endoreg-db 0.6.3__py3-none-any.whl → 0.8.1__py3-none-any.whl

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  1. endoreg_db/admin.py +26 -26
  2. endoreg_db/api_urls.py +4 -0
  3. endoreg_db/apps.py +12 -0
  4. endoreg_db/assets/dummy_model.ckpt +1 -0
  5. endoreg_db/codemods/readme.md +88 -0
  6. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  7. endoreg_db/config/env.py +101 -0
  8. endoreg_db/data/__init__.py +26 -0
  9. endoreg_db/data/ai_model/data.yaml +1 -1
  10. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  11. endoreg_db/data/ai_model_label/label-set/data.yaml +20 -1
  12. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  13. endoreg_db/data/center/data.yaml +13 -12
  14. endoreg_db/data/center_shift/ukw.yaml +9 -0
  15. endoreg_db/data/db_summary.csv +58 -0
  16. endoreg_db/data/db_summary.xlsx +0 -0
  17. endoreg_db/data/disease/misc.yaml +1 -2
  18. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +2 -2
  19. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +6 -6
  20. endoreg_db/data/endoscopy_processor/data.yaml +3 -0
  21. endoreg_db/data/event/cardiology.yaml +0 -13
  22. endoreg_db/data/examination/examinations/data.yaml +34 -28
  23. endoreg_db/data/examination/type/data.yaml +12 -0
  24. endoreg_db/data/examination_indication/endoscopy.yaml +418 -2
  25. endoreg_db/data/examination_indication_classification/endoscopy.yaml +157 -5
  26. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  27. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  28. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  29. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  30. endoreg_db/data/finding/complication.yaml +16 -0
  31. endoreg_db/data/finding/data.yaml +8 -44
  32. endoreg_db/data/finding/examination_setting.yaml +16 -0
  33. endoreg_db/data/finding/medication_related.yaml +18 -0
  34. endoreg_db/data/finding/outcome.yaml +12 -0
  35. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  36. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  37. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  38. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  39. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  40. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  41. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  42. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  43. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  44. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  45. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  46. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  47. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  48. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  49. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  50. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  51. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  52. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  53. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  54. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  55. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_circularity_default.yaml +0 -2
  56. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  57. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  58. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  59. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_nice.yaml +4 -7
  60. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_paris.yaml +0 -8
  61. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_planarity_default.yaml +6 -13
  62. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  63. endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_surface_intact_default.yaml +3 -6
  64. endoreg_db/data/{finding_location_classification_choice/colonoscopy.yaml → finding_classification_choice/colonoscopy_location.yaml} +11 -22
  65. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  66. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  67. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  68. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  69. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  70. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  71. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  72. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  73. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  74. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  75. endoreg_db/data/finding_intervention/endoscopy.yaml +26 -121
  76. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
  77. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
  78. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
  79. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
  80. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
  81. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +6 -6
  82. endoreg_db/data/finding_type/data.yaml +23 -10
  83. endoreg_db/data/gender/data.yaml +8 -1
  84. endoreg_db/data/information_source/annotation.yaml +6 -0
  85. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  86. endoreg_db/data/information_source/prediction.yaml +7 -0
  87. endoreg_db/data/information_source_type/data.yaml +8 -0
  88. endoreg_db/data/lab_value/misc.yaml +43 -0
  89. endoreg_db/data/medication/anticoagulation.yaml +5 -5
  90. endoreg_db/data/medication/tah.yaml +5 -5
  91. endoreg_db/data/medication_indication/anticoagulation.yaml +4 -4
  92. endoreg_db/data/medication_intake_time/base.yaml +4 -4
  93. endoreg_db/data/names_first/first_names.yaml +3 -0
  94. endoreg_db/data/pdf_type/data.yaml +27 -10
  95. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  96. endoreg_db/data/qualification/m2.yaml +39 -0
  97. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  98. endoreg_db/data/qualification/sonography.yaml +36 -0
  99. endoreg_db/data/qualification_type/base.yaml +29 -0
  100. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  101. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
  102. endoreg_db/data/requirement/age.yaml +26 -0
  103. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  104. endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
  105. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
  106. endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
  107. endoreg_db/data/requirement/disease_misc.yaml +12 -0
  108. endoreg_db/data/requirement/disease_renal.yaml +96 -0
  109. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
  110. endoreg_db/data/requirement/event_cardiology.yaml +251 -0
  111. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  112. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  113. endoreg_db/data/requirement/gender.yaml +25 -0
  114. endoreg_db/data/requirement/lab_value.yaml +441 -0
  115. endoreg_db/data/requirement/medication.yaml +93 -0
  116. endoreg_db/data/requirement_operator/age.yaml +13 -0
  117. endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
  118. endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
  119. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  120. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  121. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
  122. endoreg_db/data/requirement_set_type/data.yaml +20 -0
  123. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  124. endoreg_db/data/risk/bleeding.yaml +26 -0
  125. endoreg_db/data/risk/thrombosis.yaml +37 -0
  126. endoreg_db/data/risk_type/data.yaml +27 -0
  127. endoreg_db/data/shift/endoscopy.yaml +21 -0
  128. endoreg_db/data/shift_type/base.yaml +35 -0
  129. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  130. endoreg_db/data/unit/concentration.yaml +23 -0
  131. endoreg_db/data/unit/time.yaml +36 -1
  132. endoreg_db/exceptions.py +19 -0
  133. endoreg_db/forms/patient_finding_intervention_form.py +4 -5
  134. endoreg_db/forms/patient_form.py +7 -6
  135. endoreg_db/forms/questionnaires/__init__.py +1 -1
  136. endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
  137. endoreg_db/helpers/count_db.py +45 -0
  138. endoreg_db/helpers/data_loader.py +208 -0
  139. endoreg_db/helpers/default_objects.py +359 -0
  140. endoreg_db/helpers/interact.py +6 -0
  141. endoreg_db/helpers/test_video_helper.py +119 -0
  142. endoreg_db/logger_conf.py +140 -0
  143. endoreg_db/management/__init__.py +1 -0
  144. endoreg_db/management/commands/__init__.py +1 -0
  145. endoreg_db/management/commands/anonymize_video.py +0 -0
  146. endoreg_db/management/commands/check_auth.py +125 -0
  147. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  148. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  149. endoreg_db/management/commands/fix_video_paths.py +165 -0
  150. endoreg_db/management/commands/import_fallback_video.py +203 -0
  151. endoreg_db/management/commands/import_report.py +298 -0
  152. endoreg_db/management/commands/import_video.py +422 -0
  153. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  154. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  155. endoreg_db/management/commands/load_ai_model_data.py +2 -7
  156. endoreg_db/management/commands/load_base_db_data.py +15 -1
  157. endoreg_db/management/commands/load_center_data.py +46 -21
  158. endoreg_db/management/commands/load_endoscope_data.py +2 -2
  159. endoreg_db/management/commands/load_examination_indication_data.py +49 -28
  160. endoreg_db/management/commands/load_finding_data.py +49 -92
  161. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
  162. endoreg_db/management/commands/load_information_source.py +13 -7
  163. endoreg_db/management/commands/load_qualification_data.py +59 -0
  164. endoreg_db/management/commands/load_requirement_data.py +180 -0
  165. endoreg_db/management/commands/load_risk_data.py +56 -0
