endoreg-db 0.5.3__py3-none-any.whl → 0.6.1__py3-none-any.whl
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- endoreg_db/admin.py +90 -1
- endoreg_db/case_generator/case_generator.py +159 -0
- endoreg_db/case_generator/lab_sample_factory.py +33 -0
- endoreg_db/case_generator/utils.py +30 -0
- endoreg_db/data/__init__.py +50 -4
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/{label → ai_model_label}/label/data.yaml +27 -1
- endoreg_db/data/ai_model_label/label-set/data.yaml +21 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +5 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/center/data.yaml +35 -5
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +8 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +8 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
- endoreg_db/data/finding/data.yaml +141 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +138 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_location_classification/colonoscopy.yaml +46 -0
- endoreg_db/data/finding_location_classification_choice/colonoscopy.yaml +240 -0
- endoreg_db/data/finding_morphology_classification/colonoscopy.yaml +48 -0
- endoreg_db/data/finding_morphology_classification_choice/colon_lesion_circularity_default.yaml +34 -0
- endoreg_db/data/finding_morphology_classification_choice/colon_lesion_nice.yaml +20 -0
- endoreg_db/data/finding_morphology_classification_choice/colon_lesion_paris.yaml +65 -0
- endoreg_db/data/finding_morphology_classification_choice/colon_lesion_planarity_default.yaml +56 -0
- endoreg_db/data/finding_morphology_classification_choice/colon_lesion_surface_intact_default.yaml +39 -0
- endoreg_db/data/finding_morphology_classification_choice/colonoscopy_size.yaml +57 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
- endoreg_db/data/finding_type/data.yaml +30 -0
- endoreg_db/data/gender/data.yaml +17 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +7 -1
- endoreg_db/data/lab_value/coagulation.yaml +6 -1
- endoreg_db/data/lab_value/electrolytes.yaml +39 -1
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +12 -0
- endoreg_db/data/lab_value/hematology.yaml +17 -2
- endoreg_db/data/lab_value/hormones.yaml +6 -0
- endoreg_db/data/lab_value/lipids.yaml +12 -3
- endoreg_db/data/lab_value/misc.yaml +5 -2
- endoreg_db/data/lab_value/renal_function.yaml +2 -1
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +44 -49
- endoreg_db/data/names_first/first_names.yaml +51 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +30 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/pdf_type/data.yaml +2 -1
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +4 -0
- endoreg_db/forms/__init__.py +3 -1
- endoreg_db/forms/examination_form.py +11 -0
- endoreg_db/forms/patient_finding_intervention_form.py +19 -0
- endoreg_db/forms/patient_form.py +26 -0
- endoreg_db/management/commands/__init__.py +0 -0
- endoreg_db/management/commands/load_ai_model_data.py +57 -23
- endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
- endoreg_db/management/commands/load_base_db_data.py +160 -118
- endoreg_db/management/commands/{load_endoscope_type_data.py → load_contraindication_data.py} +3 -7
- endoreg_db/management/commands/load_disease_data.py +29 -7
- endoreg_db/management/commands/load_endoscope_data.py +68 -0
- endoreg_db/management/commands/load_examination_indication_data.py +65 -0
- endoreg_db/management/commands/load_finding_data.py +171 -0
- endoreg_db/management/commands/load_lab_value_data.py +3 -3
- endoreg_db/management/commands/load_lx_data.py +64 -0
- endoreg_db/management/commands/load_medication_data.py +83 -21
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/{load_endoscopy_processor_data.py → load_organ_data.py} +7 -9
- endoreg_db/migrations/0001_initial.py +1206 -728
- endoreg_db/migrations/0002_alter_frame_image_alter_rawframe_image.py +23 -0
- endoreg_db/migrations/0003_alter_frame_image_alter_rawframe_image.py +23 -0
- endoreg_db/migrations/0004_alter_rawvideofile_file_alter_video_file.py +25 -0
- endoreg_db/migrations/0005_rawvideofile_frame_count_and_more.py +33 -0
- endoreg_db/migrations/0006_frame_extracted_rawframe_extracted.py +23 -0
- endoreg_db/migrations/0007_rename_pseudo_patient_video_patient_and_more.py +24 -0
- endoreg_db/migrations/0008_remove_reportfile_patient_examination_and_more.py +48 -0
- endoreg_db/models/__init__.py +331 -28
- endoreg_db/models/ai_model/__init__.py +1 -0
- endoreg_db/models/ai_model/ai_model.py +103 -0
- endoreg_db/models/ai_model/lightning/__init__.py +3 -0
- endoreg_db/models/ai_model/lightning/inference_dataset.py +53 -0
- endoreg_db/models/ai_model/lightning/multilabel_classification_net.py +155 -0
- endoreg_db/models/ai_model/lightning/postprocess.py +53 -0
- endoreg_db/models/ai_model/lightning/predict.py +172 -0
- endoreg_db/models/ai_model/lightning/prediction_visualizer.py +55 -0
- endoreg_db/models/ai_model/lightning/preprocess.py +68 -0
- endoreg_db/models/ai_model/lightning/run_visualizer.py +21 -0
- endoreg_db/models/ai_model/model_meta.py +232 -6
- endoreg_db/models/ai_model/model_type.py +13 -3
- endoreg_db/models/annotation/__init__.py +31 -2
- endoreg_db/models/annotation/anonymized_image_annotation.py +73 -18
- endoreg_db/models/annotation/binary_classification_annotation_task.py +94 -57
- endoreg_db/models/annotation/image_classification.py +73 -14
- endoreg_db/models/annotation/video_segmentation_annotation.py +52 -0
- endoreg_db/models/annotation/video_segmentation_labelset.py +20 -0
- endoreg_db/models/case/__init__.py +1 -0
- endoreg_db/models/{persons/patient/case → case}/case.py +4 -0
- endoreg_db/models/case_template/__init__.py +10 -1
- endoreg_db/models/case_template/case_template.py +57 -13
- endoreg_db/models/case_template/case_template_rule.py +5 -5
- endoreg_db/models/case_template/case_template_rule_value.py +19 -4
- endoreg_db/models/center/__init__.py +7 -0
- endoreg_db/models/center/center.py +31 -5
- endoreg_db/models/center/center_product.py +0 -1
- endoreg_db/models/center/center_resource.py +16 -2
- endoreg_db/models/center/center_waste.py +6 -1
- endoreg_db/models/contraindication/__init__.py +21 -0
- endoreg_db/models/data_file/__init__.py +38 -5
- endoreg_db/models/data_file/base_classes/__init__.py +6 -1
- endoreg_db/models/data_file/base_classes/abstract_frame.py +64 -15
- endoreg_db/models/data_file/base_classes/abstract_pdf.py +136 -0
- endoreg_db/models/data_file/base_classes/abstract_video.py +744 -138
- endoreg_db/models/data_file/base_classes/frame_helpers.py +17 -0
- endoreg_db/models/data_file/base_classes/prepare_bulk_frames.py +19 -0
- endoreg_db/models/data_file/base_classes/utils.py +80 -0
- endoreg_db/models/data_file/frame.py +22 -38
- endoreg_db/models/data_file/import_classes/__init__.py +4 -18
- endoreg_db/models/data_file/import_classes/raw_pdf.py +162 -90
- endoreg_db/models/data_file/import_classes/raw_video.py +239 -294
- endoreg_db/models/data_file/metadata/__init__.py +10 -0
- endoreg_db/models/data_file/metadata/pdf_meta.py +4 -0
- endoreg_db/models/data_file/metadata/sensitive_meta.py +265 -6
- endoreg_db/models/data_file/metadata/video_meta.py +116 -50
- endoreg_db/models/data_file/report_file.py +30 -63
- endoreg_db/models/data_file/video/__init__.py +6 -2
- endoreg_db/models/data_file/video/video.py +187 -16
- endoreg_db/models/data_file/video_segment.py +162 -55
- endoreg_db/models/disease.py +25 -2
- endoreg_db/models/emission/__init__.py +5 -1
- endoreg_db/models/emission/emission_factor.py +71 -6
- endoreg_db/models/event.py +51 -0
- endoreg_db/models/examination/__init__.py +6 -1
- endoreg_db/models/examination/examination.py +53 -12
- endoreg_db/models/examination/examination_indication.py +170 -0
- endoreg_db/models/examination/examination_time.py +31 -5
- endoreg_db/models/examination/examination_time_type.py +28 -4
- endoreg_db/models/examination/examination_type.py +28 -6
- endoreg_db/models/finding/__init__.py +11 -0
- endoreg_db/models/finding/finding.py +75 -0
- endoreg_db/models/finding/finding_intervention.py +60 -0
- endoreg_db/models/finding/finding_location_classification.py +94 -0
- endoreg_db/models/finding/finding_morphology_classification.py +89 -0
- endoreg_db/models/finding/finding_type.py +22 -0
- endoreg_db/models/hardware/endoscope.py +16 -0
- endoreg_db/models/hardware/endoscopy_processor.py +31 -19
- endoreg_db/models/label/label.py +35 -7
- endoreg_db/models/laboratory/lab_value.py +12 -3
- endoreg_db/models/logging/__init__.py +8 -1
- endoreg_db/models/lx/__init__.py +4 -0
- endoreg_db/models/lx/client.py +57 -0
- endoreg_db/models/lx/identity.py +34 -0
- endoreg_db/models/lx/permission.py +18 -0
- endoreg_db/models/lx/user.py +16 -0
- endoreg_db/models/medication/__init__.py +19 -1
- endoreg_db/models/medication/medication.py +7 -122
- endoreg_db/models/medication/medication_indication.py +50 -0
- endoreg_db/models/medication/medication_indication_type.py +34 -0
- endoreg_db/models/medication/medication_intake_time.py +26 -0
- endoreg_db/models/medication/medication_schedule.py +37 -0
- endoreg_db/models/network/__init__.py +7 -1
- endoreg_db/models/network/network_device.py +13 -8
- endoreg_db/models/organ/__init__.py +38 -0
- endoreg_db/models/other/__init__.py +19 -1
- endoreg_db/models/other/distribution/__init__.py +44 -0
- endoreg_db/models/other/distribution/base_value_distribution.py +20 -0
- endoreg_db/models/other/distribution/date_value_distribution.py +91 -0
- endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +32 -0
- endoreg_db/models/other/distribution/numeric_value_distribution.py +97 -0
- endoreg_db/models/other/distribution/single_categorical_value_distribution.py +22 -0
- endoreg_db/models/other/distribution.py +1 -211
- endoreg_db/models/other/material.py +4 -0
- endoreg_db/models/other/transport_route.py +2 -1
- endoreg_db/models/patient/__init__.py +24 -0
- endoreg_db/models/patient/patient_examination.py +182 -0
- endoreg_db/models/patient/patient_finding.py +143 -0
- endoreg_db/models/patient/patient_finding_intervention.py +26 -0
- endoreg_db/models/patient/patient_finding_location.py +120 -0
- endoreg_db/models/patient/patient_finding_morphology.py +166 -0
- endoreg_db/models/persons/__init__.py +29 -2
- endoreg_db/models/persons/examiner/examiner.py +48 -4
- endoreg_db/models/persons/patient/__init__.py +1 -1
- endoreg_db/models/persons/patient/patient.py +227 -54
- endoreg_db/models/persons/patient/patient_disease.py +6 -0
- endoreg_db/models/persons/patient/patient_event.py +31 -1
- endoreg_db/models/persons/patient/patient_examination_indication.py +32 -0
- endoreg_db/models/persons/patient/patient_lab_sample.py +4 -2
- endoreg_db/models/persons/patient/patient_lab_value.py +37 -16
- endoreg_db/models/persons/patient/patient_medication.py +27 -12
- endoreg_db/models/persons/patient/patient_medication_schedule.py +62 -2
- endoreg_db/models/prediction/__init__.py +7 -1
- endoreg_db/models/prediction/image_classification.py +20 -6
- endoreg_db/models/prediction/video_prediction_meta.py +151 -89
- endoreg_db/models/product/__init__.py +10 -1
- endoreg_db/models/product/product.py +15 -2
- endoreg_db/models/product/product_group.py +8 -0
- endoreg_db/models/product/product_material.py +4 -0
- endoreg_db/models/product/product_weight.py +12 -0
- endoreg_db/models/product/reference_product.py +19 -3
- endoreg_db/models/quiz/__init__.py +8 -1
- endoreg_db/models/report_reader/__init__.py +6 -1
- endoreg_db/serializers/__init__.py +1 -1
- endoreg_db/serializers/annotation.py +2 -5
- endoreg_db/serializers/frame.py +1 -5
- endoreg_db/serializers/patient.py +26 -3
- endoreg_db/serializers/prediction.py +2 -7
- endoreg_db/serializers/raw_video_meta_validation.py +13 -0
- endoreg_db/serializers/video.py +6 -13
- endoreg_db/serializers/video_segmentation.py +492 -0
- endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
- endoreg_db/templates/admin/start_examination.html +12 -0
- endoreg_db/templates/timeline.html +176 -0
- endoreg_db/urls.py +173 -0
- endoreg_db/utils/__init__.py +36 -1
- endoreg_db/utils/dataloader.py +45 -19
- endoreg_db/utils/dates.py +39 -0
- endoreg_db/utils/hashs.py +122 -4
- endoreg_db/utils/names.py +74 -0
- endoreg_db/utils/parse_and_generate_yaml.py +46 -0
- endoreg_db/utils/pydantic_models/__init__.py +6 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/validate_endo_roi.py +19 -0
- endoreg_db/utils/validate_subcategory_dict.py +91 -0
- endoreg_db/utils/video/__init__.py +13 -0
- endoreg_db/utils/video/extract_frames.py +121 -0
- endoreg_db/utils/video/transcode_videofile.py +111 -0
- endoreg_db/views/__init__.py +2 -0
- endoreg_db/views/csrf.py +7 -0
- endoreg_db/views/patient_views.py +90 -0
- endoreg_db/views/raw_video_meta_validation_views.py +38 -0
- endoreg_db/views/report_views.py +96 -0
- endoreg_db/views/video_segmentation_views.py +149 -0
- endoreg_db/views/views_for_timeline.py +46 -0
- endoreg_db/views.py +0 -3
- endoreg_db-0.6.1.dist-info/METADATA +151 -0
- endoreg_db-0.6.1.dist-info/RECORD +420 -0
- {endoreg_db-0.5.3.dist-info → endoreg_db-0.6.1.dist-info}/WHEEL +1 -1
- endoreg_db/data/active_model/data.yaml +0 -3
- endoreg_db/data/label/label-set/data.yaml +0 -18
- endoreg_db/management/commands/delete_legacy_images.py +0 -19
- endoreg_db/management/commands/delete_legacy_videos.py +0 -17
- endoreg_db/management/commands/extract_legacy_video_frames.py +0 -18
- endoreg_db/management/commands/import_legacy_images.py +0 -94
- endoreg_db/management/commands/import_legacy_videos.py +0 -76
- endoreg_db/management/commands/load_label_data.py +0 -67
- endoreg_db/migrations/0002_anonymizedimagelabel_anonymousimageannotation_and_more.py +0 -55
- endoreg_db/migrations/0003_anonymousimageannotation_original_image_url_and_more.py +0 -39
- endoreg_db/migrations/0004_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0005_uploadedfile_alter_rawpdffile_file_anonymizedfile.py +0 -40
- endoreg_db/migrations/0006_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0007_networkdevicelogentry_datetime_and_more.py +0 -43
- endoreg_db/migrations/0008_networkdevicelogentry_aglnet_ip_and_more.py +0 -28
- endoreg_db/migrations/0009_alter_networkdevicelogentry_vpn_service_status.py +0 -18
- endoreg_db/migrations/0010_remove_networkdevicelogentry_hostname.py +0 -17
- endoreg_db/models/legacy_data/__init__.py +0 -3
- endoreg_db/models/legacy_data/image.py +0 -34
- endoreg_db/models/patient_examination/__init__.py +0 -35
- endoreg_db/utils/video_metadata.py +0 -87
- endoreg_db-0.5.3.dist-info/METADATA +0 -28
- endoreg_db-0.5.3.dist-info/RECORD +0 -319
- /endoreg_db/{models/persons/patient/case → case_generator}/__init__.py +0 -0
- /endoreg_db/data/{label → ai_model_label}/label-type/data.yaml +0 -0
- /endoreg_db/data/{model_type → ai_model_type}/data.yaml +0 -0
- /endoreg_db/{data/distribution/numeric/.init → management/__init__.py} +0 -0
- /endoreg_db/management/commands/{load_report_reader_flag.py → load_report_reader_flag_data.py} +0 -0
- {endoreg_db-0.5.3.dist-info → endoreg_db-0.6.1.dist-info}/licenses/LICENSE +0 -0
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migrations.CreateModel(
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@@ -291,8 +300,9 @@ class Migration(migrations.Migration):
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('image', models.ImageField(blank=True, null=True, upload_to='frames')),
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('is_raw', models.BooleanField(default=False)),
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'abstract': False,
|
|
@@ -330,100 +340,72 @@ class Migration(migrations.Migration):
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],
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migrations.CreateModel(
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name='
