endoreg-db 0.6.3__py3-none-any.whl → 0.8.1__py3-none-any.whl
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- endoreg_db/admin.py +26 -26
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +12 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +26 -0
- endoreg_db/data/ai_model/data.yaml +1 -1
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +20 -1
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/center/data.yaml +13 -12
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/misc.yaml +1 -2
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +2 -2
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +6 -6
- endoreg_db/data/endoscopy_processor/data.yaml +3 -0
- endoreg_db/data/event/cardiology.yaml +0 -13
- endoreg_db/data/examination/examinations/data.yaml +34 -28
- endoreg_db/data/examination/type/data.yaml +12 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +418 -2
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +157 -5
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +8 -44
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_circularity_default.yaml +0 -2
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_nice.yaml +4 -7
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_paris.yaml +0 -8
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_planarity_default.yaml +6 -13
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/{finding_morphology_classification_choice → finding_classification_choice}/colon_lesion_surface_intact_default.yaml +3 -6
- endoreg_db/data/{finding_location_classification_choice/colonoscopy.yaml → finding_classification_choice/colonoscopy_location.yaml} +11 -22
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +26 -121
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +6 -6
- endoreg_db/data/finding_type/data.yaml +23 -10
- endoreg_db/data/gender/data.yaml +8 -1
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/misc.yaml +43 -0
- endoreg_db/data/medication/anticoagulation.yaml +5 -5
- endoreg_db/data/medication/tah.yaml +5 -5
- endoreg_db/data/medication_indication/anticoagulation.yaml +4 -4
- endoreg_db/data/medication_intake_time/base.yaml +4 -4
- endoreg_db/data/names_first/first_names.yaml +3 -0
- endoreg_db/data/pdf_type/data.yaml +27 -10
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +441 -0
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
- endoreg_db/data/requirement_set_type/data.yaml +20 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/unit/concentration.yaml +23 -0
- endoreg_db/data/unit/time.yaml +36 -1
- endoreg_db/exceptions.py +19 -0
- endoreg_db/forms/patient_finding_intervention_form.py +4 -5
- endoreg_db/forms/patient_form.py +7 -6
- endoreg_db/forms/questionnaires/__init__.py +1 -1
- endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +359 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +422 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +2 -7
- endoreg_db/management/commands/load_base_db_data.py +15 -1
- endoreg_db/management/commands/load_center_data.py +46 -21
- endoreg_db/management/commands/load_endoscope_data.py +2 -2
- endoreg_db/management/commands/load_examination_indication_data.py +49 -28
- endoreg_db/management/commands/load_finding_data.py +49 -92
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
- endoreg_db/management/commands/load_information_source.py +13 -7
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_requirement_data.py +180 -0
- endoreg_db/management/commands/load_risk_data.py +56 -0
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/register_ai_model.py +1 -1
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/migrations/0001_initial.py +625 -813
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/models/__init__.py +274 -291
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/{ai_model → administration/ai}/__init__.py +6 -1
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/{ai_model → administration/ai}/model_type.py +6 -1
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +3 -3
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +3 -10
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +2 -4
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
- endoreg_db/models/{center → administration/center}/__init__.py +3 -1
- endoreg_db/models/administration/center/center.py +61 -0
- endoreg_db/models/administration/center/center_product.py +64 -0
- endoreg_db/models/{center → administration/center}/center_resource.py +19 -3
- endoreg_db/models/administration/center/center_shift.py +88 -0
- endoreg_db/models/administration/center/center_waste.py +30 -0
- endoreg_db/models/administration/permissions/__init__.py +44 -0
- endoreg_db/models/administration/person/__init__.py +24 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +35 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
- endoreg_db/models/administration/person/employee/employee_type.py +42 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +54 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
- endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
- endoreg_db/models/administration/person/patient/__init__.py +5 -0
- endoreg_db/models/administration/person/patient/patient.py +460 -0
- endoreg_db/models/administration/person/profession/__init__.py +24 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
- endoreg_db/models/administration/product/product.py +97 -0
- endoreg_db/models/administration/product/product_group.py +39 -0
- endoreg_db/models/administration/product/product_material.py +54 -0
- endoreg_db/models/{product → administration/product}/product_weight.py +9 -0
- endoreg_db/models/{product → administration/product}/reference_product.py +26 -11
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +37 -0
- endoreg_db/models/administration/qualification/qualification_type.py +35 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +69 -0
- endoreg_db/models/administration/shift/shift.py +51 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/label/__init__.py +24 -1
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +84 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