  166. endoreg_db/management/commands/load_shift_data.py +60 -0
  167. endoreg_db/management/commands/load_tag_data.py +57 -0
  168. endoreg_db/management/commands/register_ai_model.py +1 -1
  169. endoreg_db/management/commands/start_filewatcher.py +106 -0
  170. endoreg_db/management/commands/storage_management.py +548 -0
  171. endoreg_db/management/commands/summarize_db_content.py +189 -0
  172. endoreg_db/management/commands/validate_video.py +204 -0
  173. endoreg_db/management/commands/validate_video_files.py +161 -0
  174. endoreg_db/management/commands/video_validation.py +22 -0
  175. endoreg_db/migrations/0001_initial.py +625 -813
  176. endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
  177. endoreg_db/models/__init__.py +274 -291
  178. endoreg_db/models/administration/__init__.py +116 -0
  179. endoreg_db/models/{ai_model → administration/ai}/__init__.py +6 -1
  180. endoreg_db/models/administration/ai/active_model.py +35 -0
  181. endoreg_db/models/administration/ai/ai_model.py +156 -0
  182. endoreg_db/models/{ai_model → administration/ai}/model_type.py +6 -1
  183. endoreg_db/models/administration/case/__init__.py +19 -0
  184. endoreg_db/models/administration/case/case.py +114 -0
  185. endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +3 -3
  186. endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +3 -10
  187. endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +2 -4
  188. endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
  189. endoreg_db/models/{center → administration/center}/__init__.py +3 -1
  190. endoreg_db/models/administration/center/center.py +61 -0
  191. endoreg_db/models/administration/center/center_product.py +64 -0
  192. endoreg_db/models/{center → administration/center}/center_resource.py +19 -3
  193. endoreg_db/models/administration/center/center_shift.py +88 -0
  194. endoreg_db/models/administration/center/center_waste.py +30 -0
  195. endoreg_db/models/administration/permissions/__init__.py +44 -0
  196. endoreg_db/models/administration/person/__init__.py +24 -0
  197. endoreg_db/models/administration/person/employee/__init__.py +3 -0
  198. endoreg_db/models/administration/person/employee/employee.py +35 -0
  199. endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
  200. endoreg_db/models/administration/person/employee/employee_type.py +42 -0
  201. endoreg_db/models/administration/person/examiner/__init__.py +4 -0
  202. endoreg_db/models/administration/person/examiner/examiner.py +54 -0
  203. endoreg_db/models/administration/person/names/__init__.py +0 -0
  204. endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
  205. endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
  206. endoreg_db/models/administration/person/patient/__init__.py +5 -0
  207. endoreg_db/models/administration/person/patient/patient.py +460 -0
  208. endoreg_db/models/administration/person/profession/__init__.py +24 -0
  209. endoreg_db/models/administration/person/user/__init__.py +5 -0
  210. endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
  211. endoreg_db/models/administration/product/product.py +97 -0
  212. endoreg_db/models/administration/product/product_group.py +39 -0
  213. endoreg_db/models/administration/product/product_material.py +54 -0
  214. endoreg_db/models/{product → administration/product}/product_weight.py +9 -0
  215. endoreg_db/models/{product → administration/product}/reference_product.py +26 -11
  216. endoreg_db/models/administration/qualification/__init__.py +7 -0
  217. endoreg_db/models/administration/qualification/qualification.py +37 -0
  218. endoreg_db/models/administration/qualification/qualification_type.py +35 -0
  219. endoreg_db/models/administration/shift/__init__.py +9 -0
  220. endoreg_db/models/administration/shift/scheduled_days.py +69 -0
  221. endoreg_db/models/administration/shift/shift.py +51 -0
  222. endoreg_db/models/administration/shift/shift_type.py +108 -0
  223. endoreg_db/models/label/__init__.py +24 -1
  224. endoreg_db/models/label/annotation/__init__.py +12 -0
  225. endoreg_db/models/label/annotation/image_classification.py +84 -0
  226. endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
  227. endoreg_db/models/label/label.py +45 -74
  228. endoreg_db/models/label/label_set.py +53 -0
  229. endoreg_db/models/label/label_type.py +29 -0
  230. endoreg_db/models/label/label_video_segment/__init__.py +3 -0
  231. endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
  232. endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
  233. endoreg_db/models/label/video_segmentation_label.py +31 -0
  234. endoreg_db/models/{annotation → label}/video_segmentation_labelset.py +7 -0
  235. endoreg_db/models/media/__init__.py +14 -0
  236. endoreg_db/models/media/frame/__init__.py +3 -0
  237. endoreg_db/models/media/frame/frame.py +111 -0
  238. endoreg_db/models/media/pdf/__init__.py +11 -0
  239. endoreg_db/models/media/pdf/raw_pdf.py +608 -0
  240. endoreg_db/models/media/pdf/report_file.py +162 -0
  241. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
  242. endoreg_db/models/media/video/__init__.py +4 -0
  243. endoreg_db/models/media/video/create_from_file.py +336 -0
  244. endoreg_db/models/media/video/pipe_1.py +195 -0
  245. endoreg_db/models/media/video/pipe_2.py +105 -0
  246. endoreg_db/models/media/video/refactor_plan.md +0 -0
  247. endoreg_db/models/media/video/video_file.py +680 -0
  248. endoreg_db/models/media/video/video_file_ai.py +443 -0
  249. endoreg_db/models/media/video/video_file_anonymize.py +348 -0
  250. endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
  251. endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
  252. endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
  253. endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
  254. endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
  255. endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
  256. endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
  257. endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
  258. endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
  259. endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
  260. endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
  261. endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
  262. endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +129 -0
  263. endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
  264. endoreg_db/models/media/video/video_file_frames.py +0 -0
  265. endoreg_db/models/media/video/video_file_io.py +166 -0
  266. endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
  267. endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
  268. endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +39 -0
  269. endoreg_db/models/media/video/video_file_meta/get_fps.py +147 -0
  270. endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +143 -0
  271. endoreg_db/models/media/video/video_file_meta/text_meta.py +134 -0
  272. endoreg_db/models/media/video/video_file_meta/video_meta.py +70 -0
  273. endoreg_db/models/media/video/video_file_meta.py +11 -0
  274. endoreg_db/models/media/video/video_file_segments.py +209 -0
  275. endoreg_db/models/medical/__init__.py +146 -0
  276. endoreg_db/models/{contraindication → medical/contraindication}/__init__.py +1 -5
  277. endoreg_db/models/medical/disease.py +156 -0
  278. endoreg_db/models/medical/event.py +137 -0
  279. endoreg_db/models/{examination → medical/examination}/__init__.py +1 -1
  280. endoreg_db/models/medical/examination/examination.py +148 -0
  281. endoreg_db/models/medical/examination/examination_indication.py +278 -0
  282. endoreg_db/models/{examination → medical/examination}/examination_time.py +0 -4
  283. endoreg_db/models/{examination → medical/examination}/examination_time_type.py +1 -8
  284. endoreg_db/models/{examination → medical/examination}/examination_type.py +18 -10
  285. endoreg_db/models/medical/finding/__init__.py +18 -0
  286. endoreg_db/models/medical/finding/finding.py +96 -0
  287. endoreg_db/models/medical/finding/finding_classification.py +142 -0
  288. endoreg_db/models/{finding → medical/finding}/finding_intervention.py +2 -10
  289. endoreg_db/models/medical/finding/finding_type.py +35 -0
  290. endoreg_db/models/medical/hardware/__init__.py +8 -0
  291. endoreg_db/models/{hardware → medical/hardware}/endoscope.py +28 -23
  292. endoreg_db/models/medical/laboratory/__init__.py +5 -0
  293. endoreg_db/models/medical/laboratory/lab_value.py +419 -0
  294. endoreg_db/models/{medication → medical/medication}/medication.py +1 -3
  295. endoreg_db/models/{medication → medical/medication}/medication_indication_type.py +8 -3
  296. endoreg_db/models/{medication → medical/medication}/medication_intake_time.py +21 -3
  297. endoreg_db/models/{medication → medical/medication}/medication_schedule.py +13 -5
  298. endoreg_db/models/{organ → medical/organ}/__init__.py +3 -6
  299. endoreg_db/models/medical/patient/__init__.py +56 -0
  300. endoreg_db/models/medical/patient/medication_examples.py +38 -0
  301. endoreg_db/models/medical/patient/patient_disease.py +63 -0
  302. endoreg_db/models/medical/patient/patient_event.py +75 -0
  303. endoreg_db/models/medical/patient/patient_examination.py +249 -0
  304. endoreg_db/models/{persons → medical}/patient/patient_examination_indication.py +21 -9
  305. endoreg_db/models/medical/patient/patient_finding.py +357 -0
  306. endoreg_db/models/medical/patient/patient_finding_classification.py +207 -0
  307. endoreg_db/models/{patient → medical/patient}/patient_finding_intervention.py +15 -1
  308. endoreg_db/models/medical/patient/patient_lab_sample.py +148 -0
  309. endoreg_db/models/{persons → medical}/patient/patient_lab_value.py +40 -15