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name='LabelType',
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fields=[
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('version', models.IntegerField()),
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('labels', models.ManyToManyField(related_name='labels', to='endoreg_db.label')),
|
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migrations.CreateModel(
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name='
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name='LastName',
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fields=[
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('name', models.CharField(max_length=255, unique=True)),
|
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],
|
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migrations.CreateModel(
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name='
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name='LogType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('normal_range_age_dependent', models.BooleanField(default=False)),
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('normal_range_special_case', models.BooleanField(default=False)),
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('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
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('name', models.CharField(max_length=255)),
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('description', models.CharField(max_length=255)),
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('created', models.DateTimeField(auto_now_add=True)),
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('updated', models.DateTimeField(auto_now=True)),
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],
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options={
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'ordering': ['name'],
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},
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),
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migrations.CreateModel(
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name='
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name='LxClientTag',
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fields=[
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('name', models.CharField(max_length=
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('name', models.CharField(max_length=100, unique=True)),
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('description', models.TextField(blank=True)),
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migrations.CreateModel(
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name='
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name='LxClientType',
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fields=[
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('
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('name', models.CharField(max_length=100, unique=True)),
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('abbreviation', models.CharField(max_length=10, unique=True)),
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('description', models.TextField(blank=True)),
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migrations.CreateModel(
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name='
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+
name='LxIdentityType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('fps', models.FloatField()),
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('duration', models.FloatField()),
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('width', models.IntegerField()),
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('height', models.IntegerField()),
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('endoscope_image_x', models.IntegerField(blank=True, null=True)),
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('endoscope_image_y', models.IntegerField(blank=True, null=True)),
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('endoscope_image_width', models.IntegerField(blank=True, null=True)),
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('endoscope_image_height', models.IntegerField(blank=True, null=True)),
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('frames_extracted', models.BooleanField(default=False)),
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('meta', models.JSONField(blank=True, null=True)),
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('file', models.FileField(blank=True, null=True, upload_to='legacy_videos')),
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('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
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('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
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('name', models.CharField(max_length=100, unique=True)),
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('description', models.TextField(blank=True)),
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],
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options={
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'abstract': False,
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},
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),
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migrations.CreateModel(
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name='
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+
name='LxPermission',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=
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('description', models.
|
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('created', models.DateTimeField(auto_now_add=True)),
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('updated', models.DateTimeField(auto_now=True)),
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+
('name', models.CharField(max_length=100, unique=True)),
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('description', models.TextField(blank=True)),
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],
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options={
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'ordering': ['name'],
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},
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),
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migrations.CreateModel(
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name='
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|
+
name='LxUser',
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|
fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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423
|
-
('name', models.CharField(max_length=
|
|
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|
-
('
|
|
425
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
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426
|
-
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
407
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
408
|
+
('description', models.TextField(blank=True)),
|
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427
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|
],
|
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428
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|
),
|
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429
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|
migrations.CreateModel(
|
|
@@ -441,16 +423,6 @@ class Migration(migrations.Migration):
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441
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('adapt_to_risk', models.BooleanField(default=False)),
|
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|
],
|
|
443
425
|
),
|
|
444
|
-
migrations.CreateModel(
|
|
445
|
-
name='MedicationIndication',
|
|
446
|
-
fields=[
|
|
447
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
448
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
449
|
-
('classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
450
|
-
('diseases', models.ManyToManyField(to='endoreg_db.disease')),
|
|
451
|
-
('events', models.ManyToManyField(to='endoreg_db.event')),
|
|
452
|
-
],
|
|
453
|
-
),
|
|
454
426
|
migrations.CreateModel(
|
|
455
427
|
name='MedicationIndicationType',
|
|
456
428
|
fields=[
|
|
@@ -472,41 +444,15 @@ class Migration(migrations.Migration):
|
|
|
472
444
|
],
|
|
473
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|
),
|
|
474
446
|
migrations.CreateModel(
|
|
475
|
-
name='
|
|
447
|
+
name='ModelType',
|
|
476
448
|
fields=[
|
|
477
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|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
478
450
|
('name', models.CharField(max_length=255)),
|
|
479
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
480
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
481
451
|
('description', models.TextField(blank=True, null=True)),
|
|
482
|
-
('therapy_duration_d', models.FloatField(blank=True, null=True)),
|
|
483
|
-
('dose', models.FloatField()),
|
|
484
|
-
('intake_times', models.ManyToManyField(to='endoreg_db.medicationintaketime')),
|
|
485
|
-
('medication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.medication')),
|
|
486
452
|
],
|
|
487
453
|
),
|
|
488
454
|
migrations.CreateModel(
|
|
489
|
-
name='
|
|
490
|
-
fields=[
|
|
491
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
492
|
-
('name', models.CharField(max_length=255)),
|
|
493
|
-
('version', models.CharField(max_length=255)),
|
|
494
|
-
('weights', models.FileField(upload_to='weights/')),
|
|
495
|
-
('description', models.TextField(blank=True, null=True)),
|
|
496
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
497
|
-
('labelset', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.labelset')),
|
|
498
|
-
],
|
|
499
|
-
),
|
|
500
|
-
migrations.CreateModel(
|
|
501
|
-
name='ModelType',
|
|
502
|
-
fields=[
|
|
503
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
504
|
-
('name', models.CharField(max_length=255)),
|
|
505
|
-
('description', models.TextField(blank=True, null=True)),
|
|
506
|
-
],
|
|
507
|
-
),
|
|
508
|
-
migrations.CreateModel(
|
|
509
|
-
name='MultipleCategoricalValueDistribution',
|
|
455
|
+
name='MultipleCategoricalValueDistribution',
|
|
510
456
|
fields=[
|
|
511
457
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
512
458
|
('name', models.CharField(max_length=100)),
|
|
@@ -557,41 +503,13 @@ class Migration(migrations.Migration):
|
|
|
557
503
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
558
504
|
('name', models.CharField(max_length=100)),
|
|
559
505
|
('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal'), ('skewed_normal', 'Skewed Normal')], max_length=20)),
|
|
560
|
-
('
|
|
561
|
-
('
|
|
562
|
-
('mean', models.FloatField(blank=True, null=True)),
|
|
563
|
-
('std_dev', models.FloatField(blank=True, null=True)),
|
|
564
|
-
('skewness', models.FloatField(blank=True, null=True)),
|
|
565
|
-
],
|
|
566
|
-
options={
|
|
567
|
-
'abstract': False,
|
|
568
|
-
},
|
|
569
|
-
),
|
|
570
|
-
migrations.CreateModel(
|
|
571
|
-
name='Patient',
|
|
572
|
-
fields=[
|
|
573
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
574
|
-
('first_name', models.CharField(max_length=255)),
|
|
575
|
-
('last_name', models.CharField(max_length=255)),
|
|
576
|
-
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
577
|
-
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
578
|
-
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
579
|
-
('is_real_person', models.BooleanField(default=True)),
|
|
580
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
581
|
-
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
506
|
+
('min_descriptor', models.CharField(max_length=20)),
|
|
507
|
+
('max_descriptor', models.CharField(max_length=20)),
|
|
582
508
|
],
|
|
583
509
|
options={
|
|
584
510
|
'abstract': False,
|
|
585
511
|
},
|
|
586
512
|
),
|
|
587
|
-
migrations.CreateModel(
|
|
588
|
-
name='PatientLabSample',
|
|
589
|
-
fields=[
|
|
590
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
591
|
-
('date', models.DateTimeField()),
|
|
592
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='lab_samples', to='endoreg_db.patient')),
|
|
593
|
-
],
|
|
594
|
-
),
|
|
595
513
|
migrations.CreateModel(
|
|
596
514
|
name='PatientLabSampleType',
|
|
597
515
|
fields=[
|
|
@@ -602,21 +520,6 @@ class Migration(migrations.Migration):
|
|
|
602
520
|
('description', models.TextField(blank=True, null=True)),
|
|
603
521
|
],
|
|
604
522
|
),
|
|
605
|
-
migrations.CreateModel(
|
|
606
|
-
name='PatientMedication',
|
|
607
|
-
fields=[
|
|
608
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
609
|
-
('dosage', models.JSONField()),
|
|
610
|
-
('active', models.BooleanField(default=True)),
|
|
611
|
-
('medication_indication', models.ForeignKey(null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_medications', to='endoreg_db.medicationindication')),
|
|
612
|
-
('medication_schedules', models.ManyToManyField(to='endoreg_db.medicationschedule')),
|
|
613
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
614
|
-
],
|
|
615
|
-
options={
|
|
616
|
-
'verbose_name': 'Patient Medication',
|
|
617
|
-
'verbose_name_plural': 'Patient Medications',
|
|
618
|
-
},
|
|
619
|
-
),
|
|
620
523
|
migrations.CreateModel(
|
|
621
524
|
name='PdfType',
|
|
622
525
|
fields=[
|
|
@@ -660,6 +563,14 @@ class Migration(migrations.Migration):
|
|
|
660
563
|
('description', models.TextField(blank=True, null=True)),
|
|
661
564
|
],
|
|
662
565
|
),
|
|
566
|
+
migrations.CreateModel(
|
|
567
|
+
name='QuizQuestion',
|
|
568
|
+
fields=[
|
|
569
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
570
|
+
('text', models.TextField()),
|
|
571
|
+
('description', models.TextField(blank=True, null=True)),
|
|
572
|
+
],
|
|
573
|
+
),
|
|
663
574
|
migrations.CreateModel(
|
|
664
575
|
name='QuizQuestionType',
|
|
665
576
|
fields=[
|
|
@@ -668,6 +579,19 @@ class Migration(migrations.Migration):
|
|
|
668
579
|
('description', models.TextField(blank=True, null=True)),
|
|
669
580
|
],
|
|
670
581
|
),
|
|
582
|
+
migrations.CreateModel(
|
|
583
|
+
name='RawFrame',
|
|
584
|
+
fields=[
|
|
585
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
586
|
+
('frame_number', models.IntegerField()),
|
|
587
|
+
('suffix', models.CharField(max_length=255)),
|
|
588
|
+
('image', models.ImageField(blank=True, null=True, upload_to='frames')),
|
|
589
|
+
('is_raw', models.BooleanField(default=False)),
|
|
590
|
+
],
|
|
591
|
+
options={
|
|
592
|
+
'abstract': False,
|
|
593
|
+
},
|
|
594
|
+
),
|
|
671
595
|
migrations.CreateModel(
|
|
672
596
|
name='ReportReaderFlag',
|
|
673
597
|
fields=[
|
|
@@ -685,21 +609,6 @@ class Migration(migrations.Migration):
|
|
|
685
609
|
('name_en', models.CharField(max_length=255, null=True)),
|
|
686
610
|
],
|
|
687
611
|
),
|
|
688
|
-
migrations.CreateModel(
|
|
689
|
-
name='Rule',
|
|
690
|
-
fields=[
|
|
691
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
692
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
693
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
694
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
695
|
-
('description', models.TextField(blank=True, null=True)),
|
|
696
|
-
('attribute_key', models.CharField(max_length=255)),
|
|
697
|
-
],
|
|
698
|
-
options={
|
|
699
|
-
'verbose_name': 'Rule',
|
|
700
|
-
'verbose_name_plural': 'Rules',
|
|
701
|
-
},
|
|
702
|
-
),
|
|
703
612
|
migrations.CreateModel(
|
|
704
613
|
name='RuleAttributeDType',
|
|
705
614
|
fields=[
|
|
@@ -722,18 +631,6 @@ class Migration(migrations.Migration):
