fastembed-bio 0.1.0__py3-none-any.whl

fastembed/late_interaction_multimodal/onnx_multimodal_model.py

@@ -0,0 +1,291 @@
+import contextlib
+import os
+from multiprocessing import get_all_start_methods
+from pathlib import Path
+from typing import Any, Iterable, Sequence, Type
+
+import numpy as np
+from PIL import Image
+from tokenizers import Encoding, Tokenizer
+
+from fastembed.common import OnnxProvider, ImageInput
+from fastembed.common.onnx_model import EmbeddingWorker, OnnxModel, OnnxOutputContext, T
+from fastembed.common.preprocessor_utils import load_tokenizer, load_preprocessor
+from fastembed.common.types import NumpyArray, Device
+from fastembed.common.utils import iter_batch
+from fastembed.image.transform.operators import Compose
+from fastembed.parallel_processor import ParallelWorkerPool
+
+
+class OnnxMultimodalModel(OnnxModel[T]):
+    ONNX_OUTPUT_NAMES: list[str] | None = None
+
+    def __init__(self) -> None:
+        super().__init__()
+        self.tokenizer: Tokenizer | None = None
+        self.processor: Compose | None = None
+        self.special_token_to_id: dict[str, int] = {}
+
+    def _preprocess_onnx_text_input(
+        self, onnx_input: dict[str, NumpyArray], **kwargs: Any
+    ) -> dict[str, NumpyArray]:
+        """
+        Preprocess the onnx input.
+        """
+        return onnx_input
+
+    def _preprocess_onnx_image_input(
+        self, onnx_input: dict[str, NumpyArray], **kwargs: Any
+    ) -> dict[str, NumpyArray]:
+        """
+        Preprocess the onnx input.
+        """
+        return onnx_input
+
+    @classmethod
+    def _get_text_worker_class(cls) -> Type["TextEmbeddingWorker[T]"]:
+        raise NotImplementedError("Subclasses must implement this method")
+
+    @classmethod
+    def _get_image_worker_class(cls) -> Type["ImageEmbeddingWorker[T]"]:
+        raise NotImplementedError("Subclasses must implement this method")
+
+    def _post_process_onnx_image_output(self, output: OnnxOutputContext) -> Iterable[T]:
+        raise NotImplementedError("Subclasses must implement this method")
+
+    def _post_process_onnx_text_output(self, output: OnnxOutputContext) -> Iterable[T]:
+        raise NotImplementedError("Subclasses must implement this method")
+
+    def _load_onnx_model(
+        self,
+        model_dir: Path,
+        model_file: str,
+        threads: int | None,
+        providers: Sequence[OnnxProvider] | None = None,
+        cuda: bool | Device = Device.AUTO,
+        device_id: int | None = None,
+        extra_session_options: dict[str, Any] | None = None,
+    ) -> None:
+        super()._load_onnx_model(
+            model_dir=model_dir,
+            model_file=model_file,
+            threads=threads,
+            providers=providers,
+            cuda=cuda,
+            device_id=device_id,
+            extra_session_options=extra_session_options,
+        )
+        self.tokenizer, self.special_token_to_id = load_tokenizer(model_dir=model_dir)
+        assert self.tokenizer is not None
+        self.processor = load_preprocessor(model_dir=model_dir)
+
+    def load_onnx_model(self) -> None:
+        raise NotImplementedError("Subclasses must implement this method")
+
+    def tokenize(self, documents: list[str], **kwargs: Any) -> list[Encoding]:
+        return self.tokenizer.encode_batch(documents)  # type: ignore[union-attr]
+
+    def onnx_embed_text(
+        self,
+        documents: list[str],
+        **kwargs: Any,
+    ) -> OnnxOutputContext:
+        encoded = self.tokenize(documents, **kwargs)
+        input_ids = np.array([e.ids for e in encoded])
+        attention_mask = np.array([e.attention_mask for e in encoded])  # type: ignore[union-attr]
+        input_names = {node.name for node in self.model.get_inputs()}  # type: ignore[union-attr]
+        onnx_input: dict[str, NumpyArray] = {
+            "input_ids": np.array(input_ids, dtype=np.int64),
+        }
+        if "attention_mask" in input_names:
+            onnx_input["attention_mask"] = np.array(attention_mask, dtype=np.int64)
+        if "token_type_ids" in input_names:
+            onnx_input["token_type_ids"] = np.array(