  310. endoreg_db/models/medical/patient/patient_medication.py +104 -0
  311. endoreg_db/models/medical/patient/patient_medication_schedule.py +136 -0
  312. endoreg_db/models/medical/risk/__init__.py +7 -0
  313. endoreg_db/models/medical/risk/risk.py +72 -0
  314. endoreg_db/models/medical/risk/risk_type.py +51 -0
  315. endoreg_db/models/{data_file/metadata → metadata}/__init__.py +6 -0
  316. endoreg_db/models/metadata/frame_ocr_result.py +0 -0
  317. endoreg_db/models/metadata/model_meta.py +193 -0
  318. endoreg_db/models/metadata/model_meta_logic.py +236 -0
  319. endoreg_db/models/{data_file/metadata → metadata}/pdf_meta.py +28 -13
  320. endoreg_db/models/metadata/sensitive_meta.py +288 -0
  321. endoreg_db/models/metadata/sensitive_meta_logic.py +643 -0
  322. endoreg_db/models/metadata/video_meta.py +332 -0
  323. endoreg_db/models/metadata/video_prediction_logic.py +190 -0
  324. endoreg_db/models/metadata/video_prediction_meta.py +270 -0
  325. endoreg_db/models/other/__init__.py +17 -0
  326. endoreg_db/models/other/distribution/date_value_distribution.py +0 -2
  327. endoreg_db/models/other/distribution/numeric_value_distribution.py +30 -2
  328. endoreg_db/models/{emission → other/emission}/emission_factor.py +15 -6
  329. endoreg_db/models/{persons → other}/gender.py +8 -3
  330. endoreg_db/models/other/information_source.py +159 -0
  331. endoreg_db/models/other/material.py +10 -2
  332. endoreg_db/models/other/resource.py +6 -2
  333. endoreg_db/models/other/tag.py +27 -0
  334. endoreg_db/models/other/transport_route.py +13 -2
  335. endoreg_db/models/{unit.py → other/unit.py} +16 -6
  336. endoreg_db/models/other/waste.py +10 -3
  337. endoreg_db/models/requirement/__init__.py +11 -0
  338. endoreg_db/models/requirement/requirement.py +767 -0
  339. endoreg_db/models/requirement/requirement_evaluation/__init__.py +6 -0
  340. endoreg_db/models/requirement/requirement_evaluation/get_values.py +40 -0
  341. endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +9 -0
  342. endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +95 -0
  343. endoreg_db/models/requirement/requirement_operator.py +176 -0
  344. endoreg_db/models/requirement/requirement_set.py +287 -0
  345. endoreg_db/models/rule/__init__.py +13 -0
  346. endoreg_db/models/{rules → rule}/rule.py +6 -3
  347. endoreg_db/models/{rules → rule}/rule_attribute_dtype.py +0 -2
  348. endoreg_db/models/{rules → rule}/rule_type.py +0 -2
  349. endoreg_db/models/{rules → rule}/ruleset.py +0 -2
  350. endoreg_db/models/state/__init__.py +12 -0
  351. endoreg_db/models/state/abstract.py +11 -0
  352. endoreg_db/models/state/audit_ledger.py +150 -0
  353. endoreg_db/models/state/label_video_segment.py +22 -0
  354. endoreg_db/models/state/raw_pdf.py +187 -0
  355. endoreg_db/models/state/sensitive_meta.py +46 -0
  356. endoreg_db/models/state/video.py +232 -0
  357. endoreg_db/models/upload_job.py +99 -0
  358. endoreg_db/models/utils.py +135 -0
  359. endoreg_db/models/video_metadata.py +66 -0
  360. endoreg_db/models/video_processing.py +153 -0
  361. endoreg_db/renames.yml +8 -0
  362. endoreg_db/root_urls.py +9 -0
  363. endoreg_db/schemas/__init__.py +0 -0
  364. endoreg_db/schemas/examination_evaluation.py +27 -0
  365. endoreg_db/serializers/Frames_NICE_and_PARIS_classifications.py +775 -0
  366. endoreg_db/serializers/__init__.py +147 -10
  367. endoreg_db/serializers/{raw_pdf_meta_validation.py → _old/raw_pdf_meta_validation.py} +3 -3
  368. endoreg_db/serializers/{raw_video_meta_validation.py → _old/raw_video_meta_validation.py} +18 -14
  369. endoreg_db/serializers/_old/video.py +71 -0
  370. endoreg_db/serializers/administration/__init__.py +14 -0
  371. endoreg_db/serializers/administration/ai/__init__.py +10 -0
  372. endoreg_db/serializers/administration/ai/active_model.py +10 -0
  373. endoreg_db/serializers/administration/ai/ai_model.py +18 -0
  374. endoreg_db/serializers/administration/ai/model_type.py +10 -0
  375. endoreg_db/serializers/administration/center.py +9 -0
  376. endoreg_db/serializers/administration/gender.py +9 -0
  377. endoreg_db/serializers/anonymization.py +66 -0
  378. endoreg_db/serializers/evaluation/examination_evaluation.py +1 -0
  379. endoreg_db/serializers/examination/__init__.py +10 -0
  380. endoreg_db/serializers/examination/base.py +46 -0
  381. endoreg_db/serializers/examination/dropdown.py +21 -0
  382. endoreg_db/serializers/examination_serializer.py +12 -0
  383. endoreg_db/serializers/finding/__init__.py +5 -0
  384. endoreg_db/serializers/finding/finding.py +54 -0
  385. endoreg_db/serializers/finding_classification/__init__.py +7 -0
  386. endoreg_db/serializers/finding_classification/choice.py +19 -0
  387. endoreg_db/serializers/finding_classification/classification.py +13 -0
  388. endoreg_db/serializers/label/__init__.py +7 -0
  389. endoreg_db/serializers/label/image_classification_annotation.py +62 -0
  390. endoreg_db/serializers/label/label.py +15 -0
  391. endoreg_db/serializers/label_video_segment/__init__.py +7 -0
  392. endoreg_db/serializers/label_video_segment/_lvs_create.py +149 -0
  393. endoreg_db/serializers/label_video_segment/_lvs_update.py +138 -0
  394. endoreg_db/serializers/label_video_segment/_lvs_validate.py +149 -0
  395. endoreg_db/serializers/label_video_segment/label_video_segment.py +344 -0
  396. endoreg_db/serializers/label_video_segment/label_video_segment_annotation.py +99 -0
  397. endoreg_db/serializers/label_video_segment/label_video_segment_update.py +163 -0
  398. endoreg_db/serializers/meta/__init__.py +19 -0
  399. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +115 -0
  400. endoreg_db/serializers/meta/report_meta.py +53 -0
  401. endoreg_db/serializers/meta/sensitive_meta_detail.py +162 -0
  402. endoreg_db/serializers/meta/sensitive_meta_update.py +148 -0
  403. endoreg_db/serializers/meta/sensitive_meta_verification.py +59 -0
  404. endoreg_db/serializers/meta/video_meta.py +39 -0
  405. endoreg_db/serializers/misc/__init__.py +14 -0
  406. endoreg_db/serializers/misc/file_overview.py +152 -0
  407. endoreg_db/serializers/misc/stats.py +33 -0
  408. endoreg_db/serializers/misc/translatable_field_mix_in.py +44 -0
  409. endoreg_db/serializers/misc/upload_job.py +71 -0
  410. endoreg_db/serializers/misc/vop_patient_data.py +120 -0
  411. endoreg_db/serializers/patient/__init__.py +11 -0
  412. endoreg_db/serializers/patient/patient.py +86 -0
  413. endoreg_db/serializers/patient/patient_dropdown.py +27 -0
  414. endoreg_db/serializers/patient_examination/__init__.py +7 -0
  415. endoreg_db/serializers/patient_examination/patient_examination.py +141 -0
  416. endoreg_db/serializers/patient_finding/__init__.py +15 -0
  417. endoreg_db/serializers/patient_finding/patient_finding.py +31 -0
  418. endoreg_db/serializers/patient_finding/patient_finding_classification.py +39 -0
  419. endoreg_db/serializers/patient_finding/patient_finding_detail.py +53 -0
  420. endoreg_db/serializers/patient_finding/patient_finding_intervention.py +26 -0
  421. endoreg_db/serializers/patient_finding/patient_finding_list.py +41 -0
  422. endoreg_db/serializers/patient_finding/patient_finding_write.py +126 -0
  423. endoreg_db/serializers/pdf/__init__.py +5 -0
  424. endoreg_db/serializers/pdf/anony_text_validation.py +85 -0
  425. endoreg_db/serializers/report/__init__.py +9 -0
  426. endoreg_db/serializers/report/mixins.py +45 -0
  427. endoreg_db/serializers/report/report.py +105 -0
  428. endoreg_db/serializers/report/report_list.py +22 -0
  429. endoreg_db/serializers/report/secure_file_url.py +26 -0
  430. endoreg_db/serializers/requirements/requirement_schema.py +25 -0
  431. endoreg_db/serializers/requirements/requirement_sets.py +29 -0
  432. endoreg_db/serializers/sensitive_meta_serializer.py +282 -0
  433. endoreg_db/serializers/video/__init__.py +7 -0
  434. endoreg_db/serializers/video/segmentation.py +263 -0
  435. endoreg_db/serializers/video/video_file_brief.py +10 -0
  436. endoreg_db/serializers/video/video_file_detail.py +83 -0
  437. endoreg_db/serializers/video/video_file_list.py +67 -0
  438. endoreg_db/serializers/video/video_metadata.py +105 -0
  439. endoreg_db/serializers/video/video_processing_history.py +153 -0
  440. endoreg_db/services/__init__.py +5 -0
  441. endoreg_db/services/anonymization.py +223 -0
  442. endoreg_db/services/examination_evaluation.py +149 -0
  443. endoreg_db/services/finding_description_service.py +0 -0
  444. endoreg_db/services/lookup_service.py +241 -0
  445. endoreg_db/services/lookup_store.py +122 -0
  446. endoreg_db/services/ollama_api_docs.py +1528 -0
  447. endoreg_db/services/pdf_import.py +993 -0
  448. endoreg_db/services/polling_coordinator.py +288 -0
  449. endoreg_db/services/pseudonym_service.py +89 -0
  450. endoreg_db/services/requirements_object.py +147 -0
  451. endoreg_db/services/segment_sync.py +155 -0
  452. endoreg_db/services/storage_aware_video_processor.py +344 -0
  453. endoreg_db/services/video_import.py +915 -0
  454. endoreg_db/tasks/upload_tasks.py +207 -0
  455. endoreg_db/tasks/video_ingest.py +157 -0
  456. endoreg_db/tasks/video_processing_tasks.py +327 -0
  457. endoreg_db/urls/__init__.py +72 -0
  458. endoreg_db/urls/anonymization.py +32 -0
  459. endoreg_db/urls/auth.py +16 -0
  460. endoreg_db/urls/classification.py +39 -0
  461. endoreg_db/urls/examination.py +54 -0
  462. endoreg_db/urls/files.py +6 -0
  463. endoreg_db/urls/label_video_segment_validate.py +33 -0
  464. endoreg_db/urls/label_video_segments.py +44 -0
  465. endoreg_db/urls/media.py +32 -0
  466. endoreg_db/urls/patient.py +19 -0
  467. endoreg_db/urls/pdf.py +0 -0
  468. endoreg_db/urls/report.py +78 -0
  469. endoreg_db/urls/requirements.py +13 -0
  470. endoreg_db/urls/sensitive_meta.py +36 -0
