PyPI - fairgraph - Versions diffs - 0.13.0__py3-none-any.whl - Mend

fairgraph 0.13.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (267) hide show

fairgraph/__init__.py +61 -0
fairgraph/base.py +104 -0
fairgraph/caching.py +52 -0
fairgraph/client.py +867 -0
fairgraph/collection.py +104 -0
fairgraph/embedded.py +122 -0
fairgraph/errors.py +47 -0
fairgraph/fields.py +11 -0
fairgraph/kgobject.py +1087 -0
fairgraph/kgproxy.py +178 -0
fairgraph/kgquery.py +151 -0
fairgraph/node.py +488 -0
fairgraph/openminds/__init__.py +1 -0
fairgraph/openminds/chemicals/__init__.py +40 -0
fairgraph/openminds/chemicals/amount_of_chemical.py +23 -0
fairgraph/openminds/chemicals/chemical_mixture.py +72 -0
fairgraph/openminds/chemicals/chemical_substance.py +67 -0
fairgraph/openminds/chemicals/product_source.py +57 -0
fairgraph/openminds/computation/__init__.py +53 -0
fairgraph/openminds/computation/data_analysis.py +104 -0
fairgraph/openminds/computation/data_copy.py +104 -0
fairgraph/openminds/computation/environment.py +66 -0
fairgraph/openminds/computation/generic_computation.py +104 -0
fairgraph/openminds/computation/hardware_system.py +53 -0
fairgraph/openminds/computation/launch_configuration.py +68 -0
fairgraph/openminds/computation/local_file.py +83 -0
fairgraph/openminds/computation/model_validation.py +107 -0
fairgraph/openminds/computation/optimization.py +104 -0
fairgraph/openminds/computation/simulation.py +104 -0
fairgraph/openminds/computation/software_agent.py +81 -0
fairgraph/openminds/computation/validation_test.py +105 -0
fairgraph/openminds/computation/validation_test_version.py +180 -0
fairgraph/openminds/computation/visualization.py +104 -0
fairgraph/openminds/computation/workflow_execution.py +44 -0
fairgraph/openminds/computation/workflow_recipe.py +95 -0
fairgraph/openminds/computation/workflow_recipe_version.py +185 -0
fairgraph/openminds/controlled_terms/__init__.py +116 -0
fairgraph/openminds/controlled_terms/action_status_type.py +97 -0
fairgraph/openminds/controlled_terms/age_category.py +89 -0
fairgraph/openminds/controlled_terms/analysis_technique.py +108 -0
fairgraph/openminds/controlled_terms/anatomical_axes_orientation.py +89 -0
fairgraph/openminds/controlled_terms/anatomical_identification_type.py +89 -0
fairgraph/openminds/controlled_terms/anatomical_plane.py +89 -0
fairgraph/openminds/controlled_terms/annotation_criteria_type.py +89 -0
fairgraph/openminds/controlled_terms/annotation_type.py +89 -0
fairgraph/openminds/controlled_terms/atlas_type.py +88 -0
fairgraph/openminds/controlled_terms/auditory_stimulus_type.py +127 -0
fairgraph/openminds/controlled_terms/biological_order.py +117 -0
fairgraph/openminds/controlled_terms/biological_process.py +79 -0
fairgraph/openminds/controlled_terms/biological_sex.py +132 -0
fairgraph/openminds/controlled_terms/breeding_type.py +127 -0
fairgraph/openminds/controlled_terms/cell_culture_type.py +117 -0
fairgraph/openminds/controlled_terms/cell_type.py +151 -0
fairgraph/openminds/controlled_terms/chemical_mixture_type.py +89 -0
fairgraph/openminds/controlled_terms/colormap.py +79 -0
fairgraph/openminds/controlled_terms/contribution_type.py +79 -0
fairgraph/openminds/controlled_terms/cranial_window_construction_type.py +89 -0
fairgraph/openminds/controlled_terms/cranial_window_reinforcement_type.py +89 -0
fairgraph/openminds/controlled_terms/criteria_quality_type.py +89 -0
fairgraph/openminds/controlled_terms/data_type.py +89 -0
fairgraph/openminds/controlled_terms/device_type.py +94 -0
fairgraph/openminds/controlled_terms/difference_measure.py +89 -0
fairgraph/openminds/controlled_terms/disease.py +142 -0
fairgraph/openminds/controlled_terms/disease_model.py +142 -0
fairgraph/openminds/controlled_terms/educational_level.py +79 -0
fairgraph/openminds/controlled_terms/electrical_stimulus_type.py +137 -0
fairgraph/openminds/controlled_terms/ethics_assessment.py +79 -0
fairgraph/openminds/controlled_terms/experimental_approach.py +79 -0
fairgraph/openminds/controlled_terms/file_bundle_grouping.py +99 -0