+                [np.zeros(len(e), dtype=np.int64) for e in input_ids], dtype=np.int64
+            )
+
+        onnx_input = self._preprocess_onnx_text_input(onnx_input, **kwargs)
+        model_output = self.model.run(self.ONNX_OUTPUT_NAMES, onnx_input)  # type: ignore[union-attr]
+        return OnnxOutputContext(
+            model_output=model_output[0],
+            attention_mask=onnx_input.get("attention_mask", attention_mask),
+            input_ids=onnx_input.get("input_ids", input_ids),
+        )
+
+    def _embed_documents(
+        self,
+        model_name: str,
+        cache_dir: str,
+        documents: str | Iterable[str],
+        batch_size: int = 256,
+        parallel: int | None = None,
+        providers: Sequence[OnnxProvider] | None = None,
+        cuda: bool | Device = Device.AUTO,
+        device_ids: list[int] | None = None,
+        local_files_only: bool = False,
+        specific_model_path: str | None = None,
+        extra_session_options: dict[str, Any] | None = None,
+        **kwargs: Any,
+    ) -> Iterable[T]:
+        is_small = False
+
+        if isinstance(documents, str):
+            documents = [documents]
+            is_small = True
+
+        if isinstance(documents, list):
+            if len(documents) < batch_size:
+                is_small = True
+
+        if parallel is None or is_small:
+            if not hasattr(self, "model") or self.model is None:
+                self.load_onnx_model()
+            for batch in iter_batch(documents, batch_size):
+                yield from self._post_process_onnx_text_output(self.onnx_embed_text(batch))
+        else:
+            if parallel == 0:
+                parallel = os.cpu_count()
+
+            start_method = "forkserver" if "forkserver" in get_all_start_methods() else "spawn"
+            params = {
+                "model_name": model_name,
+                "cache_dir": cache_dir,
+                "providers": providers,
+                "local_files_only": local_files_only,
+                "specific_model_path": specific_model_path,
+                **kwargs,
+            }
+
+            if extra_session_options is not None:
+                params.update(extra_session_options)
+
+            pool = ParallelWorkerPool(
+                num_workers=parallel or 1,
+                worker=self._get_text_worker_class(),
+                cuda=cuda,
+                device_ids=device_ids,
+                start_method=start_method,
+            )
+            for batch in pool.ordered_map(iter_batch(documents, batch_size), **params):
+                yield from self._post_process_onnx_text_output(batch)  # type: ignore
+
+    def onnx_embed_image(self, images: list[ImageInput], **kwargs: Any) -> OnnxOutputContext:
+        with contextlib.ExitStack() as stack:
+            image_files = [
+                stack.enter_context(Image.open(image))
+                if not isinstance(image, Image.Image)
+                else image
+                for image in images
+            ]
+            assert self.processor is not None, "Processor is not initialized"
+            encoded = np.array(self.processor(image_files))
+        onnx_input = {"pixel_values": encoded}
+        onnx_input = self._preprocess_onnx_image_input(onnx_input, **kwargs)
+        model_output = self.model.run(None, onnx_input)  # type: ignore[union-attr]
+        embeddings = model_output[0].reshape(len(images), -1)
+        return OnnxOutputContext(model_output=embeddings)
+
+    def _embed_images(
+        self,
+        model_name: str,
+        cache_dir: str,
+        images: Iterable[ImageInput] | ImageInput,
+        batch_size: int = 256,
+        parallel: int | None = None,
+        providers: Sequence[OnnxProvider] | None = None,
+        cuda: bool | Device = Device.AUTO,
+        device_ids: list[int] | None = None,
+        local_files_only: bool = False,
+        specific_model_path: str | None = None,
+        extra_session_options: dict[str, Any] | None = None,
+        **kwargs: Any,
+    ) -> Iterable[T]:
+        is_small = False
+
+        if isinstance(images, (str, Path, Image.Image)):