- endoreg_db/models/label/label.py +45 -74
- endoreg_db/models/label/label_set.py +53 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
- endoreg_db/models/label/video_segmentation_label.py +31 -0
- endoreg_db/models/{annotation → label}/video_segmentation_labelset.py +7 -0
- endoreg_db/models/media/__init__.py +14 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +111 -0
- endoreg_db/models/media/pdf/__init__.py +11 -0
- endoreg_db/models/media/pdf/raw_pdf.py +608 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
- endoreg_db/models/media/video/__init__.py +4 -0
- endoreg_db/models/media/video/create_from_file.py +336 -0
- endoreg_db/models/media/video/pipe_1.py +195 -0
- endoreg_db/models/media/video/pipe_2.py +105 -0
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file.py +680 -0
- endoreg_db/models/media/video/video_file_ai.py +443 -0
- endoreg_db/models/media/video/video_file_anonymize.py +348 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/media/video/video_file_io.py +166 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
- endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +39 -0
- endoreg_db/models/media/video/video_file_meta/get_fps.py +147 -0
- endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +143 -0
- endoreg_db/models/media/video/video_file_meta/text_meta.py +134 -0
- endoreg_db/models/media/video/video_file_meta/video_meta.py +70 -0
- endoreg_db/models/media/video/video_file_meta.py +11 -0
- endoreg_db/models/media/video/video_file_segments.py +209 -0
- endoreg_db/models/medical/__init__.py +146 -0
- endoreg_db/models/{contraindication → medical/contraindication}/__init__.py +1 -5
- endoreg_db/models/medical/disease.py +156 -0
- endoreg_db/models/medical/event.py +137 -0
- endoreg_db/models/{examination → medical/examination}/__init__.py +1 -1
- endoreg_db/models/medical/examination/examination.py +148 -0
- endoreg_db/models/medical/examination/examination_indication.py +278 -0
- endoreg_db/models/{examination → medical/examination}/examination_time.py +0 -4
- endoreg_db/models/{examination → medical/examination}/examination_time_type.py +1 -8
- endoreg_db/models/{examination → medical/examination}/examination_type.py +18 -10
- endoreg_db/models/medical/finding/__init__.py +18 -0
- endoreg_db/models/medical/finding/finding.py +96 -0
- endoreg_db/models/medical/finding/finding_classification.py +142 -0
- endoreg_db/models/{finding → medical/finding}/finding_intervention.py +2 -10
- endoreg_db/models/medical/finding/finding_type.py +35 -0
- endoreg_db/models/medical/hardware/__init__.py +8 -0
- endoreg_db/models/{hardware → medical/hardware}/endoscope.py +28 -23
- endoreg_db/models/medical/laboratory/__init__.py +5 -0
- endoreg_db/models/medical/laboratory/lab_value.py +419 -0
- endoreg_db/models/{medication → medical/medication}/medication.py +1 -3
- endoreg_db/models/{medication → medical/medication}/medication_indication_type.py +8 -3
- endoreg_db/models/{medication → medical/medication}/medication_intake_time.py +21 -3
- endoreg_db/models/{medication → medical/medication}/medication_schedule.py +13 -5
- endoreg_db/models/{organ → medical/organ}/__init__.py +3 -6
- endoreg_db/models/medical/patient/__init__.py +56 -0
- endoreg_db/models/medical/patient/medication_examples.py +38 -0
- endoreg_db/models/medical/patient/patient_disease.py +63 -0
- endoreg_db/models/medical/patient/patient_event.py +75 -0
- endoreg_db/models/medical/patient/patient_examination.py +249 -0
- endoreg_db/models/{persons → medical}/patient/patient_examination_indication.py +21 -9
- endoreg_db/models/medical/patient/patient_finding.py +357 -0
- endoreg_db/models/medical/patient/patient_finding_classification.py +207 -0
- endoreg_db/models/{patient → medical/patient}/patient_finding_intervention.py +15 -1
- endoreg_db/models/medical/patient/patient_lab_sample.py +148 -0
- endoreg_db/models/{persons → medical}/patient/patient_lab_value.py +40 -15
- endoreg_db/models/medical/patient/patient_medication.py +104 -0
- endoreg_db/models/medical/patient/patient_medication_schedule.py +136 -0
- endoreg_db/models/medical/risk/__init__.py +7 -0
- endoreg_db/models/medical/risk/risk.py +72 -0
- endoreg_db/models/medical/risk/risk_type.py +51 -0
- endoreg_db/models/{data_file/metadata → metadata}/__init__.py +6 -0
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- endoreg_db/models/{emission → other/emission}/emission_factor.py +15 -6
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- endoreg_db/models/ai_model/model_meta.py +0 -250
- endoreg_db/models/annotation/__init__.py +0 -32
- endoreg_db/models/annotation/anonymized_image_annotation.py +0 -115
- endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -117
- endoreg_db/models/annotation/image_classification.py +0 -86
- endoreg_db/models/annotation/video_segmentation_annotation.py +0 -52
- endoreg_db/models/case/__init__.py +0 -1
- endoreg_db/models/case/case.py +0 -34
- endoreg_db/models/center/center.py +0 -51
- endoreg_db/models/center/center_product.py +0 -33
- endoreg_db/models/center/center_waste.py +0 -16
- endoreg_db/models/data_file/__init__.py +0 -39
- endoreg_db/models/data_file/base_classes/__init__.py +0 -7
- endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -100
- endoreg_db/models/data_file/base_classes/abstract_pdf.py +0 -136
- endoreg_db/models/data_file/base_classes/abstract_video.py +0 -807
- endoreg_db/models/data_file/base_classes/frame_helpers.py +0 -17
- endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +0 -19
- endoreg_db/models/data_file/base_classes/utils.py +0 -80
- endoreg_db/models/data_file/frame.py +0 -29
- endoreg_db/models/data_file/import_classes/__init__.py +0 -18
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_video.py +0 -288
- endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -290
- endoreg_db/models/data_file/metadata/video_meta.py +0 -199
- endoreg_db/models/data_file/report_file.py +0 -56
- endoreg_db/models/data_file/video/__init__.py +0 -11
- endoreg_db/models/data_file/video/import_meta.py +0 -25
- endoreg_db/models/data_file/video/video.py +0 -196
- endoreg_db/models/data_file/video_segment.py +0 -214
