endoreg-db 0.6.4__py3-none-any.whl → 0.8.2__py3-none-any.whl

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  1. endoreg_db/admin.py +26 -26
  2. endoreg_db/api_urls.py +4 -0
  3. endoreg_db/apps.py +12 -0
  4. endoreg_db/assets/dummy_model.ckpt +1 -0
  5. endoreg_db/codemods/readme.md +88 -0
  6. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  7. endoreg_db/config/env.py +101 -0
  8. endoreg_db/data/__init__.py +12 -0
  9. endoreg_db/data/ai_model/data.yaml +1 -1
  10. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  11. endoreg_db/data/ai_model_label/label-set/data.yaml +20 -1
  12. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  13. endoreg_db/data/center/data.yaml +13 -12
  14. endoreg_db/data/center_shift/ukw.yaml +9 -0
  15. endoreg_db/data/db_summary.csv +58 -0
  16. endoreg_db/data/db_summary.xlsx +0 -0
  17. endoreg_db/data/disease/misc.yaml +1 -2
  18. endoreg_db/data/endoscopy_processor/data.yaml +3 -0
  19. endoreg_db/data/event/cardiology.yaml +0 -13
  20. endoreg_db/data/examination/examinations/data.yaml +14 -9
  21. endoreg_db/data/examination_indication/endoscopy.yaml +30 -30
  22. endoreg_db/data/examination_indication_classification/endoscopy.yaml +11 -11
  23. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  24. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  25. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  26. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  27. endoreg_db/data/finding/complication.yaml +16 -0
  28. endoreg_db/data/finding/data.yaml +3 -46
  29. endoreg_db/data/finding/examination_setting.yaml +16 -0
  30. endoreg_db/data/finding/medication_related.yaml +18 -0
  31. endoreg_db/data/finding/outcome.yaml +12 -0
  32. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  33. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  34. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  35. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  36. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  37. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  38. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  39. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  40. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  41. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  42. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  43. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  44. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  45. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  46. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  47. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  48. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  49. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  50. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  51. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  52. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_circularity_default.yaml +0 -2
  53. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  54. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  55. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  56. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_nice.yaml +4 -7
  57. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_paris.yaml +0 -8
  58. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_planarity_default.yaml +6 -13
  59. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  60. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_surface_intact_default.yaml +3 -6
  61. endoreg_db/data/{finding_location_classification_choice/colonoscopy.yaml → finding_classification_choice/colonoscopy_location.yaml} +11 -22
  62. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  63. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  64. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  65. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  66. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  67. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  68. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  69. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  70. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  71. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  72. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +8 -3
  73. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +6 -6
  74. endoreg_db/data/finding_type/data.yaml +23 -10
  75. endoreg_db/data/gender/data.yaml +8 -1
  76. endoreg_db/data/information_source/annotation.yaml +6 -0
  77. endoreg_db/data/information_source/prediction.yaml +7 -0
  78. endoreg_db/data/information_source_type/data.yaml +8 -0
  79. endoreg_db/data/lab_value/misc.yaml +43 -0
  80. endoreg_db/data/medication/anticoagulation.yaml +5 -5
  81. endoreg_db/data/medication/tah.yaml +5 -5
  82. endoreg_db/data/medication_intake_time/base.yaml +4 -4
  83. endoreg_db/data/names_first/first_names.yaml +3 -0
  84. endoreg_db/data/pdf_type/data.yaml +26 -2
  85. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  86. endoreg_db/data/qualification/m2.yaml +39 -0
  87. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  88. endoreg_db/data/qualification/sonography.yaml +36 -0
  89. endoreg_db/data/qualification_type/base.yaml +29 -0
  90. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  91. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
  92. endoreg_db/data/requirement/age.yaml +26 -0
  93. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  94. endoreg_db/data/requirement/disease_cardiovascular.yaml +6 -6
  95. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +9 -6
  96. endoreg_db/data/requirement/disease_hepatology.yaml +1 -1
  97. endoreg_db/data/requirement/disease_misc.yaml +3 -3
  98. endoreg_db/data/requirement/disease_renal.yaml +18 -2
  99. endoreg_db/data/requirement/{colonoscopy_indications.yaml → endoscopy_bleeding_risk.yaml} +6 -3
  100. endoreg_db/data/requirement/event_cardiology.yaml +17 -17
  101. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  102. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  103. endoreg_db/data/requirement/gender.yaml +25 -0
  104. endoreg_db/data/requirement/lab_value.yaml +352 -31
  105. endoreg_db/data/requirement/medication.yaml +93 -0
  106. endoreg_db/data/requirement_operator/age.yaml +13 -0
  107. endoreg_db/data/requirement_operator/lab_operators.yaml +36 -35
  108. endoreg_db/data/requirement_operator/model_operators.yaml +13 -7
  109. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  110. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  111. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +42 -2
  112. endoreg_db/data/requirement_type/requirement_types.yaml +82 -0
  113. endoreg_db/data/shift/endoscopy.yaml +21 -0
  114. endoreg_db/data/shift_type/base.yaml +35 -0
  115. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  116. endoreg_db/data/unit/concentration.yaml +23 -0
  117. endoreg_db/exceptions.py +19 -0
  118. endoreg_db/forms/patient_finding_intervention_form.py +4 -5
  119. endoreg_db/forms/patient_form.py +7 -6
  120. endoreg_db/forms/questionnaires/__init__.py +1 -1
  121. endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
  122. endoreg_db/helpers/count_db.py +45 -0
  123. endoreg_db/helpers/data_loader.py +208 -0
  124. endoreg_db/helpers/default_objects.py +359 -0
  125. endoreg_db/helpers/download_segmentation_model.py +31 -0
  126. endoreg_db/helpers/interact.py +6 -0
  127. endoreg_db/helpers/test_video_helper.py +119 -0
  128. endoreg_db/logger_conf.py +140 -0
  129. endoreg_db/management/__init__.py +1 -0
  130. endoreg_db/management/commands/__init__.py +1 -0
  131. endoreg_db/management/commands/anonymize_video.py +0 -0
  132. endoreg_db/management/commands/check_auth.py +125 -0
  133. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  134. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  135. endoreg_db/management/commands/fix_video_paths.py +165 -0
  136. endoreg_db/management/commands/import_fallback_video.py +203 -0
  137. endoreg_db/management/commands/import_report.py +298 -0
  138. endoreg_db/management/commands/import_video.py +422 -0
  139. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  140. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  141. endoreg_db/management/commands/load_ai_model_data.py +2 -7
  142. endoreg_db/management/commands/load_base_db_data.py +1 -0
  143. endoreg_db/management/commands/load_endoscope_data.py +2 -2
  144. endoreg_db/management/commands/load_examination_indication_data.py +2 -3
  145. endoreg_db/management/commands/load_finding_data.py +49 -92
  146. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
  147. endoreg_db/management/commands/load_information_source.py +13 -7
  148. endoreg_db/management/commands/load_name_data.py +37 -0
  149. endoreg_db/management/commands/load_qualification_data.py +59 -0
  150. endoreg_db/management/commands/load_requirement_data.py +30 -6
  151. endoreg_db/management/commands/load_shift_data.py +60 -0
  152. endoreg_db/management/commands/load_tag_data.py +57 -0
  153. endoreg_db/management/commands/register_ai_model.py +1 -1
  154. endoreg_db/management/commands/start_filewatcher.py +106 -0
  155. endoreg_db/management/commands/storage_management.py +548 -0
  156. endoreg_db/management/commands/summarize_db_content.py +189 -0
  157. endoreg_db/management/commands/validate_video.py +204 -0
  158. endoreg_db/management/commands/validate_video_files.py +161 -0
  159. endoreg_db/management/commands/video_validation.py +22 -0
  160. endoreg_db/migrations/0001_initial.py +625 -813
  161. endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
  162. endoreg_db/models/__init__.py +270 -307
  163. endoreg_db/models/administration/__init__.py +116 -0
  164. endoreg_db/models/{ai_model → administration/ai}/__init__.py +6 -1
  165. endoreg_db/models/administration/ai/active_model.py +35 -0
  166. endoreg_db/models/administration/ai/ai_model.py +156 -0
  167. endoreg_db/models/{ai_model → administration/ai}/model_type.py +6 -1
  168. endoreg_db/models/administration/case/__init__.py +19 -0
  169. endoreg_db/models/administration/case/case.py +114 -0
  170. endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +3 -3
  171. endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +3 -10
  172. endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +2 -4
  173. endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
  174. endoreg_db/models/{center → administration/center}/__init__.py +3 -1
  175. endoreg_db/models/administration/center/center.py +61 -0
  176. endoreg_db/models/administration/center/center_product.py +64 -0
  177. endoreg_db/models/{center → administration/center}/center_resource.py +19 -3
  178. endoreg_db/models/administration/center/center_shift.py +88 -0
  179. endoreg_db/models/administration/center/center_waste.py +30 -0
  180. endoreg_db/models/administration/permissions/__init__.py +44 -0
  181. endoreg_db/models/administration/person/__init__.py +24 -0
  182. endoreg_db/models/administration/person/employee/__init__.py +3 -0
  183. endoreg_db/models/administration/person/employee/employee.py +35 -0
  184. endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
  185. endoreg_db/models/administration/person/employee/employee_type.py +42 -0
  186. endoreg_db/models/administration/person/examiner/__init__.py +4 -0
  187. endoreg_db/models/administration/person/examiner/examiner.py +54 -0
  188. endoreg_db/models/administration/person/names/__init__.py +0 -0
  189. endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
  190. endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
  191. endoreg_db/models/administration/person/patient/__init__.py +5 -0
  192. endoreg_db/models/administration/person/patient/patient.py +460 -0
  193. endoreg_db/models/administration/person/profession/__init__.py +24 -0
  194. endoreg_db/models/administration/person/user/__init__.py +5 -0
  195. endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
  196. endoreg_db/models/administration/product/product.py +97 -0
  197. endoreg_db/models/administration/product/product_group.py +39 -0
  198. endoreg_db/models/administration/product/product_material.py +54 -0
  199. endoreg_db/models/{product → administration/product}/product_weight.py +9 -0
  200. endoreg_db/models/{product → administration/product}/reference_product.py +26 -11
