endoreg-db 0.6.4__py3-none-any.whl → 0.8.2__py3-none-any.whl
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- endoreg_db/admin.py +26 -26
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +12 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +12 -0
- endoreg_db/data/ai_model/data.yaml +1 -1
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +20 -1
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/center/data.yaml +13 -12
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/misc.yaml +1 -2
- endoreg_db/data/endoscopy_processor/data.yaml +3 -0
- endoreg_db/data/event/cardiology.yaml +0 -13
- endoreg_db/data/examination/examinations/data.yaml +14 -9
- endoreg_db/data/examination_indication/endoscopy.yaml +30 -30
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +11 -11
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +3 -46
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_circularity_default.yaml +0 -2
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_nice.yaml +4 -7
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_paris.yaml +0 -8
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_planarity_default.yaml +6 -13
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_surface_intact_default.yaml +3 -6
- endoreg_db/data/{finding_location_classification_choice/colonoscopy.yaml → finding_classification_choice/colonoscopy_location.yaml} +11 -22
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +8 -3
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +6 -6
- endoreg_db/data/finding_type/data.yaml +23 -10
- endoreg_db/data/gender/data.yaml +8 -1
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/misc.yaml +43 -0
- endoreg_db/data/medication/anticoagulation.yaml +5 -5
- endoreg_db/data/medication/tah.yaml +5 -5
- endoreg_db/data/medication_intake_time/base.yaml +4 -4
- endoreg_db/data/names_first/first_names.yaml +3 -0
- endoreg_db/data/pdf_type/data.yaml +26 -2
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +6 -6
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +9 -6
- endoreg_db/data/requirement/disease_hepatology.yaml +1 -1
- endoreg_db/data/requirement/disease_misc.yaml +3 -3
- endoreg_db/data/requirement/disease_renal.yaml +18 -2
- endoreg_db/data/requirement/{colonoscopy_indications.yaml → endoscopy_bleeding_risk.yaml} +6 -3
- endoreg_db/data/requirement/event_cardiology.yaml +17 -17
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +352 -31
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +36 -35
- endoreg_db/data/requirement_operator/model_operators.yaml +13 -7
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +42 -2
- endoreg_db/data/requirement_type/requirement_types.yaml +82 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/unit/concentration.yaml +23 -0
- endoreg_db/exceptions.py +19 -0
- endoreg_db/forms/patient_finding_intervention_form.py +4 -5
- endoreg_db/forms/patient_form.py +7 -6
- endoreg_db/forms/questionnaires/__init__.py +1 -1
- endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +359 -0
- endoreg_db/helpers/download_segmentation_model.py +31 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +422 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +2 -7
- endoreg_db/management/commands/load_base_db_data.py +1 -0
- endoreg_db/management/commands/load_endoscope_data.py +2 -2
- endoreg_db/management/commands/load_examination_indication_data.py +2 -3
- endoreg_db/management/commands/load_finding_data.py +49 -92
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
- endoreg_db/management/commands/load_information_source.py +13 -7
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_requirement_data.py +30 -6
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/register_ai_model.py +1 -1
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/migrations/0001_initial.py +625 -813
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/models/__init__.py +270 -307
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/{ai_model → administration/ai}/__init__.py +6 -1
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/{ai_model → administration/ai}/model_type.py +6 -1
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +3 -3
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +3 -10
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +2 -4
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
- endoreg_db/models/{center → administration/center}/__init__.py +3 -1
- endoreg_db/models/administration/center/center.py +61 -0
- endoreg_db/models/administration/center/center_product.py +64 -0
- endoreg_db/models/{center → administration/center}/center_resource.py +19 -3
- endoreg_db/models/administration/center/center_shift.py +88 -0
- endoreg_db/models/administration/center/center_waste.py +30 -0
- endoreg_db/models/administration/permissions/__init__.py +44 -0
- endoreg_db/models/administration/person/__init__.py +24 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +35 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
- endoreg_db/models/administration/person/employee/employee_type.py +42 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +54 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
- endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
- endoreg_db/models/administration/person/patient/__init__.py +5 -0
- endoreg_db/models/administration/person/patient/patient.py +460 -0
- endoreg_db/models/administration/person/profession/__init__.py +24 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
- endoreg_db/models/administration/product/product.py +97 -0
- endoreg_db/models/administration/product/product_group.py +39 -0
- endoreg_db/models/administration/product/product_material.py +54 -0
- endoreg_db/models/{product → administration/product}/product_weight.py +9 -0
- endoreg_db/models/{product → administration/product}/reference_product.py +26 -11
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +37 -0
- endoreg_db/models/administration/qualification/qualification_type.py +35 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +69 -0
- endoreg_db/models/administration/shift/shift.py +51 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/label/__init__.py +24 -1