  471. endoreg_db/urls/stats.py +46 -0
  472. endoreg_db/urls/upload.py +20 -0
  473. endoreg_db/urls/video.py +119 -0
  474. endoreg_db/urls.py +6 -269
  475. endoreg_db/utils/__init__.py +68 -16
  476. endoreg_db/utils/ai/__init__.py +9 -0
  477. endoreg_db/{models/ai_model/utils.py → utils/ai/get.py} +1 -4
  478. endoreg_db/{models/ai_model/lightning → utils/ai}/inference_dataset.py +0 -1
  479. endoreg_db/{models/ai_model/lightning → utils/ai}/multilabel_classification_net.py +14 -10
  480. endoreg_db/{models/ai_model/lightning → utils/ai}/postprocess.py +15 -5
  481. endoreg_db/utils/ai/predict.py +291 -0
  482. endoreg_db/{models/ai_model/lightning → utils/ai}/preprocess.py +1 -1
  483. endoreg_db/utils/calc_duration_seconds.py +24 -0
  484. endoreg_db/utils/case_generator/__init__.py +0 -0
  485. endoreg_db/utils/check_video_files.py +148 -0
  486. endoreg_db/utils/dataloader.py +88 -31
  487. endoreg_db/utils/dates.py +21 -0
  488. endoreg_db/utils/env.py +33 -0
  489. endoreg_db/utils/extract_specific_frames.py +72 -0
  490. endoreg_db/utils/file_operations.py +29 -1
  491. endoreg_db/utils/fix_video_path_direct.py +141 -0
  492. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  493. endoreg_db/utils/hashs.py +1 -0
  494. endoreg_db/utils/links/__init__.py +0 -0
  495. endoreg_db/utils/links/requirement_link.py +193 -0
  496. endoreg_db/utils/mime_types.py +0 -0
  497. endoreg_db/utils/names.py +2 -0
  498. endoreg_db/utils/paths.py +104 -0
  499. endoreg_db/utils/permissions.py +143 -0
  500. endoreg_db/utils/pipelines/Readme.md +235 -0
  501. endoreg_db/utils/pipelines/__init__.py +0 -0
  502. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  503. endoreg_db/utils/product/__init__.py +0 -0
  504. endoreg_db/utils/product/sum_emissions.py +20 -0
  505. endoreg_db/utils/product/sum_weights.py +18 -0
  506. endoreg_db/utils/pydantic_models/db_config.py +1 -1
  507. endoreg_db/utils/requirement_helpers.py +0 -0
  508. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  509. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  510. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  511. endoreg_db/utils/translation.py +27 -0
  512. endoreg_db/utils/validate_video_detailed.py +357 -0
  513. endoreg_db/utils/video/__init__.py +19 -6
  514. endoreg_db/utils/video/extract_frames.py +37 -70
  515. endoreg_db/utils/video/ffmpeg_wrapper.py +772 -0
  516. endoreg_db/utils/video/names.py +42 -0
  517. endoreg_db/utils/video/streaming_processor.py +312 -0
  518. endoreg_db/utils/video/video_splitter.py +94 -0
  519. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  520. endoreg_db/views/__init__.py +282 -2
  521. endoreg_db/views/anonymization/__init__.py +27 -0
  522. endoreg_db/views/anonymization/media_management.py +454 -0
  523. endoreg_db/views/anonymization/overview.py +216 -0
  524. endoreg_db/views/anonymization/validate.py +63 -0
  525. endoreg_db/views/auth/__init__.py +13 -0
  526. endoreg_db/views/auth/keycloak.py +113 -0
  527. endoreg_db/views/examination/__init__.py +33 -0
  528. endoreg_db/views/examination/examination.py +37 -0
  529. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  530. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  531. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  532. endoreg_db/views/examination/get_findings.py +41 -0
  533. endoreg_db/views/examination/get_instruments.py +18 -0
  534. endoreg_db/views/examination/get_interventions.py +14 -0
  535. endoreg_db/views/finding/__init__.py +9 -0
  536. endoreg_db/views/finding/finding.py +112 -0
  537. endoreg_db/views/finding/get_classifications.py +14 -0
  538. endoreg_db/views/finding/get_interventions.py +17 -0
  539. endoreg_db/views/finding_classification/__init__.py +13 -0
  540. endoreg_db/views/finding_classification/base.py +0 -0
  541. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  542. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  543. endoreg_db/views/label/__init__.py +5 -0
  544. endoreg_db/views/label/label.py +15 -0
  545. endoreg_db/views/label_video_segment/__init__.py +16 -0
  546. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  547. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  548. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  549. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  550. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  551. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  552. endoreg_db/views/label_video_segment/validate.py +226 -0
  553. endoreg_db/views/media/__init__.py +9 -0
  554. endoreg_db/views/media/pdf_media.py +386 -0
  555. endoreg_db/views/media/video_media.py +272 -0
  556. endoreg_db/views/meta/__init__.py +15 -0
  557. endoreg_db/views/meta/available_files_list.py +146 -0
  558. endoreg_db/views/meta/report_meta.py +53 -0
  559. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  560. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  561. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  562. endoreg_db/views/misc/__init__.py +63 -0
  563. endoreg_db/views/misc/center.py +13 -0
  564. endoreg_db/views/misc/gender.py +14 -0
  565. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  566. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  567. endoreg_db/views/misc/secure_url_validate.py +79 -0
  568. endoreg_db/views/misc/stats.py +220 -0
  569. endoreg_db/views/misc/translation.py +182 -0
  570. endoreg_db/views/misc/upload_views.py +240 -0
  571. endoreg_db/views/patient/__init__.py +5 -0
  572. endoreg_db/views/patient/patient.py +210 -0
  573. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  574. endoreg_db/views/patient_examination/__init__.py +11 -0
  575. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  576. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  577. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  578. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  579. endoreg_db/views/patient_examination/video.py +194 -0
  580. endoreg_db/views/patient_finding/__init__.py +7 -0
  581. endoreg_db/views/patient_finding/base.py +0 -0
  582. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  583. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  584. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  585. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  586. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  587. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  588. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  589. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  590. endoreg_db/views/pdf/__init__.py +11 -0
  591. endoreg_db/views/pdf/pdf_media.py +239 -0
  592. endoreg_db/views/pdf/pdf_stream_views.py +127 -0
  593. endoreg_db/views/pdf/reimport.py +151 -0
  594. endoreg_db/views/report/__init__.py +9 -0
  595. endoreg_db/views/report/report_list.py +112 -0
  596. endoreg_db/views/report/report_with_secure_url.py +28 -0
  597. endoreg_db/views/report/start_examination.py +7 -0
  598. endoreg_db/views/requirement/__init__.py +10 -0
  599. endoreg_db/views/requirement/evaluate.py +279 -0
  600. endoreg_db/views/requirement/lookup.py +483 -0
  601. endoreg_db/views/requirement/lookup_store.py +252 -0
  602. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  603. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  604. endoreg_db/views/stats/__init__.py +13 -0
  605. endoreg_db/views/stats/stats_views.py +229 -0
  606. endoreg_db/views/video/__init__.py +72 -0
  607. endoreg_db/views/video/correction.py +672 -0
  608. endoreg_db/views/video/media/__init__.py +23 -0
  609. endoreg_db/views/video/media/task_status.py +49 -0
  610. endoreg_db/views/video/media/video_analyze.py +52 -0
  611. endoreg_db/views/video/media/video_apply_mask.py +48 -0
  612. endoreg_db/views/video/media/video_correction.py +21 -0
  613. endoreg_db/views/video/media/video_download_processed.py +58 -0
  614. endoreg_db/views/video/media/video_media.py +158 -0
  615. endoreg_db/views/video/media/video_meta.py +29 -0
  616. endoreg_db/views/video/media/video_processing_history.py +24 -0
  617. endoreg_db/views/video/media/video_remove_frames.py +48 -0
  618. endoreg_db/views/video/media/video_reprocess.py +40 -0
  619. endoreg_db/views/video/reimport.py +192 -0
  620. endoreg_db/views/video/segmentation.py +274 -0
  621. endoreg_db/views/{views_for_timeline.py → video/timeline.py} +3 -3
  622. endoreg_db/views/video/video_examination_viewset.py +329 -0
  623. endoreg_db/views/video/video_stream.py +188 -0
  624. endoreg_db-0.8.1.dist-info/METADATA +384 -0
  625. endoreg_db-0.8.1.dist-info/RECORD +789 -0
  626. endoreg_db/data/agl_service/data.yaml +0 -19
  627. endoreg_db/data/finding_location_classification/colonoscopy.yaml +0 -46
  628. endoreg_db/data/finding_morphology_classification/colonoscopy.yaml +0 -48
  629. endoreg_db/data/finding_morphology_classification_choice/colonoscopy_size.yaml +0 -57
  630. endoreg_db/management/commands/_load_model_template.py +0 -41
  631. endoreg_db/management/commands/delete_all.py +0 -18
  632. endoreg_db/management/commands/fetch_legacy_image_dataset.py +0 -32
  633. endoreg_db/management/commands/fix_auth_permission.py +0 -20
  634. endoreg_db/management/commands/load_active_model_data.py +0 -45
  635. endoreg_db/management/commands/load_g_play_data.py +0 -113
  636. endoreg_db/management/commands/load_logging_data.py +0 -39
  637. endoreg_db/management/commands/load_lx_data.py +0 -64
  638. endoreg_db/management/commands/load_medication_indication_data.py +0 -63
  639. endoreg_db/management/commands/load_medication_indication_type_data.py +0 -41
  640. endoreg_db/management/commands/load_medication_intake_time_data.py +0 -41
  641. endoreg_db/management/commands/load_medication_schedule_data.py +0 -55