  201. endoreg_db/models/administration/qualification/__init__.py +7 -0
  202. endoreg_db/models/administration/qualification/qualification.py +37 -0
  203. endoreg_db/models/administration/qualification/qualification_type.py +35 -0
  204. endoreg_db/models/administration/shift/__init__.py +9 -0
  205. endoreg_db/models/administration/shift/scheduled_days.py +69 -0
  206. endoreg_db/models/administration/shift/shift.py +51 -0
  207. endoreg_db/models/administration/shift/shift_type.py +108 -0
  208. endoreg_db/models/label/__init__.py +24 -1
  209. endoreg_db/models/label/annotation/__init__.py +12 -0
  210. endoreg_db/models/label/annotation/image_classification.py +84 -0
  211. endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
  212. endoreg_db/models/label/label.py +45 -74
  213. endoreg_db/models/label/label_set.py +53 -0
  214. endoreg_db/models/label/label_type.py +29 -0
  215. endoreg_db/models/label/label_video_segment/__init__.py +3 -0
  216. endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
  217. endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
  218. endoreg_db/models/label/video_segmentation_label.py +31 -0
  219. endoreg_db/models/{annotation → label}/video_segmentation_labelset.py +7 -0
  220. endoreg_db/models/media/__init__.py +14 -0
  221. endoreg_db/models/media/frame/__init__.py +3 -0
  222. endoreg_db/models/media/frame/frame.py +111 -0
  223. endoreg_db/models/media/pdf/__init__.py +11 -0
  224. endoreg_db/models/media/pdf/raw_pdf.py +608 -0
  225. endoreg_db/models/media/pdf/report_file.py +162 -0
  226. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
  227. endoreg_db/models/media/video/__init__.py +4 -0
  228. endoreg_db/models/media/video/create_from_file.py +336 -0
  229. endoreg_db/models/media/video/pipe_1.py +207 -0
  230. endoreg_db/models/media/video/pipe_2.py +105 -0
  231. endoreg_db/models/media/video/refactor_plan.md +0 -0
  232. endoreg_db/models/media/video/video_file.py +680 -0
  233. endoreg_db/models/media/video/video_file_ai.py +443 -0
  234. endoreg_db/models/media/video/video_file_anonymize.py +348 -0
  235. endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
  236. endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
  237. endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
  238. endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
  239. endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
  240. endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
  241. endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
  242. endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
  243. endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
  244. endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
  245. endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
  246. endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
  247. endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +129 -0
  248. endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
  249. endoreg_db/models/media/video/video_file_frames.py +0 -0
  250. endoreg_db/models/media/video/video_file_io.py +166 -0
  251. endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
  252. endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
  253. endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +39 -0
  254. endoreg_db/models/media/video/video_file_meta/get_fps.py +147 -0
  255. endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +143 -0
  256. endoreg_db/models/media/video/video_file_meta/text_meta.py +134 -0
  257. endoreg_db/models/media/video/video_file_meta/video_meta.py +70 -0
  258. endoreg_db/models/media/video/video_file_meta.py +11 -0
  259. endoreg_db/models/media/video/video_file_segments.py +209 -0
  260. endoreg_db/models/medical/__init__.py +146 -0
  261. endoreg_db/models/{contraindication → medical/contraindication}/__init__.py +1 -5
  262. endoreg_db/models/{disease.py → medical/disease.py} +60 -52
  263. endoreg_db/models/{event.py → medical/event.py} +31 -54
  264. endoreg_db/models/{examination → medical/examination}/__init__.py +1 -1
  265. endoreg_db/models/medical/examination/examination.py +148 -0
  266. endoreg_db/models/{examination → medical/examination}/examination_indication.py +64 -35
  267. endoreg_db/models/{examination → medical/examination}/examination_time.py +0 -4
  268. endoreg_db/models/{examination → medical/examination}/examination_time_type.py +1 -8
  269. endoreg_db/models/{examination → medical/examination}/examination_type.py +1 -7
  270. endoreg_db/models/medical/finding/__init__.py +18 -0
  271. endoreg_db/models/medical/finding/finding.py +96 -0
  272. endoreg_db/models/medical/finding/finding_classification.py +142 -0
  273. endoreg_db/models/{finding → medical/finding}/finding_intervention.py +2 -10
  274. endoreg_db/models/medical/finding/finding_type.py +35 -0
  275. endoreg_db/models/medical/hardware/__init__.py +8 -0
  276. endoreg_db/models/{hardware → medical/hardware}/endoscope.py +28 -23
  277. endoreg_db/models/medical/laboratory/__init__.py +5 -0
  278. endoreg_db/models/medical/laboratory/lab_value.py +419 -0
  279. endoreg_db/models/{medication → medical/medication}/medication.py +1 -3
  280. endoreg_db/models/{medication → medical/medication}/medication_indication_type.py +8 -3
  281. endoreg_db/models/{medication → medical/medication}/medication_intake_time.py +21 -3
  282. endoreg_db/models/{medication → medical/medication}/medication_schedule.py +13 -5
  283. endoreg_db/models/{organ → medical/organ}/__init__.py +3 -6
  284. endoreg_db/models/medical/patient/__init__.py +56 -0
  285. endoreg_db/models/medical/patient/medication_examples.py +38 -0
  286. endoreg_db/models/medical/patient/patient_disease.py +63 -0
  287. endoreg_db/models/medical/patient/patient_event.py +75 -0
  288. endoreg_db/models/medical/patient/patient_examination.py +249 -0
  289. endoreg_db/models/{persons → medical}/patient/patient_examination_indication.py +21 -9
  290. endoreg_db/models/medical/patient/patient_finding.py +357 -0
  291. endoreg_db/models/medical/patient/patient_finding_classification.py +207 -0
  292. endoreg_db/models/{patient → medical/patient}/patient_finding_intervention.py +15 -1
  293. endoreg_db/models/medical/patient/patient_lab_sample.py +148 -0
  294. endoreg_db/models/{persons → medical}/patient/patient_lab_value.py +40 -15
  295. endoreg_db/models/medical/patient/patient_medication.py +104 -0
  296. endoreg_db/models/medical/patient/patient_medication_schedule.py +136 -0
  297. endoreg_db/models/{risk → medical/risk}/risk_type.py +0 -4
  298. endoreg_db/models/{data_file/metadata → metadata}/__init__.py +6 -0
  299. endoreg_db/models/metadata/frame_ocr_result.py +0 -0
  300. endoreg_db/models/metadata/model_meta.py +193 -0
  301. endoreg_db/models/metadata/model_meta_logic.py +236 -0
  302. endoreg_db/models/{data_file/metadata → metadata}/pdf_meta.py +28 -13
  303. endoreg_db/models/metadata/sensitive_meta.py +288 -0
  304. endoreg_db/models/metadata/sensitive_meta_logic.py +643 -0
  305. endoreg_db/models/metadata/video_meta.py +332 -0
  306. endoreg_db/models/metadata/video_prediction_logic.py +190 -0
  307. endoreg_db/models/metadata/video_prediction_meta.py +270 -0
  308. endoreg_db/models/other/__init__.py +17 -0
  309. endoreg_db/models/other/distribution/date_value_distribution.py +0 -2
  310. endoreg_db/models/other/distribution/numeric_value_distribution.py +30 -2
  311. endoreg_db/models/{emission → other/emission}/emission_factor.py +15 -6
  312. endoreg_db/models/{persons → other}/gender.py +8 -3
  313. endoreg_db/models/other/information_source.py +159 -0
  314. endoreg_db/models/other/material.py +10 -2
  315. endoreg_db/models/other/resource.py +6 -2
  316. endoreg_db/models/other/tag.py +27 -0
  317. endoreg_db/models/other/transport_route.py +13 -2
  318. endoreg_db/models/{unit.py → other/unit.py} +16 -6
  319. endoreg_db/models/other/waste.py +10 -3
  320. endoreg_db/models/requirement/requirement.py +556 -114
  321. endoreg_db/models/requirement/requirement_evaluation/__init__.py +4 -132
  322. endoreg_db/models/requirement/requirement_evaluation/get_values.py +40 -0
  323. endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +9 -0
  324. endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +80 -87
  325. endoreg_db/models/requirement/requirement_operator.py +132 -14
  326. endoreg_db/models/requirement/requirement_set.py +181 -21
  327. endoreg_db/models/rule/__init__.py +13 -0
  328. endoreg_db/models/{rules → rule}/rule.py +6 -3
  329. endoreg_db/models/{rules → rule}/rule_attribute_dtype.py +0 -2
  330. endoreg_db/models/{rules → rule}/rule_type.py +0 -2
  331. endoreg_db/models/{rules → rule}/ruleset.py +0 -2
  332. endoreg_db/models/state/__init__.py +12 -0
  333. endoreg_db/models/state/abstract.py +11 -0
  334. endoreg_db/models/state/audit_ledger.py +150 -0
  335. endoreg_db/models/state/label_video_segment.py +22 -0
  336. endoreg_db/models/state/raw_pdf.py +187 -0
  337. endoreg_db/models/state/sensitive_meta.py +46 -0
  338. endoreg_db/models/state/video.py +232 -0
  339. endoreg_db/models/upload_job.py +99 -0
  340. endoreg_db/models/utils.py +135 -0
  341. endoreg_db/models/video_metadata.py +66 -0
  342. endoreg_db/models/video_processing.py +153 -0
  343. endoreg_db/renames.yml +8 -0
  344. endoreg_db/root_urls.py +9 -0
  345. endoreg_db/schemas/__init__.py +0 -0
  346. endoreg_db/schemas/examination_evaluation.py +27 -0
  347. endoreg_db/serializers/Frames_NICE_and_PARIS_classifications.py +775 -0
  348. endoreg_db/serializers/__init__.py +147 -10
  349. endoreg_db/serializers/{raw_pdf_meta_validation.py → _old/raw_pdf_meta_validation.py} +3 -3
  350. endoreg_db/serializers/{raw_video_meta_validation.py → _old/raw_video_meta_validation.py} +18 -14
  351. endoreg_db/serializers/_old/video.py +71 -0
  352. endoreg_db/serializers/administration/__init__.py +14 -0
  353. endoreg_db/serializers/administration/ai/__init__.py +10 -0
  354. endoreg_db/serializers/administration/ai/active_model.py +10 -0
  355. endoreg_db/serializers/administration/ai/ai_model.py +18 -0
  356. endoreg_db/serializers/administration/ai/model_type.py +10 -0
  357. endoreg_db/serializers/administration/center.py +9 -0
  358. endoreg_db/serializers/administration/gender.py +9 -0
  359. endoreg_db/serializers/anonymization.py +69 -0
  360. endoreg_db/serializers/evaluation/examination_evaluation.py +1 -0
  361. endoreg_db/serializers/examination/__init__.py +10 -0
  362. endoreg_db/serializers/examination/base.py +46 -0
  363. endoreg_db/serializers/examination/dropdown.py +21 -0
  364. endoreg_db/serializers/examination_serializer.py +12 -0
  365. endoreg_db/serializers/finding/__init__.py +5 -0
  366. endoreg_db/serializers/finding/finding.py +54 -0
  367. endoreg_db/serializers/finding_classification/__init__.py +7 -0
  368. endoreg_db/serializers/finding_classification/choice.py +19 -0
  369. endoreg_db/serializers/finding_classification/classification.py +13 -0
  370. endoreg_db/serializers/label/__init__.py +7 -0
  371. endoreg_db/serializers/label/image_classification_annotation.py +62 -0
  372. endoreg_db/serializers/label/label.py +15 -0
  373. endoreg_db/serializers/label_video_segment/__init__.py +7 -0
  374. endoreg_db/serializers/label_video_segment/_lvs_create.py +149 -0
  375. endoreg_db/serializers/label_video_segment/_lvs_update.py +138 -0
  376. endoreg_db/serializers/label_video_segment/_lvs_validate.py +149 -0
  377. endoreg_db/serializers/label_video_segment/label_video_segment.py +344 -0
  378. endoreg_db/serializers/label_video_segment/label_video_segment_annotation.py +99 -0
  379. endoreg_db/serializers/label_video_segment/label_video_segment_update.py +163 -0
  380. endoreg_db/serializers/meta/__init__.py +19 -0
  381. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +115 -0
  382. endoreg_db/serializers/meta/report_meta.py +53 -0
  383. endoreg_db/serializers/meta/sensitive_meta_detail.py +162 -0
  384. endoreg_db/serializers/meta/sensitive_meta_update.py +148 -0
  385. endoreg_db/serializers/meta/sensitive_meta_verification.py +59 -0
  386. endoreg_db/serializers/meta/video_meta.py +39 -0
  387. endoreg_db/serializers/misc/__init__.py +14 -0
  388. endoreg_db/serializers/misc/file_overview.py +152 -0
  389. endoreg_db/serializers/misc/stats.py +33 -0
  390. endoreg_db/serializers/misc/translatable_field_mix_in.py +44 -0