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +84 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
- endoreg_db/models/label/label.py +45 -74
- endoreg_db/models/label/label_set.py +53 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
- endoreg_db/models/label/video_segmentation_label.py +31 -0
- endoreg_db/models/{annotation → label}/video_segmentation_labelset.py +7 -0
- endoreg_db/models/media/__init__.py +14 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +111 -0
- endoreg_db/models/media/pdf/__init__.py +11 -0
- endoreg_db/models/media/pdf/raw_pdf.py +608 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
- endoreg_db/models/media/video/__init__.py +4 -0
- endoreg_db/models/media/video/create_from_file.py +336 -0
- endoreg_db/models/media/video/pipe_1.py +207 -0
- endoreg_db/models/media/video/pipe_2.py +105 -0
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file.py +680 -0
- endoreg_db/models/media/video/video_file_ai.py +443 -0
- endoreg_db/models/media/video/video_file_anonymize.py +348 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/media/video/video_file_io.py +166 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
- endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +39 -0
- endoreg_db/models/media/video/video_file_meta/get_fps.py +147 -0
- endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +143 -0
- endoreg_db/models/media/video/video_file_meta/text_meta.py +134 -0
- endoreg_db/models/media/video/video_file_meta/video_meta.py +70 -0
- endoreg_db/models/media/video/video_file_meta.py +11 -0
- endoreg_db/models/media/video/video_file_segments.py +209 -0
- endoreg_db/models/medical/__init__.py +146 -0
- endoreg_db/models/{contraindication → medical/contraindication}/__init__.py +1 -5
- endoreg_db/models/{disease.py → medical/disease.py} +60 -52
- endoreg_db/models/{event.py → medical/event.py} +31 -54
- endoreg_db/models/{examination → medical/examination}/__init__.py +1 -1
- endoreg_db/models/medical/examination/examination.py +148 -0
- endoreg_db/models/{examination → medical/examination}/examination_indication.py +64 -35
- endoreg_db/models/{examination → medical/examination}/examination_time.py +0 -4
- endoreg_db/models/{examination → medical/examination}/examination_time_type.py +1 -8
- endoreg_db/models/{examination → medical/examination}/examination_type.py +1 -7
- endoreg_db/models/medical/finding/__init__.py +18 -0
- endoreg_db/models/medical/finding/finding.py +96 -0
- endoreg_db/models/medical/finding/finding_classification.py +142 -0
- endoreg_db/models/{finding → medical/finding}/finding_intervention.py +2 -10
- endoreg_db/models/medical/finding/finding_type.py +35 -0
- endoreg_db/models/medical/hardware/__init__.py +8 -0
- endoreg_db/models/{hardware → medical/hardware}/endoscope.py +28 -23
- endoreg_db/models/medical/laboratory/__init__.py +5 -0
- endoreg_db/models/medical/laboratory/lab_value.py +419 -0
- endoreg_db/models/{medication → medical/medication}/medication.py +1 -3
- endoreg_db/models/{medication → medical/medication}/medication_indication_type.py +8 -3
- endoreg_db/models/{medication → medical/medication}/medication_intake_time.py +21 -3
- endoreg_db/models/{medication → medical/medication}/medication_schedule.py +13 -5
- endoreg_db/models/{organ → medical/organ}/__init__.py +3 -6
- endoreg_db/models/medical/patient/__init__.py +56 -0
- endoreg_db/models/medical/patient/medication_examples.py +38 -0
- endoreg_db/models/medical/patient/patient_disease.py +63 -0
- endoreg_db/models/medical/patient/patient_event.py +75 -0
- endoreg_db/models/medical/patient/patient_examination.py +249 -0
- endoreg_db/models/{persons → medical}/patient/patient_examination_indication.py +21 -9
- endoreg_db/models/medical/patient/patient_finding.py +357 -0
- endoreg_db/models/medical/patient/patient_finding_classification.py +207 -0
- endoreg_db/models/{patient → medical/patient}/patient_finding_intervention.py +15 -1
- endoreg_db/models/medical/patient/patient_lab_sample.py +148 -0
- endoreg_db/models/{persons → medical}/patient/patient_lab_value.py +40 -15
- endoreg_db/models/medical/patient/patient_medication.py +104 -0
- endoreg_db/models/medical/patient/patient_medication_schedule.py +136 -0
- endoreg_db/models/{risk → medical/risk}/risk_type.py +0 -4
- endoreg_db/models/{data_file/metadata → metadata}/__init__.py +6 -0
- endoreg_db/models/metadata/frame_ocr_result.py +0 -0
- endoreg_db/models/metadata/model_meta.py +193 -0
- endoreg_db/models/metadata/model_meta_logic.py +236 -0
- endoreg_db/models/{data_file/metadata → metadata}/pdf_meta.py +28 -13
- endoreg_db/models/metadata/sensitive_meta.py +288 -0
- endoreg_db/models/metadata/sensitive_meta_logic.py +643 -0
- endoreg_db/models/metadata/video_meta.py +332 -0
- endoreg_db/models/metadata/video_prediction_logic.py +190 -0
- endoreg_db/models/metadata/video_prediction_meta.py +270 -0
- endoreg_db/models/other/__init__.py +17 -0
- endoreg_db/models/other/distribution/date_value_distribution.py +0 -2
- endoreg_db/models/other/distribution/numeric_value_distribution.py +30 -2
- endoreg_db/models/{emission → other/emission}/emission_factor.py +15 -6
- endoreg_db/models/{persons → other}/gender.py +8 -3
- endoreg_db/models/other/information_source.py +159 -0
- endoreg_db/models/other/material.py +10 -2
- endoreg_db/models/other/resource.py +6 -2
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- endoreg_db/models/{rules → rule}/ruleset.py +0 -2
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- endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +0 -19
- endoreg_db/models/data_file/base_classes/utils.py +0 -58
- endoreg_db/models/data_file/frame.py +0 -29
- endoreg_db/models/data_file/import_classes/__init__.py +0 -18
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -254
- endoreg_db/models/data_file/import_classes/raw_video.py +0 -290
- endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -290
- endoreg_db/models/data_file/metadata/video_meta.py +0 -199
- endoreg_db/models/data_file/report_file.py +0 -56
- endoreg_db/models/data_file/video/__init__.py +0 -11
- endoreg_db/models/data_file/video/import_meta.py +0 -25