fairgraph/openminds/controlled_terms/file_repository_type.py +89 -0
fairgraph/openminds/controlled_terms/file_usage_role.py +89 -0
fairgraph/openminds/controlled_terms/genetic_strain_type.py +127 -0
fairgraph/openminds/controlled_terms/gustatory_stimulus_type.py +127 -0
fairgraph/openminds/controlled_terms/handedness.py +127 -0
fairgraph/openminds/controlled_terms/language.py +88 -0
fairgraph/openminds/controlled_terms/laterality.py +94 -0
fairgraph/openminds/controlled_terms/learning_resource_type.py +88 -0
fairgraph/openminds/controlled_terms/measured_quantity.py +89 -0
fairgraph/openminds/controlled_terms/measured_signal_type.py +79 -0
fairgraph/openminds/controlled_terms/meta_data_model_type.py +88 -0
fairgraph/openminds/controlled_terms/model_abstraction_level.py +89 -0
fairgraph/openminds/controlled_terms/model_scope.py +89 -0
fairgraph/openminds/controlled_terms/molecular_entity.py +142 -0
fairgraph/openminds/controlled_terms/mri_pulse_sequence.py +98 -0
fairgraph/openminds/controlled_terms/mri_weighting.py +98 -0
fairgraph/openminds/controlled_terms/olfactory_stimulus_type.py +127 -0
fairgraph/openminds/controlled_terms/operating_device.py +79 -0
fairgraph/openminds/controlled_terms/operating_system.py +88 -0
fairgraph/openminds/controlled_terms/optical_stimulus_type.py +127 -0
fairgraph/openminds/controlled_terms/organ.py +161 -0
fairgraph/openminds/controlled_terms/organism_substance.py +151 -0
fairgraph/openminds/controlled_terms/organism_system.py +117 -0
fairgraph/openminds/controlled_terms/patch_clamp_variation.py +89 -0
fairgraph/openminds/controlled_terms/preparation_type.py +98 -0
fairgraph/openminds/controlled_terms/product_accessibility.py +79 -0
fairgraph/openminds/controlled_terms/programming_language.py +88 -0
fairgraph/openminds/controlled_terms/qualitative_overlap.py +79 -0
fairgraph/openminds/controlled_terms/semantic_data_type.py +79 -0
fairgraph/openminds/controlled_terms/service.py +89 -0
fairgraph/openminds/controlled_terms/setup_type.py +89 -0
fairgraph/openminds/controlled_terms/software_application_category.py +79 -0
fairgraph/openminds/controlled_terms/software_feature.py +79 -0
fairgraph/openminds/controlled_terms/species.py +143 -0
fairgraph/openminds/controlled_terms/stimulation_approach.py +98 -0
fairgraph/openminds/controlled_terms/stimulation_technique.py +98 -0
fairgraph/openminds/controlled_terms/subcellular_entity.py +143 -0
fairgraph/openminds/controlled_terms/subject_attribute.py +89 -0
fairgraph/openminds/controlled_terms/tactile_stimulus_type.py +127 -0
fairgraph/openminds/controlled_terms/technique.py +108 -0
fairgraph/openminds/controlled_terms/term_suggestion.py +121 -0
fairgraph/openminds/controlled_terms/terminology.py +89 -0
fairgraph/openminds/controlled_terms/tissue_sample_attribute.py +89 -0
fairgraph/openminds/controlled_terms/tissue_sample_type.py +127 -0
fairgraph/openminds/controlled_terms/type_of_uncertainty.py +89 -0
fairgraph/openminds/controlled_terms/uberon_parcellation.py +153 -0
fairgraph/openminds/controlled_terms/unit_of_measurement.py +108 -0
fairgraph/openminds/controlled_terms/visual_stimulus_type.py +127 -0
fairgraph/openminds/controlledterms.py +6 -0
fairgraph/openminds/core/__init__.py +107 -0
fairgraph/openminds/core/actors/__init__.py +7 -0
fairgraph/openminds/core/actors/account_information.py +44 -0
fairgraph/openminds/core/actors/affiliation.py +30 -0
fairgraph/openminds/core/actors/consortium.py +175 -0
fairgraph/openminds/core/actors/contact_information.py +43 -0
fairgraph/openminds/core/actors/contribution.py +23 -0
fairgraph/openminds/core/actors/organization.py +199 -0
fairgraph/openminds/core/actors/person.py +236 -0
fairgraph/openminds/core/data/__init__.py +13 -0
fairgraph/openminds/core/data/content_type.py +107 -0
fairgraph/openminds/core/data/content_type_pattern.py +53 -0
fairgraph/openminds/core/data/copyright.py +23 -0
fairgraph/openminds/core/data/file.py +275 -0
fairgraph/openminds/core/data/file_archive.py +71 -0