  391. endoreg_db/serializers/misc/upload_job.py +71 -0
  392. endoreg_db/serializers/misc/vop_patient_data.py +120 -0
  393. endoreg_db/serializers/patient/__init__.py +11 -0
  394. endoreg_db/serializers/patient/patient.py +86 -0
  395. endoreg_db/serializers/patient/patient_dropdown.py +27 -0
  396. endoreg_db/serializers/patient_examination/__init__.py +7 -0
  397. endoreg_db/serializers/patient_examination/patient_examination.py +141 -0
  398. endoreg_db/serializers/patient_finding/__init__.py +15 -0
  399. endoreg_db/serializers/patient_finding/patient_finding.py +31 -0
  400. endoreg_db/serializers/patient_finding/patient_finding_classification.py +39 -0
  401. endoreg_db/serializers/patient_finding/patient_finding_detail.py +53 -0
  402. endoreg_db/serializers/patient_finding/patient_finding_intervention.py +26 -0
  403. endoreg_db/serializers/patient_finding/patient_finding_list.py +41 -0
  404. endoreg_db/serializers/patient_finding/patient_finding_write.py +126 -0
  405. endoreg_db/serializers/pdf/__init__.py +5 -0
  406. endoreg_db/serializers/pdf/anony_text_validation.py +85 -0
  407. endoreg_db/serializers/report/__init__.py +9 -0
  408. endoreg_db/serializers/report/mixins.py +45 -0
  409. endoreg_db/serializers/report/report.py +105 -0
  410. endoreg_db/serializers/report/report_list.py +22 -0
  411. endoreg_db/serializers/report/secure_file_url.py +26 -0
  412. endoreg_db/serializers/requirements/requirement_schema.py +25 -0
  413. endoreg_db/serializers/requirements/requirement_sets.py +29 -0
  414. endoreg_db/serializers/sensitive_meta_serializer.py +282 -0
  415. endoreg_db/serializers/video/__init__.py +7 -0
  416. endoreg_db/serializers/video/segmentation.py +263 -0
  417. endoreg_db/serializers/video/video_file_brief.py +10 -0
  418. endoreg_db/serializers/video/video_file_detail.py +83 -0
  419. endoreg_db/serializers/video/video_file_list.py +67 -0
  420. endoreg_db/serializers/video/video_metadata.py +105 -0
  421. endoreg_db/serializers/video/video_processing_history.py +153 -0
  422. endoreg_db/services/__init__.py +5 -0
  423. endoreg_db/services/anonymization.py +223 -0
  424. endoreg_db/services/examination_evaluation.py +149 -0
  425. endoreg_db/services/finding_description_service.py +0 -0
  426. endoreg_db/services/lookup_service.py +241 -0
  427. endoreg_db/services/lookup_store.py +122 -0
  428. endoreg_db/services/ollama_api_docs.py +1528 -0
  429. endoreg_db/services/pdf_import.py +963 -0
  430. endoreg_db/services/polling_coordinator.py +288 -0
  431. endoreg_db/services/pseudonym_service.py +89 -0
  432. endoreg_db/services/requirements_object.py +147 -0
  433. endoreg_db/services/segment_sync.py +155 -0
  434. endoreg_db/services/storage_aware_video_processor.py +344 -0
  435. endoreg_db/services/video_import.py +1118 -0
  436. endoreg_db/tasks/upload_tasks.py +207 -0
  437. endoreg_db/tasks/video_ingest.py +157 -0
  438. endoreg_db/tasks/video_processing_tasks.py +327 -0
  439. endoreg_db/urls/__init__.py +70 -0
  440. endoreg_db/urls/anonymization.py +32 -0
  441. endoreg_db/urls/auth.py +16 -0
  442. endoreg_db/urls/classification.py +39 -0
  443. endoreg_db/urls/examination.py +54 -0
  444. endoreg_db/urls/files.py +6 -0
  445. endoreg_db/urls/label_video_segment_validate.py +33 -0
  446. endoreg_db/urls/label_video_segments.py +44 -0
  447. endoreg_db/urls/media.py +229 -0
  448. endoreg_db/urls/patient.py +19 -0
  449. endoreg_db/urls/report.py +48 -0
  450. endoreg_db/urls/requirements.py +13 -0
  451. endoreg_db/urls/stats.py +46 -0
  452. endoreg_db/urls/upload.py +20 -0
  453. endoreg_db/urls/video.py +61 -0
  454. endoreg_db/urls.py +6 -283
  455. endoreg_db/utils/__init__.py +66 -57
  456. endoreg_db/utils/ai/__init__.py +9 -0
  457. endoreg_db/{models/ai_model/utils.py → utils/ai/get.py} +1 -4
  458. endoreg_db/{models/ai_model/lightning → utils/ai}/inference_dataset.py +0 -1
  459. endoreg_db/{models/ai_model/lightning → utils/ai}/multilabel_classification_net.py +14 -10
  460. endoreg_db/{models/ai_model/lightning → utils/ai}/postprocess.py +15 -5
  461. endoreg_db/utils/ai/predict.py +291 -0
  462. endoreg_db/{models/ai_model/lightning → utils/ai}/preprocess.py +1 -1
  463. endoreg_db/utils/calc_duration_seconds.py +24 -0
  464. endoreg_db/utils/case_generator/__init__.py +0 -0
  465. endoreg_db/utils/check_video_files.py +148 -0
  466. endoreg_db/utils/dataloader.py +50 -12
  467. endoreg_db/utils/dates.py +21 -0
  468. endoreg_db/utils/env.py +33 -0
  469. endoreg_db/utils/extract_specific_frames.py +72 -0
  470. endoreg_db/utils/file_operations.py +29 -1
  471. endoreg_db/utils/fix_video_path_direct.py +141 -0
  472. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  473. endoreg_db/utils/links/__init__.py +0 -0
  474. endoreg_db/utils/links/requirement_link.py +193 -0
  475. endoreg_db/utils/mime_types.py +0 -0
  476. endoreg_db/utils/names.py +2 -0
  477. endoreg_db/utils/paths.py +100 -82
  478. endoreg_db/utils/permissions.py +143 -0
  479. endoreg_db/utils/pipelines/Readme.md +235 -0
  480. endoreg_db/utils/pipelines/__init__.py +0 -0
  481. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  482. endoreg_db/utils/product/__init__.py +0 -0
  483. endoreg_db/utils/product/sum_emissions.py +20 -0
  484. endoreg_db/utils/product/sum_weights.py +18 -0
  485. endoreg_db/utils/pydantic_models/db_config.py +1 -1
  486. endoreg_db/utils/requirement_helpers.py +0 -0
  487. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  488. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  489. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  490. endoreg_db/utils/translation.py +27 -0
  491. endoreg_db/utils/validate_video_detailed.py +357 -0
  492. endoreg_db/utils/video/__init__.py +19 -6
  493. endoreg_db/utils/video/extract_frames.py +37 -70
  494. endoreg_db/utils/video/ffmpeg_wrapper.py +772 -0
  495. endoreg_db/utils/video/names.py +42 -0
  496. endoreg_db/utils/video/streaming_processor.py +312 -0
  497. endoreg_db/utils/video/video_splitter.py +94 -0
  498. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  499. endoreg_db/views/__init__.py +282 -2
  500. endoreg_db/views/anonymization/__init__.py +27 -0
  501. endoreg_db/views/anonymization/media_management.py +454 -0
  502. endoreg_db/views/anonymization/overview.py +216 -0
  503. endoreg_db/views/anonymization/validate.py +66 -0
  504. endoreg_db/views/auth/__init__.py +13 -0
  505. endoreg_db/views/{views.py → auth/keycloak.py} +19 -13
  506. endoreg_db/views/examination/__init__.py +33 -0
  507. endoreg_db/views/examination/examination.py +37 -0
  508. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  509. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  510. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  511. endoreg_db/views/examination/get_findings.py +41 -0
  512. endoreg_db/views/examination/get_instruments.py +18 -0
  513. endoreg_db/views/examination/get_interventions.py +14 -0
  514. endoreg_db/views/finding/__init__.py +9 -0
  515. endoreg_db/views/finding/finding.py +112 -0
  516. endoreg_db/views/finding/get_classifications.py +14 -0
  517. endoreg_db/views/finding/get_interventions.py +17 -0
  518. endoreg_db/views/finding_classification/__init__.py +13 -0
  519. endoreg_db/views/finding_classification/base.py +0 -0
  520. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  521. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  522. endoreg_db/views/label/__init__.py +5 -0
  523. endoreg_db/views/label/label.py +15 -0
  524. endoreg_db/views/label_video_segment/__init__.py +16 -0
  525. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  526. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  527. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  528. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  529. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  530. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  531. endoreg_db/views/label_video_segment/validate.py +226 -0
  532. endoreg_db/views/media/__init__.py +45 -0
  533. endoreg_db/views/media/pdf_media.py +386 -0
  534. endoreg_db/views/media/segments.py +71 -0
  535. endoreg_db/views/media/sensitive_metadata.py +314 -0
  536. endoreg_db/views/media/video_media.py +272 -0
  537. endoreg_db/views/media/video_segments.py +596 -0
  538. endoreg_db/views/meta/__init__.py +15 -0
  539. endoreg_db/views/meta/available_files_list.py +146 -0
  540. endoreg_db/views/meta/report_meta.py +53 -0
  541. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  542. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  543. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  544. endoreg_db/views/misc/__init__.py +63 -0
  545. endoreg_db/views/misc/center.py +13 -0
  546. endoreg_db/views/misc/gender.py +14 -0
  547. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  548. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  549. endoreg_db/views/misc/secure_url_validate.py +79 -0
  550. endoreg_db/views/misc/stats.py +220 -0
  551. endoreg_db/views/misc/translation.py +182 -0
  552. endoreg_db/views/misc/upload_views.py +240 -0
  553. endoreg_db/views/patient/__init__.py +5 -0
  554. endoreg_db/views/patient/patient.py +210 -0
  555. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  556. endoreg_db/views/patient_examination/__init__.py +11 -0
  557. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  558. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  559. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  560. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  561. endoreg_db/views/patient_examination/video.py +194 -0
  562. endoreg_db/views/patient_finding/__init__.py +7 -0
  563. endoreg_db/views/patient_finding/base.py +0 -0
  564. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  565. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  566. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  567. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  568. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  569. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  570. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  571. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  572. endoreg_db/views/pdf/__init__.py +11 -0
  573. endoreg_db/views/pdf/pdf_media.py +239 -0
  574. endoreg_db/views/pdf/pdf_stream_views.py +127 -0
  575. endoreg_db/views/pdf/reimport.py +161 -0
  576. endoreg_db/views/report/__init__.py +9 -0
  577. endoreg_db/views/report/report_list.py +112 -0
  578. endoreg_db/views/report/report_with_secure_url.py +28 -0
  579. endoreg_db/views/report/start_examination.py +7 -0
  580. endoreg_db/views/requirement/__init__.py +10 -0
  581. endoreg_db/views/requirement/evaluate.py +279 -0
  582. endoreg_db/views/requirement/lookup.py +483 -0
  583. endoreg_db/views/requirement/lookup_store.py +252 -0
  584. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  585. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  586. endoreg_db/views/stats/__init__.py +13 -0
  587. endoreg_db/views/stats/stats_views.py +229 -0
  588. endoreg_db/views/video/__init__.py +64 -0
  589. endoreg_db/views/video/correction.py +672 -0
  590. endoreg_db/views/video/reimport.py +195 -0
  591. endoreg_db/views/video/segmentation.py +274 -0
  592. endoreg_db/views/video/task_status.py +49 -0
  593. endoreg_db/views/{views_for_timeline.py → video/timeline.py} +3 -3
  594. endoreg_db/views/video/video_analyze.py +52 -0
  595. endoreg_db/views/video/video_apply_mask.py +48 -0
  596. endoreg_db/views/video/video_correction.py +21 -0
  597. endoreg_db/views/video/video_download_processed.py +58 -0
  598. endoreg_db/views/video/video_examination_viewset.py +329 -0
  599. endoreg_db/views/video/video_media.py +158 -0
  600. endoreg_db/views/video/video_meta.py +29 -0
  601. endoreg_db/views/video/video_processing_history.py +24 -0
  602. endoreg_db/views/video/video_remove_frames.py +48 -0
  603. endoreg_db/views/video/video_reprocess.py +40 -0
  604. endoreg_db/views/video/video_stream.py +306 -0
  605. endoreg_db-0.8.2.dist-info/METADATA +384 -0
  606. endoreg_db-0.8.2.dist-info/RECORD +790 -0
  607. endoreg_db/data/agl_service/data.yaml +0 -19
  608. endoreg_db/data/finding_location_classification/colonoscopy.yaml +0 -46
  609. endoreg_db/data/finding_morphology_classification/colonoscopy.yaml +0 -48