- endoreg_db/models/data_file/video/video.py +0 -196
- endoreg_db/models/data_file/video_segment.py +0 -214
- endoreg_db/models/examination/examination.py +0 -67
- endoreg_db/models/finding/__init__.py +0 -11
- endoreg_db/models/finding/finding.py +0 -75
- endoreg_db/models/finding/finding_location_classification.py +0 -94
- endoreg_db/models/finding/finding_morphology_classification.py +0 -89
- endoreg_db/models/finding/finding_type.py +0 -22
- endoreg_db/models/hardware/__init__.py +0 -2
- endoreg_db/models/information_source.py +0 -65
- endoreg_db/models/laboratory/__init__.py +0 -1
- endoreg_db/models/laboratory/lab_value.py +0 -162
- endoreg_db/models/logging/__init__.py +0 -11
- endoreg_db/models/logging/agl_service.py +0 -19
- endoreg_db/models/logging/base.py +0 -22
- endoreg_db/models/logging/log_type.py +0 -23
- endoreg_db/models/logging/network_device.py +0 -27
- endoreg_db/models/lx/__init__.py +0 -4
- endoreg_db/models/lx/client.py +0 -57
- endoreg_db/models/lx/identity.py +0 -34
- endoreg_db/models/lx/permission.py +0 -18
- endoreg_db/models/lx/user.py +0 -16
- endoreg_db/models/network/__init__.py +0 -9
- endoreg_db/models/network/agl_service.py +0 -38
- endoreg_db/models/network/network_device.py +0 -58
- endoreg_db/models/network/network_device_type.py +0 -23
- endoreg_db/models/other/distribution.py +0 -5
- endoreg_db/models/patient/__init__.py +0 -24
- endoreg_db/models/patient/patient_examination.py +0 -182
- endoreg_db/models/patient/patient_finding.py +0 -143
- endoreg_db/models/patient/patient_finding_location.py +0 -120
- endoreg_db/models/patient/patient_finding_morphology.py +0 -166
- endoreg_db/models/permissions/__init__.py +0 -44
- endoreg_db/models/persons/__init__.py +0 -34
- endoreg_db/models/persons/examiner/__init__.py +0 -2
- endoreg_db/models/persons/examiner/examiner.py +0 -60
- endoreg_db/models/persons/examiner/examiner_type.py +0 -2
- endoreg_db/models/persons/patient/__init__.py +0 -8
- endoreg_db/models/persons/patient/patient.py +0 -389
- endoreg_db/models/persons/patient/patient_disease.py +0 -22
- endoreg_db/models/persons/patient/patient_event.py +0 -52
- endoreg_db/models/persons/patient/patient_lab_sample.py +0 -108
- endoreg_db/models/persons/patient/patient_medication.py +0 -59
- endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -88
- endoreg_db/models/persons/portal_user_information.py +0 -27
- endoreg_db/models/prediction/__init__.py +0 -8
- endoreg_db/models/prediction/image_classification.py +0 -51
- endoreg_db/models/prediction/video_prediction_meta.py +0 -306
- endoreg_db/models/product/product.py +0 -110
- endoreg_db/models/product/product_group.py +0 -27
- endoreg_db/models/product/product_material.py +0 -28
- endoreg_db/models/questionnaires/__init__.py +0 -114
- endoreg_db/models/quiz/__init__.py +0 -9
- endoreg_db/models/quiz/quiz_answer.py +0 -41
- endoreg_db/models/quiz/quiz_question.py +0 -54
- endoreg_db/models/report_reader/report_reader_config.py +0 -53
- endoreg_db/models/rules/__init__.py +0 -5
- endoreg_db/queries/get/__init__.py +0 -6
- endoreg_db/queries/get/center.py +0 -42
- endoreg_db/queries/get/model.py +0 -13
- endoreg_db/queries/get/patient.py +0 -14
- endoreg_db/queries/get/patient_examination.py +0 -20
- endoreg_db/queries/get/report_file.py +0 -33
- endoreg_db/queries/get/video.py +0 -31
- endoreg_db/serializers/ai_model.py +0 -19
- endoreg_db/serializers/annotation.py +0 -14
- endoreg_db/serializers/center.py +0 -11
- endoreg_db/serializers/examination.py +0 -33
- endoreg_db/serializers/frame.py +0 -9
- endoreg_db/serializers/hardware.py +0 -21
- endoreg_db/serializers/label.py +0 -22
- endoreg_db/serializers/patient.py +0 -33
- endoreg_db/serializers/prediction.py +0 -10
- endoreg_db/serializers/raw_pdf_anony_text_validation.py +0 -137
- endoreg_db/serializers/report_file.py +0 -7
- endoreg_db/serializers/video.py +0 -20
- endoreg_db/serializers/video_segmentation.py +0 -574
- endoreg_db/tests.py +0 -3
- endoreg_db/utils/legacy_ocr.py +0 -201
- endoreg_db/utils/video/transcode_videofile.py +0 -111
- endoreg_db/views/patient_views.py +0 -90
- endoreg_db/views/raw_pdf_anony_text_validation_views.py +0 -95
- endoreg_db/views/raw_pdf_meta_validation_views.py +0 -111
- endoreg_db/views/raw_video_meta_validation_views.py +0 -148
- endoreg_db/views/report_views.py +0 -96
- endoreg_db/views/video_segmentation_views.py +0 -166
- endoreg_db-0.6.4.dist-info/METADATA +0 -161
- endoreg_db-0.6.4.dist-info/RECORD +0 -470
- /endoreg_db/{case_generator/__init__.py → api/serializers/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/annotation.py → api/views/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
- /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
- /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
- /endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +0 -0
- /endoreg_db/models/{persons → administration/person}/person.py +0 -0
- /endoreg_db/models/{product → administration/product}/__init__.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/__init__.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
- /endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +0 -0
- /endoreg_db/models/{medication → medical/medication}/__init__.py +0 -0
- /endoreg_db/models/{medication → medical/medication}/medication_indication.py +0 -0
- /endoreg_db/models/{risk → medical/risk}/__init__.py +0 -0
- /endoreg_db/models/{risk → medical/risk}/risk.py +0 -0
- /endoreg_db/models/{emission → other/emission}/__init__.py +0 -0
- /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/case_generator.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/lab_sample_factory.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/utils.py +0 -0
- /endoreg_db/views/{csrf.py → misc/csrf.py} +0 -0
- {endoreg_db-0.6.4.dist-info → endoreg_db-0.8.2.dist-info}/WHEEL +0 -0
- {endoreg_db-0.6.4.dist-info → endoreg_db-0.8.2.dist-info}/licenses/LICENSE +0 -0
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"""
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Video Correction API Views
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Provides endpoints for video analysis, masking, frame removal, and processing history.