- endoreg_db/models/disease.py +0 -79
- endoreg_db/models/event.py +0 -73
- endoreg_db/models/examination/examination.py +0 -67
- endoreg_db/models/examination/examination_indication.py +0 -170
- endoreg_db/models/finding/__init__.py +0 -11
- endoreg_db/models/finding/finding.py +0 -75
- endoreg_db/models/finding/finding_location_classification.py +0 -94
- endoreg_db/models/finding/finding_morphology_classification.py +0 -89
- endoreg_db/models/finding/finding_type.py +0 -22
- endoreg_db/models/hardware/__init__.py +0 -2
- endoreg_db/models/information_source.py +0 -29
- endoreg_db/models/laboratory/__init__.py +0 -1
- endoreg_db/models/laboratory/lab_value.py +0 -111
- endoreg_db/models/logging/__init__.py +0 -11
- endoreg_db/models/logging/agl_service.py +0 -19
- endoreg_db/models/logging/base.py +0 -22
- endoreg_db/models/logging/log_type.py +0 -23
- endoreg_db/models/logging/network_device.py +0 -27
- endoreg_db/models/lx/__init__.py +0 -4
- endoreg_db/models/lx/client.py +0 -57
- endoreg_db/models/lx/identity.py +0 -34
- endoreg_db/models/lx/permission.py +0 -18
- endoreg_db/models/lx/user.py +0 -16
- endoreg_db/models/network/__init__.py +0 -9
- endoreg_db/models/network/agl_service.py +0 -38
- endoreg_db/models/network/network_device.py +0 -58
- endoreg_db/models/network/network_device_type.py +0 -23
- endoreg_db/models/other/distribution.py +0 -5
- endoreg_db/models/patient/__init__.py +0 -24
- endoreg_db/models/patient/patient_examination.py +0 -182
- endoreg_db/models/patient/patient_finding.py +0 -143
- endoreg_db/models/patient/patient_finding_location.py +0 -120
- endoreg_db/models/patient/patient_finding_morphology.py +0 -166
- endoreg_db/models/permissions/__init__.py +0 -44
- endoreg_db/models/persons/__init__.py +0 -34
- endoreg_db/models/persons/examiner/__init__.py +0 -2
- endoreg_db/models/persons/examiner/examiner.py +0 -60
- endoreg_db/models/persons/examiner/examiner_type.py +0 -2
- endoreg_db/models/persons/patient/__init__.py +0 -8
- endoreg_db/models/persons/patient/patient.py +0 -389
- endoreg_db/models/persons/patient/patient_disease.py +0 -22
- endoreg_db/models/persons/patient/patient_event.py +0 -52
- endoreg_db/models/persons/patient/patient_lab_sample.py +0 -108
- endoreg_db/models/persons/patient/patient_medication.py +0 -59
- endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -88
- endoreg_db/models/persons/portal_user_information.py +0 -27
- endoreg_db/models/prediction/__init__.py +0 -8
- endoreg_db/models/prediction/image_classification.py +0 -51
- endoreg_db/models/prediction/video_prediction_meta.py +0 -306
- endoreg_db/models/product/product.py +0 -110
- endoreg_db/models/product/product_group.py +0 -27
- endoreg_db/models/product/product_material.py +0 -28
- endoreg_db/models/questionnaires/__init__.py +0 -114
- endoreg_db/models/quiz/__init__.py +0 -9
- endoreg_db/models/quiz/quiz_answer.py +0 -41
- endoreg_db/models/quiz/quiz_question.py +0 -54
- endoreg_db/models/report_reader/report_reader_config.py +0 -53
- endoreg_db/models/rules/__init__.py +0 -5
- endoreg_db/queries/get/__init__.py +0 -6
- endoreg_db/queries/get/center.py +0 -42
- endoreg_db/queries/get/model.py +0 -13
- endoreg_db/queries/get/patient.py +0 -14
- endoreg_db/queries/get/patient_examination.py +0 -20
- endoreg_db/queries/get/report_file.py +0 -33
- endoreg_db/queries/get/video.py +0 -31
- endoreg_db/serializers/ai_model.py +0 -19
- endoreg_db/serializers/annotation.py +0 -14
- endoreg_db/serializers/center.py +0 -11
- endoreg_db/serializers/examination.py +0 -33
- endoreg_db/serializers/frame.py +0 -9
- endoreg_db/serializers/hardware.py +0 -21
- endoreg_db/serializers/label.py +0 -22
- endoreg_db/serializers/patient.py +0 -33
- endoreg_db/serializers/prediction.py +0 -10
- endoreg_db/serializers/raw_pdf_anony_text_validation.py +0 -137
- endoreg_db/serializers/report_file.py +0 -7
- endoreg_db/serializers/video.py +0 -20
- endoreg_db/serializers/video_segmentation.py +0 -587
- endoreg_db/tests.py +0 -3
- endoreg_db/utils/legacy_ocr.py +0 -201
- endoreg_db/utils/video/transcode_videofile.py +0 -111
- endoreg_db/views/patient_views.py +0 -90
- endoreg_db/views/raw_pdf_anony_text_validation_views.py +0 -95
- endoreg_db/views/raw_pdf_meta_validation_views.py +0 -111
- endoreg_db/views/raw_video_meta_validation_views.py +0 -148
- endoreg_db/views/report_views.py +0 -96
- endoreg_db/views/video_segmentation_views.py +0 -166
- endoreg_db-0.6.3.dist-info/METADATA +0 -161
- endoreg_db-0.6.3.dist-info/RECORD +0 -435
- /endoreg_db/{case_generator/__init__.py → api/serializers/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/annotation.py → api/views/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
- /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
- /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
- /endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +0 -0
- /endoreg_db/models/{persons → administration/person}/person.py +0 -0
- /endoreg_db/models/{product → administration/product}/__init__.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/__init__.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
- /endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +0 -0
- /endoreg_db/models/{medication → medical/medication}/__init__.py +0 -0
- /endoreg_db/models/{medication → medical/medication}/medication_indication.py +0 -0
- /endoreg_db/models/{emission → other/emission}/__init__.py +0 -0
- /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/case_generator.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/lab_sample_factory.py +0 -0
- /endoreg_db/{case_generator → utils/case_generator}/utils.py +0 -0
- /endoreg_db/views/{csrf.py → misc/csrf.py} +0 -0
- {endoreg_db-0.6.3.dist-info → endoreg_db-0.8.1.dist-info}/WHEEL +0 -0
- {endoreg_db-0.6.3.dist-info → endoreg_db-0.8.1.dist-info}/licenses/LICENSE +0 -0
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#!/usr/bin/env python3
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"""
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Comprehensive video file validation script for debugging streaming issues.