  610. endoreg_db/data/finding_morphology_classification_choice/colonoscopy_size.yaml +0 -57
  611. endoreg_db/management/commands/_load_model_template.py +0 -41
  612. endoreg_db/management/commands/delete_all.py +0 -18
  613. endoreg_db/management/commands/fetch_legacy_image_dataset.py +0 -32
  614. endoreg_db/management/commands/fix_auth_permission.py +0 -20
  615. endoreg_db/management/commands/load_active_model_data.py +0 -45
  616. endoreg_db/management/commands/load_g_play_data.py +0 -113
  617. endoreg_db/management/commands/load_logging_data.py +0 -39
  618. endoreg_db/management/commands/load_lx_data.py +0 -64
  619. endoreg_db/management/commands/load_medication_indication_data.py +0 -63
  620. endoreg_db/management/commands/load_medication_indication_type_data.py +0 -41
  621. endoreg_db/management/commands/load_medication_intake_time_data.py +0 -41
  622. endoreg_db/management/commands/load_medication_schedule_data.py +0 -55
  623. endoreg_db/management/commands/load_network_data.py +0 -57
  624. endoreg_db/migrations/0002_alter_frame_image_alter_rawframe_image.py +0 -23
  625. endoreg_db/migrations/0003_alter_frame_image_alter_rawframe_image.py +0 -23
  626. endoreg_db/migrations/0004_alter_rawvideofile_file_alter_video_file.py +0 -25
  627. endoreg_db/migrations/0005_rawvideofile_frame_count_and_more.py +0 -33
  628. endoreg_db/migrations/0006_frame_extracted_rawframe_extracted.py +0 -23
  629. endoreg_db/migrations/0007_rename_pseudo_patient_video_patient_and_more.py +0 -24
  630. endoreg_db/migrations/0008_remove_reportfile_patient_examination_and_more.py +0 -48
  631. endoreg_db/migrations/0009_requirementoperator_requirementsettype_and_more.py +0 -154
  632. endoreg_db/models/ai_model/active_model.py +0 -9
  633. endoreg_db/models/ai_model/ai_model.py +0 -90
  634. endoreg_db/models/ai_model/lightning/__init__.py +0 -3
  635. endoreg_db/models/ai_model/lightning/predict.py +0 -172
  636. endoreg_db/models/ai_model/lightning/prediction_visualizer.py +0 -55
  637. endoreg_db/models/ai_model/lightning/run_visualizer.py +0 -21
  638. endoreg_db/models/ai_model/model_meta.py +0 -240
  639. endoreg_db/models/annotation/__init__.py +0 -32
  640. endoreg_db/models/annotation/anonymized_image_annotation.py +0 -115
  641. endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -117
  642. endoreg_db/models/annotation/image_classification.py +0 -86
  643. endoreg_db/models/annotation/video_segmentation_annotation.py +0 -52
  644. endoreg_db/models/case/__init__.py +0 -1
  645. endoreg_db/models/case/case.py +0 -34
  646. endoreg_db/models/center/center.py +0 -51
  647. endoreg_db/models/center/center_product.py +0 -33
  648. endoreg_db/models/center/center_waste.py +0 -16
  649. endoreg_db/models/data_file/__init__.py +0 -39
  650. endoreg_db/models/data_file/base_classes/__init__.py +0 -7
  651. endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -98
  652. endoreg_db/models/data_file/base_classes/abstract_pdf.py +0 -127
  653. endoreg_db/models/data_file/base_classes/abstract_video.py +0 -806
  654. endoreg_db/models/data_file/base_classes/frame_helpers.py +0 -17
  655. endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +0 -19
  656. endoreg_db/models/data_file/base_classes/utils.py +0 -58
  657. endoreg_db/models/data_file/frame.py +0 -29
  658. endoreg_db/models/data_file/import_classes/__init__.py +0 -18
  659. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
  660. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
  661. endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
  662. endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -254
  663. endoreg_db/models/data_file/import_classes/raw_video.py +0 -290
  664. endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -290
  665. endoreg_db/models/data_file/metadata/video_meta.py +0 -199
  666. endoreg_db/models/data_file/report_file.py +0 -56
  667. endoreg_db/models/data_file/video/__init__.py +0 -11
  668. endoreg_db/models/data_file/video/import_meta.py +0 -25
  669. endoreg_db/models/data_file/video/video.py +0 -196
  670. endoreg_db/models/data_file/video_segment.py +0 -214
  671. endoreg_db/models/examination/examination.py +0 -67
  672. endoreg_db/models/finding/__init__.py +0 -11
  673. endoreg_db/models/finding/finding.py +0 -75
  674. endoreg_db/models/finding/finding_location_classification.py +0 -94
  675. endoreg_db/models/finding/finding_morphology_classification.py +0 -89
  676. endoreg_db/models/finding/finding_type.py +0 -22
  677. endoreg_db/models/hardware/__init__.py +0 -2
  678. endoreg_db/models/information_source.py +0 -65
  679. endoreg_db/models/laboratory/__init__.py +0 -1
  680. endoreg_db/models/laboratory/lab_value.py +0 -162
  681. endoreg_db/models/logging/__init__.py +0 -11
  682. endoreg_db/models/logging/agl_service.py +0 -19
  683. endoreg_db/models/logging/base.py +0 -22
  684. endoreg_db/models/logging/log_type.py +0 -23
  685. endoreg_db/models/logging/network_device.py +0 -27
  686. endoreg_db/models/lx/__init__.py +0 -4
  687. endoreg_db/models/lx/client.py +0 -57
  688. endoreg_db/models/lx/identity.py +0 -34
  689. endoreg_db/models/lx/permission.py +0 -18
  690. endoreg_db/models/lx/user.py +0 -16
  691. endoreg_db/models/network/__init__.py +0 -9
  692. endoreg_db/models/network/agl_service.py +0 -38
  693. endoreg_db/models/network/network_device.py +0 -58
  694. endoreg_db/models/network/network_device_type.py +0 -23
  695. endoreg_db/models/other/distribution.py +0 -5
  696. endoreg_db/models/patient/__init__.py +0 -24
  697. endoreg_db/models/patient/patient_examination.py +0 -182
  698. endoreg_db/models/patient/patient_finding.py +0 -143
  699. endoreg_db/models/patient/patient_finding_location.py +0 -120
  700. endoreg_db/models/patient/patient_finding_morphology.py +0 -166
  701. endoreg_db/models/permissions/__init__.py +0 -44
  702. endoreg_db/models/persons/__init__.py +0 -34
  703. endoreg_db/models/persons/examiner/__init__.py +0 -2
  704. endoreg_db/models/persons/examiner/examiner.py +0 -60
  705. endoreg_db/models/persons/examiner/examiner_type.py +0 -2
  706. endoreg_db/models/persons/patient/__init__.py +0 -8
  707. endoreg_db/models/persons/patient/patient.py +0 -389
  708. endoreg_db/models/persons/patient/patient_disease.py +0 -22
  709. endoreg_db/models/persons/patient/patient_event.py +0 -52
  710. endoreg_db/models/persons/patient/patient_lab_sample.py +0 -108
  711. endoreg_db/models/persons/patient/patient_medication.py +0 -59
  712. endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -88
  713. endoreg_db/models/persons/portal_user_information.py +0 -27
  714. endoreg_db/models/prediction/__init__.py +0 -8
  715. endoreg_db/models/prediction/image_classification.py +0 -51
  716. endoreg_db/models/prediction/video_prediction_meta.py +0 -306
  717. endoreg_db/models/product/product.py +0 -110
  718. endoreg_db/models/product/product_group.py +0 -27
  719. endoreg_db/models/product/product_material.py +0 -28
  720. endoreg_db/models/questionnaires/__init__.py +0 -114
  721. endoreg_db/models/quiz/__init__.py +0 -9
  722. endoreg_db/models/quiz/quiz_answer.py +0 -41
  723. endoreg_db/models/quiz/quiz_question.py +0 -54
  724. endoreg_db/models/report_reader/report_reader_config.py +0 -53
  725. endoreg_db/models/rules/__init__.py +0 -5
  726. endoreg_db/queries/get/__init__.py +0 -6
  727. endoreg_db/queries/get/center.py +0 -42
  728. endoreg_db/queries/get/model.py +0 -13
  729. endoreg_db/queries/get/patient.py +0 -14
  730. endoreg_db/queries/get/patient_examination.py +0 -20
  731. endoreg_db/queries/get/report_file.py +0 -33
  732. endoreg_db/queries/get/video.py +0 -31
  733. endoreg_db/serializers/ai_model.py +0 -19
  734. endoreg_db/serializers/annotation.py +0 -14
  735. endoreg_db/serializers/center.py +0 -11
  736. endoreg_db/serializers/examination.py +0 -33
  737. endoreg_db/serializers/frame.py +0 -9
  738. endoreg_db/serializers/hardware.py +0 -21
  739. endoreg_db/serializers/label.py +0 -22
  740. endoreg_db/serializers/patient.py +0 -33
  741. endoreg_db/serializers/prediction.py +0 -10
  742. endoreg_db/serializers/raw_pdf_anony_text_validation.py +0 -137
  743. endoreg_db/serializers/report_file.py +0 -7
  744. endoreg_db/serializers/video.py +0 -20
  745. endoreg_db/serializers/video_segmentation.py +0 -574
  746. endoreg_db/tests.py +0 -3
  747. endoreg_db/utils/legacy_ocr.py +0 -201
  748. endoreg_db/utils/video/transcode_videofile.py +0 -111
  749. endoreg_db/views/patient_views.py +0 -90
  750. endoreg_db/views/raw_pdf_anony_text_validation_views.py +0 -95
  751. endoreg_db/views/raw_pdf_meta_validation_views.py +0 -111
  752. endoreg_db/views/raw_video_meta_validation_views.py +0 -148
  753. endoreg_db/views/report_views.py +0 -96
  754. endoreg_db/views/video_segmentation_views.py +0 -166
  755. endoreg_db-0.6.4.dist-info/METADATA +0 -161
  756. endoreg_db-0.6.4.dist-info/RECORD +0 -470
  757. /endoreg_db/{case_generator/__init__.py → api/serializers/finding_descriptions.py} +0 -0
  758. /endoreg_db/{queries/get/annotation.py → api/views/finding_descriptions.py} +0 -0
  759. /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
  760. /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
  761. /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
  762. /endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +0 -0
  763. /endoreg_db/models/{persons → administration/person}/person.py +0 -0
  764. /endoreg_db/models/{product → administration/product}/__init__.py +0 -0
  765. /endoreg_db/models/{report_reader → media/pdf/report_reader}/__init__.py +0 -0
  766. /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
  767. /endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +0 -0
  768. /endoreg_db/models/{medication → medical/medication}/__init__.py +0 -0
  769. /endoreg_db/models/{medication → medical/medication}/medication_indication.py +0 -0
  770. /endoreg_db/models/{risk → medical/risk}/__init__.py +0 -0
  771. /endoreg_db/models/{risk → medical/risk}/risk.py +0 -0
  772. /endoreg_db/models/{emission → other/emission}/__init__.py +0 -0
  773. /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
  774. /endoreg_db/{case_generator → utils/case_generator}/case_generator.py +0 -0
  775. /endoreg_db/{case_generator → utils/case_generator}/lab_sample_factory.py +0 -0
  776. /endoreg_db/{case_generator → utils/case_generator}/utils.py +0 -0
  777. /endoreg_db/views/{csrf.py → misc/csrf.py} +0 -0
  778. {endoreg_db-0.6.4.dist-info → endoreg_db-0.8.2.dist-info}/WHEEL +0 -0
  779. {endoreg_db-0.6.4.dist-info → endoreg_db-0.8.2.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,58 @@
1
+ Model Name,Total Records
2
+ ModelType,2
3
+ AiModel,1
4
+ Center,6
5
+ FirstName,18
6
+ LastName,17
7
+ NumericValueDistribution,2
8
+ SingleCategoricalValueDistribution,1
9
+ DateValueDistribution,1
10
+ Gender,7
11
+ InformationSource,12
12
+ Unit,38
13
+ Label,27
14
+ LabelSet,3
15
+ LabelType,2
16
+ VideoSegmentationLabel,22
17
+ VideoSegmentationLabelSet,1
18
+ Disease,9
19
+ DiseaseClassification,2
20
+ DiseaseClassificationChoice,9
21
+ Event,10
22
+ Contraindication,2
23
+ Examination,9
24
+ ExaminationType,3
25
+ ExaminationTime,5
26
+ ExaminationTimeType,1
27
+ ExaminationIndication,29
28
+ ExaminationIndicationClassification,13
29
+ ExaminationIndicationClassificationChoice,5
30
+ Finding,8
31
+ FindingType,5
32
+ FindingLocationClassification,2
33
+ FindingLocationClassificationChoice,11
34
+ FindingMorphologyClassificationType,6
35
+ FindingMorphologyClassification,7
36
+ FindingMorphologyClassificationChoice,27
37
+ FindingIntervention,66
38
+ FindingInterventionType,4
39
+ PatientLabSampleType,1
40
+ Risk,7
41
+ RiskType,4
42
+ Medication,10
43
+ MedicationSchedule,10
44
+ MedicationIntakeTime,4
45
+ MedicationIndicationType,9
46
+ MedicationIndication,8
47
+ EndoscopyProcessor,1
48
+ Endoscope,10
49
+ EndoscopeType,2
50
+ LabValue,76
51
+ Organ,5
52
+ PdfType,3
53
+ ReportReaderFlag,12
54
+ RequirementType,23
55
+ Requirement,79
56
+ RequirementOperator,32
57
+ RequirementSetType,3
58
+ RequirementSet,8
Binary file
@@ -1,6 +1,5 @@
1
1
  - model: endoreg_db.disease
2
2
  fields:
3
- name: "malignoma_unspecified"
3
+ name: "disease_is_malignoma_unspecified"
4
4
  name_de: "Malignom, nicht näher bezeichnet"
5
5
  name_en: "Malignoma, unspecified"
6
-
@@ -4,6 +4,9 @@
4
4
  image_width: 1920
5
5
  image_height: 1080
6
6
 