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Created as part of Phase 1.1: Video Correction API Endpoints.
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Available Functions from lx_anonymizer (already implemented):
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- FrameCleaner.analyze_video_sensitivity() - Frame analysis
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- FrameCleaner.clean_video() - Complete anonymization
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- FrameCleaner._mask_video() - FFmpeg masking
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- FrameCleaner.remove_frames_from_video() - Frame removal
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- VideoImportService._get_processor_roi_info() - ROI extraction
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"""
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from rest_framework.views import APIView
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from rest_framework.response import Response
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from rest_framework import status
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from django.shortcuts import get_object_or_404
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from django.conf import settings
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from pathlib import Path
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import json
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import logging
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from endoreg_db.models import VideoFile, VideoMetadata, VideoProcessingHistory, LabelVideoSegment
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from endoreg_db.serializers import VideoMetadataSerializer, VideoProcessingHistorySerializer
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from lx_anonymizer import FrameCleaner
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logger = logging.getLogger(__name__)
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def update_segments_after_frame_removal(video: VideoFile, removed_frames: list) -> dict:
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"""
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Update LabelVideoSegment frame boundaries after frame removal.
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This function shifts segment start/end frames based on which frames were removed.
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Segments are deleted if all their frames are removed.
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Args:
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video: VideoFile instance whose segments should be updated
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removed_frames: List of frame numbers that were removed (sorted)
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Returns:
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dict: {
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'segments_updated': int,
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'segments_deleted': int,
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'segments_unchanged': int
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}
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Algorithm:
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For each segment:
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1. Count frames removed before segment → shift start_frame
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2. Count frames removed within segment → shift end_frame
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3. Delete segment if start_frame >= end_frame (all frames removed)
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Example:
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Original segment: frames 100-200
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Removed frames: [50, 75, 120, 150, 180]
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Frames before segment (< 100): 2 frames (50, 75)
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Frames within segment (100-200): 3 frames (120, 150, 180)
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New segment: frames (100-2) to (200-2-3) = 98-195
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"""
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if not removed_frames:
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return {'segments_updated': 0, 'segments_deleted': 0, 'segments_unchanged': 0}
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removed_frames = sorted(set(removed_frames)) # Ensure sorted and unique
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segments = LabelVideoSegment.objects.filter(video=video).order_by('start_frame')
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segments_updated = 0
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segments_deleted = 0
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segments_unchanged = 0
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for segment in segments:
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# Count frames removed before this segment
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frames_before = sum(1 for f in removed_frames if f < original_start)
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# Count frames removed within this segment
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frames_within = sum(1 for f in removed_frames if original_start <= f <= original_end)
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# Calculate new boundaries
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new_end = original_end - frames_before - frames_within
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# Delete segment if all frames were removed
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logger.info(
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f"Deleting segment {segment.id} (original: {original_start}-{original_end}) "
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f"- all {frames_within} frames removed"
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)
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segment.delete()
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segments_deleted += 1
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elif new_start != original_start or new_end != original_end:
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# Update segment boundaries
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logger.info(
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f"Updating segment {segment.id}: "
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f"{original_start}-{original_end} → {new_start}-{new_end} "
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f"(before: {frames_before}, within: {frames_within})"
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)
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segment.start_frame = new_start
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segment.end_frame = new_end
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segment.save()
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segments_updated += 1
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else:
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# No change needed
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segments_unchanged += 1
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logger.info(
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f"Segment update complete for video {video.id}: "
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f"{segments_updated} updated, {segments_deleted} deleted, {segments_unchanged} unchanged"
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)
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return {
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'segments_updated': segments_updated,
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'segments_deleted': segments_deleted,
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'segments_unchanged': segments_unchanged
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}
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class VideoMetadataView(APIView):
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"""
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GET /api/media/videos/{pk}/metadata/
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Retrieve analysis results for a video.
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Returns:
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{
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"id": 1,
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"video": 123,
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"sensitive_frame_count": 42,
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"sensitive_ratio": 0.05,
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"sensitive_frame_ids": "[10, 15, 20, ...]",
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"sensitive_frame_ids_list": [10, 15, 20, ...],
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"sensitive_percentage": 5.0,
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"has_analysis": true,
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"analyzed_at": "2025-10-09T10:00:00Z"
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}
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"""
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def get(self, request, pk):
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"""Get video metadata by video ID."""
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video = get_object_or_404(VideoFile, pk=pk)
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# Get or create metadata record
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metadata, created = VideoMetadata.objects.get_or_create(video=video)
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serializer = VideoMetadataSerializer(metadata, context={'request': request})
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return Response(serializer.data)
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class VideoProcessingHistoryView(APIView):
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"""
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GET /api/media/videos/{pk}/processing-history/
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Retrieve processing history for a video.
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Returns list of processing operations:
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[
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{
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"id": 1,
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"video": 123,
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"operation": "mask_overlay",
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"operation_display": "Mask Overlay",
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"status": "success",
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"status_display": "Success",
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"config": {"mask_type": "device", "device_name": "olympus"},
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"output_file": "/path/to/masked_video.mp4",
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"download_url": "/api/media/processed-videos/123/1/",
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"details": "",
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"task_id": "abc-123-def",
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"created_at": "2025-10-09T10:00:00Z",
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"completed_at": "2025-10-09T10:05:00Z",
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"duration": 300.5,
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"is_complete": true
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},
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...
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]
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"""
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def get(self, request, pk):
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"""Get processing history for a video."""
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video = get_object_or_404(VideoFile, pk=pk)
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# Get all history records, newest first
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history = VideoProcessingHistory.objects.filter(
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video=video
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).order_by('-created_at')
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serializer = VideoProcessingHistorySerializer(
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history,
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many=True,
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context={'request': request}
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)
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return Response(serializer.data)
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class VideoAnalyzeView(APIView):
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"""
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POST /api/media/videos/{pk}/analyze/
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Analyze video for sensitive frames using MiniCPM-o 2.6 or OCR+LLM.