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Tests file integrity, codec compatibility, and streaming capabilities.
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"""
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import os
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import sys
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import subprocess
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from pathlib import Path
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import json
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import logging
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# Dynamically determine the Django project path
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# previously resolved to "/home/admin/test/lx-annotate/endoreg-db" (endoreg-db project directory)
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project_path = os.environ.get(
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'ENDOREG_DJANGO_PROJECT_PATH',
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str(Path(__file__).resolve().parent.parent.parent)
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)
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sys.path.insert(0, project_path)
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os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'dev.dev_settings')
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import django
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django.setup()
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from endoreg_db.models import VideoFile
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logger = logging.getLogger(__name__)
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def check_ffmpeg_available():
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"""Check if FFmpeg is available for video analysis."""
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try:
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result = subprocess.run(['ffmpeg', '-version'],
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capture_output=True, text=True, timeout=10)
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return result.returncode == 0
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except (subprocess.TimeoutExpired, FileNotFoundError):
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return False
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def analyze_video_with_ffmpeg(video_path):
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"""
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Use FFmpeg to analyze video file integrity and get detailed information.
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"""
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analysis_result = {
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'file_readable': False,
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'has_video_stream': False,
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'has_audio_stream': False,
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'duration': None,
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'codec': None,
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'resolution': None,
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'frame_count': None,
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'errors': [],
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'warnings': []
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}
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try:
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# First, try to probe the file
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print(f"📊 Analyzing video with FFprobe: {video_path}")
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probe_cmd = [
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'ffprobe', '-v', 'quiet', '-print_format', 'json',
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'-show_format', '-show_streams', str(video_path)
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]
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result = subprocess.run(probe_cmd, capture_output=True, text=True, timeout=30)
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if result.returncode == 0:
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analysis_result['file_readable'] = True
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probe_data = json.loads(result.stdout)
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# Analyze streams
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if 'streams' in probe_data:
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for stream in probe_data['streams']:
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if stream.get('codec_type') == 'video':
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analysis_result['has_video_stream'] = True
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analysis_result['codec'] = stream.get('codec_name')
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analysis_result['resolution'] = f"{stream.get('width', '?')}x{stream.get('height', '?')}"
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analysis_result['frame_count'] = stream.get('nb_frames')
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elif stream.get('codec_type') == 'audio':
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analysis_result['has_audio_stream'] = True
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# Get format info
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if 'format' in probe_data:
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analysis_result['duration'] = float(probe_data['format'].get('duration', 0))
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else:
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analysis_result['errors'].append(f"FFprobe failed: {result.stderr}")
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except subprocess.TimeoutExpired:
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analysis_result['errors'].append("FFprobe timed out - file might be severely corrupted")
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except json.JSONDecodeError:
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analysis_result['errors'].append("FFprobe returned invalid JSON")
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except Exception as e:
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analysis_result['errors'].append(f"FFprobe analysis failed: {e}")
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# Try to validate file integrity
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try:
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print("🔍 Testing video integrity...")
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integrity_cmd = [
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'ffmpeg', '-v', 'error', '-i', str(video_path),
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'-f', 'null', '-', '-t', '5' # Test first 5 seconds
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]
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result = subprocess.run(integrity_cmd, capture_output=True, text=True, timeout=30)
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if result.returncode == 0:
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print("✅ Video integrity test passed")
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else:
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analysis_result['errors'].append(f"Integrity test failed: {result.stderr}")
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except subprocess.TimeoutExpired:
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analysis_result['errors'].append("Integrity test timed out")
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except Exception as e:
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analysis_result['errors'].append(f"Integrity test failed: {e}")
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return analysis_result
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def test_video_streaming_compatibility(video_path):
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"""
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Test if video is compatible with web streaming (H.264 baseline profile recommended).