+            images = [images]
+            is_small = True
+
+        if isinstance(images, list) and len(images) < batch_size:
+            is_small = True
+
+        if parallel is None or is_small:
+            if not hasattr(self, "model") or self.model is None:
+                self.load_onnx_model()
+
+            for batch in iter_batch(images, batch_size):
+                yield from self._post_process_onnx_image_output(self.onnx_embed_image(batch))
+        else:
+            if parallel == 0:
+                parallel = os.cpu_count()
+
+            start_method = "forkserver" if "forkserver" in get_all_start_methods() else "spawn"
+            params = {
+                "model_name": model_name,
+                "cache_dir": cache_dir,
+                "providers": providers,
+                "local_files_only": local_files_only,
+                "specific_model_path": specific_model_path,
+                **kwargs,
+            }
+
+            if extra_session_options is not None:
+                params.update(extra_session_options)
+
+            pool = ParallelWorkerPool(
+                num_workers=parallel or 1,
+                worker=self._get_image_worker_class(),
+                cuda=cuda,
+                device_ids=device_ids,
+                start_method=start_method,
+            )
+            for batch in pool.ordered_map(iter_batch(images, batch_size), **params):
+                yield from self._post_process_onnx_image_output(batch)  # type: ignore
+
+
+class TextEmbeddingWorker(EmbeddingWorker[T]):
+    def __init__(
+        self,
+        model_name: str,
+        cache_dir: str,
+        **kwargs: Any,
+    ):
+        self.model: OnnxMultimodalModel
+        super().__init__(model_name, cache_dir, **kwargs)
+
+    def init_embedding(
+        self,
+        model_name: str,
+        cache_dir: str,
+        **kwargs: Any,
+    ) -> OnnxMultimodalModel:
+        raise NotImplementedError()
+
+    def process(self, items: Iterable[tuple[int, Any]]) -> Iterable[tuple[int, Any]]:
+        for idx, batch in items:
+            onnx_output = self.model.onnx_embed_text(batch)
+            yield idx, onnx_output
+
+
+class ImageEmbeddingWorker(EmbeddingWorker[T]):
+    def __init__(
+        self,
+        model_name: str,
+        cache_dir: str,
+        **kwargs: Any,
+    ):
+        self.model: OnnxMultimodalModel
+        super().__init__(model_name, cache_dir, **kwargs)
+
+    def init_embedding(
+        self,
+        model_name: str,
+        cache_dir: str,
+        **kwargs: Any,
+    ) -> OnnxMultimodalModel:
+        raise NotImplementedError()
+
+    def process(self, items: Iterable[tuple[int, Any]]) -> Iterable[tuple[int, Any]]:
+        for idx, batch in items:
+            embeddings = self.model.onnx_embed_image(batch)
+            yield idx, embeddings

fastembed/parallel_processor.py

@@ -0,0 +1,253 @@
+import logging
+import os
+from collections import defaultdict
+from copy import deepcopy
+from enum import Enum
+from multiprocessing import Queue, get_context
+from multiprocessing.context import BaseContext
+from multiprocessing.process import BaseProcess
+from multiprocessing.sharedctypes import Synchronized as BaseValue
+from queue import Empty
+from typing import Any, Iterable, Type
+
+from fastembed.common.types import Device
+
+# Single item should be processed in less than:
+processing_timeout = 10 * 60  # seconds
+
+max_internal_batch_size = 200
+
+
+class QueueSignals(str, Enum):
+    stop = "stop"
+    confirm = "confirm"
+    error = "error"
+
+
+class Worker:
+    @classmethod
+    def start(cls, *args: Any, **kwargs: Any) -> "Worker":
+        raise NotImplementedError()
+
+    def process(self, items: Iterable[tuple[int, Any]]) -> Iterable[tuple[int, Any]]:
+        raise NotImplementedError()
+
+
+def _worker(
+    worker_class: Type[Worker],
+    input_queue: Queue,
+    output_queue: Queue,
+    num_active_workers: BaseValue,
+    worker_id: int,
+    kwargs: dict[str, Any] | None = None,
+) -> None:
+    """
+    A worker that pulls data pints off the input queue, and places the execution result on the output queue.