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Request body (optional):
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{
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"detection_method": "minicpm", // or "ocr_llm", "hybrid"
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"sample_interval": 30 // analyze every Nth frame (default: adaptive)
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}
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Returns:
|
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|
+
{
|
|
213
|
+
"sensitive_frame_count": 42,
|
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214
|
+
"total_frames": 840,
|
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215
|
+
"sensitive_ratio": 0.05,
|
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216
|
+
"sensitive_frame_ids": [10, 15, 20, ...],
|
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217
|
+
"sensitive_percentage": 5.0,
|
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|
+
"detection_method": "minicpm",
|
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|
+
"message": "Analysis complete"
|
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|
+
}
|
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221
|
+
"""
|
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|
+
|
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223
|
+
def post(self, request, pk):
|
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|
+
"""Analyze video for sensitive content."""
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|
+
video = get_object_or_404(VideoFile, pk=pk)
|
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+
|
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227
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# Extract parameters
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228
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+
detection_method = request.data.get('detection_method', 'minicpm')
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+
sample_interval = request.data.get('sample_interval', None)
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|
+
|
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231
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+
try:
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232
|
+
# Initialize FrameCleaner with appropriate detection method
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233
|
+
use_minicpm = detection_method in ['minicpm', 'hybrid']
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234
|
+
frame_cleaner = FrameCleaner(use_minicpm=use_minicpm)
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235
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+
|
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236
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+
# Get video path
|
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237
|
+
video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
|
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238
|
+
|
|
239
|
+
# Run analysis (uses existing FrameCleaner.analyze_video_sensitivity)
|
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240
|
+
analysis_result = frame_cleaner.analyze_video_sensitivity(
|
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|
+
video_path=video_path,
|
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|
+
sample_interval=sample_interval
|
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|
+
)
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244
|
+
|
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245
|
+
# Extract results
|
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246
|
+
sensitive_frame_ids = analysis_result.get('sensitive_frame_ids', [])
|
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247
|
+
total_frames = analysis_result.get('total_frames', 0)
|
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248
|
+
sensitive_count = len(sensitive_frame_ids)
|
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249
|
+
sensitive_ratio = sensitive_count / total_frames if total_frames > 0 else 0.0
|
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250
|
+
|
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251
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+
# Update or create metadata
|
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|
+
metadata, created = VideoMetadata.objects.update_or_create(
|
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|
+
video=video,
|
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254
|
+
defaults={
|
|
255
|
+
'sensitive_frame_count': sensitive_count,
|
|
256
|
+
'sensitive_ratio': sensitive_ratio,
|
|
257
|
+
'sensitive_frame_ids': json.dumps(sensitive_frame_ids)
|
|
258
|
+
}
|
|
259
|
+
)
|
|
260
|
+
|
|
261
|
+
# Create processing history record
|
|
262
|
+
VideoProcessingHistory.objects.create(
|
|
263
|
+
video=video,
|
|
264
|
+
operation=VideoProcessingHistory.OPERATION_ANALYSIS,
|
|
265
|
+
status=VideoProcessingHistory.STATUS_SUCCESS,
|
|
266
|
+
config={
|
|
267
|
+
'detection_method': detection_method,
|
|
268
|
+
'sample_interval': sample_interval
|
|
269
|
+
},
|
|
270
|
+
details=f"Found {sensitive_count} sensitive frames out of {total_frames} total frames"
|
|
271
|
+
)
|
|
272
|
+
|
|
273
|
+
logger.info(f"Video {pk} analyzed: {sensitive_count}/{total_frames} sensitive frames")
|
|
274
|
+
|
|
275
|
+
return Response({
|
|
276
|
+
'sensitive_frame_count': sensitive_count,
|
|
277
|
+
'total_frames': total_frames,
|
|
278
|
+
'sensitive_ratio': sensitive_ratio,
|
|
279
|
+
'sensitive_frame_ids': sensitive_frame_ids,
|
|
280
|
+
'sensitive_percentage': sensitive_ratio * 100,
|
|
281
|
+
'detection_method': detection_method,
|
|
282
|
+
'message': 'Analysis complete'
|
|
283
|
+
})
|
|
284
|
+
|
|
285
|
+
except Exception as e:
|
|
286
|
+
logger.error(f"Video analysis failed for {pk}: {str(e)}", exc_info=True)
|
|
287
|
+
|
|
288
|
+
# Create failure record
|
|
289
|
+
VideoProcessingHistory.objects.create(
|
|
290
|
+
video=video,
|
|
291
|
+
operation=VideoProcessingHistory.OPERATION_ANALYSIS,
|
|
292
|
+
status=VideoProcessingHistory.STATUS_FAILURE,
|
|
293
|
+
config={
|
|
294
|
+
'detection_method': detection_method,
|
|
295
|
+
'sample_interval': sample_interval
|
|
296
|
+
},
|
|
297
|
+
details=str(e)
|
|
298
|
+
)
|
|
299
|
+
|
|
300
|
+
return Response(
|
|
301
|
+
{'error': f'Analysis failed: {str(e)}'},
|
|
302
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
303
|
+
)
|
|
304
|
+
|
|
305
|
+
|
|
306
|
+
class VideoApplyMaskView(APIView):
|
|
307
|
+
"""
|
|
308
|
+
POST /api/media/videos/{pk}/apply-mask/
|
|
309
|
+
|
|
310
|
+
Apply device mask or custom ROI mask to video.