  642. endoreg_db/management/commands/load_network_data.py +0 -57
  643. endoreg_db/migrations/0002_alter_frame_image_alter_rawframe_image.py +0 -23
  644. endoreg_db/migrations/0003_alter_frame_image_alter_rawframe_image.py +0 -23
  645. endoreg_db/migrations/0004_alter_rawvideofile_file_alter_video_file.py +0 -25
  646. endoreg_db/migrations/0005_rawvideofile_frame_count_and_more.py +0 -33
  647. endoreg_db/migrations/0006_frame_extracted_rawframe_extracted.py +0 -23
  648. endoreg_db/migrations/0007_rename_pseudo_patient_video_patient_and_more.py +0 -24
  649. endoreg_db/migrations/0008_remove_reportfile_patient_examination_and_more.py +0 -48
  650. endoreg_db/models/ai_model/active_model.py +0 -9
  651. endoreg_db/models/ai_model/ai_model.py +0 -103
  652. endoreg_db/models/ai_model/lightning/__init__.py +0 -3
  653. endoreg_db/models/ai_model/lightning/predict.py +0 -172
  654. endoreg_db/models/ai_model/lightning/prediction_visualizer.py +0 -55
  655. endoreg_db/models/ai_model/lightning/run_visualizer.py +0 -21
  656. endoreg_db/models/ai_model/model_meta.py +0 -250
  657. endoreg_db/models/annotation/__init__.py +0 -32
  658. endoreg_db/models/annotation/anonymized_image_annotation.py +0 -115
  659. endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -117
  660. endoreg_db/models/annotation/image_classification.py +0 -86
  661. endoreg_db/models/annotation/video_segmentation_annotation.py +0 -52
  662. endoreg_db/models/case/__init__.py +0 -1
  663. endoreg_db/models/case/case.py +0 -34
  664. endoreg_db/models/center/center.py +0 -51
  665. endoreg_db/models/center/center_product.py +0 -33
  666. endoreg_db/models/center/center_waste.py +0 -16
  667. endoreg_db/models/data_file/__init__.py +0 -39
  668. endoreg_db/models/data_file/base_classes/__init__.py +0 -7
  669. endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -100
  670. endoreg_db/models/data_file/base_classes/abstract_pdf.py +0 -136
  671. endoreg_db/models/data_file/base_classes/abstract_video.py +0 -807
  672. endoreg_db/models/data_file/base_classes/frame_helpers.py +0 -17
  673. endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +0 -19
  674. endoreg_db/models/data_file/base_classes/utils.py +0 -80
  675. endoreg_db/models/data_file/frame.py +0 -29
  676. endoreg_db/models/data_file/import_classes/__init__.py +0 -18
  677. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
  678. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
  679. endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
  680. endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -260
  681. endoreg_db/models/data_file/import_classes/raw_video.py +0 -288
  682. endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -290
  683. endoreg_db/models/data_file/metadata/video_meta.py +0 -199
  684. endoreg_db/models/data_file/report_file.py +0 -56
  685. endoreg_db/models/data_file/video/__init__.py +0 -11
  686. endoreg_db/models/data_file/video/import_meta.py +0 -25
  687. endoreg_db/models/data_file/video/video.py +0 -196
  688. endoreg_db/models/data_file/video_segment.py +0 -214
  689. endoreg_db/models/disease.py +0 -79
  690. endoreg_db/models/event.py +0 -73
  691. endoreg_db/models/examination/examination.py +0 -67
  692. endoreg_db/models/examination/examination_indication.py +0 -170
  693. endoreg_db/models/finding/__init__.py +0 -11
  694. endoreg_db/models/finding/finding.py +0 -75
  695. endoreg_db/models/finding/finding_location_classification.py +0 -94
  696. endoreg_db/models/finding/finding_morphology_classification.py +0 -89
  697. endoreg_db/models/finding/finding_type.py +0 -22
  698. endoreg_db/models/hardware/__init__.py +0 -2
  699. endoreg_db/models/information_source.py +0 -29
  700. endoreg_db/models/laboratory/__init__.py +0 -1
  701. endoreg_db/models/laboratory/lab_value.py +0 -111
  702. endoreg_db/models/logging/__init__.py +0 -11
  703. endoreg_db/models/logging/agl_service.py +0 -19
  704. endoreg_db/models/logging/base.py +0 -22
  705. endoreg_db/models/logging/log_type.py +0 -23
  706. endoreg_db/models/logging/network_device.py +0 -27
  707. endoreg_db/models/lx/__init__.py +0 -4
  708. endoreg_db/models/lx/client.py +0 -57
  709. endoreg_db/models/lx/identity.py +0 -34
  710. endoreg_db/models/lx/permission.py +0 -18
  711. endoreg_db/models/lx/user.py +0 -16
  712. endoreg_db/models/network/__init__.py +0 -9
  713. endoreg_db/models/network/agl_service.py +0 -38
  714. endoreg_db/models/network/network_device.py +0 -58
  715. endoreg_db/models/network/network_device_type.py +0 -23
  716. endoreg_db/models/other/distribution.py +0 -5
  717. endoreg_db/models/patient/__init__.py +0 -24
  718. endoreg_db/models/patient/patient_examination.py +0 -182
  719. endoreg_db/models/patient/patient_finding.py +0 -143
  720. endoreg_db/models/patient/patient_finding_location.py +0 -120
  721. endoreg_db/models/patient/patient_finding_morphology.py +0 -166
  722. endoreg_db/models/permissions/__init__.py +0 -44
  723. endoreg_db/models/persons/__init__.py +0 -34
  724. endoreg_db/models/persons/examiner/__init__.py +0 -2
  725. endoreg_db/models/persons/examiner/examiner.py +0 -60
  726. endoreg_db/models/persons/examiner/examiner_type.py +0 -2
  727. endoreg_db/models/persons/patient/__init__.py +0 -8
  728. endoreg_db/models/persons/patient/patient.py +0 -389
  729. endoreg_db/models/persons/patient/patient_disease.py +0 -22
  730. endoreg_db/models/persons/patient/patient_event.py +0 -52
  731. endoreg_db/models/persons/patient/patient_lab_sample.py +0 -108
  732. endoreg_db/models/persons/patient/patient_medication.py +0 -59
  733. endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -88
  734. endoreg_db/models/persons/portal_user_information.py +0 -27
  735. endoreg_db/models/prediction/__init__.py +0 -8
  736. endoreg_db/models/prediction/image_classification.py +0 -51
  737. endoreg_db/models/prediction/video_prediction_meta.py +0 -306
  738. endoreg_db/models/product/product.py +0 -110
  739. endoreg_db/models/product/product_group.py +0 -27
  740. endoreg_db/models/product/product_material.py +0 -28
  741. endoreg_db/models/questionnaires/__init__.py +0 -114
  742. endoreg_db/models/quiz/__init__.py +0 -9
  743. endoreg_db/models/quiz/quiz_answer.py +0 -41
  744. endoreg_db/models/quiz/quiz_question.py +0 -54
  745. endoreg_db/models/report_reader/report_reader_config.py +0 -53
  746. endoreg_db/models/rules/__init__.py +0 -5
  747. endoreg_db/queries/get/__init__.py +0 -6
  748. endoreg_db/queries/get/center.py +0 -42
  749. endoreg_db/queries/get/model.py +0 -13
  750. endoreg_db/queries/get/patient.py +0 -14
  751. endoreg_db/queries/get/patient_examination.py +0 -20
  752. endoreg_db/queries/get/report_file.py +0 -33
  753. endoreg_db/queries/get/video.py +0 -31
  754. endoreg_db/serializers/ai_model.py +0 -19
  755. endoreg_db/serializers/annotation.py +0 -14
  756. endoreg_db/serializers/center.py +0 -11
  757. endoreg_db/serializers/examination.py +0 -33
  758. endoreg_db/serializers/frame.py +0 -9
  759. endoreg_db/serializers/hardware.py +0 -21
  760. endoreg_db/serializers/label.py +0 -22
  761. endoreg_db/serializers/patient.py +0 -33
  762. endoreg_db/serializers/prediction.py +0 -10
  763. endoreg_db/serializers/raw_pdf_anony_text_validation.py +0 -137
  764. endoreg_db/serializers/report_file.py +0 -7
  765. endoreg_db/serializers/video.py +0 -20
  766. endoreg_db/serializers/video_segmentation.py +0 -587
  767. endoreg_db/tests.py +0 -3
  768. endoreg_db/utils/legacy_ocr.py +0 -201
  769. endoreg_db/utils/video/transcode_videofile.py +0 -111
  770. endoreg_db/views/patient_views.py +0 -90
  771. endoreg_db/views/raw_pdf_anony_text_validation_views.py +0 -95
  772. endoreg_db/views/raw_pdf_meta_validation_views.py +0 -111
  773. endoreg_db/views/raw_video_meta_validation_views.py +0 -148
  774. endoreg_db/views/report_views.py +0 -96
  775. endoreg_db/views/video_segmentation_views.py +0 -166
  776. endoreg_db-0.6.3.dist-info/METADATA +0 -161
  777. endoreg_db-0.6.3.dist-info/RECORD +0 -435
  778. /endoreg_db/{case_generator/__init__.py → api/serializers/finding_descriptions.py} +0 -0
  779. /endoreg_db/{queries/get/annotation.py → api/views/finding_descriptions.py} +0 -0
  780. /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
  781. /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
  782. /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
  783. /endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +0 -0
  784. /endoreg_db/models/{persons → administration/person}/person.py +0 -0
  785. /endoreg_db/models/{product → administration/product}/__init__.py +0 -0
  786. /endoreg_db/models/{report_reader → media/pdf/report_reader}/__init__.py +0 -0
  787. /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
  788. /endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +0 -0
  789. /endoreg_db/models/{medication → medical/medication}/__init__.py +0 -0
  790. /endoreg_db/models/{medication → medical/medication}/medication_indication.py +0 -0
  791. /endoreg_db/models/{emission → other/emission}/__init__.py +0 -0
  792. /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
  793. /endoreg_db/{case_generator → utils/case_generator}/case_generator.py +0 -0
  794. /endoreg_db/{case_generator → utils/case_generator}/lab_sample_factory.py +0 -0
  795. /endoreg_db/{case_generator → utils/case_generator}/utils.py +0 -0
  796. /endoreg_db/views/{csrf.py → misc/csrf.py} +0 -0
  797. {endoreg_db-0.6.3.dist-info → endoreg_db-0.8.1.dist-info}/WHEEL +0 -0
  798. {endoreg_db-0.6.3.dist-info → endoreg_db-0.8.1.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,672 @@
1
+ """
2
+ Video Correction API Views
3
+
4
+ Provides endpoints for video analysis, masking, frame removal, and processing history.
