endoreg-db 0.5.3__py3-none-any.whl → 0.6.1__py3-none-any.whl

endoreg_db-0.6.1.dist-info/METADATA

@@ -0,0 +1,151 @@
+Metadata-Version: 2.4
+Name: endoreg-db
+Version: 0.6.1
+Summary: EndoReg Db Django App
+License-File: LICENSE
+Requires-Python: >=3.11
+Requires-Dist: agl-report-reader>=0.4.0
+Requires-Dist: django-bootstrap5>=24.3
+Requires-Dist: django-cors-headers>=4.7.0
+Requires-Dist: django-extensions>=3.2.3
+Requires-Dist: django>=5.1.3
+Requires-Dist: djangorestframework>=3.15.2
+Requires-Dist: faker>=32.1.0
+Requires-Dist: icecream>=2.1.4
+Requires-Dist: numpy>=2.1.3
+Requires-Dist: opencv-python>=4.10.0.84
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: pillow>=11.0.0
+Requires-Dist: pydantic>=2.10.6
+Requires-Dist: pytesseract>=0.3.13
+Requires-Dist: python-ffmpeg>=2.0.12
+Requires-Dist: pytorch-lightning>=2.4.0
+Requires-Dist: pyyaml>=6.0.2
+Requires-Dist: scikit-learn>=1.5.2
+Requires-Dist: scipy>=1.14.1
+Requires-Dist: tesseract>=0.1.3
+Requires-Dist: tqdm>=4.67.0
+Requires-Dist: urllib3>=2.2.3
+Description-Content-Type: text/markdown
+
+# EndoregDB - Professional Data Infrastructure for Clinical Research
+
+EndoregDB is a comprehensive database framework designed to manage medical and research-related data for clinical trials. This repository focuses on efficient data processing, automated deployment, security, and reproducibility, offering a flexible setup for local development environments as well as distributed systems. It supports the integration of AI/ML tools and advanced image and report processing.
+
+This infrastructure was originally designed for clinical research studies and is optimized for handling large data volumes, including:
+
+- Medical reports,
+- Patient imaging and video data,
+- Clinical product and treatment data,
+  and more.
+
+## 🚀 Key Features
+
+### System Architecture
+
+- **Modular Design**: Built on scalable and reusable components to simplify integration into various environments.
+- **Multi-System Support**: Manages configurations for local workstations and production servers.
+- **Role-Specific Configuration**: Predefined roles for common use cases:
+  - Medical data processing systems
+  - AI/ML model deployment
+  - Research workstation configuration
+
+### Security & Data Management
+
+- **Data Encryption**: All sensitive data is encrypted, and privacy policies are enforced.
+- **Impermanence**: Stateless system configuration with persistence for critical data.
+- **Access Control**: Role-based access and identity management integration.
+
+### Data and Processing Environment
+
+- **Data Processing**: Optimized for processing medical datasets with preprocessing tools.
+- **AI/ML Support**:
+  - Integration of machine learning tools for predictive analysis.
+  - TensorFlow, PyTorch, and other frameworks supported for model training.
+- **Image/Video Processing**: Support for analyzing patient images and clinical videos.
+
+### Development Tools & Infrastructure
+
+- **Data Science Toolchains**: Pre-configured environments for data processing, analysis, and visualization.
+- **Monitoring & Logging**: Setup for continuous monitoring and logging to ensure system stability and performance.
+
+---
+
+## 🛠 Getting Started
+
+### Prerequisites
+
+- A Linux-based system (Ubuntu/Debian recommended) or NixOS
+- Hardware with sufficient storage for data processing (at least 1 TB recommended)
+
+### Quick Start
+
+1. Clone the repository:
+
+   ```bash
+   git clone https://github.com/wg-lux/endoreg-db.git
+   cd endoreg-db
+   ```
+
+2. Set up your Python environment:
+   _TODO_: Explain Devenv / point to other docs
+
+   ```bash
+   direnv allow
+   ```
+
+3. Run tests:
+   Call Devenv Script to run tests
+
+   ```bash
+   runtests
+   ```
+
+---
+
+## 📁 Repository Structure
+
+```
+endoreg-db/
+├── endoreg_db/                # Main Django app for medical data
+│   ├── case_generator/        # Sample case generator
+│   ├── data/                  # Medical knowledge base
+│   ├── management/            # Data wrangling operations
+│   ├── models/                # Data models
+│   ├── migrations/            # Database migrations
+│   └── serializers/           # Serializers for data
+├── .gitignore                 # Git ignore file for unnecessary files
+└── README.md                  # Project description and setup instructions
+```
+
+---
+
+## 🔒 Security Features
+
+- **Data Encryption**: All sensitive patient data is encrypted.
+- **Role-Based Access Control**: Configurable roles for managing access to various parts of the system.
+- **Logging & Auditing**: Comprehensive logging system that tracks user activities and data changes.
+
+---
+
+## 🖥️ Supported Systems
+
+- **Workstations**: Local development or research workstations with low data processing demands.
+- **Servers**: Scalable server infrastructure for processing large data volumes, integrated with cloud services for scalability.
+
+---
+
+## 🛟 Support
+
+For issues and questions:
+
+- Create an issue in the repository
+- Review the Deployment Guide for common issues
+
+---
+
+## 📜 License
+
+MIT - see LICENSE
+
+---

endoreg_db-0.6.1.dist-info/RECORD

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+endoreg_db-0.6.1.dist-info/METADATA,sha256=sN5R83DO82sHwaNZxFBJ1HL4hKEDoLKpaO2xVy_nwEA,4936
+endoreg_db-0.6.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+endoreg_db-0.6.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+endoreg_db-0.6.1.dist-info/RECORD,,

{endoreg_db-0.5.3.dist-info → endoreg_db-0.6.1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.26.3
+Generator: hatchling 1.27.0
 Root-Is-Purelib: true
 Tag: py3-none-any

endoreg_db/data/active_model/data.yaml

@@ -1,3 +0,0 @@
-- model: endoreg_db.active_model
-  data:
-    - name: "multilabel_image_classification"

endoreg_db/data/label/label-set/data.yaml

@@ -1,18 +0,0 @@
-- model: endoreg_db.LabelSet
-  fields:
-    name: "multilabel_classification"
-    version: 0
-    labels: [
-      "appendix",
-      "ileocecal_valve",
-      "polyp",
-      "water_jet",
-      "digital_chromo_endoscopy",
-      "instrument",
-      "wound",
-      "blood",
-      "ileum",
-      "low_quality",
-      "clip",
-      "outside",
-    ]