+    When there are no data pints left on the input queue, it decrements
+    num_active_workers to signal completion.
+    """
+
+    if kwargs is None:
+        kwargs = {}
+
+    logging.info(
+        f"Reader worker: {worker_id} PID: {os.getpid()} Device: {kwargs.get('device_id', 'CPU')}"
+    )
+    try:
+        worker = worker_class.start(**kwargs)
+
+        # Keep going until you get an item that's None.
+        def input_queue_iterable() -> Iterable[Any]:
+            while True:
+                item = input_queue.get()
+                if item == QueueSignals.stop:
+                    break
+                yield item
+
+        for processed_item in worker.process(input_queue_iterable()):
+            output_queue.put(processed_item)
+    except Exception as e:  # pylint: disable=broad-except
+        logging.exception(e)
+        output_queue.put(QueueSignals.error)
+    finally:
+        # It's important that we close and join the queue here before
+        # decrementing num_active_workers. Otherwise our parent may join us
+        # before the queue's feeder thread has passed all buffered items to
+        # the underlying pipe resulting in a deadlock.
+        #
+        # See:
+        # https://docs.python.org/3.6/library/multiprocessing.html?highlight=process#pipes-and-queues
+        # https://docs.python.org/3.6/library/multiprocessing.html?highlight=process#programming-guidelines
+        input_queue.close()
+        output_queue.close()
+        input_queue.join_thread()
+        output_queue.join_thread()
+
+        with num_active_workers.get_lock():
+            num_active_workers.value -= 1
+
+        logging.info(f"Reader worker {worker_id} finished")
+
+
+class ParallelWorkerPool:
+    def __init__(
+        self,
+        num_workers: int,
+        worker: Type[Worker],
+        start_method: str | None = None,
+        device_ids: list[int] | None = None,
+        cuda: bool | Device = Device.AUTO,
+    ):
+        self.worker_class = worker
+        self.num_workers = num_workers
+        self.input_queue: Queue | None = None
+        self.output_queue: Queue | None = None
+        self.ctx: BaseContext = get_context(start_method)
+        self.processes: list[BaseProcess] = []
+        self.queue_size = self.num_workers * max_internal_batch_size
+        self.emergency_shutdown = False
+        self.device_ids = device_ids
+        self.cuda = cuda
+        self.num_active_workers: BaseValue | None = None
+
+    def start(self, **kwargs: Any) -> None:
+        self.input_queue = self.ctx.Queue(self.queue_size)
+        self.output_queue = self.ctx.Queue(self.queue_size)
+
+        ctx_value = self.ctx.Value("i", self.num_workers)
+        assert isinstance(ctx_value, BaseValue)
+        self.num_active_workers = ctx_value
+
+        for worker_id in range(0, self.num_workers):
+            worker_kwargs = deepcopy(kwargs)
+            if self.device_ids:
+                device_id = self.device_ids[worker_id % len(self.device_ids)]
+                worker_kwargs["device_id"] = device_id
+                worker_kwargs["cuda"] = self.cuda
+
+            assert hasattr(self.ctx, "Process")
+            process = self.ctx.Process(
+                target=_worker,
+                args=(
+                    self.worker_class,
+                    self.input_queue,
+                    self.output_queue,
+                    self.num_active_workers,
+                    worker_id,
+                    worker_kwargs,
+                ),
+            )
+            process.start()
+            self.processes.append(process)
+
+    def ordered_map(self, stream: Iterable[Any], *args: Any, **kwargs: Any) -> Iterable[Any]:
+        buffer: defaultdict[int, Any] = defaultdict(Any)  # type: ignore
+        next_expected = 0
+
+        for idx, item in self.semi_ordered_map(stream, *args, **kwargs):
+            buffer[idx] = item
+            while next_expected in buffer:
+                yield buffer.pop(next_expected)
+                next_expected += 1
+
+    def semi_ordered_map(