|
|
|
722
631
|
'verbose_name_plural': 'Rule Types',
|
|
723
632
|
},
|
|
724
633
|
),
|
|
725
|
-
migrations.CreateModel(
|
|
726
|
-
name='SensitiveMeta',
|
|
727
|
-
fields=[
|
|
728
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
729
|
-
('examination_date', models.DateField(blank=True, null=True)),
|
|
730
|
-
('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
731
|
-
('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
732
|
-
('patient_dob', models.DateField(blank=True, null=True)),
|
|
733
|
-
('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
|
|
734
|
-
('endoscope_sn', models.CharField(blank=True, max_length=255, null=True)),
|
|
735
|
-
],
|
|
736
|
-
),
|
|
737
634
|
migrations.CreateModel(
|
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738
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|
name='SingleCategoricalValueDistribution',
|
|
739
636
|
fields=[
|
|
@@ -797,29 +694,13 @@ class Migration(migrations.Migration):
|
|
|
797
694
|
],
|
|
798
695
|
),
|
|
799
696
|
migrations.CreateModel(
|
|
800
|
-
name='
|
|
697
|
+
name='UploadedFile',
|
|
801
698
|
fields=[
|
|
802
699
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
803
|
-
('
|
|
804
|
-
('
|
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805
|
-
('
|
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806
|
-
('suffix', models.CharField(max_length=255)),
|
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807
|
-
('fps', models.FloatField()),
|
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808
|
-
('duration', models.FloatField()),
|
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809
|
-
('width', models.IntegerField()),
|
|
810
|
-
('height', models.IntegerField()),
|
|
811
|
-
('endoscope_image_x', models.IntegerField(blank=True, null=True)),
|
|
812
|
-
('endoscope_image_y', models.IntegerField(blank=True, null=True)),
|
|
813
|
-
('endoscope_image_width', models.IntegerField(blank=True, null=True)),
|
|
814
|
-
('endoscope_image_height', models.IntegerField(blank=True, null=True)),
|
|
815
|
-
('frames_extracted', models.BooleanField(default=False)),
|
|
816
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
817
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
818
|
-
('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
700
|
+
('original_file', models.FileField(upload_to='uploads/original/')),
|
|
701
|
+
('upload_date', models.DateTimeField(default=django.utils.timezone.now)),
|
|
702
|
+
('description', models.TextField(blank=True, null=True)),
|
|
819
703
|
],
|
|
820
|
-
options={
|
|
821
|
-
'abstract': False,
|
|
822
|
-
},
|
|
823
704
|
),
|
|
824
705
|
migrations.CreateModel(
|
|
825
706
|
name='VideoImportMeta',
|
|
@@ -833,276 +714,736 @@ class Migration(migrations.Migration):
|
|
|
833
714
|
],
|
|
834
715
|
),
|
|
835
716
|
migrations.CreateModel(
|
|
836
|
-
name='
|
|
717
|
+
name='VideoSegmentationLabel',
|
|
837
718
|
fields=[
|
|
838
719
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
839
720
|
('name', models.CharField(max_length=255)),
|
|
840
|
-
('name_de', models.CharField(max_length=255, null=True)),
|
|
841
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
|
721
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
722
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
723
|
+
('description', models.TextField(blank=True, null=True)),
|
|
724
|
+
('color', models.CharField(blank=True, max_length=255, null=True)),
|
|
725
|
+
('order_priority', models.IntegerField(default=0)),
|
|
842
726
|
],
|
|
843
727
|
),
|
|
844
728
|
migrations.CreateModel(
|
|
845
|
-
name='
|
|
729
|
+
name='Waste',
|
|
846
730
|
fields=[
|
|
847
731
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
848
|
-
('
|
|
849
|
-
('
|
|
850
|
-
('
|
|
851
|
-
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
852
|
-
('video', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.video')),
|
|
732
|
+
('name', models.CharField(max_length=255)),
|
|
733
|
+
('name_de', models.CharField(max_length=255, null=True)),
|
|
734
|
+
('name_en', models.CharField(max_length=255, null=True)),
|
|
853
735
|
],
|
|
854
|
-
options={
|
|
855
|
-
'abstract': False,
|
|
856
|
-
'unique_together': {('model_meta', 'video')},
|
|
857
|
-
},
|
|
858
736
|
),
|
|
859
737
|
migrations.CreateModel(
|
|
860
|
-
name='
|
|
738
|
+
name='AnonymousImageAnnotation',
|
|
861
739
|
fields=[
|
|
862
740
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
863
|
-
('
|
|
864
|
-
('
|
|
865
|
-
('
|
|
866
|
-
('
|
|
867
|
-
('
|
|
741
|
+
('image_name', models.CharField(max_length=255)),
|
|
742
|
+
('original_image_url', models.CharField(default='https://example.com/placeholder.jpg', max_length=255)),
|
|
743
|
+
('slug', models.SlugField(blank=True, null=True, unique=True)),
|
|
744
|
+
('polyp_count', models.IntegerField()),
|
|
745
|
+
('comments', models.TextField(blank=True, null=True)),
|
|
746
|
+
('gender', models.CharField(max_length=255)),
|
|
747
|
+
('name_image_url', models.CharField(max_length=255)),
|
|
748
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
749
|
+
('processed', models.BooleanField(default=False)),
|
|
750
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.anonymizedimagelabel')),
|
|
868
751
|
],
|
|
869
752
|
),
|
|
870
|
-
migrations.AddField(
|
|
871
|
-
model_name='video',
|
|
872
|
-
name='import_meta',
|
|
873
|
-
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta'),
|
|
874
|
-
),
|
|
875
|
-
migrations.AddField(
|
|
876
|
-
model_name='video',
|
|
877
|
-
name='patient',
|
|
878
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
|
|
879
|
-
),
|
|
880
753
|
migrations.CreateModel(
|
|
881
|
-
name='
|
|
754
|
+
name='CaseTemplateRule',
|
|
882
755
|
fields=[
|
|
883
756
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
884
|
-
('distance', models.FloatField()),
|
|
885
757
|
('name', models.CharField(max_length=255)),
|
|
886
758
|
('name_de', models.CharField(max_length=255, null=True)),
|
|
887
759
|
('name_en', models.CharField(max_length=255, null=True)),
|
|
888
|
-
('
|
|
889
|
-
('
|
|
760
|
+
('description', models.TextField(blank=True, null=True)),
|
|
761
|
+
('parent_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
762
|
+
('parent_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
763
|
+
('target_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
764
|
+
('target_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
765
|
+
('rule_values', models.JSONField(blank=True, null=True)),
|
|
766
|
+
('extra_parameters', models.JSONField(blank=True, null=True)),
|
|
767
|
+
('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
|
|
768
|
+
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
|
|
769
|
+
('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
|
|
770
|
+
('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
|
|
771
|
+
('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
772
|
+
('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
|
|
773
|
+
('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
890
774
|
],
|
|
891
775
|
),
|
|
892
776
|
migrations.CreateModel(
|
|
893
|
-
name='
|
|
777
|
+
name='CaseTemplate',
|
|
894
778
|
fields=[
|
|
895
779
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
896
780
|
('name', models.CharField(max_length=255, unique=True)),
|
|
897
|
-
('
|
|
898
|
-
('
|
|
899
|
-
('
|
|
781
|
+
('description', models.TextField(blank=True, null=True)),
|
|
782
|
+
('rules', models.ManyToManyField(to='endoreg_db.casetemplaterule')),
|
|
783
|
+
('secondary_rules', models.ManyToManyField(related_name='secondary_rules', to='endoreg_db.casetemplaterule')),
|
|
784
|
+
('template_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='case_templates', to='endoreg_db.casetemplatetype')),
|
|
900
785
|
],
|
|
901
786
|
),
|
|
902
|
-
migrations.AddField(
|
|
903
|
-
model_name='rule',
|
|
904
|
-
name='attribute_dtype',
|
|
905
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype'),
|
|
906
|
-
),
|
|
907
|
-
migrations.AddField(
|
|
908
|
-
model_name='rule',
|
|
909
|
-
name='rule_type',
|
|
910
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype'),
|
|
911
|
-
),
|
|
912
787
|
migrations.CreateModel(
|
|
913
|
-
name='
|
|
788
|
+
name='DiseaseClassification',
|
|
914
789
|
fields=[
|
|
915
790
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
916
|
-
('
|
|
917
|
-
('
|
|
918
|
-
('
|
|
919
|
-
('
|
|
920
|
-
('endoscope_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_endoscope_info_line', to='endoreg_db.reportreaderflag')),
|
|
921
|
-
('examiner_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_examiner_info_line', to='endoreg_db.reportreaderflag')),
|
|
922
|
-
('first_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.firstname')),
|
|
923
|
-
('last_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.lastname')),
|
|
924
|
-
('patient_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_patient_info_line', to='endoreg_db.reportreaderflag')),
|
|
791
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
792
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
793
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
794
|
+
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classifications', to='endoreg_db.disease')),
|
|
925
795
|
],
|
|
926
796
|
),
|
|
927
797
|
migrations.CreateModel(
|
|
928
|
-
name='
|
|
798
|
+
name='DiseaseClassificationChoice',
|
|
929
799
|
fields=[
|
|
930
800
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
931
|
-
('
|
|
932
|
-
('
|
|
933
|
-
('
|
|
934
|
-
('
|
|
935
|
-
('text_anonymized', models.TextField(blank=True, null=True)),
|
|
936
|
-
('date', models.DateField(blank=True, null=True)),
|
|
937
|
-
('time', models.TimeField(blank=True, null=True)),
|
|
938
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
939
|
-
('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examiner')),
|
|
940
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
801
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
802
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
803
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
804
|
+
('disease_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classification_choices', to='endoreg_db.diseaseclassification')),
|
|
941
805
|
],
|
|
942
806
|
),
|
|
943
807
|
migrations.CreateModel(
|
|
944
|
-
name='
|
|
808
|
+
name='DroppedName',
|
|
945
809
|
fields=[
|
|
946
810
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
947
811
|
('name', models.CharField(max_length=255)),
|
|
948
|
-
('
|
|
949
|
-
('
|
|
950
|
-
('
|
|
951
|
-
('
|
|
952
|
-
('
|
|
812
|
+
('gender', models.CharField(max_length=255)),
|
|
813
|
+
('x', models.FloatField()),
|
|
814
|
+
('y', models.FloatField()),
|
|
815
|
+
('name_image_url', models.CharField(max_length=255)),
|
|
816
|
+
('box_coordinates', models.CharField(blank=True, max_length=255, null=True)),
|
|
817
|
+
('annotation', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='dropped_names', to='endoreg_db.anonymousimageannotation')),
|
|
953
818
|
],
|
|
954
819
|
),
|
|
955
820
|
migrations.CreateModel(
|
|
956
|
-
name='
|
|
821
|
+
name='Endoscope',
|
|
957
822
|
fields=[
|
|
958
823
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
959
|
-
('
|
|
960
|
-
('
|
|
961
|
-
('
|
|
962
|
-
('
|
|
963
|
-
('
|
|
964
|
-
('
|
|
965
|
-
('state_frames_extracted', models.BooleanField(default=False)),
|
|
966
|
-
('state_initial_prediction_required', models.BooleanField(default=True)),
|
|
967
|
-
('state_initial_prediction_completed', models.BooleanField(default=False)),
|
|
968
|
-
('state_initial_prediction_import_required', models.BooleanField(default=True)),
|
|
969
|
-
('state_initial_prediction_import_completed', models.BooleanField(default=False)),
|
|
970
|
-
('state_ocr_required', models.BooleanField(default=True)),
|
|
971
|
-
('state_ocr_completed', models.BooleanField(default=False)),
|
|
972
|
-
('state_outside_validated', models.BooleanField(default=False)),
|
|
973
|
-
('state_ocr_result_validated', models.BooleanField(default=False)),
|
|
974
|
-
('state_sensitive_data_retrieved', models.BooleanField(default=False)),
|
|
975
|
-
('state_histology_required', models.BooleanField(blank=True, null=True)),
|
|
976
|
-
('state_histology_available', models.BooleanField(default=False)),
|
|
977
|
-
('state_follow_up_intervention_required', models.BooleanField(blank=True, null=True)),
|
|
978
|
-
('state_follow_up_intervention_available', models.BooleanField(default=False)),
|
|
979
|
-
('state_dataset_complete', models.BooleanField(default=False)),
|
|
980
|
-
('state_anonym_video_required', models.BooleanField(default=True)),
|
|
981
|
-
('state_anonym_video_performed', models.BooleanField(default=False)),
|
|
982
|
-
('state_original_reports_deleted', models.BooleanField(default=False)),
|
|
983
|
-
('state_original_video_deleted', models.BooleanField(default=False)),
|
|
984
|
-
('state_finalized', models.BooleanField(default=False)),
|
|
985
|
-
('frame_dir', models.CharField(max_length=255)),
|
|
986
|
-
('prediction_dir', models.CharField(max_length=255)),
|
|
987
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
988
|
-
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
989
|
-
('sensitive_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.sensitivemeta')),
|
|
990
|
-
('video_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa')),
|
|
824
|
+
('name', models.CharField(max_length=255)),
|
|
825
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
826
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
827
|
+
('sn', models.CharField(max_length=255)),
|
|
828
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.center')),
|
|
829
|
+
('endoscope_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.endoscopetype')),
|
|
991
830
|
],
|
|
831
|
+
options={
|
|
832
|
+
'verbose_name': 'Endoscope',
|
|
833
|
+
'verbose_name_plural': 'Endoscopes',
|
|
834
|
+
'ordering': ['name'],
|
|
835
|
+
},
|
|
992
836
|
),
|
|
993
837
|
migrations.CreateModel(
|
|
994
|
-
name='
|
|
838
|
+
name='EndoscopyProcessor',
|
|
995
839
|
fields=[
|
|
996
840
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
997
|
-
('
|
|
998
|
-
('
|
|
999
|
-
('
|
|
1000
|
-
('
|
|
1001
|
-
('
|
|
1002
|
-
('
|
|
1003
|
-
('
|
|
1004
|
-
('
|
|
1005
|
-
('
|
|
1006
|
-
('
|
|
1007
|
-
('
|
|
1008
|
-
|
|
1009
|
-
|
|
1010
|
-
|
|
1011
|
-
|
|
1012
|
-
|
|
841
|
+
('name', models.CharField(max_length=255)),
|
|
842
|
+
('image_width', models.IntegerField()),
|
|
843
|
+
('image_height', models.IntegerField()),
|
|
844
|
+
('endoscope_image_x', models.IntegerField()),
|
|
845
|
+
('endoscope_image_y', models.IntegerField()),
|
|
846
|
+
('endoscope_image_width', models.IntegerField()),
|
|
847
|
+
('endoscope_image_height', models.IntegerField()),
|
|
848
|
+
('examination_date_x', models.IntegerField()),
|
|
849
|
+
('examination_date_y', models.IntegerField()),
|
|
850
|
+
('examination_date_width', models.IntegerField()),
|
|
851
|
+
('examination_date_height', models.IntegerField()),
|
|
852
|
+
('examination_time_x', models.IntegerField(blank=True, null=True)),
|
|
853
|
+
('examination_time_y', models.IntegerField(blank=True, null=True)),
|
|
854
|
+
('examination_time_width', models.IntegerField(blank=True, null=True)),
|
|
855
|
+
('examination_time_height', models.IntegerField(blank=True, null=True)),
|
|
856
|
+
('patient_first_name_x', models.IntegerField()),
|
|
857
|
+
('patient_first_name_y', models.IntegerField()),
|
|
858
|
+
('patient_first_name_width', models.IntegerField()),
|
|
859
|
+
('patient_first_name_height', models.IntegerField()),
|
|
860
|
+
('patient_last_name_x', models.IntegerField()),
|
|
861
|
+
('patient_last_name_y', models.IntegerField()),
|
|
862
|
+