fairgraph/openminds/core/data/file_bundle.py +150 -0
fairgraph/openminds/core/data/file_path_pattern.py +23 -0
fairgraph/openminds/core/data/file_repository.py +99 -0
fairgraph/openminds/core/data/file_repository_structure.py +51 -0
fairgraph/openminds/core/data/hash.py +23 -0
fairgraph/openminds/core/data/license.py +77 -0
fairgraph/openminds/core/data/measurement.py +45 -0
fairgraph/openminds/core/data/service_link.py +49 -0
fairgraph/openminds/core/digital_identifier/__init__.py +11 -0
fairgraph/openminds/core/digital_identifier/doi.py +98 -0
fairgraph/openminds/core/digital_identifier/gridid.py +41 -0
fairgraph/openminds/core/digital_identifier/handle.py +52 -0
fairgraph/openminds/core/digital_identifier/identifiers_dot_org_id.py +41 -0
fairgraph/openminds/core/digital_identifier/isbn.py +88 -0
fairgraph/openminds/core/digital_identifier/issn.py +63 -0
fairgraph/openminds/core/digital_identifier/orcid.py +41 -0
fairgraph/openminds/core/digital_identifier/rorid.py +41 -0
fairgraph/openminds/core/digital_identifier/rrid.py +55 -0
fairgraph/openminds/core/digital_identifier/stock_number.py +23 -0
fairgraph/openminds/core/digital_identifier/swhid.py +48 -0
fairgraph/openminds/core/miscellaneous/__init__.py +7 -0
fairgraph/openminds/core/miscellaneous/comment.py +47 -0
fairgraph/openminds/core/miscellaneous/funding.py +70 -0
fairgraph/openminds/core/miscellaneous/quantitative_value.py +43 -0
fairgraph/openminds/core/miscellaneous/quantitative_value_array.py +49 -0
fairgraph/openminds/core/miscellaneous/quantitative_value_range.py +43 -0
fairgraph/openminds/core/miscellaneous/research_product_group.py +26 -0
fairgraph/openminds/core/miscellaneous/web_resource.py +104 -0
fairgraph/openminds/core/products/__init__.py +12 -0
fairgraph/openminds/core/products/dataset.py +95 -0
fairgraph/openminds/core/products/dataset_version.py +240 -0
fairgraph/openminds/core/products/meta_data_model.py +95 -0
fairgraph/openminds/core/products/meta_data_model_version.py +168 -0
fairgraph/openminds/core/products/model.py +103 -0
fairgraph/openminds/core/products/model_version.py +235 -0
fairgraph/openminds/core/products/project.py +56 -0
fairgraph/openminds/core/products/setup.py +69 -0
fairgraph/openminds/core/products/software.py +95 -0
fairgraph/openminds/core/products/software_version.py +226 -0
fairgraph/openminds/core/products/web_service.py +103 -0
fairgraph/openminds/core/products/web_service_version.py +182 -0
fairgraph/openminds/core/research/__init__.py +17 -0
fairgraph/openminds/core/research/behavioral_protocol.py +69 -0
fairgraph/openminds/core/research/configuration.py +67 -0
fairgraph/openminds/core/research/custom_property_set.py +27 -0
fairgraph/openminds/core/research/numerical_property.py +23 -0
fairgraph/openminds/core/research/property_value_list.py +71 -0
fairgraph/openminds/core/research/protocol.py +67 -0
fairgraph/openminds/core/research/protocol_execution.py +76 -0
fairgraph/openminds/core/research/strain.py +90 -0
fairgraph/openminds/core/research/string_property.py +23 -0
fairgraph/openminds/core/research/subject.py +79 -0
fairgraph/openminds/core/research/subject_group.py +91 -0
fairgraph/openminds/core/research/subject_group_state.py +113 -0
fairgraph/openminds/core/research/subject_state.py +138 -0
fairgraph/openminds/core/research/tissue_sample.py +87 -0
fairgraph/openminds/core/research/tissue_sample_collection.py +99 -0
fairgraph/openminds/core/research/tissue_sample_collection_state.py +109 -0
fairgraph/openminds/core/research/tissue_sample_state.py +127 -0
fairgraph/openminds/ephys/__init__.py +39 -0
fairgraph/openminds/ephys/activity/__init__.py +3 -0
fairgraph/openminds/ephys/activity/cell_patching.py +73 -0
fairgraph/openminds/ephys/activity/electrode_placement.py +67 -0
fairgraph/openminds/ephys/activity/recording_activity.py +67 -0
fairgraph/openminds/ephys/device/__init__.py +6 -0
fairgraph/openminds/ephys/device/electrode.py +81 -0
fairgraph/openminds/ephys/device/electrode_array.py +85 -0
