpTaFJ1m2DDyqc2KH9bl5Xg,3601
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