+        self, stream: Iterable[Any], *args: Any, **kwargs: Any
+    ) -> Iterable[tuple[int, Any]]:
+        try:
+            self.start(**kwargs)
+
+            assert self.input_queue is not None, "Input queue was not initialized"
+            assert self.output_queue is not None, "Output queue was not initialized"
+
+            pushed = 0
+            read = 0
+            for idx, item in enumerate(stream):
+                self.check_worker_health()
+                if pushed - read < self.queue_size:
+                    try:
+                        out_item = self.output_queue.get_nowait()
+                    except Empty:
+                        out_item = None
+                else:
+                    try:
+                        out_item = self.output_queue.get(timeout=processing_timeout)
+                    except Empty as e:
+                        self.join_or_terminate()
+                        raise e
+
+                if out_item is not None:
+                    if out_item == QueueSignals.error:
+                        self.join_or_terminate()
+                        raise RuntimeError("Thread unexpectedly terminated")
+                    yield out_item
+                    read += 1
+
+                self.input_queue.put((idx, item))
+                pushed += 1
+
+            for _ in range(self.num_workers):
+                self.input_queue.put(QueueSignals.stop)
+
+            while read < pushed:
+                self.check_worker_health()
+                out_item = self.output_queue.get(timeout=processing_timeout)
+                if out_item == QueueSignals.error:
+                    self.join_or_terminate()
+                    raise RuntimeError("Thread unexpectedly terminated")
+                yield out_item
+                read += 1
+        finally:
+            assert self.input_queue is not None, "Input queue is None"
+            assert self.output_queue is not None, "Output queue is None"
+            self.join()
+            self.input_queue.close()
+            self.output_queue.close()
+            if self.emergency_shutdown:
+                self.input_queue.cancel_join_thread()
+                self.output_queue.cancel_join_thread()
+            else:
+                self.input_queue.join_thread()
+                self.output_queue.join_thread()
+
+    def check_worker_health(self) -> None:
+        """
+        Checks if any worker process has terminated unexpectedly
+        """
+        for process in self.processes:
+            if not process.is_alive() and process.exitcode != 0:
+                self.emergency_shutdown = True
+                self.join_or_terminate()
+                raise RuntimeError(
+                    f"Worker PID: {process.pid} terminated unexpectedly with code {process.exitcode}"
+                )
+
+    def join_or_terminate(self, timeout: int = 1) -> None:
+        """
+        Emergency shutdown
+        @param timeout:
+        @return:
+        """
+        for process in self.processes:
+            process.join(timeout=timeout)
+            if process.is_alive():
+                process.terminate()
+        self.processes.clear()
+
+    def join(self) -> None:
+        for process in self.processes:
+            process.join()
+        self.processes.clear()
+
+    def __del__(self) -> None:
+        """
+        Terminate processes if the user hasn't joined. This is necessary as
+        leaving stray processes running can corrupt shared state. In brief,
+        we've observed shared memory counters being reused (when the memory was
+        free from the perspective of the parent process) while the stray
+        workers still held a reference to them.
+        For a discussion of using destructors in Python in this manner, see
+        https://eli.thegreenplace.net/2009/06/12/safely-using-destructors-in-python/.
+        """
+        for process in self.processes:
+            if process.is_alive():
+                process.terminate()

fastembed/postprocess/__init__.py

@@ -0,0 +1,3 @@
+from fastembed.postprocess.muvera import Muvera
+
+__all__ = ["Muvera"]