fairgraph/openminds/ephys/device/electrode_array_usage.py +105 -0
fairgraph/openminds/ephys/device/electrode_usage.py +101 -0
fairgraph/openminds/ephys/device/pipette.py +81 -0
fairgraph/openminds/ephys/device/pipette_usage.py +123 -0
fairgraph/openminds/ephys/entity/__init__.py +2 -0
fairgraph/openminds/ephys/entity/channel.py +23 -0
fairgraph/openminds/ephys/entity/recording.py +63 -0
fairgraph/openminds/publications/__init__.py +47 -0
fairgraph/openminds/publications/book.py +106 -0
fairgraph/openminds/publications/chapter.py +100 -0
fairgraph/openminds/publications/learning_resource.py +90 -0
fairgraph/openminds/publications/live_paper.py +95 -0
fairgraph/openminds/publications/live_paper_resource_item.py +58 -0
fairgraph/openminds/publications/live_paper_section.py +57 -0
fairgraph/openminds/publications/live_paper_version.py +177 -0
fairgraph/openminds/publications/periodical.py +53 -0
fairgraph/openminds/publications/publication_issue.py +44 -0
fairgraph/openminds/publications/publication_volume.py +44 -0
fairgraph/openminds/publications/scholarly_article.py +146 -0
fairgraph/openminds/sands/__init__.py +57 -0
fairgraph/openminds/sands/atlas/__init__.py +9 -0
fairgraph/openminds/sands/atlas/atlas_annotation.py +52 -0
fairgraph/openminds/sands/atlas/brain_atlas.py +113 -0
fairgraph/openminds/sands/atlas/brain_atlas_version.py +213 -0
fairgraph/openminds/sands/atlas/common_coordinate_space.py +121 -0
fairgraph/openminds/sands/atlas/common_coordinate_space_version.py +243 -0
fairgraph/openminds/sands/atlas/parcellation_entity.py +133 -0
fairgraph/openminds/sands/atlas/parcellation_entity_version.py +162 -0
fairgraph/openminds/sands/atlas/parcellation_terminology.py +38 -0
fairgraph/openminds/sands/atlas/parcellation_terminology_version.py +38 -0
fairgraph/openminds/sands/mathematical_shapes/__init__.py +3 -0
fairgraph/openminds/sands/mathematical_shapes/circle.py +23 -0
fairgraph/openminds/sands/mathematical_shapes/ellipse.py +27 -0
fairgraph/openminds/sands/mathematical_shapes/rectangle.py +23 -0
fairgraph/openminds/sands/miscellaneous/__init__.py +6 -0
fairgraph/openminds/sands/miscellaneous/anatomical_target_position.py +40 -0
fairgraph/openminds/sands/miscellaneous/coordinate_point.py +23 -0
fairgraph/openminds/sands/miscellaneous/qualitative_relation_assessment.py +34 -0
fairgraph/openminds/sands/miscellaneous/quantitative_relation_assessment.py +38 -0
fairgraph/openminds/sands/miscellaneous/single_color.py +24 -0
fairgraph/openminds/sands/miscellaneous/viewer_specification.py +40 -0
fairgraph/openminds/sands/non_atlas/__init__.py +3 -0
fairgraph/openminds/sands/non_atlas/custom_anatomical_entity.py +110 -0
fairgraph/openminds/sands/non_atlas/custom_annotation.py +54 -0
fairgraph/openminds/sands/non_atlas/custom_coordinate_space.py +67 -0
fairgraph/openminds/specimen_prep/__init__.py +38 -0
fairgraph/openminds/specimen_prep/activity/__init__.py +3 -0
fairgraph/openminds/specimen_prep/activity/cranial_window_preparation.py +69 -0
fairgraph/openminds/specimen_prep/activity/tissue_culture_preparation.py +67 -0
fairgraph/openminds/specimen_prep/activity/tissue_sample_slicing.py +69 -0
fairgraph/openminds/specimen_prep/device/__init__.py +2 -0
fairgraph/openminds/specimen_prep/device/slicing_device.py +73 -0
fairgraph/openminds/specimen_prep/device/slicing_device_usage.py +117 -0
fairgraph/openminds/specimenprep.py +4 -0
fairgraph/openminds/stimulation/__init__.py +38 -0
fairgraph/openminds/stimulation/activity/__init__.py +1 -0
fairgraph/openminds/stimulation/activity/stimulation_activity.py +67 -0
fairgraph/openminds/stimulation/stimulus/__init__.py +1 -0
fairgraph/openminds/stimulation/stimulus/ephys_stimulus.py +63 -0
fairgraph/queries.py +499 -0
fairgraph/registry.py +123 -0
fairgraph/utility.py +607 -0
fairgraph-0.13.0.dist-info/METADATA +222 -0
fairgraph-0.13.0.dist-info/RECORD +267 -0
fairgraph-0.13.0.dist-info/WHEEL +5 -0
fairgraph-0.13.0.dist-info/licenses/LICENSE.txt +177 -0
fairgraph-0.13.0.dist-info/top_level.txt +1 -0