7
+ centers:
8
+ - "university_hospital_wuerzburg"
9
+
7
10
  endoscope_image_x: 550
8
11
  endoscope_image_y: 0
9
12
  endoscope_image_width: 1350
@@ -13,16 +13,3 @@
13
13
  name: "complication_coro_stent_thrombosis"
14
14
  name_de: "Komplikation: Koronar Stent Thrombose"
15
15
  name_en: "Complication: Coronary Stent Thrombosis"
16
-
17
- - model: endoreg_db.event
18
- fields:
19
- name: "pulmonary_embolism"
20
- name_de: "Lungenembolie"
21
- name_en: "Pulmonary Embolism"
22
-
23
- - model: endoreg_db.event
24
- fields:
25
- name: "deep_vein_thrombosis"
26
- name_de: "Tiefe Beinvenenthrombose"
27
- name_en: "Deep Vein Thrombosis"
28
-
@@ -1,11 +1,11 @@
1
- - model: report.Examination
1
+ - model: endoreg_db.Examination
2
2
  fields:
3
3
  name: "colonoscopy"
4
4
  name_de: "Koloskopie"
5
5
  name_en: "Colonoscopy"
6
6
  examination_types: ["endoscopy"]
7
7
 
8
- - model: report.Examination
8
+ - model: endoreg_db.Examination
9
9
  fields:
10
10
  name: "gastroscopy"
11
11
  name_de: "Gastroskopie"
@@ -13,14 +13,14 @@
13
13
  examination_types: ["endoscopy"]
14
14
 