('patient_last_name_width', models.IntegerField()),
|
|
863
|
+
('patient_last_name_height', models.IntegerField()),
|
|
864
|
+
('patient_dob_x', models.IntegerField()),
|
|
865
|
+
('patient_dob_y', models.IntegerField()),
|
|
866
|
+
('patient_dob_width', models.IntegerField()),
|
|
867
|
+
('patient_dob_height', models.IntegerField()),
|
|
868
|
+
('endoscope_type_x', models.IntegerField(blank=True, null=True)),
|
|
869
|
+
('endoscope_type_y', models.IntegerField(blank=True, null=True)),
|
|
870
|
+
('endoscope_type_width', models.IntegerField(blank=True, null=True)),
|
|
871
|
+
('endoscope_type_height', models.IntegerField(blank=True, null=True)),
|
|
872
|
+
('endoscope_sn_x', models.IntegerField(blank=True, null=True)),
|
|
873
|
+
('endoscope_sn_y', models.IntegerField(blank=True, null=True)),
|
|
874
|
+
('endoscope_sn_width', models.IntegerField(blank=True, null=True)),
|
|
875
|
+
('endoscope_sn_height', models.IntegerField(blank=True, null=True)),
|
|
876
|
+
('centers', models.ManyToManyField(blank=True, related_name='endoscopy_processors', to='endoreg_db.center')),
|
|
877
|
+
],
|
|
878
|
+
),
|
|
879
|
+
migrations.CreateModel(
|
|
880
|
+
name='Event',
|
|
881
|
+
fields=[
|
|
1013
882
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1014
|
-
('
|
|
883
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
884
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
885
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
1015
886
|
('description', models.TextField(blank=True, null=True)),
|
|
1016
|
-
('
|
|
887
|
+
('event_classification', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.eventclassification')),
|
|
1017
888
|
],
|
|
1018
889
|
),
|
|
1019
890
|
migrations.CreateModel(
|
|
1020
|
-
name='
|
|
891
|
+
name='EventClassificationChoice',
|
|
1021
892
|
fields=[
|
|
1022
893
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1023
|
-
('
|
|
1024
|
-
('
|
|
1025
|
-
('
|
|
1026
|
-
('
|
|
1027
|
-
('
|
|
894
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
895
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
896
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
897
|
+
('subcategories', models.JSONField(default=dict)),
|
|
898
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
899
|
+
('event_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='event_classification_choices', to='endoreg_db.eventclassification')),
|
|
1028
900
|
],
|
|
1029
901
|
),
|
|
1030
902
|
migrations.CreateModel(
|
|
1031
|
-
name='
|
|
903
|
+
name='ExaminationIndication',
|
|
1032
904
|
fields=[
|
|
1033
905
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1034
|
-
('name', models.CharField(max_length=255,
|
|
1035
|
-
('
|
|
1036
|
-
('
|
|
1037
|
-
('
|
|
1038
|
-
('
|
|
1039
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
906
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
907
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
908
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
909
|
+
('examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.examination')),
|
|
910
|
+
('classification', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.examinationindicationclassification')),
|
|
1040
911
|
],
|
|
1041
912
|
),
|
|
1042
913
|
migrations.CreateModel(
|
|
1043
|
-
name='
|
|
914
|
+
name='ExaminationIndicationClassificationChoice',
|
|
1044
915
|
fields=[
|
|
1045
916
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1046
|
-
('
|
|
1047
|
-
('
|
|
1048
|
-
('
|
|
1049
|
-
('
|
|
1050
|
-
('
|
|
917
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
918
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
919
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
920
|
+
('subcategories', models.JSONField(default=dict)),
|
|
921
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
922
|
+
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='choices', to='endoreg_db.examinationindicationclassification')),
|
|
923
|
+
],
|
|
924
|
+
),
|
|
925
|
+
migrations.CreateModel(
|
|
926
|
+
name='ExaminationTimeType',
|
|
927
|
+
fields=[
|
|
928
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
929
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
930
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
931
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
932
|
+
('examinations', models.ManyToManyField(blank=True, to='endoreg_db.examination')),
|
|
933
|
+
],
|
|
934
|
+
options={
|
|
935
|
+
'verbose_name': 'Examination Time Type',
|
|
936
|
+
'verbose_name_plural': 'Examination Time Types',
|
|
937
|
+
'ordering': ['name'],
|
|
938
|
+
},
|
|
939
|
+
),
|
|
940
|
+
migrations.CreateModel(
|
|
941
|
+
name='ExaminationTime',
|
|
942
|
+
fields=[
|
|
943
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
944
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
945
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
946
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
947
|
+
('start_time', models.TimeField(blank=True, null=True)),
|
|
948
|
+
('end_time', models.TimeField(blank=True, null=True)),
|
|
949
|
+
('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
|
|
1051
950
|
],
|
|
951
|
+
options={
|
|
952
|
+
'verbose_name': 'Examination Time',
|
|
953
|
+
'verbose_name_plural': 'Examination Times',
|
|
954
|
+
'ordering': ['name'],
|
|
955
|
+
},
|
|
1052
956
|
),
|
|
1053
957
|
migrations.AddField(
|
|
1054
|
-
model_name='
|
|
1055
|
-
name='
|
|
1056
|
-
field=models.
|
|
958
|
+
model_name='examination',
|
|
959
|
+
name='examination_types',
|
|
960
|
+
field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
|
|
961
|
+
),
|
|
962
|
+
migrations.CreateModel(
|
|
963
|
+
name='FindingIntervention',
|
|
964
|
+
fields=[
|
|
965
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
966
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
967
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
968
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
969
|
+
('description', models.TextField(blank=True, null=True)),
|
|
970
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
971
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
972
|
+
('contraindications', models.ManyToManyField(blank=True, related_name='contraindicating_finding_interventions', to='endoreg_db.contraindication')),
|
|
973
|
+
('intervention_types', models.ManyToManyField(blank=True, related_name='interventions', to='endoreg_db.findinginterventiontype')),
|
|
974
|
+
],
|
|
975
|
+
),
|
|
976
|
+
migrations.CreateModel(
|
|
977
|
+
name='Finding',
|
|
978
|
+
fields=[
|
|
979
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
980
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
981
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
982
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
983
|
+
('description', models.TextField(blank=True, null=True)),
|
|
984
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
985
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
986
|
+
('examinations', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.examination')),
|
|
987
|
+
('causing_finding_interventions', models.ManyToManyField(blank=True, related_name='causing_findings', to='endoreg_db.findingintervention')),
|
|
988
|
+
('finding_interventions', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingintervention')),
|
|
989
|
+
('opt_causing_finding_interventions', models.ManyToManyField(blank=True, related_name='opt_causing_findings', to='endoreg_db.findingintervention')),
|
|
990
|
+
('optional_morphology_classification_types', models.ManyToManyField(blank=True, related_name='optional_for_findings', to='endoreg_db.findingmorphologyclassificationtype')),
|
|
991
|
+
('required_morphology_classification_types', models.ManyToManyField(blank=True, related_name='required_by_findings', to='endoreg_db.findingmorphologyclassificationtype')),
|
|
992
|
+
('finding_types', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingtype')),
|
|
993
|
+
],
|
|
994
|
+
),
|
|
995
|
+
migrations.CreateModel(
|
|
996
|
+
name='FindingMorphologyClassificationChoice',
|
|
997
|
+
fields=[
|
|
998
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
999
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1000
|
+
('name_de', models.CharField(blank=True, max_length=255)),
|
|
1001
|
+
('name_en', models.CharField(blank=True, max_length=255)),
|
|
1002
|
+
('description', models.TextField(blank=True)),
|
|
1003
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1004
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1005
|
+
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='choices', to='endoreg_db.findingmorphologyclassification')),
|
|
1006
|
+
],
|
|
1057
1007
|
),
|
|
1058
1008
|
migrations.AddField(
|
|
1059
|
-
model_name='
|
|
1060
|
-
name='
|
|
1061
|
-
field=models.ForeignKey(
|
|
1009
|
+
model_name='findingmorphologyclassification',
|
|
1010
|
+
name='classification_type',
|
|
1011
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.findingmorphologyclassificationtype'),
|
|
1062
1012
|
),
|
|
1063
1013
|
migrations.CreateModel(
|
|
1064
|
-
name='
|
|
1014
|
+
name='FindingLocationClassification',
|
|
1065
1015
|
fields=[
|
|
1066
1016
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1067
|
-
('
|
|
1068
|
-
('
|
|
1069
|
-
('
|
|
1017
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1018
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
1019
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
1020
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1021
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
1022
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
1023
|
+
('examinations', models.ManyToManyField(blank=True, related_name='location_classifications', to='endoreg_db.examination')),
|
|
1024
|
+
('findings', models.ManyToManyField(blank=True, related_name='location_classifications', to='endoreg_db.finding')),
|
|
1025
|
+
('choices', models.ManyToManyField(blank=True, related_name='location_classifications', to='endoreg_db.findinglocationclassificationchoice')),
|
|
1026
|
+
('finding_types', models.ManyToManyField(blank=True, related_name='location_classifications', to='endoreg_db.findingtype')),
|
|
1070
1027
|
],
|
|
1071
1028
|
),
|
|
1072
1029
|
migrations.AddField(
|
|
1073
|
-
model_name='
|
|
1074
|
-
name='
|
|
1075
|
-
field=models.ManyToManyField(related_name='
|
|
1030
|
+
model_name='center',
|
|
1031
|
+
name='first_names',
|
|
1032
|
+
field=models.ManyToManyField(related_name='centers', to='endoreg_db.firstname'),
|
|
1033
|
+
),
|
|
1034
|
+
migrations.CreateModel(
|
|
1035
|
+
name='Examiner',
|
|
1036
|
+
fields=[
|
|
1037
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1038
|
+
('first_name', models.CharField(max_length=255)),
|
|
1039
|
+
('last_name', models.CharField(max_length=255)),
|
|
1040
|
+
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
1041
|
+
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
1042
|
+
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
1043
|
+
('is_real_person', models.BooleanField(default=True)),
|
|
1044
|
+
('hash', models.CharField(max_length=255, unique=True)),
|
|
1045
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1046
|
+
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
1047
|
+
],
|
|
1048
|
+
options={
|
|
1049
|
+
'abstract': False,
|
|
1050
|
+
},
|
|
1051
|
+
),
|
|
1052
|
+
migrations.CreateModel(
|
|
1053
|
+
name='BinaryClassificationAnnotationTask',
|
|
1054
|
+
fields=[
|
|
1055
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1056
|
+
('is_finished', models.BooleanField(default=False)),
|
|
1057
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1058
|
+
('date_finished', models.DateTimeField(blank=True, null=True)),
|
|
1059
|
+
('image_path', models.CharField(blank=True, max_length=255, null=True)),
|
|
1060
|
+
('labelstudio_project_id', models.IntegerField(blank=True, null=True)),
|
|
1061
|
+
('labelstudio_task_id', models.IntegerField(blank=True, null=True)),
|
|
1062
|
+
('image_type', models.CharField(default='frame', max_length=255)),
|
|
1063
|
+
('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.frame')),
|
|
1064
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
|
|
1065
|
+
],
|
|
1066
|
+
options={
|
|
1067
|
+
'abstract': False,
|
|
1068
|
+
},
|
|
1069
|
+
),
|
|
1070
|
+
migrations.CreateModel(
|
|
1071
|
+
name='LabelSet',
|
|
1072
|
+
fields=[
|
|
1073
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1074
|
+
('name', models.CharField(max_length=255)),
|
|
1075
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1076
|
+
('version', models.IntegerField()),
|
|
1077
|
+
('labels', models.ManyToManyField(related_name='labels', to='endoreg_db.label')),
|
|
1078
|
+
],
|
|
1076
1079
|
),
|
|
1077
1080
|
migrations.AddField(
|
|
1078
|
-
model_name='
|
|
1079
|
-
name='
|
|
1080
|
-
field=models.
|
|
1081
|
+
model_name='label',
|
|
1082
|
+
name='label_type',
|
|
1083
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
|
|
1084
|
+
),
|
|
1085
|
+
migrations.CreateModel(
|
|
1086
|
+
name='LabValue',
|
|
1087
|
+
fields=[
|
|
1088
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1089
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1090
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
1091
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
1092
|
+
('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
|
|
1093
|
+
('numeric_precision', models.IntegerField(default=3)),
|
|
1094
|
+
('default_normal_range', models.JSONField(blank=True, null=True)),
|
|
1095
|
+
('normal_range_age_dependent', models.BooleanField(default=False)),
|
|
1096
|
+
('normal_range_gender_dependent', models.BooleanField(default=False)),
|
|
1097
|
+
('normal_range_special_case', models.BooleanField(default=False)),
|
|
1098
|
+
('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
|
|
1099
|
+
('default_multiple_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_multiple_categorical_value_distribution', to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
1100
|
+
('default_numerical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_numerical_value_distribution', to='endoreg_db.numericvaluedistribution')),
|
|
1101
|
+
('default_single_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_single_categorical_value_distribution', to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
1102
|
+
('default_unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1103
|
+
],
|
|
1081
1104
|
),
|
|
1082
1105
|
migrations.AddField(
|
|
1083
|
-
model_name='
|
|
1084
|
-
name='
|
|
1085
|
-
field=models.
|
|
1106
|
+
model_name='findingintervention',
|
|
1107
|
+
name='required_lab_values',
|
|
1108
|
+
field=models.ManyToManyField(blank=True, related_name='required_by_finding_interventions', to='endoreg_db.labvalue'),
|
|
1086
1109
|
),
|
|
1087
1110
|
migrations.AddField(
|
|
1088
|
-
model_name='
|
|
1089
|
-
name='
|
|
1090
|
-
field=models.
|
|
1111
|
+
model_name='center',
|
|
1112
|
+
name='last_names',
|
|
1113
|
+
field=models.ManyToManyField(related_name='centers', to='endoreg_db.lastname'),
|
|
1114
|
+
),
|
|
1115
|
+
migrations.CreateModel(
|
|
1116
|
+
name='LxClient',
|
|
1117
|
+
fields=[
|
|
1118
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1119
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1120
|
+
('description', models.TextField(blank=True)),
|
|
1121
|
+
('vpn_ip', models.GenericIPAddressField(blank=True, null=True)),
|
|
1122
|
+
('client_tags', models.ManyToManyField(blank=True, to='endoreg_db.lxclienttag')),
|
|
1123
|
+
('client_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.lxclienttype')),
|
|
1124
|
+
],
|
|
1091
1125
|
),
|
|
1092
1126
|
migrations.AddField(
|
|
1093
|
-
model_name='
|
|
1094
|
-
name='
|
|
1095
|
-
field=models.