fairgraph/openminds/controlled_terms/model_scope.py ADDED Viewed

@@ -0,0 +1,89 @@
+"""
+Structured information on the scope of the computational model.
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import ModelScope as OMModelScope
+from fairgraph import KGObject
+from openminds import IRI
+class ModelScope(KGObject, OMModelScope):
+    """
+    Structured information on the scope of the computational model.
+    """
+    type_ = "https://openminds.om-i.org/types/ModelScope"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.DatasetVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+        Property(
+            "is_scope_of",
+            ["openminds.v4.computation.ValidationTest", "openminds.v4.core.Model"],
+            "scope",
+            reverse="scope",
+            multiple=True,
+            description="reverse of 'scope'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        is_scope_of=None,
+        knowledge_space_link=None,
+        preferred_ontology_identifier=None,
+        synonyms=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            is_scope_of=is_scope_of,
+            knowledge_space_link=knowledge_space_link,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            synonyms=synonyms,
+        )

fairgraph/openminds/controlled_terms/molecular_entity.py ADDED Viewed

@@ -0,0 +1,142 @@
+"""
+<description not available>
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import MolecularEntity as OMMolecularEntity
+from fairgraph import KGObject
+from openminds import IRI
+class MolecularEntity(KGObject, OMMolecularEntity):
+    """
+    <description not available>
+    """
+    type_ = "https://openminds.om-i.org/types/MolecularEntity"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "composes",
+            [
+                "openminds.v4.chemicals.ChemicalSubstance",
+                "openminds.v4.ephys.Electrode",
+                "openminds.v4.ephys.ElectrodeArray",
+                "openminds.v4.ephys.Pipette",
+            ],
+            ["insulatorMaterial", "material", "molecularEntity"],
+            reverse=["insulator_material", "material", "molecular_entity"],
+            multiple=True,
+            description="reverse of insulator_material, material, molecular_entity",
+        ),
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+        Property(
+            "is_used_to_group",
+            "openminds.v4.core.FileBundle",
+            "groupedBy",
+            reverse="grouped_by",
+            multiple=True,
+            description="reverse of 'grouped_by'",
+        ),
+        Property(
+            "labels",
+            "openminds.v4.ephys.PipetteUsage",
+            "labelingCompound",
+            reverse="labeling_compound",
+            multiple=True,
+            description="reverse of 'labeling_compound'",
+        ),
+        Property(
+            "studied_in",
+            [
+                "openminds.v4.computation.DataAnalysis",
+                "openminds.v4.computation.DataCopy",
+                "openminds.v4.computation.GenericComputation",
+                "openminds.v4.computation.ModelValidation",
+                "openminds.v4.computation.Optimization",
+                "openminds.v4.computation.Simulation",
+                "openminds.v4.computation.ValidationTest",
+                "openminds.v4.computation.Visualization",
+                "openminds.v4.core.DatasetVersion",
+                "openminds.v4.core.Model",
+                "openminds.v4.core.ProtocolExecution",
+                "openminds.v4.ephys.CellPatching",
+                "openminds.v4.ephys.ElectrodePlacement",
+                "openminds.v4.ephys.RecordingActivity",
+                "openminds.v4.specimen_prep.CranialWindowPreparation",
+                "openminds.v4.specimen_prep.TissueCulturePreparation",
+                "openminds.v4.specimen_prep.TissueSampleSlicing",
+                "openminds.v4.stimulation.StimulationActivity",
+            ],
+            "studyTarget",
+            reverse="study_targets",
+            multiple=True,
+            description="reverse of 'study_targets'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        composes=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        is_used_to_group=None,
+        knowledge_space_link=None,
+        labels=None,
+        preferred_ontology_identifier=None,
+        studied_in=None,
+        synonyms=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            composes=composes,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            is_used_to_group=is_used_to_group,
+            knowledge_space_link=knowledge_space_link,
+            labels=labels,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            studied_in=studied_in,
+            synonyms=synonyms,
+        )