5
+ Created as part of Phase 1.1: Video Correction API Endpoints.
6
+
7
+ Available Functions from lx_anonymizer (already implemented):
8
+ - FrameCleaner.analyze_video_sensitivity() - Frame analysis
9
+ - FrameCleaner.clean_video() - Complete anonymization
10
+ - FrameCleaner._mask_video() - FFmpeg masking
11
+ - FrameCleaner.remove_frames_from_video() - Frame removal
12
+ - VideoImportService._get_processor_roi_info() - ROI extraction
13
+ """
14
+ from rest_framework.views import APIView
15
+ from rest_framework.response import Response
16
+ from rest_framework import status
17
+ from django.shortcuts import get_object_or_404
18
+ from django.conf import settings
19
+ from pathlib import Path
20
+ import json
21
+ import logging
22
+
23
+ from endoreg_db.models import VideoFile, VideoMetadata, VideoProcessingHistory, LabelVideoSegment
24
+ from endoreg_db.serializers import VideoMetadataSerializer, VideoProcessingHistorySerializer
25
+ from lx_anonymizer import FrameCleaner
26
+
27
+ logger = logging.getLogger(__name__)
28
+
29
+
30
+ def update_segments_after_frame_removal(video: VideoFile, removed_frames: list) -> dict:
31
+ """
32
+ Update LabelVideoSegment frame boundaries after frame removal.
33
+
34
+ This function shifts segment start/end frames based on which frames were removed.
35
+ Segments are deleted if all their frames are removed.
36
+
37
+ Args:
38
+ video: VideoFile instance whose segments should be updated
39
+ removed_frames: List of frame numbers that were removed (sorted)
40
+
41
+ Returns:
42
+ dict: {
43
+ 'segments_updated': int,
44
+ 'segments_deleted': int,
45
+ 'segments_unchanged': int
46
+ }
47
+
48
+ Algorithm:
49
+ For each segment:
50
+ 1. Count frames removed before segment → shift start_frame
51
+ 2. Count frames removed within segment → shift end_frame
52
+ 3. Delete segment if start_frame >= end_frame (all frames removed)
53
+
54
+ Example:
55
+ Original segment: frames 100-200
56
+ Removed frames: [50, 75, 120, 150, 180]
57
+
58
+ Frames before segment (< 100): 2 frames (50, 75)
59
+ Frames within segment (100-200): 3 frames (120, 150, 180)
60
+
61
+ New segment: frames (100-2) to (200-2-3) = 98-195
62
+ """
63
+ if not removed_frames:
64
+ return {'segments_updated': 0, 'segments_deleted': 0, 'segments_unchanged': 0}
65
+
66
+ removed_frames = sorted(set(removed_frames)) # Ensure sorted and unique
67
+ segments = LabelVideoSegment.objects.filter(video=video).order_by('start_frame')
68
+
69
+ segments_updated = 0
70
+ segments_deleted = 0
71
+ segments_unchanged = 0
72
+
73
+ for segment in segments:
74
+ original_start = segment.start_frame
75
+ original_end = segment.end_frame
76
+
77
+ # Count frames removed before this segment
78
+ frames_before = sum(1 for f in removed_frames if f < original_start)
79
+
80
+ # Count frames removed within this segment
81
+ frames_within = sum(1 for f in removed_frames if original_start <= f <= original_end)
82
+
83
+ # Calculate new boundaries
84
+ new_start = original_start - frames_before
85
+ new_end = original_end - frames_before - frames_within
86
+
87
+ # Delete segment if all frames were removed
88
+ if new_start >= new_end:
89
+ logger.info(
90
+ f"Deleting segment {segment.id} (original: {original_start}-{original_end}) "
91
+ f"- all {frames_within} frames removed"
92
+ )
93
+ segment.delete()
94
+ segments_deleted += 1
95
+ elif new_start != original_start or new_end != original_end:
96
+ # Update segment boundaries
97
+ logger.info(
98
+ f"Updating segment {segment.id}: "
99
+ f"{original_start}-{original_end} → {new_start}-{new_end} "
100
+ f"(before: {frames_before}, within: {frames_within})"
101
+ )
102
+ segment.start_frame = new_start
103
+ segment.end_frame = new_end
104
+ segment.save()
105
+ segments_updated += 1
106
+ else:
107
+ # No change needed
108
+ segments_unchanged += 1
109
+
110
+ logger.info(
111
+ f"Segment update complete for video {video.id}: "
112
+ f"{segments_updated} updated, {segments_deleted} deleted, {segments_unchanged} unchanged"
113
+ )
114
+
115
+ return {
116
+ 'segments_updated': segments_updated,
117
+ 'segments_deleted': segments_deleted,
118
+ 'segments_unchanged': segments_unchanged
119
+ }
120
+
121
+
122
+ class VideoMetadataView(APIView):
123
+ """
124
+ GET /api/video-metadata/{id}/
125
+
126
+ Retrieve analysis results for a video.
127
+
128
+ Returns:
129
+ {
130
+ "id": 1,
131
+ "video": 123,
132
+ "sensitive_frame_count": 42,
133
+ "sensitive_ratio": 0.05,
134
+ "sensitive_frame_ids": "[10, 15, 20, ...]",
135
+ "sensitive_frame_ids_list": [10, 15, 20, ...],
136
+ "sensitive_percentage": 5.0,
137
+ "has_analysis": true,
138
+ "analyzed_at": "2025-10-09T10:00:00Z"
139
+ }
140
+ """
141
+
142
+ def get(self, request, id):
143
+ """Get video metadata by video ID."""
144
+ video = get_object_or_404(VideoFile, pk=id)
145
+
146
+ # Get or create metadata record
147
+ metadata, created = VideoMetadata.objects.get_or_create(video=video)
148
+
149
+ serializer = VideoMetadataSerializer(metadata, context={'request': request})
150
+ return Response(serializer.data)
151
+
152
+
153
+ class VideoProcessingHistoryView(APIView):
154
+ """
155
+ GET /api/video-processing-history/{id}/
156
+
157
+ Retrieve processing history for a video.
158
+
159
+ Returns list of processing operations:
160
+ [
161
+ {
162
+ "id": 1,
163
+ "video": 123,
164
+ "operation": "mask_overlay",
165
+ "operation_display": "Mask Overlay",
166
+ "status": "success",
167
+ "status_display": "Success",
168
+ "config": {"mask_type": "device", "device_name": "olympus"},
169
+ "output_file": "/path/to/masked_video.mp4",
170
+ "download_url": "/api/media/processed-videos/123/1/",
171
+ "details": "",
172
+ "task_id": "abc-123-def",
173
+ "created_at": "2025-10-09T10:00:00Z",
174
+ "completed_at": "2025-10-09T10:05:00Z",
175
+ "duration": 300.5,
176
+ "is_complete": true
177
+ },
178
+ ...
179
+ ]
180
+ """
181
+
182
+ def get(self, request, id):
183
+ """Get processing history for a video."""