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"""
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compatibility_result = {
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'web_compatible': False,
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'streaming_friendly': False,
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'needs_conversion': False,
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'recommendations': []
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}
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try:
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# Check codec and profile
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cmd = [
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'ffprobe', '-v', 'quiet', '-select_streams', 'v:0',
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'-show_entries', 'stream=codec_name,profile,level,pix_fmt',
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'-of', 'csv=p=0', str(video_path)
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]
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result = subprocess.run(cmd, capture_output=True, text=True, timeout=15)
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if result.returncode == 0:
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codec_info = result.stdout.strip().split(',')
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if len(codec_info) >= 1:
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codec = codec_info[0]
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if codec == 'h264':
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compatibility_result['web_compatible'] = True
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# Check if moov atom is at the beginning (for streaming)
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moov_cmd = ['ffprobe', '-v', 'quiet', '-show_entries', 'format',
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'-of', 'csv=p=0', str(video_path)]
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moov_result = subprocess.run(moov_cmd, capture_output=True, text=True, timeout=10)
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if 'mov,mp4' in moov_result.stdout:
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compatibility_result['streaming_friendly'] = True
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else:
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compatibility_result['recommendations'].append(
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"Consider re-encoding with 'faststart' flag for better streaming"
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)
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elif codec in ['hevc', 'h265']:
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compatibility_result['recommendations'].append(
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"HEVC/H.265 codec may not be supported in all browsers"
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)
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compatibility_result['needs_conversion'] = True
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else:
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compatibility_result['recommendations'].append(
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f"Codec '{codec}' may not be web-compatible. Consider H.264"
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)
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compatibility_result['needs_conversion'] = True
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except Exception as e:
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compatibility_result['recommendations'].append(f"Could not analyze compatibility: {e}")
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return compatibility_result
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def test_django_video_access(video_id):
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"""
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Test accessing the video through Django ORM and methods.
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"""
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access_result = {
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'orm_accessible': False,
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'has_raw_file': False,
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'has_processed_file': False,
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'active_file_path': None,
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'file_size': 0,
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'errors': []
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}
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try:
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+
video = VideoFile.objects.get(pk=video_id)
|
|
192
|
+
access_result['orm_accessible'] = True
|
|
193
|
+
|
|
194
|
+
# Check raw file
|
|
195
|
+
if hasattr(video, 'raw_file') and video.raw_file:
|
|
196
|
+
try:
|
|
197
|
+
raw_path = video.raw_file.path
|
|
198
|
+
if Path(raw_path).exists():
|
|
199
|
+
access_result['has_raw_file'] = True
|
|
200
|
+
access_result['active_file_path'] = raw_path
|
|
201
|
+
access_result['file_size'] = Path(raw_path).stat().st_size
|
|
202
|
+
except Exception as e:
|
|
203
|
+
access_result['errors'].append(f"Raw file access error: {e}")
|
|
204
|
+
|
|
205
|
+
# Check processed file
|
|
206
|
+
if hasattr(video, 'processed_file') and video.processed_file:
|
|
207
|
+
try:
|
|
208
|
+
processed_path = video.processed_file.path
|
|
209
|
+
if Path(processed_path).exists():
|
|
210
|
+
access_result['has_processed_file'] = True
|
|
211
|
+
if not access_result['active_file_path']:
|
|
212
|
+
access_result['active_file_path'] = processed_path
|
|
213
|
+
access_result['file_size'] = Path(processed_path).stat().st_size
|
|
214
|
+
except Exception as e:
|
|
215
|
+
access_result['errors'].append(f"Processed file access error: {e}")
|
|
216
|
+
|
|
217
|
+
# Test video streaming methods
|
|
218
|
+
try:
|
|
219
|
+
if hasattr(video, 'get_active_file_path'):
|
|
220
|
+
active_path = video.get_active_file_path()
|
|
221
|
+
if active_path and Path(active_path).exists():
|
|
222
|
+
access_result['active_file_path'] = str(active_path)
|
|
223
|
+
access_result['file_size'] = Path(active_path).stat().st_size
|
|
224
|
+
except Exception as e:
|
|
225
|
+
access_result['errors'].append(f"Active file path method error: {e}")
|
|
226
|
+
|
|
227
|
+
except VideoFile.DoesNotExist:
|
|
228
|
+
access_result['errors'].append(f"Video with ID {video_id} not found in database")
|
|
229
|
+
except Exception as e:
|
|
230
|
+
access_result['errors'].append(f"Django access error: {e}")
|
|
231
|
+
|
|
232
|
+
return access_result
|
|
233
|
+
|
|
234
|
+
|
|
235
|
+
def main():
|
|
236
|
+
import argparse
|
|
237
|
+
|
|
238
|
+
parser = argparse.ArgumentParser(description="Comprehensive video file validation script for debugging streaming issues.")
|
|
239
|
+
parser.add_argument('video_id', nargs='?', type=int, default=5, help='ID of the video to validate (default: 5)')
|
|
240
|
+
args = parser.parse_args()
|
|
241
|
+
|
|
242
|
+
video_id = args.video_id
|
|
243
|
+
|
|
244
|
+
print("🎬 COMPREHENSIVE VIDEO VALIDATION")
|
|
245
|
+
print("=" * 50)
|
|
246
|
+
print(f"Testing video ID: {video_id}")
|
|
247
|
+
print()
|
|
248
|
+
|
|
249
|
+
# Test Django access
|
|
250
|
+
print("1️⃣ Testing Django ORM Access...")