15
15
  # endosonography_upper_gi
16
- - model: report.Examination
16
+ - model: endoreg_db.Examination
17
17
  fields:
18
18
  name: "endosonography_upper_gi"
19
19
  name_de: "Endosonographie oberer GI-Trakt"
20
20
  name_en: "Endosonography Upper GI Tract"
21
21
  examination_types: ["endoscopy"]
22
22
 
23
- - model: report.Examination
23
+ - model: endoreg_db.Examination
24
24
  fields:
25
25
  name: "endosonography_lower_gi"
26
26
  name_de: "Endosonographie unterer GI-Trakt"
@@ -28,7 +28,7 @@
28
28
  examination_types: ["endoscopy"]
29
29
 
30
30
  # ERCP
31
- - model: report.Examination
31
+ - model: endoreg_db.Examination
32
32
  fields:
33
33
  name: "ercp"
34
34
  name_de: "ERCP"
@@ -36,7 +36,7 @@
36
36
  examination_types: ["endoscopy"]
37
37
 
38
38
  # small bowel endoscopy
39
- - model: report.Examination
39
+ - model: endoreg_db.Examination
40
40
  fields:
41
41
  name: "small_bowel_endoscopy"
42
42
  name_de: "Dünndarmendoskopie"
@@ -44,14 +44,14 @@
44
44
  examination_types: ["endoscopy"]
45
45
 
46
46
  # capsule endoscopy
47
- - model: report.Examination
47
+ - model: endoreg_db.Examination
48
48
  fields:
49
49
  name: "capsule_endoscopy"
50
50
  name_de: "Kapselendoskopie"
51
51
  name_en: "Capsule Endoscopy"
52
52
  examination_types: ["endoscopy"]
53
53
 
54
- - model: report.Examination
54
+ - model: endoreg_db.Examination
55
55
  fields:
56
56
  name: "percutaneous_transhepatic_biliary_drainage"
57
57
  name_de: "Perkutane transhepatische Gallengangdrainage"
@@ -59,9 +59,14 @@
59
59
  examination_types: ["endoscopy", "sonography", "xray"]
60
60
 
61
61
  # percutaneous_transhepatic_cholangiography
62
- - model: report.Examination
62
+ - model: endoreg_db.Examination
63
63
  fields:
64
64
  name: "percutaneous_transhepatic_cholangiography"
65
65
  name_de: "Perkutane transhepatische Cholangiographie"
66
66
  name_en: "Percutaneous Transhepatic Cholangiography"
67
67
  examination_types: ["endoscopy", "sonography", "xray"]
68
+
69
+ - model: endoreg_db.Examination
70
+ fields:
71
+ name: "colonoscopy_austria_screening"
72
+ examination_types: ["endoscopy"]
@@ -5,7 +5,7 @@
5
5
  name: "colonoscopy"
6
6
  name_de: "Koloskopie"
7
7
  name_en: "Colonoscopy"
8
- examination: "colonoscopy"
8
+ examinations: ["colonoscopy"]
9
9
  description: "Colonoscopy without further specification"
10
10
 
11
11
  ## Colonoscopy elective
@@ -14,7 +14,7 @@
14
14
  name: "colonoscopy_screening"
15
15
  name_de: "Koloskopie (Screening)"
16
16
  name_en: "Colonoscopy (Screening)"
17
- examination: "colonoscopy"
17
+ examinations: ["colonoscopy"]
18
18
  description: "Colonoscopy for screening purposes"
19
19
  expected_interventions: # Many2Many to finding intervention
20
20
  [
@@ -29,7 +29,7 @@
29
29
  name: "colonoscopy_lesion_removal_small"
30
30
  name_de: "Koloskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
31
31
  name_en: "Colonoscopy (Lesion removal, small (< 10 mm), elective)"
32
- examination: "colonoscopy"
32
+ examinations: ["colonoscopy"]
33
33
  description: "Elective colonoscopy for removal of small lesions (< 10 mm)"
34
34
  expected_interventions:
35
35
  [
@@ -47,7 +47,7 @@
47
47
  name: "colonoscopy_lesion_removal_emr"
48
48
  name_de: "Koloskopie (Läsionsentfernung, EMR, elektiv)"
49
49
  name_en: "Colonoscopy (Lesion removal, EMR, elective)"
50
- examination: "colonoscopy"
50
+ examinations: ["colonoscopy"]
51
51
  description: "Elective colonoscopy for removal of lesions using EMR"
52
52
  expected_interventions:
53
53
  [
@@ -63,7 +63,7 @@
63
63
  name: "colonoscopy_lesion_removal_large"
64
64
  name_de: "Koloskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
65
65
  name_en: "Colonoscopy (Lesion removal, large (≥ 10 mm), elective)"
66
- examination: "colonoscopy"
66
+ examinations: ["colonoscopy"]
67
67
  description: "Elective colonoscopy for removal of large lesions (≥ 10 mm)"
68
68
  expected_interventions:
69
69
  [
@@ -73,7 +73,7 @@
73
73
  "colon_lesion_over_the_scope_clip",
74
74
  "colon_lesion_emr",
75
75
  "colon_lesion_esd",
76
- "colon_eftr",
76
+ "colon_lesion_eftr",
77
77
  ]
78
78
 
79
79
  ## Colonoscopy Acute
@@ -82,7 +82,7 @@
82
82
  name: "colonoscopy_diagnostic_acute_symptomatic"
83
83
  name_de: "Koloskopie (Diagnostik, akut-symptomatisch)"
84
84
  name_en: "Colonoscopy (Diagnostic, Acute Symptomatic)"
85
- examination: "colonoscopy"
85
+ examinations: ["colonoscopy"]
86
86
  description: "Colonoscopy for diagnostic purposes in acute symptomatic patients"
87
87
  expected_interventions:
88
88
  ["colon_lesion_clip", "colon_lesion_injection_vasoactive"]
@@ -93,7 +93,7 @@
93
93
  name: "gastroscopy"
94
94
  name_de: "Gastroskopie"
95
95
  name_en: "Gastroscopy"
96
- examination: "gastroscopy"
96
+ examinations: ["gastroscopy"]
97
97
  description: "Gastroscopy without further specification"
98
98
  expected_interventions: # Many2Many to finding intervention
99
99
  [
@@ -109,7 +109,7 @@
109
109
  name: "gastroscopy_baseline"
110
110
  name_de: "Gastroskopie (Basis)"
111
111
  name_en: "Gastroscopy (Baseline)"
112
- examination: "gastroscopy"
112
+ examinations: ["gastroscopy"]
113
113
  description: "Baseline gastroscopy"
114
114
  expected_interventions: ["egd_lesion_biopsy"]
115
115
 