|
|
311
|
+
|
|
312
|
+
Request body:
|
|
313
|
+
{
|
|
314
|
+
"mask_type": "device", // or "custom"
|
|
315
|
+
"device_name": "olympus", // required if mask_type=device
|
|
316
|
+
"roi": { // required if mask_type=custom
|
|
317
|
+
"x": 550,
|
|
318
|
+
"y": 0,
|
|
319
|
+
"width": 1350,
|
|
320
|
+
"height": 1080
|
|
321
|
+
},
|
|
322
|
+
"processing_method": "streaming" // or "direct" (default: streaming)
|
|
323
|
+
}
|
|
324
|
+
|
|
325
|
+
Returns:
|
|
326
|
+
{
|
|
327
|
+
"task_id": "abc-123-def", // Celery task ID (future)
|
|
328
|
+
"output_file": "/path/to/masked_video.mp4",
|
|
329
|
+
"message": "Masking complete",
|
|
330
|
+
"processing_time": 125.5
|
|
331
|
+
}
|
|
332
|
+
|
|
333
|
+
Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
|
|
334
|
+
"""
|
|
335
|
+
|
|
336
|
+
def post(self, request, pk):
|
|
337
|
+
"""Apply masking to video."""
|
|
338
|
+
video = get_object_or_404(VideoFile, pk=pk)
|
|
339
|
+
|
|
340
|
+
# Extract parameters
|
|
341
|
+
mask_type = request.data.get('mask_type', 'device')
|
|
342
|
+
device_name = request.data.get('device_name')
|
|
343
|
+
roi = request.data.get('roi')
|
|
344
|
+
processing_method = request.data.get('processing_method', 'streaming')
|
|
345
|
+
|
|
346
|
+
# Validate required parameters
|
|
347
|
+
if mask_type == 'device' and not device_name:
|
|
348
|
+
return Response(
|
|
349
|
+
{'error': 'device_name required for device mask'},
|
|
350
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
351
|
+
)
|
|
352
|
+
|
|
353
|
+
if mask_type == 'custom' and not roi:
|
|
354
|
+
return Response(
|
|
355
|
+
{'error': 'roi required for custom mask'},
|
|
356
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
357
|
+
)
|
|
358
|
+
|
|
359
|
+
# Create processing history record
|
|
360
|
+
history = VideoProcessingHistory.objects.create(
|
|
361
|
+
video=video,
|
|
362
|
+
operation=VideoProcessingHistory.OPERATION_MASKING,
|
|
363
|
+
status=VideoProcessingHistory.STATUS_PENDING,
|
|
364
|
+
config={
|
|
365
|
+
'mask_type': mask_type,
|
|
366
|
+
'device_name': device_name,
|
|
367
|
+
'roi': roi,
|
|
368
|
+
'processing_method': processing_method
|
|
369
|
+
}
|
|
370
|
+
)
|
|
371
|
+
|
|
372
|
+
try:
|
|
373
|
+
history.mark_running()
|
|
374
|
+
|
|
375
|
+
# Initialize FrameCleaner
|
|
376
|
+
frame_cleaner = FrameCleaner()
|
|
377
|
+
|
|
378
|
+
# Get video paths
|
|
379
|
+
video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
|
|
380
|
+
output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_masked.mp4"
|
|
381
|
+
output_path.parent.mkdir(parents=True, exist_ok=True)
|
|
382
|
+
|
|
383
|
+
# Load or create mask config
|
|
384
|
+
if mask_type == 'device':
|
|
385
|
+
# Load device-specific mask from lx_anonymizer/masks/
|
|
386
|
+
mask_config = frame_cleaner._load_mask(device_name)
|
|
387
|
+
else: # custom
|
|
388
|
+
# Convert ROI to mask config
|
|
389
|
+
mask_config = frame_cleaner._create_mask_config_from_roi(
|
|
390
|
+
endoscope_roi=roi,
|
|
391
|
+
processor_rois=None
|
|
392
|
+
)
|
|
393
|
+
|
|
394
|
+
# Apply mask (uses existing FrameCleaner._mask_video)
|
|
395
|
+
import time
|
|
396
|
+
start_time = time.time()
|
|
397
|
+
|
|
398
|
+
success = frame_cleaner._mask_video(
|
|
399
|
+
input_video=video_path,
|
|
400
|
+
mask_config=mask_config,
|
|
401
|
+
output_video=str(output_path)
|
|
402
|
+
)
|
|
403
|
+
|
|
404
|
+
processing_time = time.time() - start_time
|
|
405
|
+
|
|
406
|
+
if success:
|
|
407
|
+
# Update video record with anonymized file
|
|
408
|
+
video.anonymized_file = f"anonym_videos/{video.uuid}_masked.mp4"
|
|
409
|
+
video.save()
|
|
410
|
+
|
|
411
|
+
# Mark history as success
|
|
412
|
+
history.mark_success(
|
|
413
|
+
output_file=str(output_path),
|
|
414
|
+
details=f"Masking completed in {processing_time:.1f}s"
|
|
415
|
+
)
|
|
416
|
+
|
|
417
|
+
logger.info(f"Video {pk} masked successfully: {output_path}")
|
|
418
|
+
|
|
419
|
+
return Response({
|
|
420
|
+
'task_id': None, # Will be Celery task ID in Phase 1.2
|
|
421
|
+
'output_file': str(output_path),
|
|
422
|
+
'message': 'Masking complete',
|
|
423
|
+
'processing_time': processing_time
|
|
424
|
+
})
|
|
425
|
+
else:
|
|
426
|
+
raise Exception("Masking failed - check FFmpeg logs")
|
|
427
|
+
|
|
428
|
+
except Exception as e:
|
|
429
|
+
logger.error(f"Video masking failed for {pk}: {str(e)}", exc_info=True)
|
|
430
|
+
|
|
431
|
+
history.mark_failure(str(e))
|
|
432
|
+
|
|
433
|
+
return Response(
|
|
434
|
+
{'error': f'Masking failed: {str(e)}'},
|
|
435
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
436
|
+
)
|
|
437
|
+
|
|
438
|
+
|
|
439
|
+
class VideoRemoveFramesView(APIView):
|
|
440
|
+
"""
|
|
441
|
+
POST /api/media/videos/{pk}/remove-frames/
|
|
442
|
+
|
|
443
|
+
Remove specified frames from video.