|
|
1127
|
+
model_name='lxclienttag',
|
|
1128
|
+
name='permissions',
|
|
1129
|
+
field=models.ManyToManyField(blank=True, related_name='allowed_client_tags', to='endoreg_db.lxpermission'),
|
|
1130
|
+
),
|
|
1131
|
+
migrations.CreateModel(
|
|
1132
|
+
name='LxIdentity',
|
|
1133
|
+
fields=[
|
|
1134
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1135
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1136
|
+
('description', models.TextField(blank=True)),
|
|
1137
|
+
('identity_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.lxidentitytype')),
|
|
1138
|
+
('user', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.lxuser')),
|
|
1139
|
+
],
|
|
1140
|
+
),
|
|
1141
|
+
migrations.CreateModel(
|
|
1142
|
+
name='Material',
|
|
1143
|
+
fields=[
|
|
1144
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1145
|
+
('name', models.CharField(max_length=255)),
|
|
1146
|
+
('name_de', models.CharField(max_length=255, null=True)),
|
|
1147
|
+
('name_en', models.CharField(max_length=255, null=True)),
|
|
1148
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1149
|
+
],
|
|
1150
|
+
),
|
|
1151
|
+
migrations.CreateModel(
|
|
1152
|
+
name='MedicationSchedule',
|
|
1153
|
+
fields=[
|
|
1154
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1155
|
+
('name', models.CharField(max_length=255)),
|
|
1156
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
1157
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
1158
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1159
|
+
('therapy_duration_d', models.FloatField(blank=True, null=True)),
|
|
1160
|
+
('dose', models.FloatField()),
|
|
1161
|
+
('intake_times', models.ManyToManyField(to='endoreg_db.medicationintaketime')),
|
|
1162
|
+
('medication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.medication')),
|
|
1163
|
+
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1164
|
+
],
|
|
1165
|
+
),
|
|
1166
|
+
migrations.CreateModel(
|
|
1167
|
+
name='MedicationIndication',
|
|
1168
|
+
fields=[
|
|
1169
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1170
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1171
|
+
('disease_classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1172
|
+
('diseases', models.ManyToManyField(to='endoreg_db.disease')),
|
|
1173
|
+
('events', models.ManyToManyField(to='endoreg_db.event')),
|
|
1174
|
+
('sources', models.ManyToManyField(to='endoreg_db.informationsource')),
|
|
1175
|
+
('indication_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='medication_indications', to='endoreg_db.medicationindicationtype')),
|
|
1176
|
+
('medication_schedules', models.ManyToManyField(to='endoreg_db.medicationschedule')),
|
|
1177
|
+
],
|
|
1178
|
+
),
|
|
1179
|
+
migrations.CreateModel(
|
|
1180
|
+
name='ModelMeta',
|
|
1181
|
+
fields=[
|
|
1182
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1183
|
+
('name', models.CharField(max_length=255)),
|
|
1184
|
+
('version', models.CharField(max_length=255)),
|
|
1185
|
+
('activation', models.CharField(default='sigmoid', max_length=255)),
|
|
1186
|
+
('weights', models.FileField(blank=True, null=True, upload_to='db_model_weights', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['ckpt'])])),
|
|
1187
|
+
('mean', models.CharField(default='0.45211223,0.27139644,0.19264949', max_length=255)),
|
|
1188
|
+
('std', models.CharField(default='0.31418097,0.21088019,0.16059452', max_length=255)),
|
|
1189
|
+
('size_x', models.IntegerField(default=716)),
|
|
1190
|
+
('size_y', models.IntegerField(default=716)),
|
|
1191
|
+
('axes', models.CharField(default='2,0,1', max_length=255)),
|
|
1192
|
+
('batchsize', models.IntegerField(default=16)),
|
|
1193
|
+
('num_workers', models.IntegerField(default=0)),
|
|
1194
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1195
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1196
|
+
('labelset', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.labelset')),
|
|
1197
|
+
('model', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.aimodel')),
|
|
1198
|
+
],
|
|
1199
|
+
),
|
|
1200
|
+
migrations.AddField(
|
|
1201
|
+
model_name='aimodel',
|
|
1202
|
+
name='active_meta',
|
|
1203
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='active_model', to='endoreg_db.modelmeta'),
|
|
1204
|
+
),
|
|
1205
|
+
migrations.CreateModel(
|
|
1206
|
+
name='ActiveModel',
|
|
1207
|
+
fields=[
|
|
1208
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1209
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1210
|
+
('model_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1211
|
+
],
|
|
1212
|
+
),
|
|
1213
|
+
migrations.CreateModel(
|
|
1214
|
+
name='AglServiceLogEntry',
|
|
1215
|
+
fields=[
|
|
1216
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1217
|
+
('timestamp', models.DateTimeField(auto_now_add=True)),
|
|
1218
|
+
('ip_address', models.GenericIPAddressField(blank=True, null=True)),
|
|
1219
|
+
('user_agent', models.CharField(blank=True, max_length=256, null=True)),
|
|
1220
|
+
('message', models.TextField()),
|
|
1221
|
+
('json_content', models.JSONField(blank=True, null=True)),
|
|
1222
|
+
('service', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.aglservice')),
|
|
1223
|
+
('user', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to=settings.AUTH_USER_MODEL)),
|
|
1224
|
+
('log_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.logtype')),
|
|
1225
|
+
('device', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.networkdevice')),
|
|
1226
|
+
],
|
|
1227
|
+
options={
|
|
1228
|
+
'verbose_name': 'AGL Service Log Entry',
|
|
1229
|
+
'verbose_name_plural': 'AGL Service Log Entries',
|
|
1230
|
+
},
|
|
1231
|
+
),
|
|
1232
|
+
migrations.AddField(
|
|
1233
|
+
model_name='aglservice',
|
|
1234
|
+
name='devices',
|
|
1235
|
+
field=models.ManyToManyField(related_name='services', to='endoreg_db.networkdevice'),
|
|
1236
|
+
),
|
|
1237
|
+
migrations.CreateModel(
|
|
1238
|
+
name='NetworkDeviceLogEntry',
|
|
1239
|
+
fields=[
|
|
1240
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1241
|
+
('timestamp', models.DateTimeField(auto_now_add=True)),
|
|
1242
|
+
('ip_address', models.GenericIPAddressField(blank=True, null=True)),
|
|
1243
|
+
('user_agent', models.CharField(blank=True, max_length=256, null=True)),
|
|
1244
|
+
('message', models.TextField()),
|
|
1245
|
+
('json_content', models.JSONField(blank=True, null=True)),
|
|
1246
|
+
('datetime', models.DateTimeField(blank=True, default=None, null=True)),
|
|
1247
|
+
('aglnet_ip', models.GenericIPAddressField(blank=True, null=True)),
|
|
1248
|
+
('vpn_service_status', models.CharField(blank=True, max_length=255, null=True)),
|
|
1249
|
+
('vpn_service_restart_attempt', models.BooleanField(default=False)),
|
|
1250
|
+
('vpn_service_restart_success', models.BooleanField(blank=True, null=True)),
|
|
1251
|
+
('ping_vpn', models.BooleanField(default=False)),
|
|
1252
|
+
('ping_www', models.BooleanField(default=False)),
|
|
1253
|
+
('transferred_to_host', models.BooleanField(default=False)),
|
|
1254
|
+
('device', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.networkdevice')),
|
|
1255
|
+
('log_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.logtype')),
|
|
1256
|
+
('user', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to=settings.AUTH_USER_MODEL)),
|
|
1257
|
+
],
|
|
1258
|
+
options={
|
|
1259
|
+
'verbose_name': 'Network Device Log Entry',
|
|
1260
|
+
'verbose_name_plural': 'Network Device Log Entries',
|
|
1261
|
+
},
|
|
1262
|
+
),
|
|
1263
|
+
migrations.AddField(
|
|
1264
|
+
model_name='networkdevice',
|
|
1265
|
+
name='device_type',
|
|
1266
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.networkdevicetype'),
|
|
1267
|
+
),
|
|
1268
|
+
migrations.CreateModel(
|
|
1269
|
+
name='Organ',
|
|
1270
|
+
fields=[
|
|
1271
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1272
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1273
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
1274
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
1275
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1276
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
1277
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
1278
|
+
('location_choices', models.ManyToManyField(blank=True, related_name='organs', to='endoreg_db.findinglocationclassificationchoice')),
|
|
1279
|
+
],
|
|
1280
|
+
),
|
|
1281
|
+
migrations.CreateModel(
|
|
1282
|
+
name='Patient',
|
|
1283
|
+
fields=[
|
|
1284
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1285
|
+
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
1286
|
+
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
1287
|
+
('is_real_person', models.BooleanField(default=True)),
|
|
1288
|
+
('first_name', models.CharField(max_length=100)),
|
|
1289
|
+
('last_name', models.CharField(max_length=100)),
|
|
1290
|
+
('dob', models.DateField(blank=True, null=True)),
|
|
1291
|
+
('patient_hash', models.CharField(blank=True, max_length=255, null=True)),
|
|
1292
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1293
|
+
('gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
1294
|
+
],
|
|
1295
|
+
options={
|
|
1296
|
+
'abstract': False,
|
|
1297
|
+
},
|
|
1298
|
+
),
|
|
1299
|
+
migrations.CreateModel(
|
|
1300
|
+
name='PatientDisease',
|
|
1301
|
+
fields=[
|
|
1302
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1303
|
+
('start_date', models.DateField(blank=True, null=True)),
|
|
1304
|
+
('end_date', models.DateField(blank=True, null=True)),
|
|
1305
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1306
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1307
|
+
('last_update', models.DateTimeField(auto_now=True)),
|
|
1308
|
+
('classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1309
|
+
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.disease')),
|
|
1310
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1311
|
+
],
|
|
1312
|
+
options={
|
|
1313
|
+
'verbose_name': 'Patient Disease',
|
|
1314
|
+
'verbose_name_plural': 'Patient Diseases',
|
|
1315
|
+
},
|
|
1316
|
+
),
|
|
1317
|
+
migrations.CreateModel(
|
|
1318
|
+
name='PatientEvent',
|
|
1319
|
+
fields=[
|
|
1320
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1321
|
+
('date_start', models.DateField()),
|
|
1322
|
+
('date_end', models.DateField(blank=True, null=True)),
|
|
1323
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1324
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1325
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1326
|
+
('last_update', models.DateTimeField(auto_now=True)),
|
|
1327
|
+
('classification_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.eventclassificationchoice')),
|
|
1328
|
+
('event', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.event')),
|
|
1329
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1330
|
+
],
|
|
1331
|
+
),
|
|
1332
|
+
migrations.CreateModel(
|
|
1333
|
+
name='PatientExamination',
|
|
1334
|
+
fields=[
|
|
1335
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1336
|
+
('date_start', models.DateField(blank=True, null=True)),
|
|
1337
|
+
('date_end', models.DateField(blank=True, null=True)),
|
|
1338
|
+
('hash', models.CharField(max_length=255, unique=True)),
|
|
1339
|
+
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examination')),
|
|
1340
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_examinations', to='endoreg_db.patient')),
|
|
1341
|
+
],
|
|
1342
|
+
options={
|
|
1343
|
+
'verbose_name': 'Patient Examination',
|
|
1344
|
+
'verbose_name_plural': 'Patient Examinations',
|
|
1345
|
+
'ordering': ['patient', 'examination', 'date_start'],
|
|
1346
|
+
},
|
|
1347
|
+
),
|
|
1348
|
+
migrations.CreateModel(
|
|
1349
|
+
name='PatientExaminationIndication',
|
|
1350
|
+
fields=[
|
|
1351
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1352
|
+
('examination_indication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindication')),
|
|
1353
|
+
('indication_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindicationclassificationchoice')),
|
|
1354
|
+
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.patientexamination')),
|
|
1355
|
+
],
|
|
1356
|
+
),
|
|
1357
|
+
migrations.CreateModel(
|
|
1358
|
+
name='PatientFinding',
|
|
1359
|
+
fields=[
|
|
1360
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1361
|
+
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_findings', to='endoreg_db.finding')),
|
|
1362
|
+
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_findings', to='endoreg_db.patientexamination')),
|
|
1363
|
+
],
|
|
1364
|
+
options={
|
|
1365
|
+
'verbose_name': 'Patient Finding',
|
|
1366
|
+
'verbose_name_plural': 'Patient Findings',
|
|
1367
|
+
'ordering': ['patient_examination', 'finding'],
|
|
1368
|
+
},
|
|
1369
|
+
),
|
|
1370
|
+
migrations.CreateModel(
|
|
1371
|
+
name='PatientFindingIntervention',
|
|
1372
|
+
fields=[
|
|
1373
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1374
|
+
('state', models.CharField(blank=True, max_length=100, null=True)),
|
|
1375
|
+
('time_start', models.DateTimeField(blank=True, null=True)),
|
|
1376
|
+
('time_end', models.DateTimeField(blank=True, null=True)),
|
|
1377
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1378
|
+
('intervention', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_interventions', to='endoreg_db.findingintervention')),
|
|
1379
|
+
('patient_finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='interventions', to='endoreg_db.patientfinding')),
|
|
1380
|
+
],
|
|
1381
|
+
),
|
|
1382
|
+
migrations.CreateModel(
|
|
1383
|
+
name='PatientFindingLocation',
|
|
1384
|
+
fields=[
|
|
1385
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1386
|
+
('subcategories', models.JSONField(blank=True, null=True)),
|
|
1387
|
+
('numerical_descriptors', models.JSONField(blank=True, null=True)),
|
|
1388
|
+
('location_choice', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_locations', to='endoreg_db.findinglocationclassificationchoice')),
|
|
1389
|
+
('location_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_locations', to='endoreg_db.findinglocationclassification')),
|
|
1390
|
+
],
|
|
1391
|
+
options={
|
|
1392
|
+
'verbose_name': 'Patient Finding Location',
|
|
1393
|
+
'verbose_name_plural': 'Patient Finding Locations',
|
|
1394
|
+
'ordering': ['location_classification', 'location_choice'],
|
|
1395
|
+
},
|
|
1396
|
+
),
|
|
1397
|
+
migrations.AddField(
|
|
1398
|
+
model_name='patientfinding',
|
|
1399
|
+
name='locations',
|
|
1400
|
+
field=models.ManyToManyField(blank=True, related_name='patient_findings', to='endoreg_db.patientfindinglocation'),
|
|
1401
|
+
),
|
|
1402
|
+
migrations.CreateModel(
|
|
1403
|
+
name='PatientFindingMorphology',
|
|
1404
|
+
fields=[
|
|
1405
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1406
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1407
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1408
|
+
('morphology_choice', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_morphologies', to='endoreg_db.findingmorphologyclassificationchoice')),
|
|
1409
|
+
('morphology_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_morphologies', to='endoreg_db.findingmorphologyclassification')),
|
|
1410
|
+
],
|
|
1411
|
+
options={
|
|
1412
|
+
'verbose_name': 'Patient Finding Morphology',
|
|
1413
|
+
'verbose_name_plural': 'Patient Finding Morphologies',
|
|
1414
|
+
'ordering': ['morphology_classification', 'morphology_choice'],
|
|
1415
|
+
},
|
|
1416
|
+
),
|
|
1417
|
+
migrations.AddField(
|
|
1418
|
+
model_name='patientfinding',
|
|
1419
|
+
name='morphologies',
|
|
1420
|
+
field=models.ManyToManyField(blank=True, related_name='patient_findings', to='endoreg_db.patientfindingmorphology'),
|
|
1421
|
+
),
|
|
1422
|
+
migrations.CreateModel(
|
|
1423
|
+
name='PatientLabSample',
|
|
1424
|
+
fields=[
|
|
1425
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1426
|
+
('date', models.DateTimeField()),
|
|
1427
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='lab_samples', to='endoreg_db.patient')),
|
|
1428
|
+
('sample_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientlabsampletype')),
|
|
1429
|
+
],
|
|
1096
1430
|
),
|
|
1097
1431
|
migrations.CreateModel(
|
|
1098
|
-
name='
|
|
1432
|
+
name='PatientMedication',
|
|
1099
1433
|
fields=[
|
|
1100
1434
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1101
|
-
('
|
|
1102
|
-
('
|
|
1103
|
-
('
|
|
1104
|
-
('
|
|
1435
|
+
('dosage', models.JSONField(blank=True, null=True)),
|
|
1436
|
+
('active', models.BooleanField(default=True)),
|
|
1437
|
+
('intake_times', models.ManyToManyField(blank=True, related_name='patient_medications', to='endoreg_db.medicationintaketime')),
|
|
1438
|
+
('medication', models.ForeignKey(blank=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_medications', to='endoreg_db.medication')),
|
|
1439
|
+
('medication_indication', models.ForeignKey(null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_medications', to='endoreg_db.medicationindication')),
|
|
1440
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1441
|
+
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1105
1442
|
],
|
|
1443
|
+
options={
|
|
1444
|
+
'verbose_name': 'Patient Medication',
|
|
1445
|
+
'verbose_name_plural': 'Patient Medications',
|
|
1446
|
+
},
|
|
1106
1447
|
),
|
|
1107
1448
|
migrations.CreateModel(
|
|
1108
1449
|
name='PatientMedicationSchedule',
|
|
@@ -1110,321 +1451,378 @@ class Migration(migrations.Migration):
|
|
|
1110
1451
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1111
1452
|
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1112
1453
|
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1113
|
-
('medication', models.ManyToManyField(related_name='patient_medication_schedules', to='endoreg_db.patientmedication')),
|
|
1454
|
+
('medication', models.ManyToManyField(blank=True, related_name='patient_medication_schedules', to='endoreg_db.patientmedication')),
|
|
1114
1455
|
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1115
1456
|
],
|
|
1116
1457
|
),
|
|
1117
|
-
migrations.