@@ -119,7 +119,7 @@
119
119
  name: "gastroscopy_diagnostic_acute_symptomatic"
120
120
  name_de: "Gastroskopie (Diagnostik, akut-symptomatisch)"
121
121
  name_en: "Gastroscopy (Diagnostic, Acute Symptomatic)"
122
- examination: "gastroscopy"
122
+ examinations: ["gastroscopy"]
123
123
  description: "Gastroscopy for diagnostic purposes in acute symptomatic patients"
124
124
  expected_interventions: [
125
125
  "egd_hp_biopsy", # default
@@ -130,7 +130,7 @@
130
130
  name: "gastroscopy_acute_bleeding"
131
131
  name_de: "Gastroskopie (akute Blutung)"
132
132
  name_en: "Gastroscopy (acute bleeding)"
133
- examination: "gastroscopy"
133
+ examinations: ["gastroscopy"]
134
134
  description: "Gastroscopy for acute bleeding"
135
135
  expected_interventions: [
136
136
  "egd_lesion_injection_vasoactive",
@@ -147,7 +147,7 @@
147
147
  name: "gastroscopy_diagnostic_elective"
148
148
  name_de: "Gastroskopie (Diagnostik, elektiv)"
149
149
  name_en: "Gastroscopy (Diagnostic, Elective)"
150
- examination: "gastroscopy"
150
+ examinations: ["gastroscopy"]
151
151
  description: "Gastroscopy for diagnostic purposes in elective patients"
152
152
  expected_interventions: ["egd_hp_biopsy"]
153
153
 
@@ -156,7 +156,7 @@
156
156
  name: "gastroscopy_percutane_enterostomy"
157
157
  name_de: "Gastroskopie (perkutane Enterostomie)"
158
158
  name_en: "Gastroscopy (percutaneous enterostomy)"
159
- examination: "gastroscopy"
159
+ examinations: ["gastroscopy"]
160
160
  description: "Gastroscopy for percutaneous enterostomy"
161
161
  expected_interventions:
162
162
  [
@@ -171,7 +171,7 @@
171
171
  name: "gastroscopy_therapeutic_varicosis_esophagus"
172
172
  name_de: "Gastroskopie (Therapie, Varikosis Ösophagus, elektiv)"
173
173
  name_en: "Gastroscopy (Therapeutic, Varicosis Esophagus, elective)"
174
- examination: "gastroscopy"
174
+ examinations: ["gastroscopy"]
175
175
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the esophagus"
176
176
  expected_interventions:
177
177
  [
@@ -186,7 +186,7 @@
186
186
  name: "gastroscopy_therapeutic_varicosis_stomach"
187
187
  name_de: "Gastroskopie (Therapie, Varikosis Magen, elektiv)"
188
188
  name_en: "Gastroscopy (Therapeutic, Varicosis Stomach, elective)"
189
- examination: "gastroscopy"
189
+ examinations: ["gastroscopy"]
190
190
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the stomach"
191
191
  expected_interventions:
192
192
  [
@@ -201,7 +201,7 @@
201
201
  name: "gastroscopy_therapeutic_varicosis_intestine"
202
202
  name_de: "Gastroskopie (Therapie, Varikosis Darm, elektiv)"
203
203
  name_en: "Gastroscopy (Therapeutic, Varicosis Intestine, elective)"
204
- examination: "gastroscopy"
204
+ examinations: ["gastroscopy"]
205
205
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the intestine"
206
206
  expected_interventions:
207
207
  [
@@ -216,7 +216,7 @@
216
216
  name: "gastroscopy_lesion_removal_small"
217
217
  name_de: "Gastroskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
218
218
  name_en: "Gastroscopy (Lesion removal, small (< 10 mm), elective)"
219
- examination: "gastroscopy"
219
+ examinations: ["gastroscopy"]
220
220
  description: "Elective gastroscopy for removal of small lesions (< 10 mm)"
221
221
  expected_interventions:
222
222
  [
@@ -234,7 +234,7 @@
234
234
  name: "gastroscopy_lesion_removal_large"
235
235
  name_de: "Gastroskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
236
236
  name_en: "Gastroscopy (Lesion removal, large (≥ 10 mm), elective)"
237
- examination: "gastroscopy"
237
+ examinations: ["gastroscopy"]
238
238
  description: "Elective gastroscopy for removal of large lesions (≥ 10 mm)"
239
239
  expected_interventions:
240
240
  [
@@ -253,7 +253,7 @@
253
253
  name: "gastroscopy_obstruction_generic"
254
254
  name_de: "Gastroskopie (Obstruktion / Dysphagie, generisch, elektiv)"
255
255
  name_en: "Gastroscopy (Obstruction / Dysphagia, generic, elective)"
256
- examination: "gastroscopy"
256
+ examinations: ["gastroscopy"]
257
257
  description: "Elective gastroscopy for patients with obstruction / dysphagia"
258
258
  expected_interventions:
259
259
  [
@@ -276,7 +276,7 @@
276
276
  name: "endosonography_upper_gi"
277
277
  name_de: "Endosonographie oberer GI-Trakt"
278
278
  name_en: "Endosonography Upper GI Tract"
279
- examination: "endosonography_upper_gi"
279
+ examinations: ["endosonography_upper_gi"]
280
280
  description: "Endosonography of the upper GI tract without further specification"
281
281
  expected_interventions: []
282
282
 
@@ -285,7 +285,7 @@
285
285
  name: "endosonography_upper_gi_invasive"
286
286
  name_de: "Endosonographie oberer GI-Trakt (invasiv)"
287
287
  name_en: "Endosonography Upper GI Tract (invasive)"
288
- examination: "endosonography_upper_gi"
288
+ examinations: ["endosonography_upper_gi"]
289
289
  description: "Invasive endosonography of the upper GI tract"
290
290
  expected_interventions:
291
291
  [
@@ -305,7 +305,7 @@
305
305
  name: "endosonography_lower_gi"
306
306
  name_de: "Endosonographie unterer GI-Trakt"
307
307
  name_en: "Endosonography Lower GI Tract"
308
- examination: "endosonography_lower_gi"
308
+ examinations: ["endosonography_lower_gi"]
309
309
  description: "Endosonography of the lower GI tract without further specification"
310
310
  expected_interventions: []
311
311
 
@@ -314,7 +314,7 @@
314
314
  name: "endosonography_lower_gi_invasive"
315
315
  name_de: "Endosonographie unterer GI-Trakt (invasiv)"
316
316
  name_en: "Endosonography Lower GI Tract (invasive)"
317
- examination: "endosonography_lower_gi"
317
+ examinations: ["endosonography_lower_gi"]
318
318
  description: "Invasive endosonography of the lower GI tract"
319
319
  expected_interventions:
320
320
  [
@@ -328,7 +328,7 @@
328
328
  name: "percutaneous_transhepatic_cholangiography"
329
329
  name_de: "Perkutane transhepatische Cholangiographie"
330
330
  name_en: "Percutaneous Transhepatic Cholangiography"
331
- examination: "percutaneous_transhepatic_cholangiography"
331
+ examinations: ["percutaneous_transhepatic_cholangiography"]
332
332
  description: "Percutaneous transhepatic cholangiography without further specification"
333
333
  expected_interventions:
334
334
  [
@@ -342,7 +342,7 @@
342
342
  name: "percutaneous_transhepatic_biliary_drainage"
343
343
  name_de: "Perkutane transhepatische Gallengangdrainage"
344
344
  name_en: "Percutaneous Transhepatic Biliary Drainage"
345
- examination: "percutaneous_transhepatic_cholangiography"
345
+ examinations: ["percutaneous_transhepatic_cholangiography"]
346
346
  description: "Percutaneous transhepatic biliary drainage without further specification"
347
347
  expected_interventions:
348
348
  [
@@ -357,7 +357,7 @@
357
357
  name: "erc"
358
358
  name_de: "Endoskopische retrograde Cholangiographie"
359
359
  name_en: "Endoscopic Retrograde Cholangiography"
360
- examination: "ercp"
360
+ examinations: ["ercp"]
361
361
  description: "ERC without further specification"
362
362
  expected_interventions:
363
363
  [
@@ -373,7 +373,7 @@
373
373
  name: "erc_no_est"
374
374
  name_de: "ERC (ohne EST)"
375
375
  name_en: "ERC (without EST)"
376
- examination: "ercp"
376
+ examinations: ["ercp"]
377
377
  description: "ERC without endoscopic sphincterotomy"
378
378
  expected_interventions:
379
379
  ["erc", "ercp_stent", "ercp_extraction", "ercp_biopsy"]
@@ -383,7 +383,7 @@
383
383
  name: "ERCP"
384
384
  name_de: "Endoskopische retrograde Cholangiopankreatikographie"
385
385
  name_en: "Endoscopic Retrograde Cholangiopancreatography"
386
- examination: "ercp"
386
+ examinations: ["ercp"]
387
387
  description: "ERCP without further specification"
388
388
  expected_interventions:
389
389
  [
@@ -400,7 +400,7 @@
400
400
  name: "ercp_no_est"
401
401
  name_de: "ERCP (ohne EST)"
402
402
  name_en: "ERCP (without EST)"
403
- examination: "ercp"
403
+ examinations: ["ercp"]
404
404
  description: "ERCP without endoscopic sphincterotomy"
405
405
  expected_interventions:
406
406
  ["erc", "erp", "ercp_stent", "ercp_extraction", "ercp_biopsy"]
@@ -410,7 +410,7 @@
410
410
  name: "ercp_therapeutic_stenosis"
411
411
  name_de: "ERC(P) (Therapie, Stenose)"
412
412
  name_en: "ERC(P) (Therapeutic, Stenosis)"
413
- examination: "ercp"
413
+ examinations: ["ercp"]
414
414
  description: "ERC(P) for therapeutic purposes in patients with stenosis"
415
415
  expected_interventions:
416
416
  [
@@ -4,7 +4,7 @@
4
4
  name_de: Koloskopie (unspezifisch)
5
5
  name_en: Colonoscopy (unspecific)
6
6
  description: Colonoscopy without further specification
7
- examination: colonoscopy
7
+ examinations: ["colonoscopy"]
8
8
  indications:
9
9
  [
10
10
  "colonoscopy",
@@ -20,7 +20,7 @@
20
20
  name_de: Koloskopie (akut)
21
21
  name_en: Colonoscopy (acute)
22
22
  description: Colonoscopy for acute indications
23
- examination: colonoscopy
23
+ examinations: ["colonoscopy"]
24
24
  indications: ["colonoscopy_diagnostic_acute_symptomatic"]
25
25
 