|
|
444
|
+
|
|
445
|
+
Request body:
|
|
446
|
+
{
|
|
447
|
+
"frame_list": [10, 15, 20, 30], // explicit frame numbers
|
|
448
|
+
// OR
|
|
449
|
+
"frame_ranges": "10-20,30,45-50", // range string
|
|
450
|
+
// OR
|
|
451
|
+
"detection_method": "automatic", // use analysis results
|
|
452
|
+
|
|
453
|
+
"processing_method": "streaming" // or "traditional"
|
|
454
|
+
}
|
|
455
|
+
|
|
456
|
+
Returns:
|
|
457
|
+
{
|
|
458
|
+
"task_id": "abc-123-def",
|
|
459
|
+
"output_file": "/path/to/cleaned_video.mp4",
|
|
460
|
+
"frames_removed": 42,
|
|
461
|
+
"message": "Frame removal complete",
|
|
462
|
+
"processing_time": 180.3
|
|
463
|
+
}
|
|
464
|
+
|
|
465
|
+
Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
|
|
466
|
+
"""
|
|
467
|
+
|
|
468
|
+
def post(self, request, pk):
|
|
469
|
+
"""Remove frames from video."""
|
|
470
|
+
video = get_object_or_404(VideoFile, pk=pk)
|
|
471
|
+
|
|
472
|
+
# Extract parameters
|
|
473
|
+
frame_list = request.data.get('frame_list')
|
|
474
|
+
frame_ranges = request.data.get('frame_ranges')
|
|
475
|
+
detection_method = request.data.get('detection_method')
|
|
476
|
+
processing_method = request.data.get('processing_method', 'streaming')
|
|
477
|
+
|
|
478
|
+
# Determine frames to remove
|
|
479
|
+
frames_to_remove = []
|
|
480
|
+
|
|
481
|
+
if frame_list:
|
|
482
|
+
frames_to_remove = frame_list
|
|
483
|
+
elif frame_ranges:
|
|
484
|
+
frames_to_remove = self._parse_frame_ranges(frame_ranges)
|
|
485
|
+
elif detection_method == 'automatic':
|
|
486
|
+
# Use existing analysis results
|
|
487
|
+
try:
|
|
488
|
+
metadata = VideoMetadata.objects.get(video=video)
|
|
489
|
+
if metadata.sensitive_frame_ids:
|
|
490
|
+
frames_to_remove = json.loads(metadata.sensitive_frame_ids)
|
|
491
|
+
else:
|
|
492
|
+
return Response(
|
|
493
|
+
{'error': 'No analysis results available. Run analysis first.'},
|
|
494
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
495
|
+
)
|
|
496
|
+
except VideoMetadata.DoesNotExist:
|
|
497
|
+
return Response(
|
|
498
|
+
{'error': 'Video not analyzed. Run analysis first.'},
|
|
499
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
500
|
+
)
|
|
501
|
+
else:
|
|
502
|
+
return Response(
|
|
503
|
+
{'error': 'Must provide frame_list, frame_ranges, or detection_method=automatic'},
|
|
504
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
505
|
+
)
|
|
506
|
+
|
|
507
|
+
if not frames_to_remove:
|
|
508
|
+
return Response(
|
|
509
|
+
{'error': 'No frames to remove'},
|
|
510
|
+
status=status.HTTP_400_BAD_REQUEST
|
|
511
|
+
)
|
|
512
|
+
|
|
513
|
+
# Create processing history record
|
|
514
|
+
history = VideoProcessingHistory.objects.create(
|
|
515
|
+
video=video,
|
|
516
|
+
operation=VideoProcessingHistory.OPERATION_FRAME_REMOVAL,
|
|
517
|
+
status=VideoProcessingHistory.STATUS_PENDING,
|
|
518
|
+
config={
|
|
519
|
+
'frames_to_remove': frames_to_remove,
|
|
520
|
+
'frame_count': len(frames_to_remove),
|
|
521
|
+
'processing_method': processing_method
|
|
522
|
+
}
|
|
523
|
+
)
|
|
524
|
+
|
|
525
|
+
try:
|
|
526
|
+
history.mark_running()
|
|
527
|
+
|
|
528
|
+
# Initialize FrameCleaner
|
|
529
|
+
frame_cleaner = FrameCleaner()
|
|
530
|
+
|
|
531
|
+
# Get video paths
|
|
532
|
+
video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
|
|
533
|
+
output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_cleaned.mp4"
|
|
534
|
+
output_path.parent.mkdir(parents=True, exist_ok=True)
|
|
535
|
+
|
|
536
|
+
# Remove frames (uses existing FrameCleaner.remove_frames_from_video)
|
|
537
|
+
import time
|
|
538
|
+
start_time = time.time()
|
|
539
|
+
|
|
540
|
+
success = frame_cleaner.remove_frames_from_video(
|
|
541
|
+
original_video=video_path,
|
|
542
|
+
frames_to_remove=frames_to_remove,
|
|
543
|
+
output_video=str(output_path)
|
|
544
|
+
)
|
|
545
|
+
|
|
546
|
+
processing_time = time.time() - start_time
|
|
547
|
+
|
|
548
|
+
if success:
|
|
549
|
+
# Update video record
|
|
550
|
+
video.anonymized_file = f"anonym_videos/{video.uuid}_cleaned.mp4"
|
|
551
|
+
video.save()
|
|
552
|
+
|
|
553
|
+
# Phase 1.4: Update LabelVideoSegments (shift frame numbers)
|
|
554
|
+
segment_update_result = update_segments_after_frame_removal(video, frames_to_remove)
|
|
555
|
+
|
|
556
|
+
# Mark history as success with segment update info
|
|
557
|
+