|
|
251
|
+
django_result = test_django_video_access(video_id)
|
|
252
|
+
|
|
253
|
+
if django_result['orm_accessible']:
|
|
254
|
+
print("✅ Video found in database")
|
|
255
|
+
print(f"📁 Active file path: {django_result['active_file_path']}")
|
|
256
|
+
print(f"📏 File size: {django_result['file_size'] / (1024*1024):.1f} MB")
|
|
257
|
+
|
|
258
|
+
if django_result['errors']:
|
|
259
|
+
for error in django_result['errors']:
|
|
260
|
+
print(f"⚠️ {error}")
|
|
261
|
+
else:
|
|
262
|
+
print("❌ Video not accessible through Django")
|
|
263
|
+
for error in django_result['errors']:
|
|
264
|
+
print(f"❌ {error}")
|
|
265
|
+
return
|
|
266
|
+
|
|
267
|
+
# Get video file path for further testing
|
|
268
|
+
video_path = django_result['active_file_path']
|
|
269
|
+
if not video_path or not Path(video_path).exists():
|
|
270
|
+
print("❌ No valid video file path found")
|
|
271
|
+
return
|
|
272
|
+
|
|
273
|
+
print("\n2️⃣ Testing File System Access...")
|
|
274
|
+
file_path = Path(video_path)
|
|
275
|
+
print(f"📁 Path: {file_path}")
|
|
276
|
+
print(f"✅ File exists: {file_path.exists()}")
|
|
277
|
+
print(f"📏 Size: {file_path.stat().st_size / (1024*1024):.1f} MB")
|
|
278
|
+
print(f"🔑 Readable: {os.access(file_path, os.R_OK)}")
|
|
279
|
+
|
|
280
|
+
# Check FFmpeg availability
|
|
281
|
+
print("\n3️⃣ Checking FFmpeg Availability...")
|
|
282
|
+
if not check_ffmpeg_available():
|
|
283
|
+
print("❌ FFmpeg not available - cannot perform detailed video analysis")
|
|
284
|
+
print("💡 Install FFmpeg: sudo apt-get install ffmpeg")
|
|
285
|
+
return
|
|
286
|
+
else:
|
|
287
|
+
print("✅ FFmpeg is available")
|
|
288
|
+
|
|
289
|
+
# Analyze video with FFmpeg
|
|
290
|
+
print("\n4️⃣ Video Analysis with FFmpeg...")
|
|
291
|
+
analysis = analyze_video_with_ffmpeg(video_path)
|
|
292
|
+
|
|
293
|
+
if analysis['file_readable']:
|
|
294
|
+
print("✅ File is readable by FFmpeg")
|
|
295
|
+
print(f"🎥 Has video stream: {analysis['has_video_stream']}")
|
|
296
|
+
print(f"🔊 Has audio stream: {analysis['has_audio_stream']}")
|
|
297
|
+
print(f"⏱️ Duration: {analysis['duration']:.2f}s" if analysis['duration'] else "⏱️ Duration: Unknown")
|
|
298
|
+
print(f"🎬 Codec: {analysis['codec'] or 'Unknown'}")
|
|
299
|
+
print(f"📐 Resolution: {analysis['resolution'] or 'Unknown'}")
|
|
300
|
+
print(f"🖼️ Frame count: {analysis['frame_count'] or 'Unknown'}")
|
|
301
|
+
else:
|
|
302
|
+
print("❌ File is NOT readable by FFmpeg")
|
|
303
|
+
|
|
304
|
+
if analysis['errors']:
|
|
305
|
+
print("\n❌ Errors found:")
|
|
306
|
+
for error in analysis['errors']:
|
|
307
|
+
print(f" • {error}")
|
|
308
|
+
|
|
309
|
+
if analysis['warnings']:
|
|
310
|
+
print("\n⚠️ Warnings:")
|
|
311
|
+
for warning in analysis['warnings']:
|
|
312
|
+
print(f" • {warning}")
|
|
313
|
+
|
|
314
|
+
# Test streaming compatibility
|
|
315
|
+
print("\n5️⃣ Testing Web Streaming Compatibility...")
|
|
316
|
+
compatibility = test_video_streaming_compatibility(video_path)
|
|
317
|
+
|
|
318
|
+
print(f"🌐 Web compatible: {compatibility['web_compatible']}")
|
|
319
|
+
print(f"📡 Streaming friendly: {compatibility['streaming_friendly']}")
|
|
320
|
+
print(f"🔄 Needs conversion: {compatibility['needs_conversion']}")
|
|
321
|
+
|
|
322
|
+
if compatibility['recommendations']:
|
|
323
|
+
print("\n💡 Recommendations:")
|
|
324
|
+
for rec in compatibility['recommendations']:
|
|
325
|
+
print(f" • {rec}")
|
|
326
|
+
|
|
327
|
+
# Final diagnosis
|
|
328
|
+
print("\n6️⃣ DIAGNOSIS")
|
|
329
|
+
print("=" * 30)
|
|
330
|
+
|
|
331
|
+
if not analysis['file_readable']:
|
|
332
|
+
print("🔴 CRITICAL: Video file is corrupted or unreadable")
|
|
333
|
+
print("📋 Action: Replace or re-encode the video file")
|
|
334
|
+
elif not analysis['has_video_stream']:
|
|
335
|
+
print("🔴 CRITICAL: No video stream found")
|
|
336
|
+
print("📋 Action: Check if file is actually a video")
|
|
337
|
+
elif not compatibility['web_compatible']:
|
|
338
|
+
print("🟡 WARNING: Video may not be web-compatible")
|
|
339
|
+
print("📋 Action: Consider re-encoding to H.264")
|
|
340
|
+
elif not compatibility['streaming_friendly']:
|
|
341
|
+
print("🟡 WARNING: Video not optimized for streaming")
|
|
342
|
+
print("📋 Action: Re-encode with faststart flag")
|
|
343
|
+
else:
|
|
344
|
+
print("🟢 GOOD: Video appears to be valid and web-compatible")
|
|
345
|
+
print("📋 Issue likely in Django streaming view or network connection")
|
|
346
|
+
|
|
347
|
+
print("\n🔧 Suggested fixes for streaming issues:")
|
|
348
|
+
print("1. Check Django VideoStreamView implementation")
|
|
349
|
+
print("2. Verify file permissions (readable by web server)")
|
|
350
|
+
print("3. Test with a different video file")
|
|
351
|
+
print("4. Check browser developer tools for specific errors")
|
|
352
|
+
print("5. Consider re-encoding the video:")
|
|
353
|
+
print(f" ffmpeg -i '{video_path}' -c:v libx264 -profile:v baseline -level 3.0 -movflags faststart output.mp4")
|
|
354
|
+
|
|
355
|
+
|
|
356
|
+
if __name__ == "__main__":
|
|
357
|
+
main()
|
|
@@ -1,13 +1,26 @@
|
|
|
1
|
-
from .