fairgraph/openminds/controlled_terms/mri_pulse_sequence.py ADDED Viewed

@@ -0,0 +1,98 @@
+"""
+<description not available>
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import MRIPulseSequence as OMMRIPulseSequence
+from fairgraph import KGObject
+from openminds import IRI
+class MRIPulseSequence(KGObject, OMMRIPulseSequence):
+    """
+    <description not available>
+    """
+    type_ = "https://openminds.om-i.org/types/MRIPulseSequence"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+        Property(
+            "is_used_to_group",
+            "openminds.v4.core.FileBundle",
+            "groupedBy",
+            reverse="grouped_by",
+            multiple=True,
+            description="reverse of 'grouped_by'",
+        ),
+        Property(
+            "used_in",
+            ["openminds.v4.core.DatasetVersion", "openminds.v4.core.Protocol"],
+            "technique",
+            reverse="techniques",
+            multiple=True,
+            description="reverse of 'techniques'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        is_used_to_group=None,
+        knowledge_space_link=None,
+        preferred_ontology_identifier=None,
+        synonyms=None,
+        used_in=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            is_used_to_group=is_used_to_group,
+            knowledge_space_link=knowledge_space_link,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            synonyms=synonyms,
+            used_in=used_in,
+        )

fairgraph/openminds/controlled_terms/mri_weighting.py ADDED Viewed

@@ -0,0 +1,98 @@
+"""
+<description not available>
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import MRIWeighting as OMMRIWeighting
+from fairgraph import KGObject
+from openminds import IRI
+class MRIWeighting(KGObject, OMMRIWeighting):
+    """
+    <description not available>
+    """
+    type_ = "https://openminds.om-i.org/types/MRIWeighting"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+        Property(
+            "is_used_to_group",
+            "openminds.v4.core.FileBundle",
+            "groupedBy",
+            reverse="grouped_by",
+            multiple=True,
+            description="reverse of 'grouped_by'",
+        ),
+        Property(
+            "used_in",
+            ["openminds.v4.core.DatasetVersion", "openminds.v4.core.Protocol"],
+            "technique",
+            reverse="techniques",
+            multiple=True,
+            description="reverse of 'techniques'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        is_used_to_group=None,
+        knowledge_space_link=None,
+        preferred_ontology_identifier=None,
+        synonyms=None,
+        used_in=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            is_used_to_group=is_used_to_group,
+            knowledge_space_link=knowledge_space_link,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            synonyms=synonyms,
+            used_in=used_in,
+        )