details_parts = [
|
|
558
|
+
f"Removed {len(frames_to_remove)} frames in {processing_time:.1f}s"
|
|
559
|
+
]
|
|
560
|
+
if segment_update_result['segments_updated'] > 0:
|
|
561
|
+
details_parts.append(
|
|
562
|
+
f"Updated {segment_update_result['segments_updated']} segments"
|
|
563
|
+
)
|
|
564
|
+
if segment_update_result['segments_deleted'] > 0:
|
|
565
|
+
details_parts.append(
|
|
566
|
+
f"Deleted {segment_update_result['segments_deleted']} segments (all frames removed)"
|
|
567
|
+
)
|
|
568
|
+
|
|
569
|
+
history.mark_success(
|
|
570
|
+
output_file=str(output_path),
|
|
571
|
+
details="; ".join(details_parts)
|
|
572
|
+
)
|
|
573
|
+
|
|
574
|
+
logger.info(f"Video {pk} cleaned: removed {len(frames_to_remove)} frames")
|
|
575
|
+
|
|
576
|
+
return Response({
|
|
577
|
+
'task_id': None, # Will be Celery task ID in Phase 1.2
|
|
578
|
+
'output_file': str(output_path),
|
|
579
|
+
'frames_removed': len(frames_to_remove),
|
|
580
|
+
'segment_updates': segment_update_result,
|
|
581
|
+
'message': 'Frame removal complete',
|
|
582
|
+
'processing_time': processing_time
|
|
583
|
+
})
|
|
584
|
+
else:
|
|
585
|
+
raise Exception("Frame removal failed - check FFmpeg logs")
|
|
586
|
+
|
|
587
|
+
except Exception as e:
|
|
588
|
+
logger.error(f"Frame removal failed for {pk}: {str(e)}", exc_info=True)
|
|
589
|
+
|
|
590
|
+
history.mark_failure(str(e))
|
|
591
|
+
|
|
592
|
+
return Response(
|
|
593
|
+
{'error': f'Frame removal failed: {str(e)}'},
|
|
594
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
595
|
+
)
|
|
596
|
+
|
|
597
|
+
def _parse_frame_ranges(self, ranges_str: str) -> list:
|
|
598
|
+
"""
|
|
599
|
+
Parse frame ranges string to list of frame numbers.
|
|
600
|
+
|
|
601
|
+
Example: "10-20,30,45-50" -> [10,11,...,20,30,45,...,50]
|
|
602
|
+
"""
|
|
603
|
+
frames = []
|
|
604
|
+
for part in ranges_str.split(','):
|
|
605
|
+
part = part.strip()
|
|
606
|
+
if '-' in part:
|
|
607
|
+
start, end = map(int, part.split('-'))
|
|
608
|
+
frames.extend(range(start, end + 1))
|
|
609
|
+
else:
|
|
610
|
+
frames.append(int(part))
|
|
611
|
+
return sorted(set(frames)) # Remove duplicates and sort
|
|
612
|
+
|
|
613
|
+
|
|
614
|
+
class VideoReprocessView(APIView):
|
|
615
|
+
"""
|
|
616
|
+
POST /api/media/videos/{pk}/reprocess/
|
|
617
|
+
|
|
618
|
+
Re-run entire anonymization pipeline for a video.
|
|
619
|
+
|
|
620
|
+
Request body: {} (empty)
|
|
621
|
+
|
|
622
|
+
Returns:
|
|
623
|
+
{
|
|
624
|
+
"message": "Reprocessing started",
|
|
625
|
+
"status": "processing_anonymization"
|
|
626
|
+
}
|
|
627
|
+
|
|
628
|
+
Note: This resets VideoState and triggers video_import service.
|
|
629
|
+
"""
|
|
630
|
+
|
|
631
|
+
def post(self, request, pk):
|
|
632
|
+
"""Reprocess video through entire anonymization pipeline."""
|
|
633
|
+
video = get_object_or_404(VideoFile, pk=pk)
|
|
634
|
+
|
|
635
|
+
try:
|
|
636
|
+
# Create processing history record
|
|
637
|
+
history = VideoProcessingHistory.objects.create(
|
|
638
|
+
video=video,
|
|
639
|
+
operation=VideoProcessingHistory.OPERATION_REPROCESSING,
|
|
640
|
+
status=VideoProcessingHistory.STATUS_PENDING,
|
|
641
|
+
config={}
|
|
642
|
+
)
|
|
643
|
+
|
|
644
|
+
# Reset video state to trigger re-processing
|
|
645
|
+
if hasattr(video, 'state') and video.state:
|
|
646
|
+
video.state.anonymization_status = 'processing_anonymization'
|
|
647
|
+
video.state.save()
|
|
648
|
+
|
|
649
|
+
# Clear previous metadata
|
|
650
|
+
VideoMetadata.objects.filter(video=video).delete()
|
|
651
|
+
|
|
652
|
+
# TODO Phase 1.2: Trigger Celery task for async reprocessing
|
|
653
|
+
# task = reprocess_video_task.delay(video.id)
|
|
654
|
+
# history.task_id = task.id
|
|
655
|
+
# history.save()
|
|
656
|
+
|
|
657
|
+
history.mark_success(details="Reprocessing initiated")
|
|
658
|
+
|
|
659
|
+
logger.info(f"Video {pk} reprocessing started")
|
|
660
|
+
|
|
661
|
+
return Response({
|
|
662
|
+
'message': 'Reprocessing started',
|
|
663
|
+
'status': 'processing_anonymization'
|
|
664
|
+
})
|
|
665
|
+
|
|
666
|
+
except Exception as e:
|
|
667
|
+
logger.error(f"Reprocessing failed for {pk}: {str(e)}", exc_info=True)
|
|
668
|
+
|
|
669
|
+
return Response(
|
|
670
|
+
{'error': f'Reprocessing failed: {str(e)}'},
|
|
671
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
672
|
+
)
|