|
|
2
|
-
|
|
1
|
+
from .video_splitter import split_video
|
|
2
|
+
from .names import get_video_key, identify_video_key, get_video_key_regex_by_examination_alias
|
|
3
|
+
|
|
4
|
+
# Add necessary functions from ffmpeg_wrapper
|
|
5
|
+
from .ffmpeg_wrapper import (
|
|
6
|
+
get_stream_info,
|
|
7
|
+
assemble_video_from_frames,
|
|
8
|
+
transcode_video,
|
|
3
9
|
transcode_videofile_if_required,
|
|
10
|
+
extract_frames as ffmpeg_extract_frames # Alias to avoid potential name clash if 'extract_frames' was used elsewhere directly from __init__
|
|
4
11
|
)
|
|
5
12
|
|
|
6
|
-
from .extract_frames import extract_frames, initialize_frame_objects
|
|
7
13
|
|
|
8
14
|
__all__ = [
|
|
9
|
-
|
|
10
|
-
"
|
|
11
|
-
"
|
|
15
|
+
# Keep existing
|
|
16
|
+
"split_video",
|
|
17
|
+
"get_video_key",
|
|
18
|
+
"identify_video_key",
|
|
19
|
+
"get_video_key_regex_by_examination_alias",
|
|
20
|
+
# Add from ffmpeg_wrapper
|
|
21
|
+
"get_stream_info",
|
|
22
|
+
"assemble_video_from_frames",
|
|
23
|
+
"transcode_video",
|
|
12
24
|
"transcode_videofile_if_required",
|
|
25
|
+
"ffmpeg_extract_frames", # Use the alias if needed
|
|
13
26
|
]
|
|
@@ -5,13 +5,14 @@ from icecream import ic
|
|
|
5
5
|
import subprocess
|
|
6
6
|
from django.db import transaction
|
|
7
7
|
from tqdm import tqdm
|
|
8
|
-
from typing import TYPE_CHECKING, Union, List
|
|
8
|
+
from typing import TYPE_CHECKING, Union, List, Optional
|
|
9
9
|
|
|
10
10
|
if TYPE_CHECKING:
|
|
11
|
-
from
|
|
11
|
+
from ...models.media import VideoFile
|
|
12
12
|
|
|
13
13
|
from django.core.files import File
|
|
14
14
|
import io
|
|
15
|
+
from .ffmpeg_wrapper import extract_frames as ffmpeg_extract_frames
|
|
15
16
|
|
|
16
17
|
|
|
17
18
|
def prepare_bulk_frames(frame_paths: List[Path]):
|
|
@@ -27,80 +28,47 @@ def prepare_bulk_frames(frame_paths: List[Path]):
|
|
|
27
28
|
yield frame_number, file_obj
|
|
28
29
|
|
|
29
30
|
|
|
30
|
-
def extract_frames(
|
|
31
|
-
video
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
ext
|
|
35
|
-
verbose=False,
|
|
36
|
-
) -> List[Path]:
|
|
37
|
-
"""
|
|
38
|
-
Extract frames from the video file and save them to the frame_dir.
|
|
39
|
-
For this, ffmpeg must be available in in the current environment.
|
|
40
|
-
"""
|
|
41
|
-
frame_dir = Path(video.frame_dir)
|
|
42
|
-
ic(f"Extracting frames to {frame_dir}")
|
|
43
|
-
if not frame_dir.exists():
|
|
44
|
-
frame_dir.mkdir(parents=True, exist_ok=True)
|
|
45
|
-
|
|
46
|
-
if not overwrite and len(list(frame_dir.glob(f"*.{ext}"))) > 0:
|
|
47
|
-
video.state_frames_extracted = True # Mark frames as extracted
|
|
48
|
-
extracted_paths = sorted(frame_dir.glob(f"*.{ext}"))
|
|
49
|
-
return extracted_paths
|
|
50
|
-
|
|
51
|
-
video_path = Path(video.file.path).resolve().as_posix()
|
|
52
|
-
|
|
53
|
-
frame_path_string = frame_dir.resolve().as_posix()
|
|
54
|
-
command = [
|
|
55
|
-
"ffmpeg",
|
|
56
|
-
"-i",
|
|
57
|
-
video_path, #
|
|
58
|
-
"-q:v",
|
|
59
|
-
str(quality),
|
|
60
|
-
os.path.join(frame_path_string, f"frame_%07d.{ext}"),
|
|
61
|
-
]
|
|
62
|
-
|
|
63
|
-
# Ensure FFmpeg is available
|
|
64
|
-
if not shutil.which("ffmpeg"):
|
|
65
|
-
raise EnvironmentError(
|
|
66
|
-
"FFmpeg could not be found. Ensure it is installed and in your PATH."