|
|
1118
|
-
|
|
1119
|
-
|
|
1120
|
-
|
|
1458
|
+
migrations.CreateModel(
|
|
1459
|
+
name='PdfMeta',
|
|
1460
|
+
fields=[
|
|
1461
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1462
|
+
('date', models.DateField()),
|
|
1463
|
+
('time', models.TimeField()),
|
|
1464
|
+
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1465
|
+
('pdf_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.pdftype')),
|
|
1466
|
+
],
|
|
1121
1467
|
),
|
|
1122
1468
|
migrations.CreateModel(
|
|
1123
|
-
name='
|
|
1469
|
+
name='CenterProduct',
|
|
1124
1470
|
fields=[
|
|
1125
1471
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1126
|
-
('
|
|
1127
|
-
('
|
|
1128
|
-
('
|
|
1129
|
-
('normal_range', models.JSONField(default=dict)),
|
|
1130
|
-
('lab_value', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.labvalue')),
|
|
1131
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='lab_values', to='endoreg_db.patient')),
|
|
1132
|
-
('sample', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='values', to='endoreg_db.patientlabsample')),
|
|
1133
|
-
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1472
|
+
('date_used', models.DateField()),
|
|
1473
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1474
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
1134
1475
|
],
|
|
1135
1476
|
),
|
|
1136
1477
|
migrations.AddField(
|
|
1137
|
-
model_name='
|
|
1138
|
-
name='
|
|
1139
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.
|
|
1478
|
+
model_name='product',
|
|
1479
|
+
name='product_group',
|
|
1480
|
+
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.productgroup'),
|
|
1140
1481
|
),
|
|
1141
1482
|
migrations.CreateModel(
|
|
1142
|
-
name='
|
|
1483
|
+
name='PortalUserInfo',
|
|
1143
1484
|
fields=[
|
|
1144
1485
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1145
|
-
('
|
|
1146
|
-
('
|
|
1147
|
-
('
|
|
1148
|
-
('video', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.video')),
|
|
1486
|
+
('works_in_endoscopy', models.BooleanField(blank=True, null=True)),
|
|
1487
|
+
('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)),
|
|
1488
|
+
('profession', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.profession')),
|
|
1149
1489
|
],
|
|
1150
|
-
options={
|
|
1151
|
-
'verbose_name': 'Patient Examination',
|
|
1152
|
-
'verbose_name_plural': 'Patient Examinations',
|
|
1153
|
-
'ordering': ['patient', 'examination'],
|
|
1154
|
-
},
|
|
1155
1490
|
),
|
|
1156
1491
|
migrations.CreateModel(
|
|
1157
|
-
name='
|
|
1492
|
+
name='QuizAnswer',
|
|
1158
1493
|
fields=[
|
|
1159
1494
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1160
|
-
('
|
|
1161
|
-
('
|
|
1162
|
-
('
|
|
1163
|
-
('
|
|
1164
|
-
('
|
|
1165
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1495
|
+
('text_value', models.CharField(blank=True, max_length=255, null=True)),
|
|
1496
|
+
('number_value', models.FloatField(blank=True, null=True)),
|
|
1497
|
+
('last_updated', models.DateTimeField(auto_now=True)),
|
|
1498
|
+
('answer_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.quizanswertype')),
|
|
1499
|
+
('question', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.quizquestion')),
|
|
1166
1500
|
],
|
|
1167
1501
|
),
|
|
1502
|
+
migrations.AddField(
|
|
1503
|
+
model_name='quizquestion',
|
|
1504
|
+
name='question_type',
|
|
1505
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.quizquestiontype'),
|
|
1506
|
+
),
|
|
1168
1507
|
migrations.CreateModel(
|
|
1169
|
-
name='
|
|
1508
|
+
name='ImageClassificationAnnotation',
|
|
1170
1509
|
fields=[
|
|
1171
1510
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1172
|
-
('
|
|
1173
|
-
('
|
|
1174
|
-
('
|
|
1175
|
-
('
|
|
1176
|
-
('
|
|
1177
|
-
('
|
|
1511
|
+
('value', models.BooleanField()),
|
|
1512
|
+
('float_value', models.FloatField(blank=True, null=True)),
|
|
1513
|
+
('annotator', models.CharField(blank=True, max_length=255, null=True)),
|
|
1514
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1515
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1516
|
+
('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.frame')),
|
|
1517
|
+
('information_source', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.informationsource')),
|
|
1518
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.label')),
|
|
1519
|
+
('model_meta', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.modelmeta')),
|
|
1520
|
+
('raw_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.rawframe')),
|
|
1178
1521
|
],
|
|
1179
1522
|
),
|
|
1180
1523
|
migrations.CreateModel(
|
|
1181
|
-
name='
|
|
1524
|
+
name='RawVideoFile',
|
|
1182
1525
|
fields=[
|
|
1183
1526
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1184
|
-
('
|
|
1185
|
-
('
|
|
1186
|
-
('
|
|
1187
|
-
('
|
|
1188
|
-
('
|
|
1189
|
-
('
|
|
1190
|
-
('
|
|
1191
|
-
('
|
|
1527
|
+
('uuid', models.UUIDField()),
|
|
1528
|
+
('original_file_name', models.CharField(max_length=255)),
|
|
1529
|
+
('video_hash', models.CharField(max_length=255, unique=True)),
|
|
1530
|
+
('uploaded_at', models.DateTimeField(auto_now_add=True)),
|
|
1531
|
+
('frame_dir', models.CharField(max_length=255)),
|
|
1532
|
+
('prediction_dir', models.CharField(max_length=255)),
|
|
1533
|
+
('predictions', models.JSONField(default=dict)),
|
|
1534
|
+
('fps', models.FloatField(blank=True, null=True)),
|
|
1535
|
+
('duration', models.FloatField(blank=True, null=True)),
|
|
1536
|
+
('readable_predictions', models.JSONField(default=dict)),
|
|
1537
|
+
('merged_predictions', models.JSONField(default=dict)),
|
|
1538
|
+
('smooth_merged_predictions', models.JSONField(default=dict)),
|
|
1539
|
+
('binary_smooth_merged_predictions', models.JSONField(default=dict)),
|
|
1540
|
+
('sequences', models.JSONField(default=dict)),
|
|
1541
|
+
('state_frames_required', models.BooleanField(default=True)),
|
|
1542
|
+
('state_frames_extracted', models.BooleanField(default=False)),
|
|
1543
|
+
('state_initial_prediction_required', models.BooleanField(default=True)),
|
|
1544
|
+
('state_initial_prediction_completed', models.BooleanField(default=False)),
|
|
1545
|
+
('state_initial_prediction_import_required', models.BooleanField(default=True)),
|
|
1546
|
+
('state_initial_prediction_import_completed', models.BooleanField(default=False)),
|
|
1547
|
+
('state_histology_required', models.BooleanField(blank=True, null=True)),
|
|
1548
|
+
('state_histology_available', models.BooleanField(default=False)),
|
|
1549
|
+
('state_follow_up_intervention_required', models.BooleanField(blank=True, null=True)),
|
|
1550
|
+
('state_follow_up_intervention_available', models.BooleanField(default=False)),
|
|
1551
|
+
('state_dataset_complete', models.BooleanField(default=False)),
|
|
1552
|
+
('is_raw', models.BooleanField(default=False)),
|
|
1553
|
+
('file', models.FileField(storage=django.core.files.storage.FileSystemStorage(location='/home/admin/test-data'), upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1554
|
+
('state_anonymized_frames_generated', models.BooleanField(default=False)),
|
|
1555
|
+
('state_ocr_required', models.BooleanField(default=True)),
|
|
1556
|
+
('state_ocr_completed', models.BooleanField(default=False)),
|
|
1557
|
+
('state_outside_validated', models.BooleanField(default=False)),
|
|
1558
|
+
('state_ocr_result_validated', models.BooleanField(default=False)),
|
|
1559
|
+
('state_sensitive_data_retrieved', models.BooleanField(default=False)),
|
|
1560
|
+
('state_censor_outside_required', models.BooleanField(default=True)),
|
|
1561
|
+
('state_censor_outside_completed', models.BooleanField(default=False)),
|
|
1562
|
+
('state_make_anonymized_video_required', models.BooleanField(default=True)),
|
|
1563
|
+
('state_make_anonymized_video_completed', models.BooleanField(default=False)),
|
|
1564
|
+
('ai_model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1565
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1566
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.patient')),
|
|
1567
|
+
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
1192
1568
|
],
|
|
1193
1569
|
options={
|
|
1194
|
-
'
|
|
1195
|
-
'verbose_name_plural': 'Network Device Log Entries',
|
|
1570
|
+
'abstract': False,
|
|
1196
1571
|
},
|
|
1197
1572
|
),
|
|
1198
1573
|
migrations.AddField(
|
|
1199
|
-
model_name='
|
|
1200
|
-
name='
|
|
1201
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.
|
|
1202
|
-
),
|
|
1203
|
-
migrations.AddField(
|
|
1204
|
-
model_name='modelmeta',
|
|
1205
|
-
name='type',
|
|
1206
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.modeltype'),
|
|
1207
|
-
),
|
|
1208
|
-
migrations.AddField(
|
|
1209
|
-
model_name='medicationschedule',
|
|
1210
|
-
name='unit',
|
|
1211
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit'),
|
|
1212
|
-
),
|
|
1213
|
-
migrations.AddField(
|
|
1214
|
-
model_name='medicationindication',
|
|
1215
|
-
name='indication_type',
|
|
1216
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='medication_indications', to='endoreg_db.medicationindicationtype'),
|
|
1217
|
-
),
|
|
1218
|
-
migrations.AddField(
|
|
1219
|
-
model_name='medicationindication',
|
|
1220
|
-
name='medication_schedules',
|
|
1221
|
-
field=models.ManyToManyField(to='endoreg_db.medicationschedule'),
|
|
1222
|
-
),
|
|
1223
|
-
migrations.AddField(
|
|
1224
|
-
model_name='medicationindication',
|
|
1225
|
-
name='sources',
|
|
1226
|
-
field=models.ManyToManyField(to='endoreg_db.informationsource'),
|
|
1227
|
-
),
|
|
1228
|
-
migrations.AddField(
|
|
1229
|
-
model_name='medication',
|
|
1230
|
-
name='default_unit',
|
|
1231
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit'),
|
|
1574
|
+
model_name='rawframe',
|
|
1575
|
+
name='video',
|
|
1576
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.rawvideofile'),
|
|
1232
1577
|
),
|
|
1233
1578
|
migrations.CreateModel(
|
|
1234
|
-
name='
|
|
1579
|
+
name='RawVideoPredictionMeta',
|
|
1235
1580
|
fields=[
|
|
1236
1581
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1237
1582
|
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1238
1583
|
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1239
1584
|
('prediction_array', models.BinaryField(blank=True, null=True)),
|
|
1585
|
+
('is_raw', models.BooleanField(default=False)),
|
|
1240
1586
|
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1241
|
-
('video', models.
|
|
1587
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.rawvideofile')),
|
|
1242
1588
|
],
|
|
1243
1589
|
options={
|
|
1244
1590
|
'abstract': False,
|
|
1245
|
-
'unique_together': {('model_meta', 'video')},
|
|
1246
1591
|
},
|
|
1247
1592
|
),
|
|
1248
|
-
migrations.AddField(
|
|
1249
|
-
model_name='legacyvideo',
|
|
1250
|
-
name='patient',
|
|
1251
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
|
|
1252
|
-
),
|
|
1253
1593
|
migrations.CreateModel(
|
|
1254
|
-
name='
|
|
1594
|
+
name='LabelRawVideoSegment',
|
|
1255
1595
|
fields=[
|
|
1256
1596
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1257
1597
|
('start_frame_number', models.IntegerField()),
|
|
1258
1598
|
('end_frame_number', models.IntegerField()),
|
|
1259
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.