fairgraph/openminds/controlled_terms/olfactory_stimulus_type.py ADDED Viewed

@@ -0,0 +1,127 @@
+"""
+<description not available>
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import OlfactoryStimulusType as OMOlfactoryStimulusType
+from fairgraph import KGObject
+from openminds import IRI
+class OlfactoryStimulusType(KGObject, OMOlfactoryStimulusType):
+    """
+    <description not available>
+    """
+    type_ = "https://openminds.om-i.org/types/OlfactoryStimulusType"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+        Property(
+            "is_used_to_group",
+            "openminds.v4.core.FileBundle",
+            "groupedBy",
+            reverse="grouped_by",
+            multiple=True,
+            description="reverse of 'grouped_by'",
+        ),
+        Property(
+            "studied_in",
+            [
+                "openminds.v4.computation.DataAnalysis",
+                "openminds.v4.computation.DataCopy",
+                "openminds.v4.computation.GenericComputation",
+                "openminds.v4.computation.ModelValidation",
+                "openminds.v4.computation.Optimization",
+                "openminds.v4.computation.Simulation",
+                "openminds.v4.computation.ValidationTest",
+                "openminds.v4.computation.Visualization",
+                "openminds.v4.core.DatasetVersion",
+                "openminds.v4.core.Model",
+                "openminds.v4.core.ProtocolExecution",
+                "openminds.v4.ephys.CellPatching",
+                "openminds.v4.ephys.ElectrodePlacement",
+                "openminds.v4.ephys.RecordingActivity",
+                "openminds.v4.specimen_prep.CranialWindowPreparation",
+                "openminds.v4.specimen_prep.TissueCulturePreparation",
+                "openminds.v4.specimen_prep.TissueSampleSlicing",
+                "openminds.v4.stimulation.StimulationActivity",
+            ],
+            "studyTarget",
+            reverse="study_targets",
+            multiple=True,
+            description="reverse of 'study_targets'",
+        ),
+        Property(
+            "used_in",
+            ["openminds.v4.core.BehavioralProtocol", "openminds.v4.core.Protocol"],
+            "stimulusType",
+            reverse="stimulus_types",
+            multiple=True,
+            description="reverse of 'stimulus_types'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        is_used_to_group=None,
+        knowledge_space_link=None,
+        preferred_ontology_identifier=None,
+        studied_in=None,
+        synonyms=None,
+        used_in=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            is_used_to_group=is_used_to_group,
+            knowledge_space_link=knowledge_space_link,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            studied_in=studied_in,
+            synonyms=synonyms,
+            used_in=used_in,
+        )

fairgraph/openminds/controlled_terms/operating_device.py ADDED Viewed

@@ -0,0 +1,79 @@
+"""
+Structured information on the operating device.
+"""
+# this file was auto-generated
+from openminds.properties import Property
+from openminds.v4.controlled_terms import OperatingDevice as OMOperatingDevice
+from fairgraph import KGObject
+from openminds import IRI
+class OperatingDevice(KGObject, OMOperatingDevice):
+    """
+    Structured information on the operating device.
+    """
+    type_ = "https://openminds.om-i.org/types/OperatingDevice"
+    default_space = "controlled"
+    # forward properties are defined in the parent class (in openMINDS-Python)
+    reverse_properties = [
+        Property(
+            "describes",
+            [
+                "openminds.v4.computation.ValidationTestVersion",
+                "openminds.v4.computation.WorkflowRecipeVersion",
+                "openminds.v4.core.DatasetVersion",
+                "openminds.v4.core.MetaDataModelVersion",
+                "openminds.v4.core.ModelVersion",
+                "openminds.v4.core.SoftwareVersion",
+                "openminds.v4.core.WebServiceVersion",
+                "openminds.v4.publications.Book",
+                "openminds.v4.publications.Chapter",
+                "openminds.v4.publications.LearningResource",
+                "openminds.v4.publications.LivePaperVersion",
+                "openminds.v4.publications.ScholarlyArticle",
+                "openminds.v4.sands.BrainAtlasVersion",
+                "openminds.v4.sands.CommonCoordinateSpaceVersion",
+            ],
+            "keyword",
+            reverse="keywords",
+            multiple=True,
+            description="reverse of 'keywords'",
+        ),
+    ]
+    existence_query_properties = ("name",)
+    def __init__(
+        self,
+        name=None,
+        definition=None,
+        describes=None,
+        description=None,
+        interlex_identifier=None,
+        knowledge_space_link=None,
+        preferred_ontology_identifier=None,
+        synonyms=None,
+        id=None,
+        data=None,
+        space=None,
+        release_status=None,
+    ):
+        return KGObject.__init__(
+            self,
+            id=id,
+            space=space,
+            release_status=release_status,
+            data=data,
+            name=name,
+            definition=definition,
+            describes=describes,
+            description=description,
+            interlex_identifier=interlex_identifier,
+            knowledge_space_link=knowledge_space_link,
+            preferred_ontology_identifier=preferred_ontology_identifier,
+            synonyms=synonyms,
+        )