|
|
67
|
-
)
|
|
68
|
-
|
|
69
|
-
# Extract frames from the video file
|
|
70
|
-
# Execute the command
|
|
71
|
-
process = subprocess.Popen(
|
|
72
|
-
command, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True
|
|
73
|
-
)
|
|
74
|
-
stdout_data, stderr_data = process.communicate()
|
|
75
|
-
|
|
76
|
-
if process.returncode != 0:
|
|
77
|
-
raise Exception(f"Error extracting frames: {stderr_data}")
|
|
78
|
-
|
|
79
|
-
if verbose and stdout_data:
|
|
80
|
-
print(stdout_data)
|
|
81
|
-
|
|
82
|
-
# After extracting frames with ffmpeg, parse frame filenames and batch-create
|
|
83
|
-
extracted_paths = sorted(frame_dir.glob(f"*.{ext}"))
|
|
84
|
-
|
|
85
|
-
return extracted_paths
|
|
31
|
+
def extract_frames(video_path: Path, output_dir: Path, quality: int, ext: str = "jpg", fps: Optional[float] = None) -> List[Path]:
|
|
32
|
+
"""Extracts frames from a video file using ffmpeg_wrapper."""
|
|
33
|
+
# Ensure output directory exists
|
|
34
|
+
output_dir.mkdir(parents=True, exist_ok=True)
|
|
35
|
+
return ffmpeg_extract_frames(video_path, output_dir, quality, ext, fps)
|
|
86
36
|
|
|
87
37
|
|
|
88
38
|
def initialize_frame_objects(
|
|
89
|
-
video:
|
|
39
|
+
video: "VideoFile", extracted_paths: List[Path]
|
|
90
40
|
):
|
|
91
41
|
"""
|
|
92
|
-
Initialize frame objects for the extracted frames.
|
|
42
|
+
Initialize frame objects for the extracted frames and update state.
|
|
93
43
|
"""
|
|
94
|
-
|
|
44
|
+
state = video.get_or_create_state()
|
|
45
|
+
# Check state before proceeding
|
|
46
|
+
if state.frames_initialized:
|
|
47
|
+
ic(f"Frames already initialized for video {video.uuid}, skipping.")
|
|
95
48
|
return
|
|
49
|
+
|
|
50
|
+
if not extracted_paths:
|
|
51
|
+
ic(f"No extracted paths provided for video {video.uuid}, cannot initialize frames.")
|
|
52
|
+
return
|
|
53
|
+
|
|
96
54
|
video.frame_count = len(extracted_paths)
|
|
97
55
|
frames_to_create = []
|
|
98
56
|
batch_size = int(os.environ.get("DJANGO_FFMPEG_EXTRACT_FRAME_BATCHSIZE", "500"))
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
)
|
|
57
|
+
|
|
58
|
+
# Prepare frame data (relative paths for storage)
|
|
59
|
+
frame_dir = video.get_frame_dir_path()
|
|
60
|
+
if not frame_dir:
|
|
61
|
+
raise ValueError(f"Frame directory not set for video {video.uuid}")
|
|
62
|
+
|
|
63
|
+
storage_base_path = Path(video._meta.get_field('raw_file').storage.location) # Get storage root
|
|
64
|
+
|
|
65
|
+
for i, path in tqdm(enumerate(extracted_paths, start=1)):
|
|
66
|
+
frame_number = int(path.stem.split("_")[1]) - 1 # Assuming frame_0000001.jpg is frame_number 0
|
|
67
|
+
relative_path = path.relative_to(storage_base_path).as_posix() # Path relative to MEDIA_ROOT
|
|
68
|
+
|
|
69
|
+
# Create Frame instance (without saving yet)
|
|
102
70
|
frame_obj_instance = video.create_frame_object(
|
|
103
|
-
frame_number, image_file=
|
|
71
|
+
frame_number, image_file=relative_path, extracted=True
|
|
104
72
|
)
|
|
105
73
|
frames_to_create.append(frame_obj_instance)
|
|
106
74
|
|
|
@@ -113,9 +81,8 @@ def initialize_frame_objects(
|
|
|
113
81
|
with transaction.atomic():
|
|
114
82
|
video.bulk_create_frames(frames_to_create)
|
|
115
83
|
|
|
116
|
-
|
|
117
|
-
|
|
84
|
+
# Update state and save VideoFile (to save frame_count)
|
|
85
|
+
state.frames_initialized = True
|
|
86
|
+
state.save(update_fields=['frames_initialized'])
|
|
87
|
+
video.save(update_fields=['frame_count']) # Save frame_count on VideoFile
|
|
118
88
|
|
|
119
|
-
frame_dir = extracted_paths[0].parent
|
|
120
|
-
ic(f"Removing frame directory: {frame_dir}")
|
|
121
|
-
shutil.rmtree(frame_dir)
|