|
|
1260
|
-
('
|
|
1261
|
-
('
|
|
1262
|
-
('
|
|
1599
|
+
('label', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.label')),
|
|
1600
|
+
('source', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.informationsource')),
|
|
1601
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='label_video_segments', to='endoreg_db.rawvideofile')),
|
|
1602
|
+
('prediction_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='label_video_segments', to='endoreg_db.rawvideopredictionmeta')),
|
|
1263
1603
|
],
|
|
1264
1604
|
options={
|
|
1265
1605
|
'abstract': False,
|
|
1266
1606
|
},
|
|
1267
1607
|
),
|
|
1268
1608
|
migrations.CreateModel(
|
|
1269
|
-
name='
|
|
1609
|
+
name='ReferenceProduct',
|
|
1270
1610
|
fields=[
|
|
1271
1611
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1272
|
-
('
|
|
1273
|
-
('
|
|
1274
|
-
('
|
|
1275
|
-
('
|
|
1612
|
+
('name', models.CharField(max_length=255)),
|
|
1613
|
+
('emission_factor_package', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_package', to='endoreg_db.emissionfactor')),
|
|
1614
|
+
('emission_factor_product', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_product', to='endoreg_db.emissionfactor')),
|
|
1615
|
+
('emission_factor_total', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1616
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
1617
|
+
('product_group', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='reference_product', to='endoreg_db.productgroup')),
|
|
1276
1618
|
],
|
|
1277
1619
|
),
|
|
1278
1620
|
migrations.CreateModel(
|
|
1279
|
-
name='
|
|
1621
|
+
name='ReportReaderConfig',
|
|
1280
1622
|
fields=[
|
|
1281
1623
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1282
|
-
('
|
|
1283
|
-
('
|
|
1284
|
-
('
|
|
1285
|
-
('
|
|
1286
|
-
('
|
|
1287
|
-
('
|
|
1288
|
-
('
|
|
1289
|
-
('
|
|
1290
|
-
('
|
|
1624
|
+
('locale', models.CharField(default='de_DE', max_length=10)),
|
|
1625
|
+
('text_date_format', models.CharField(default='%d.%m.%Y', max_length=10)),
|
|
1626
|
+
('first_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.firstname')),
|
|
1627
|
+
('last_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.lastname')),
|
|
1628
|
+
('cut_off_above', models.ManyToManyField(related_name='report_reader_configs_cut_off_above', to='endoreg_db.reportreaderflag')),
|
|
1629
|
+
('cut_off_below', models.ManyToManyField(related_name='report_reader_configs_cut_off_below', to='endoreg_db.reportreaderflag')),
|
|
1630
|
+
('endoscope_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_endoscope_info_line', to='endoreg_db.reportreaderflag')),
|
|
1631
|
+
('examiner_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_examiner_info_line', to='endoreg_db.reportreaderflag')),
|
|
1632
|
+
('patient_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_patient_info_line', to='endoreg_db.reportreaderflag')),
|
|
1291
1633
|
],
|
|
1292
|
-
options={
|
|
1293
|
-
'abstract': False,
|
|
1294
|
-
},
|
|
1295
1634
|
),
|
|
1296
1635
|
migrations.AddField(
|
|
1297
|
-
model_name='
|
|
1298
|
-
name='
|
|
1299
|
-
field=models.
|
|
1636
|
+
model_name='pdftype',
|
|
1637
|
+
name='cut_off_above_lines',
|
|
1638
|
+
field=models.ManyToManyField(related_name='pdf_type_cut_off_above_lines', to='endoreg_db.reportreaderflag'),
|
|
1639
|
+
),
|
|
1640
|
+
migrations.AddField(
|
|
1641
|
+
model_name='pdftype',
|
|
1642
|
+
name='cut_off_below_lines',
|
|
1643
|
+
field=models.ManyToManyField(related_name='pdf_type_cut_off_below_lines', to='endoreg_db.reportreaderflag'),
|
|
1300
1644
|
),
|
|
1301
1645
|
migrations.AddField(
|
|
1302
|
-
model_name='
|
|
1303
|
-
name='
|
|
1304
|
-
field=models.ForeignKey(
|
|
1646
|
+
model_name='pdftype',
|
|
1647
|
+
name='endoscope_info_line',
|
|
1648
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_endoscopy_info_line', to='endoreg_db.reportreaderflag'),
|
|
1305
1649
|
),
|
|
1306
1650
|
migrations.AddField(
|
|
1307
|
-
model_name='
|
|
1308
|
-
name='
|
|
1309
|
-
field=models.ForeignKey(
|
|
1651
|
+
model_name='pdftype',
|
|
1652
|
+
name='examiner_info_line',
|
|
1653
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_examiner_info_line', to='endoreg_db.reportreaderflag'),
|
|
1310
1654
|
),
|
|
1311
1655
|
migrations.AddField(
|
|
1312
|
-
model_name='
|
|
1313
|
-
name='
|
|
1314
|
-
field=models.ForeignKey(
|
|
1656
|
+
model_name='pdftype',
|
|
1657
|
+
name='patient_info_line',
|
|
1658
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_patient_info_line', to='endoreg_db.reportreaderflag'),
|
|
1315
1659
|
),
|
|
1316
1660
|
migrations.CreateModel(
|
|
1317
|
-
name='
|
|
1661
|
+
name='Rule',
|
|
1318
1662
|
fields=[
|
|
1319
1663
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1320
|
-
('
|
|
1321
|
-
('
|
|
1322
|
-
('
|
|
1323
|
-
('
|
|
1324
|
-
('
|
|
1325
|
-
('
|
|
1664
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1665
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
1666
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
1667
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1668
|
+
('attribute_key', models.CharField(max_length=255)),
|
|
1669
|
+
('attribute_dtype', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype')),
|
|
1670
|
+
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype')),
|
|
1671
|
+
],
|
|
1672
|
+
options={
|
|
1673
|
+
'verbose_name': 'Rule',
|
|
1674
|
+
'verbose_name_plural': 'Rules',
|
|
1675
|
+
},
|
|
1676
|
+
),
|
|
1677
|
+
migrations.CreateModel(
|
|
1678
|
+
name='Ruleset',
|
|
1679
|
+
fields=[
|
|
1680
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1681
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1682
|
+
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
1683
|
+
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
1684
|
+
('rules', models.ManyToManyField(to='endoreg_db.rule')),
|
|
1685
|
+
],
|
|
1686
|
+
),
|
|
1687
|
+
migrations.CreateModel(
|
|
1688
|
+
name='SensitiveMeta',
|
|
1689
|
+
fields=[
|
|
1690
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1691
|
+
('examination_date', models.DateField(blank=True, null=True)),
|
|
1692
|
+
('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1693
|
+
('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1694
|
+
('patient_dob', models.DateField(blank=True, null=True)),
|
|
1695
|
+
('examiner_first_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1696
|
+
('examiner_last_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1697
|
+
('examination_hash', models.CharField(blank=True, max_length=255, null=True)),
|
|
1698
|
+
('patient_hash', models.CharField(blank=True, max_length=255, null=True)),
|
|
1699
|
+
('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
|
|
1700
|
+
('endoscope_sn', models.CharField(blank=True, max_length=255, null=True)),
|
|
1701
|
+
('state_verified', models.BooleanField(default=False)),
|
|
1702
|
+
('state_hash_generated', models.BooleanField(default=False)),
|
|
1703
|
+
('state_names_substituted', models.BooleanField(default=False)),
|
|
1704
|
+
('state_dob_substituted', models.BooleanField(default=False)),
|
|
1705
|
+
('state_examination_date_substituted', models.BooleanField(default=False)),
|
|
1706
|
+
('state_endoscope_sn_substituted', models.BooleanField(default=False)),
|
|
1707
|
+
('state_examiners_substituted', models.BooleanField(default=False)),
|
|
1708
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1709
|
+
('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
|
|
1710
|
+
('patient_gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.gender')),
|
|
1711
|
+
('pseudo_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientexamination')),
|
|
1712
|
+
('pseudo_patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1713
|
+
],
|
|
1714
|
+
),
|
|
1715
|
+
migrations.CreateModel(
|
|
1716
|
+
name='ReportFile',
|
|
1717
|
+
fields=[
|
|
1718
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1719
|
+
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1720
|
+
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1721
|
+
('meta', models.JSONField(blank=True, null=True)),
|
|
1722
|
+
('text', models.TextField(blank=True, null=True)),
|
|
1723
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1724
|
+
('time', models.TimeField(blank=True, null=True)),
|
|
1725
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1726
|
+
('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.examiner')),
|
|
1727
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.patient')),
|
|
1728
|
+
('patient_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='report_files', to='endoreg_db.patientexamination')),
|
|
1729
|
+
('pdf_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.pdftype')),
|
|
1730
|
+
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='report_files', to='endoreg_db.sensitivemeta')),
|
|
1326
1731
|
],
|
|
1327
1732
|
options={
|
|
1328
1733
|
'abstract': False,
|
|
1329
1734
|
},
|
|
1330
1735
|
),
|
|
1331
1736
|
migrations.AddField(
|
|
1332
|
-
model_name='
|
|
1333
|
-
name='
|
|
1334
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.
|
|
1737
|
+
model_name='rawvideofile',
|
|
1738
|
+
name='sensitive_meta',
|
|
1739
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_videos', to='endoreg_db.sensitivemeta'),
|
|
1335
1740
|
),
|
|
1336
1741
|
migrations.CreateModel(
|
|
1337
|
-
name='
|
|
1742
|
+
name='RawPdfFile',
|
|
1338
1743
|
fields=[
|
|
1339
1744
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1340
|
-
('
|
|
1341
|
-
('
|
|
1342
|
-
('
|
|
1343
|
-
('
|
|
1344
|
-
('
|
|
1345
|
-
('
|
|
1346
|
-
('
|
|
1347
|
-
('
|
|
1745
|
+
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1746
|
+
('text', models.TextField(blank=True, null=True)),
|
|
1747
|
+
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1748
|
+
('file', models.FileField(storage=django.core.files.storage.FileSystemStorage(location='/home/admin/test-data'), upload_to='raw_pdf/', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
1749
|
+
('state_report_processing_required', models.BooleanField(default=True)),
|
|
1750
|
+
('state_report_processed', models.BooleanField(default=False)),
|
|
1751
|
+
('raw_meta', models.JSONField(blank=True, null=True)),
|
|
1752
|
+
('anonymized_text', models.TextField(blank=True, null=True)),
|
|
1753
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1754
|
+
('pdf_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.pdftype')),
|
|
1755
|
+
('report_file', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.reportfile')),
|
|
1756
|
+
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.sensitivemeta')),
|
|
1348
1757
|
],
|
|
1758
|
+
options={
|
|
1759
|
+
'abstract': False,
|
|
1760
|
+
},
|
|
1349
1761
|
),
|
|
1350
1762
|
migrations.CreateModel(
|
|
1351
|
-
name='
|
|
1763
|
+
name='TransportRoute',
|
|
1352
1764
|
fields=[
|
|
1353
1765
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1354
|
-
('
|
|
1355
|
-
('
|
|
1356
|
-
('
|
|
1357
|
-
('
|
|
1358
|
-
('
|
|
1359
|
-
('
|
|
1360
|
-
('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyframe')),
|
|
1361
|
-
('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyimage')),
|
|
1766
|
+
('distance', models.FloatField()),
|
|
1767
|
+
('name', models.CharField(max_length=255)),
|
|
1768
|
+
('name_de', models.CharField(max_length=255, null=True)),
|
|
1769
|
+
('name_en', models.CharField(max_length=255, null=True)),
|
|
1770
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1771
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1362
1772
|
],
|
|
1363
1773
|
),
|
|
1364
1774
|
migrations.AddField(
|
|
1365
|
-
model_name='
|
|
1366
|
-
name='
|
|
1367
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.
|
|
1775
|
+
model_name='product',
|
|
1776
|
+
name='transport_route',
|
|
1777
|
+
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.transportroute'),
|
|
1368
1778
|
),
|
|
1369
|
-
migrations.
|
|
1370
|
-
|
|
1371
|
-
|
|
1372
|
-
|
|
1779
|
+
migrations.CreateModel(
|
|
1780
|
+
name='ProductWeight',
|
|
1781
|
+
fields=[
|
|
1782
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1783
|
+
('name', models.CharField(max_length=255, null=True)),
|
|
1784
|
+
('measured', models.FloatField(null=True)),
|
|
1785
|
+
('verified', models.FloatField(null=True)),
|
|
1786
|
+
('manufacturer', models.FloatField(null=True)),
|
|
1787
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
1788
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1789
|
+
],
|
|
1373
1790
|
),
|
|
1374
1791
|
migrations.CreateModel(
|
|
1375
|
-
name='
|
|
1792
|
+
name='ProductMaterial',
|
|
1376
1793
|
fields=[
|
|
1377
1794
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1378
|
-
('
|
|
1379
|
-
('
|
|
1380
|
-
('
|
|
1381
|
-
('
|
|
1795
|
+
('component', models.CharField(max_length=255)),
|
|
1796
|
+
('quantity', models.FloatField()),
|
|
1797
|
+
('material', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.material')),
|
|
1798
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='product_materials', to='endoreg_db.product')),
|
|
1799
|
+
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1382
1800
|
],
|
|
1383
|
-
options={
|
|
1384
|
-
'verbose_name': 'Examination Time Type',
|
|
1385
|
-
'verbose_name_plural': 'Examination Time Types',
|
|
1386
|
-
'ordering': ['name'],
|
|
1387
|
-
},
|
|
1388
1801
|
),
|
|
1389
1802
|
migrations.CreateModel(
|
|
1390
|
-
name='
|
|
1803
|
+
name='PatientLabValue',
|
|
1391
1804
|
fields=[
|
|
1392
1805
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1393
|
-
('
|
|
1394
|
-
('
|
|
1395
|
-
('
|
|
1396
|
-
('
|
|
1397
|
-
('
|
|
1398
|
-
('
|
|
1806
|
+
('value', models.FloatField(blank=True, null=True)),
|
|
1807
|
+
('value_str', models.CharField(blank=True, max_length=255, null=True)),
|
|
1808
|
+
('datetime', models.DateTimeField(auto_now_add=True)),
|
|
1809
|
+
('normal_range', models.JSONField(default=dict)),
|
|
1810
|
+
('lab_value', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.labvalue')),
|
|
1811
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='lab_values', to='endoreg_db.patient')),
|
|
1812
|
+
('sample', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='values', to='endoreg_db.patientlabsample')),
|
|
1813
|
+
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1399
1814
|
],
|
|
1400
|
-
options={
|
|
1401
|
-
'verbose_name': 'Examination Time',
|
|
1402
|
-
'verbose_name_plural': 'Examination Times',
|
|
1403
|
-
'ordering': ['name'],
|
|
1404
|
-
},
|
|
1405
1815
|
),
|
|
1406
1816
|
migrations.AddField(
|
|
1407
|
-
model_name='
|
|
1408
|
-
name='
|
|
1409
|
-
field=models.