26
26
  - model: endoreg_db.examination_indication_classification
@@ -29,7 +29,7 @@
29
29
  name_de: Koloskopie (elektiv)
30
30
  name_en: Colonoscopy (elective)
31
31
  description: Colonoscopy for elective indications
32
- examination: colonoscopy
32
+ examinations: ["colonoscopy"]
33
33
  indications:
34
34
  [
35
35
  "colonoscopy_screening",
@@ -43,7 +43,7 @@
43
43
  name_de: Gastroskopie
44
44
  name_en: Gastroscopy
45
45
  description: Gastroscopy without further specification
46
- examination: gastroscopy
46
+ examinations: ["gastroscopy"]
47
47
  indications:
48
48
  [
49
49
  "gastroscopy",
@@ -66,7 +66,7 @@
66
66
  name_de: Gastroskopie (akut)
67
67
  name_en: Gastroscopy (acute)
68
68
  description: Gastroscopy for acute indications
69
- examination: gastroscopy
69
+ examinations: ["gastroscopy"]
70
70
  indications:
71
71
  ["gastroscopy_diagnostic_acute_symptomatic", "gastroscopy_acute_bleeding"]
72
72
 
@@ -76,7 +76,7 @@
76
76
  name_de: Gastroskopie (elektiv)
77
77
  name_en: Gastroscopy (elective)
78
78
  description: Gastroscopy for elective indications
79
- examination: gastroscopy
79
+ examinations: ["gastroscopy"]
80
80
  indications:
81
81
  [
82
82
  "gastroscopy_diagnostic_elective",
@@ -95,7 +95,7 @@
95
95
  name_de: "Dünndarmendoskopie"
96
96
  name_en: Small Bowel Endoscopy
97
97
  description: Small Bowel Endoscopy without further specification
98
- examination: small_bowel_endoscopy
98
+ examinations: ["small_bowel_endoscopy"]
99
99
  indications: []
100
100
 
101
101
  - model: endoreg_db.examination_indication_classification
@@ -104,7 +104,7 @@
104
104
  name_de: Kapselendoskopie
105
105
  name_en: Capsule Endoscopy
106
106
  description: Capsule Endoscopy without further specification
107
- examination: capsule_endoscopy
107
+ examinations: ["capsule_endoscopy"]
108
108
  indications: []
109
109
 
110
110
  - model: endoreg_db.examination_indication_classification
@@ -113,7 +113,7 @@
113
113
  name_de: Endosonographie unterer GI-Trakt
114
114
  name_en: Endosonography Lower GI Tract
115
115
  description: Endosonography Lower GI Tract without further specification
116
- examination: endosonography_lower_gi
116
+ examinations: ["endosonography_lower_gi"]
117
117
  indications: ["endosonography_lower_gi"]
118
118
 
119
119
  - model: endoreg_db.examination_indication_classification
@@ -122,7 +122,7 @@
122
122
  name_de: Endosonographie oberer GI-Trakt
123
123
  name_en: Endosonography Upper GI Tract
124
124
  description: Endosonography Upper GI Tract without further specification
125
- examination: endosonography_upper_gi
125
+ examinations: ["endosonography_upper_gi"]
126
126
  indications: ["endosonography_upper_gi", "endosonography_upper_gi_invasive"]
127
127
 
128
128
  - model: endoreg_db.examination_indication_classification
@@ -131,7 +131,7 @@
131
131
  name_de: Endoskopische retrograde Cholangiopankreatikographie
132
132
  name_en: Endoscopic Retrograde Cholangiopancreatography
133
133
  description: Endoscopic Retrograde Cholangiopancreatography without further specification
134
- examination: ercp
134
+ examinations: ["ercp"]
135
135
  indications:
136
136
  ["erc", "erc_no_est", "ERCP", "ercp_no_est", "ercp_therapeutic_stenosis"]
137
137
 
@@ -0,0 +1,15 @@
1
+ - model: endoreg_db.examination_requirement_set
2
+ fields:
3
+ name: "colonoscopy_req_sets"
4
+ examinations:
5
+ [
6
+ "colonoscopy",
7
+ ]
8
+
9
+ - model: endoreg_db.examination_requirement_set
10
+ fields:
11
+ name: "colonoscopy_austria_req_sets"
12
+ examinations:
13
+ [
14
+ "colonoscopy_austria_screening",
15
+ ]
@@ -0,0 +1,128 @@
1
+ - model: endoreg_db.finding
2
+ fields:
3
+ name: "cecum"
4
+ description: "Anatomical structure: Cecum"
5
+ examinations:
6
+ [
7
+ "colonoscopy",
8
+ "colonoscopy_austria_screening",
9
+ ]
10
+
11
+ finding_types: ["anatomy", "anatomy_colon"]
12
+
13
+ - model: endoreg_db.finding
14
+ fields:
15
+ name: "terminal_ileum"
16
+ description: "Anatomical structure: Terminal ileum"
17
+ examinations:
18
+ [
19
+ "colonoscopy",
20
+ "colonoscopy_austria_screening",
21
+ ]
22
+ finding_types: ["anatomy", "anatomy_colon"]
23
+
24
+ - model: endoreg_db.finding
25
+ fields:
26
+ name: "ileocecal_valve"
27
+ description: "Anatomical structure: Ileocecal valve"
28
+ examinations:
29
+ [
30
+ "colonoscopy",
31
+ "colonoscopy_austria_screening",
32
+ ]
33
+ finding_types: ["anatomy", "anatomy_colon"]
34
+
35
+ - model: endoreg_db.finding
36
+ fields:
37
+ name: "ascending_colon"
38
+ description: "Anatomical structure: Ascending colon"
39
+ examinations:
40
+ [
41
+ "colonoscopy",
42
+ "colonoscopy_austria_screening",
43
+ ]
44
+ finding_types: ["anatomy", "anatomy_colon"]
45
+
46
+ # "right_flexure",
47
+ - model: endoreg_db.finding
48
+ fields:
49
+ name: "right_flexure"
50
+ description: "Anatomical structure: Right flexure"
51
+ examinations:
52
+ [
53
+ "colonoscopy",
54
+ "colonoscopy_austria_screening",
55
+ ]
56
+ finding_types: ["anatomy", "anatomy_colon"]
57
+
58
+ # "transverse_colon",
59
+ - model: endoreg_db.finding
60
+ fields:
61
+ name: "transverse_colon"
62
+ description: "Anatomical structure: Transverse colon"
63
+ examinations:
64
+ [
65
+ "colonoscopy",
66
+ "colonoscopy_austria_screening",
67
+ ]
68
+ finding_types: ["anatomy", "anatomy_colon"]
69
+
70
+ # "left_flexure",
71
+ - model: endoreg_db.finding
72
+ fields:
73
+ name: "left_flexure"
74
+ description: "Anatomical structure: Left flexure"
75
+ examinations:
76
+ [
77
+ "colonoscopy",
78
+ "colonoscopy_austria_screening",
79
+ ]
80
+ finding_types: ["anatomy", "anatomy_colon"]
81
+
82
+ # "descending_colon",
83
+ - model: endoreg_db.finding
84
+ fields:
85
+ name: "descending_colon"
86
+ description: "Anatomical structure: Descending colon"
87
+ examinations:
88
+ [
89
+ "colonoscopy",
90
+ "colonoscopy_austria_screening",
91
+ ]
92
+ finding_types: ["anatomy", "anatomy_colon"]
93
+
94
+ # "sigmoid_colon",
95
+ - model: endoreg_db.finding
96
+ fields:
97
+ name: "sigmoid_colon"
98
+ description: "Anatomical structure: Sigmoid colon"
99
+ examinations:
100
+ [
101
+ "colonoscopy",
102
+ "colonoscopy_austria_screening",
103
+ ]
104
+ finding_types: ["anatomy", "anatomy_colon"]
105
+
106
+ # "rectum",
107
+ - model: endoreg_db.finding
108
+ fields:
109
+ name: "rectum"
110
+ description: "Anatomical structure: Rectum"
111
+ examinations:
112
+ [
113
+ "colonoscopy",
114
+ "colonoscopy_austria_screening",
115
+ ]
116
+ finding_types: ["anatomy", "anatomy_colon"]
117
+
118
+ # "rectum_anus",
119
+ - model: endoreg_db.finding
120
+ fields:
121
+ name: "rectum_anus"
122
+ description: "Anatomical structure: Rectum and anus"
123
+ examinations:
124
+ [
125
+ "colonoscopy",
126
+ "colonoscopy_austria_screening",
127
+ ]
128
+ finding_types: ["anatomy", "anatomy_colon"]