184
+ video = get_object_or_404(VideoFile, pk=id)
185
+
186
+ # Get all history records, newest first
187
+ history = VideoProcessingHistory.objects.filter(
188
+ video=video
189
+ ).order_by('-created_at')
190
+
191
+ serializer = VideoProcessingHistorySerializer(
192
+ history,
193
+ many=True,
194
+ context={'request': request}
195
+ )
196
+ return Response(serializer.data)
197
+
198
+
199
+ class VideoAnalyzeView(APIView):
200
+ """
201
+ POST /api/video-analyze/{id}/
202
+
203
+ Analyze video for sensitive frames using MiniCPM-o 2.6 or OCR+LLM.
204
+
205
+ Request body (optional):
206
+ {
207
+ "detection_method": "minicpm", // or "ocr_llm", "hybrid"
208
+ "sample_interval": 30 // analyze every Nth frame (default: adaptive)
209
+ }
210
+
211
+ Returns:
212
+ {
213
+ "sensitive_frame_count": 42,
214
+ "total_frames": 840,
215
+ "sensitive_ratio": 0.05,
216
+ "sensitive_frame_ids": [10, 15, 20, ...],
217
+ "sensitive_percentage": 5.0,
218
+ "detection_method": "minicpm",
219
+ "message": "Analysis complete"
220
+ }
221
+ """
222
+
223
+ def post(self, request, id):
224
+ """Analyze video for sensitive content."""
225
+ video = get_object_or_404(VideoFile, pk=id)
226
+
227
+ # Extract parameters
228
+ detection_method = request.data.get('detection_method', 'minicpm')
229
+ sample_interval = request.data.get('sample_interval', None)
230
+
231
+ try:
232
+ # Initialize FrameCleaner with appropriate detection method
233
+ use_minicpm = detection_method in ['minicpm', 'hybrid']
234
+ frame_cleaner = FrameCleaner(use_minicpm=use_minicpm)
235
+
236
+ # Get video path
237
+ video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
238
+
239
+ # Run analysis (uses existing FrameCleaner.analyze_video_sensitivity)
240
+ analysis_result = frame_cleaner.analyze_video_sensitivity(
241
+ video_path=video_path,
242
+ sample_interval=sample_interval
243
+ )
244
+
245
+ # Extract results
246
+ sensitive_frame_ids = analysis_result.get('sensitive_frame_ids', [])
247
+ total_frames = analysis_result.get('total_frames', 0)
248
+ sensitive_count = len(sensitive_frame_ids)
249
+ sensitive_ratio = sensitive_count / total_frames if total_frames > 0 else 0.0
250
+
251
+ # Update or create metadata
252
+ metadata, created = VideoMetadata.objects.update_or_create(
253
+ video=video,
254
+ defaults={
255
+ 'sensitive_frame_count': sensitive_count,
256
+ 'sensitive_ratio': sensitive_ratio,
257
+ 'sensitive_frame_ids': json.dumps(sensitive_frame_ids)
258
+ }
259
+ )
260
+
261
+ # Create processing history record
262
+ VideoProcessingHistory.objects.create(
263
+ video=video,
264
+ operation=VideoProcessingHistory.OPERATION_ANALYSIS,
265
+ status=VideoProcessingHistory.STATUS_SUCCESS,
266
+ config={
267
+ 'detection_method': detection_method,
268
+ 'sample_interval': sample_interval
269
+ },
270
+ details=f"Found {sensitive_count} sensitive frames out of {total_frames} total frames"
271
+ )
272
+
273
+ logger.info(f"Video {id} analyzed: {sensitive_count}/{total_frames} sensitive frames")
274
+
275
+ return Response({
276
+ 'sensitive_frame_count': sensitive_count,
277
+ 'total_frames': total_frames,
278
+ 'sensitive_ratio': sensitive_ratio,
279
+ 'sensitive_frame_ids': sensitive_frame_ids,
280
+ 'sensitive_percentage': sensitive_ratio * 100,
281
+ 'detection_method': detection_method,
282
+ 'message': 'Analysis complete'
283
+ })
284
+
285
+ except Exception as e:
286
+ logger.error(f"Video analysis failed for {id}: {str(e)}", exc_info=True)
287
+
288
+ # Create failure record
289
+ VideoProcessingHistory.objects.create(
290
+ video=video,
291
+ operation=VideoProcessingHistory.OPERATION_ANALYSIS,
292
+ status=VideoProcessingHistory.STATUS_FAILURE,
293
+ config={
294
+ 'detection_method': detection_method,
295
+ 'sample_interval': sample_interval
296
+ },
297
+ details=str(e)
298
+ )
299
+
300
+ return Response(
301
+ {'error': f'Analysis failed: {str(e)}'},
302
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
303
+ )
304
+
305
+
306
+ class VideoApplyMaskView(APIView):
307
+ """
308
+ POST /api/video-apply-mask/{id}/
309
+
310
+ Apply device mask or custom ROI mask to video.
311
+
312
+ Request body:
313
+ {
314
+ "mask_type": "device", // or "custom"
315
+ "device_name": "olympus", // required if mask_type=device
316
+ "roi": { // required if mask_type=custom
317
+ "x": 550,
318
+ "y": 0,
319
+ "width": 1350,
320
+ "height": 1080
321
+ },
322
+ "processing_method": "streaming" // or "direct" (default: streaming)
323
+ }
324
+
325
+ Returns:
326
+ {
327
+ "task_id": "abc-123-def", // Celery task ID (future)
328
+ "output_file": "/path/to/masked_video.mp4",
329
+ "message": "Masking complete",
330
+ "processing_time": 125.5
331
+ }
332
+
333
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
334
+ """
335
+
336
+ def post(self, request, id):
337
+ """Apply masking to video."""
338
+ video = get_object_or_404(VideoFile, pk=id)
339
+
340
+ # Extract parameters
341
+ mask_type = request.data.get('mask_type', 'device')
342
+ device_name = request.data.get('device_name')
343
+ roi = request.data.get('roi')
344
+ processing_method = request.data.get('processing_method', 'streaming')
345
+
346
+ # Validate required parameters
347
+ if mask_type == 'device' and not device_name:
348
+ return Response(
349
+ {'error': 'device_name required for device mask'},
350
+ status=status.HTTP_400_BAD_REQUEST
351
+ )
352
+
353
+ if mask_type == 'custom' and not roi:
354
+ return Response(
355
+ {'error': 'roi required for custom mask'},
356
+ status=status.HTTP_400_BAD_REQUEST
357
+ )
358
+
359
+ # Create processing history record
360
+ history = VideoProcessingHistory.objects.create(
361
+ video=video,
362
+ operation=VideoProcessingHistory.OPERATION_MASKING,
363
+ status=VideoProcessingHistory.STATUS_PENDING,
364
+ config={
365
+ 'mask_type': mask_type,
366
+ 'device_name': device_name,
367
+ 'roi': roi,
368
+ 'processing_method': processing_method
369
+ }
370
+ )
371
+
372
+ try:
373
+ history.mark_running()
374
+
375
+ # Initialize FrameCleaner
376
+ frame_cleaner = FrameCleaner()
377
+
378
+ # Get video paths
379
+ video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
380
+ output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_masked.mp4"
381
+ output_path.parent.mkdir(parents=True, exist_ok=True)
382
+
383
+ # Load or create mask config
384
+ if mask_type == 'device':
385
+ # Load device-specific mask from lx_anonymizer/masks/
386
+ mask_config = frame_cleaner._load_mask(device_name)
387
+ else: # custom
388
+ # Convert ROI to mask config
389
+ mask_config = frame_cleaner._create_mask_config_from_roi(
390
+ endoscope_roi=roi,
391
+ processor_rois=None
392
+ )
393
+
394
+ # Apply mask (uses existing FrameCleaner._mask_video)
395
+ import time
396
+ start_time = time.time()
397
+
398
+ success = frame_cleaner._mask_video(
399
+ input_video=video_path,
400
+ mask_config=mask_config,
401
+ output_video=str(output_path)
402
+ )
403
+
404
+ processing_time = time.time() - start_time
405
+
406
+ if success:
407
+ # Update video record with anonymized file
408
+ video.anonymized_file = f"anonym_videos/{video.uuid}_masked.mp4"
409
+ video.save()
410
+
411
+ # Mark history as success
412
+ history.mark_success(
413
+ output_file=str(output_path),
414
+ details=f"Masking completed in {processing_time:.1f}s"
415
+ )
416
+
417
+ logger.info(f"Video {id} masked successfully: {output_path}")
418
+
419
+ return Response({
420
+ 'task_id': None, # Will be Celery task ID in Phase 1.2
421
+ 'output_file': str(output_path),
422
+ 'message': 'Masking complete',
423
+ 'processing_time': processing_time
424
+ })
425
+ else:
426
+ raise Exception("Masking failed - check FFmpeg logs")
427
+
428
+ except Exception as e:
429
+ logger.error(f"Video masking failed for {id}: {str(e)}", exc_info=True)
430
+
431
+ history.mark_failure(str(e))
432
+
433
+ return Response(
434
+ {'error': f'Masking failed: {str(e)}'},
435
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
436
+ )
437
+
438
+
439
+ class VideoRemoveFramesView(APIView):
440
+ """
441
+ POST /api/video-remove-frames/{id}/
442
+
443
+ Remove specified frames from video.