|
|
1817
|
+
model_name='medication',
|
|
1818
|
+
name='default_unit',
|
|
1819
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit'),
|
|
1410
1820
|
),
|
|
1411
1821
|
migrations.AddField(
|
|
1412
1822
|
model_name='emissionfactor',
|
|
1413
1823
|
name='unit',
|
|
1414
1824
|
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit'),
|
|
1415
1825
|
),
|
|
1416
|
-
migrations.CreateModel(
|
|
1417
|
-
name='CenterWaste',
|
|
1418
|
-
fields=[
|
|
1419
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1420
|
-
('year', models.IntegerField()),
|
|
1421
|
-
('quantity', models.FloatField()),
|
|
1422
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1423
|
-
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1424
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1425
|
-
('waste', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.waste')),
|
|
1426
|
-
],
|
|
1427
|
-
),
|
|
1428
1826
|
migrations.CreateModel(
|
|
1429
1827
|
name='CenterResource',
|
|
1430
1828
|
fields=[
|
|
@@ -1435,126 +1833,202 @@ class Migration(migrations.Migration):
|
|
|
1435
1833
|
('quantity', models.FloatField()),
|
|
1436
1834
|
('year', models.IntegerField()),
|
|
1437
1835
|
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1438
|
-
('resource', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.resource')),
|
|
1439
1836
|
('transport_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_transport_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1440
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1441
1837
|
('use_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_use_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1838
|
+
('resource', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.resource')),
|
|
1839
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1442
1840
|
],
|
|
1443
1841
|
),
|
|
1444
1842
|
migrations.CreateModel(
|
|
1445
|
-
name='
|
|
1843
|
+
name='AnonymizedFile',
|
|
1446
1844
|
fields=[
|
|
1447
1845
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1448
|
-
('
|
|
1846
|
+
('anonymized_file', models.FileField(upload_to='uploads/anonymized/')),
|
|
1847
|
+
('anonymization_date', models.DateTimeField(default=django.utils.timezone.now)),
|
|
1848
|
+
('original_file', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='anonymized_file', to='endoreg_db.uploadedfile')),
|
|
1849
|
+
],
|
|
1850
|
+
),
|
|
1851
|
+
migrations.CreateModel(
|
|
1852
|
+
name='Video',
|
|
1853
|
+
fields=[
|
|
1854
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1855
|
+
('uuid', models.UUIDField()),
|
|
1856
|
+
('original_file_name', models.CharField(max_length=255)),
|
|
1857
|
+
('video_hash', models.CharField(max_length=255, unique=True)),
|
|
1858
|
+
('uploaded_at', models.DateTimeField(auto_now_add=True)),
|
|
1859
|
+
('frame_dir', models.CharField(max_length=255)),
|
|
1860
|
+
('prediction_dir', models.CharField(max_length=255)),
|
|
1861
|
+
('predictions', models.JSONField(default=dict)),
|
|
1862
|
+
('readable_predictions', models.JSONField(default=dict)),
|
|
1863
|
+
('merged_predictions', models.JSONField(default=dict)),
|
|
1864
|
+
('smooth_merged_predictions', models.JSONField(default=dict)),
|
|
1865
|
+
('binary_smooth_merged_predictions', models.JSONField(default=dict)),
|
|
1866
|
+
('sequences', models.JSONField(default=dict)),
|
|
1867
|
+
('state_frames_required', models.BooleanField(default=True)),
|
|
1868
|
+
('state_initial_prediction_required', models.BooleanField(default=True)),
|
|
1869
|
+
('state_initial_prediction_completed', models.BooleanField(default=False)),
|
|
1870
|
+
('state_initial_prediction_import_required', models.BooleanField(default=True)),
|
|
1871
|
+
('state_initial_prediction_import_completed', models.BooleanField(default=False)),
|
|
1872
|
+
('state_histology_required', models.BooleanField(blank=True, null=True)),
|
|
1873
|
+
('state_histology_available', models.BooleanField(default=False)),
|
|
1874
|
+
('state_follow_up_intervention_required', models.BooleanField(blank=True, null=True)),
|
|
1875
|
+
('state_follow_up_intervention_available', models.BooleanField(default=False)),
|
|
1876
|
+
('state_dataset_complete', models.BooleanField(default=False)),
|
|
1877
|
+
('is_raw', models.BooleanField(default=False)),
|
|
1878
|
+
('file', models.FileField(storage=django.core.files.storage.FileSystemStorage(location='/home/admin/test-data'), upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1879
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1880
|
+
('suffix', models.CharField(blank=True, max_length=255, null=True)),
|
|
1881
|
+
('fps', models.FloatField(blank=True, null=True)),
|
|
1882
|
+
('duration', models.FloatField(blank=True, null=True)),
|
|
1883
|
+
('width', models.IntegerField(blank=True, null=True)),
|
|
1884
|
+
('height', models.IntegerField(blank=True, null=True)),
|
|
1885
|
+
('endoscope_image_x', models.IntegerField(blank=True, null=True)),
|
|
1886
|
+
('endoscope_image_y', models.IntegerField(blank=True, null=True)),
|
|
1887
|
+
('endoscope_image_width', models.IntegerField(blank=True, null=True)),
|
|
1888
|
+
('endoscope_image_height', models.IntegerField(blank=True, null=True)),
|
|
1889
|
+
('state_frames_extracted', models.BooleanField(default=False)),
|
|
1890
|
+
('meta', models.JSONField(blank=True, null=True)),
|
|
1891
|
+
('ai_model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1449
1892
|
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1450
|
-
('
|
|
1893
|
+
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='videos', to='endoreg_db.patientexamination')),
|
|
1894
|
+
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
1895
|
+
('pseudo_patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='videos', to='endoreg_db.patient')),
|
|
1896
|
+
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='videos', to='endoreg_db.sensitivemeta')),
|
|
1897
|
+
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1451
1898
|
],
|
|
1899
|
+
options={
|
|
1900
|
+
'abstract': False,
|
|
1901
|
+
},
|
|
1452
1902
|
),
|
|
1453
1903
|
migrations.AddField(
|
|
1454
|
-
model_name='
|
|
1455
|
-
name='
|
|
1456
|
-
field=models.
|
|
1904
|
+
model_name='rawvideofile',
|
|
1905
|
+
name='video',
|
|
1906
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_videos', to='endoreg_db.video'),
|
|
1457
1907
|
),
|
|
1458
1908
|
migrations.AddField(
|
|
1459
|
-
model_name='
|
|
1460
|
-
name='
|
|
1461
|
-
field=models.
|
|
1909
|
+
model_name='patientexamination',
|
|
1910
|
+
name='video',
|
|
1911
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.video'),
|
|
1912
|
+
),
|
|
1913
|
+
migrations.AddField(
|
|
1914
|
+
model_name='frame',
|
|
1915
|
+
name='video',
|
|
1916
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.video'),
|
|
1462
1917
|
),
|
|
1463
1918
|
migrations.CreateModel(
|
|
1464
|
-
name='
|
|
1919
|
+
name='VideoMeta',
|
|
1465
1920
|
fields=[
|
|
1466
1921
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1467
|
-
('
|
|
1468
|
-
('
|
|
1469
|
-
('
|
|
1470
|
-
('
|
|
1471
|
-
('
|
|
1472
|
-
('parent_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
1473
|
-
('target_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
1474
|
-
('target_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
1475
|
-
('rule_values', models.JSONField(blank=True, null=True)),
|
|
1476
|
-
('extra_parameters', models.JSONField(blank=True, null=True)),
|
|
1477
|
-
('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
|
|
1478
|
-
('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
|
|
1479
|
-
('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
1480
|
-
('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
|
|
1481
|
-
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
|
|
1482
|
-
('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
1483
|
-
('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
|
|
1922
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1923
|
+
('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
|
|
1924
|
+
('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
|
|
1925
|
+
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1926
|
+
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
1484
1927
|
],
|
|
1485
1928
|
),
|
|
1929
|
+
migrations.AddField(
|
|
1930
|
+
model_name='video',
|
|
1931
|
+
name='video_meta',
|
|
1932
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa'),
|
|
1933
|
+
),
|
|
1934
|
+
migrations.AddField(
|
|
1935
|
+
model_name='rawvideofile',
|
|
1936
|
+
name='video_meta',
|
|
1937
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa'),
|
|
1938
|
+
),
|
|
1486
1939
|
migrations.CreateModel(
|
|
1487
|
-
name='
|
|
1940
|
+
name='VideoPredictionMeta',
|
|
1488
1941
|
fields=[
|
|
1489
1942
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1490
|
-
('
|
|
1491
|
-
('
|
|
1492
|
-
('
|
|
1493
|
-
('
|
|
1494
|
-
('
|
|
1943
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1944
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1945
|
+
('prediction_array', models.BinaryField(blank=True, null=True)),
|
|
1946
|
+
('is_raw', models.BooleanField(default=False)),
|
|
1947
|
+
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1948
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.video')),
|
|
1495
1949
|
],
|
|
1950
|
+
options={
|
|
1951
|
+
'abstract': False,
|
|
1952
|
+
},
|
|
1496
1953
|
),
|
|
1497
1954
|
migrations.CreateModel(
|
|
1498
|
-
name='
|
|
1955
|
+
name='LabelVideoSegment',
|
|
1499
1956
|
fields=[
|
|
1500
1957
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1501
|
-
('
|
|
1502
|
-
('
|
|
1503
|
-
('
|
|
1504
|
-
('
|
|
1505
|
-
('
|
|
1506
|
-
('
|
|
1507
|
-
('image_type', models.CharField(default='frame', max_length=255)),
|
|
1508
|
-
('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.frame')),
|
|
1509
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
|
|
1958
|
+
('start_frame_number', models.IntegerField()),
|
|
1959
|
+
('end_frame_number', models.IntegerField()),
|
|
1960
|
+
('label', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.label')),
|
|
1961
|
+
('source', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.informationsource')),
|
|
1962
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='label_video_segments', to='endoreg_db.video')),
|
|
1963
|
+
('prediction_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='label_video_segments', to='endoreg_db.videopredictionmeta')),
|
|
1510
1964
|
],
|
|
1511
1965
|
options={
|
|
1512
1966
|
'abstract': False,
|
|
1513
1967
|
},
|
|
1514
1968
|
),
|
|
1515
1969
|
migrations.CreateModel(
|
|
1516
|
-
name='
|
|
1970
|
+
name='VideoSegmentationAnnotation',
|
|
1517
1971
|
fields=[
|
|
1518
1972
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1519
|
-
('
|
|
1520
|
-
('
|
|
1521
|
-
('
|
|
1522
|
-
('
|
|
1523
|
-
('
|
|
1524
|
-
|
|
1525
|
-
|
|
1526
|
-
|
|
1527
|
-
|
|
1973
|
+
('start_time', models.FloatField()),
|
|
1974
|
+
('stop_time', models.FloatField()),
|
|
1975
|
+
('is_true', models.BooleanField(default=True)),
|
|
1976
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.rawvideofile')),
|
|
1977
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videosegmentationlabel')),
|
|
1978
|
+
],
|
|
1979
|
+
),
|
|
1980
|
+
migrations.CreateModel(
|
|
1981
|
+
name='VideoSegmentationLabelSet',
|
|
1982
|
+
fields=[
|
|
1983
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1984
|
+
('name', models.CharField(max_length=255)),
|
|
1985
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1986
|
+
('labels', models.ManyToManyField(related_name='labelsets', to='endoreg_db.videosegmentationlabel')),
|
|
1528
1987
|
],
|
|
1529
|
-
options={
|
|
1530
|
-
'verbose_name': 'AGL Service Log Entry',
|
|
1531
|
-
'verbose_name_plural': 'AGL Service Log Entries',
|
|
1532
|
-
},
|
|
1533
1988
|
),
|
|
1534
1989
|
migrations.AddField(
|
|
1535
|
-
model_name='
|
|
1536
|
-
name='
|
|
1537
|
-
field=models.
|
|
1990
|
+
model_name='aimodel',
|
|
1991
|
+
name='video_segmentation_labelset',
|
|
1992
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.videosegmentationlabelset'),
|
|
1538
1993
|
),
|
|
1539
1994
|
migrations.CreateModel(
|
|
1540
|
-
name='
|
|
1995
|
+
name='CenterWaste',
|
|
1541
1996
|
fields=[
|
|
1542
1997
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1543
|
-
('
|
|
1544
|
-
('
|
|
1998
|
+
('year', models.IntegerField()),
|
|
1999
|
+
('quantity', models.FloatField()),
|
|
2000
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
2001
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
2002
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
2003
|
+
('waste', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.waste')),
|
|
1545
2004
|
],
|
|
1546
2005
|
),
|
|
2006
|
+
migrations.CreateModel(
|
|
2007
|
+
name='ImageClassificationPrediction',
|
|
2008
|
+
fields=[
|
|
2009
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
2010
|
+
('value', models.BooleanField()),
|
|
2011
|
+
('confidence', models.FloatField()),
|
|
2012
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
2013
|
+
('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.frame')),
|
|
2014
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.label')),
|
|
2015
|
+
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.modelmeta')),
|
|
2016
|
+
],
|
|
2017
|
+
options={
|
|
2018
|
+
'unique_together': {('label', 'frame', 'model_meta')},
|
|
2019
|
+
},
|
|
2020
|
+
),
|
|
1547
2021
|
migrations.AddIndex(
|
|
1548
|
-
model_name='
|
|
1549
|
-
index=models.Index(fields=['video', 'frame_number'], name='
|
|
2022
|
+
model_name='rawframe',
|
|
2023
|
+
index=models.Index(fields=['video', 'frame_number'], name='endoreg_db__video_i_b5dc58_idx'),
|
|
1550
2024
|
),
|
|
1551
2025
|
migrations.AlterUniqueTogether(
|
|
1552
|
-
name='
|
|
2026
|
+
name='rawframe',
|
|
1553
2027
|
unique_together={('video', 'frame_number')},
|
|
1554
2028
|
),
|
|
1555
2029
|
migrations.AlterUniqueTogether(
|
|
1556
|
-
name='
|
|
1557
|
-
unique_together={('
|
|
2030
|
+
name='rawvideopredictionmeta',
|
|
2031
|
+
unique_together={('model_meta', 'video')},
|
|
1558
2032
|
),
|
|
1559
2033
|
migrations.AddIndex(
|
|
1560
2034
|
model_name='frame',
|
|
@@ -1564,4 +2038,8 @@ class Migration(migrations.Migration):
|
|
|
1564
2038
|
name='frame',
|
|
1565
2039
|
unique_together={('video', 'frame_number')},
|
|
1566
2040
|
),
|
|
2041
|
+
migrations.AlterUniqueTogether(
|
|
2042
|
+
name='videopredictionmeta',
|
|
2043
|
+
unique_together={('model_meta', 'video')},
|
|
2044
|
+
),
|
|
1567
2045
|
]
|