444
+
445
+ Request body:
446
+ {
447
+ "frame_list": [10, 15, 20, 30], // explicit frame numbers
448
+ // OR
449
+ "frame_ranges": "10-20,30,45-50", // range string
450
+ // OR
451
+ "detection_method": "automatic", // use analysis results
452
+
453
+ "processing_method": "streaming" // or "traditional"
454
+ }
455
+
456
+ Returns:
457
+ {
458
+ "task_id": "abc-123-def",
459
+ "output_file": "/path/to/cleaned_video.mp4",
460
+ "frames_removed": 42,
461
+ "message": "Frame removal complete",
462
+ "processing_time": 180.3
463
+ }
464
+
465
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
466
+ """
467
+
468
+ def post(self, request, id):
469
+ """Remove frames from video."""
470
+ video = get_object_or_404(VideoFile, pk=id)
471
+
472
+ # Extract parameters
473
+ frame_list = request.data.get('frame_list')
474
+ frame_ranges = request.data.get('frame_ranges')
475
+ detection_method = request.data.get('detection_method')
476
+ processing_method = request.data.get('processing_method', 'streaming')
477
+
478
+ # Determine frames to remove
479
+ frames_to_remove = []
480
+
481
+ if frame_list:
482
+ frames_to_remove = frame_list
483
+ elif frame_ranges:
484
+ frames_to_remove = self._parse_frame_ranges(frame_ranges)
485
+ elif detection_method == 'automatic':
486
+ # Use existing analysis results
487
+ try:
488
+ metadata = VideoMetadata.objects.get(video=video)
489
+ if metadata.sensitive_frame_ids:
490
+ frames_to_remove = json.loads(metadata.sensitive_frame_ids)
491
+ else:
492
+ return Response(
493
+ {'error': 'No analysis results available. Run analysis first.'},
494
+ status=status.HTTP_400_BAD_REQUEST
495
+ )
496
+ except VideoMetadata.DoesNotExist:
497
+ return Response(
498
+ {'error': 'Video not analyzed. Run analysis first.'},
499
+ status=status.HTTP_400_BAD_REQUEST
500
+ )
501
+ else:
502
+ return Response(
503
+ {'error': 'Must provide frame_list, frame_ranges, or detection_method=automatic'},
504
+ status=status.HTTP_400_BAD_REQUEST
505
+ )
506
+
507
+ if not frames_to_remove:
508
+ return Response(
509
+ {'error': 'No frames to remove'},
510
+ status=status.HTTP_400_BAD_REQUEST
511
+ )
512
+
513
+ # Create processing history record
514
+ history = VideoProcessingHistory.objects.create(
515
+ video=video,
516
+ operation=VideoProcessingHistory.OPERATION_FRAME_REMOVAL,
517
+ status=VideoProcessingHistory.STATUS_PENDING,
518
+ config={
519
+ 'frames_to_remove': frames_to_remove,
520
+ 'frame_count': len(frames_to_remove),
521
+ 'processing_method': processing_method
522
+ }
523
+ )
524
+
525
+ try:
526
+ history.mark_running()
527
+
528
+ # Initialize FrameCleaner
529
+ frame_cleaner = FrameCleaner()
530
+
531
+ # Get video paths
532
+ video_path = video.raw_file.path if hasattr(video.raw_file, 'path') else str(video.raw_file)
533
+ output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_cleaned.mp4"
534
+ output_path.parent.mkdir(parents=True, exist_ok=True)
535
+
536
+ # Remove frames (uses existing FrameCleaner.remove_frames_from_video)
537
+ import time
538
+ start_time = time.time()
539
+
540
+ success = frame_cleaner.remove_frames_from_video(
541
+ original_video=video_path,
542
+ frames_to_remove=frames_to_remove,
543
+ output_video=str(output_path)
544
+ )
545
+
546
+ processing_time = time.time() - start_time
547
+
548
+ if success:
549
+ # Update video record
550
+ video.anonymized_file = f"anonym_videos/{video.uuid}_cleaned.mp4"
551
+ video.save()
552
+
553
+ # Phase 1.4: Update LabelVideoSegments (shift frame numbers)
554
+ segment_update_result = update_segments_after_frame_removal(video, frames_to_remove)
555
+
556
+ # Mark history as success with segment update info
557
+ details_parts = [
558
+ f"Removed {len(frames_to_remove)} frames in {processing_time:.1f}s"
559
+ ]
560
+ if segment_update_result['segments_updated'] > 0:
561
+ details_parts.append(
562
+ f"Updated {segment_update_result['segments_updated']} segments"
563
+ )
564
+ if segment_update_result['segments_deleted'] > 0:
565
+ details_parts.append(
566
+ f"Deleted {segment_update_result['segments_deleted']} segments (all frames removed)"
567
+ )
568
+
569
+ history.mark_success(
570
+ output_file=str(output_path),
571
+ details="; ".join(details_parts)
572
+ )
573
+
574
+ logger.info(f"Video {id} cleaned: removed {len(frames_to_remove)} frames")
575
+
576
+ return Response({
577
+ 'task_id': None, # Will be Celery task ID in Phase 1.2
578
+ 'output_file': str(output_path),
579
+ 'frames_removed': len(frames_to_remove),
580
+ 'segment_updates': segment_update_result,
581
+ 'message': 'Frame removal complete',
582
+ 'processing_time': processing_time
583
+ })
584
+ else:
585
+ raise Exception("Frame removal failed - check FFmpeg logs")
586
+
587
+ except Exception as e:
588
+ logger.error(f"Frame removal failed for {id}: {str(e)}", exc_info=True)
589
+
590
+ history.mark_failure(str(e))
591
+
592
+ return Response(
593
+ {'error': f'Frame removal failed: {str(e)}'},
594
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
595
+ )
596
+
597
+ def _parse_frame_ranges(self, ranges_str: str) -> list:
598
+ """
599
+ Parse frame ranges string to list of frame numbers.
600
+
601
+ Example: "10-20,30,45-50" -> [10,11,...,20,30,45,...,50]
602
+ """
603
+ frames = []
604
+ for part in ranges_str.split(','):
605
+ part = part.strip()
606
+ if '-' in part:
607
+ start, end = map(int, part.split('-'))
608
+ frames.extend(range(start, end + 1))
609
+ else:
610
+ frames.append(int(part))
611
+ return sorted(set(frames)) # Remove duplicates and sort
612
+
613
+
614
+ class VideoReprocessView(APIView):
615
+ """
616
+ POST /api/video-reprocess/{id}/
617
+
618
+ Re-run entire anonymization pipeline for a video.
619
+
620
+ Request body: {} (empty)
621
+
622
+ Returns:
623
+ {
624
+ "message": "Reprocessing started",
625
+ "status": "processing_anonymization"
626
+ }
627
+
628
+ Note: This resets VideoState and triggers video_import service.
629
+ """
630
+
631
+ def post(self, request, id):
632
+ """Reprocess video through entire anonymization pipeline."""
633
+ video = get_object_or_404(VideoFile, pk=id)
634
+
635
+ try:
636
+ # Create processing history record
637
+ history = VideoProcessingHistory.objects.create(
638
+ video=video,
639
+ operation=VideoProcessingHistory.OPERATION_REPROCESSING,
640
+ status=VideoProcessingHistory.STATUS_PENDING,
641
+ config={}
642
+ )
643
+
644
+ # Reset video state to trigger re-processing
645
+ if hasattr(video, 'state') and video.state:
646
+ video.state.anonymization_status = 'processing_anonymization'
647
+ video.state.save()
648
+
649
+ # Clear previous metadata
650
+ VideoMetadata.objects.filter(video=video).delete()
651
+
652
+ # TODO Phase 1.2: Trigger Celery task for async reprocessing
653
+ # task = reprocess_video_task.delay(video.id)
654
+ # history.task_id = task.id
655
+ # history.save()
656
+
657
+ history.mark_success(details="Reprocessing initiated")
658
+
659
+ logger.info(f"Video {id} reprocessing started")
660
+
661
+ return Response({
662
+ 'message': 'Reprocessing started',
663
+ 'status': 'processing_anonymization'
664
+ })
665
+
666
+ except Exception as e:
667
+ logger.error(f"Reprocessing failed for {id}: {str(e)}", exc_info=True)
668
+
669
+ return Response(
670
+ {'error': f'Reprocessing failed: {str(e)}'},
671
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
672
+ )
@@ -0,0 +1,23 @@
1
+ from .task_status import TaskStatusView
2
+ from .video_analyze import VideoAnalyzeView
3
+ from .video_apply_mask import VideoApplyMaskView
4
+ from .video_correction import VideoCorrectionView
5
+ from .video_download_processed import VideoDownloadProcessedView
6
+ from .video_media import VideoMediaView
7
+ from .video_meta import VideoMetadataView
8
+ from .video_processing_history import VideoProcessingHistoryView
9
+ from .video_remove_frames import VideoRemoveFramesView
10
+ from .video_reprocess import VideoReprocessView
11
+
12
+ __all__ = [
13
+ "TaskStatusView",
14
+ "VideoAnalyzeView",
15
+ "VideoApplyMaskView",
16
+ "VideoCorrectionView",
17
+ "VideoDownloadProcessedView",
18
+ "VideoMediaView",
19
+ "VideoMetadataView",
20
+ "VideoProcessingHistoryView",
21
+ "VideoRemoveFramesView",
22
+ "VideoReprocessView"
23
+ ]