endoreg-db 0.3.4__py3-none-any.whl → 0.3.5__py3-none-any.whl

endoreg_db/data/lab_value/electrolytes.yaml

@@ -0,0 +1,190 @@
+# Electrolytes
+# https://emedicine.medscape.com/article/2172316-overview?form=fpf 2024/04/27
+- model: endoreg_db.lab_value
+  fields:
+    name: "ammonia"
+    name_de: "Ammoniak"
+    name_en: "Ammonia"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 40, "max": 70}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "ceruloplasmin"
+    name_de: "Ceruloplasmin"
+    name_en: "Ceruloplasmin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 25, "max": 43}
+
+- model: endoreg_db.lab_value  
+  fields:
+    name: "chloride"
+    name_de: "Chlorid"
+    name_en: "Chloride"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 95, "max": 105}
+
+- model: endoreg_db.lab_value  
+  fields:
+    name: "copper"
+    name_de: "Kupfer"
+    name_en: "Copper"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 100, "max": 200}
+
+- model: endoreg_db.lab_value  
+  fields:
+    name: "creatinine"
+    name_de: "Kreatinin"
+    name_en: "Creatinine"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0.8, "max": 1.3}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "blood_urea_nitrogen"
+    name_de: "Harnstoff"
+    name_en: "Blood Urea Nitrogen"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 8, "max": 20}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "ferritin"
+    name_de: "Ferritin"
+    name_en: "Ferritin"
+    default_unit: "nanogram per mililiter"
+    default_normal_range: {"min": 24, "max": 336}
+
+# Glucose:70–99 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "glucose"
+    name_de: "Glukose"
+    name_en: "Glucose"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 70, "max": 99}
+# Inorganic phosphorous: 3-4.5 mg/dL
+- model: endoreg_db.lab_value
+  fields:
+    name: "inorganic_phosphorous"
+    name_de: "Anorganisches Phosphor"
+    name_en: "Inorganic Phosphorous"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 3, "max": 4.5}
+
+# Ionized calcium: 1.12–1.23 mmol/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "ionized_calcium"
+    name_de: "Ionisiertes Calcium"
+    name_en: "Ionized Calcium"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 1.12, "max": 1.23}
+
+# Magnesium: 1.6–2.6 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "magnesium"
+    name_de: "Magnesium"
+    name_en: "Magnesium"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 1.6, "max": 2.6}
+
+# Phosphate: 2.5 to 4.5 mg/dL (0.81 to 1.45 mmol/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "phosphate"
+    name_de: "Phosphat"
+    name_en: "Phosphate"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 2.5, "max": 4.5}
+
+# Potassium: 3.5–5.0 mEq/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "potassium"
+    name_de: "Kalium"
+    name_en: "Potassium"
+    default_unit: "miliequivalent per liter"
+    default_normal_range: {"min": 3.5, "max": 5.0}
+
+# Pyruvate: .08-0.16 mmol/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "pyruvate"
+    name_de: "Pyruvat"
+    name_en: "Pyruvate"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 0.08, "max": 0.16}
+
+# Sodium: 136–145 mEq/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "sodium"
+    name_de: "Natrium"
+    name_en: "Sodium"
+    default_unit: "miliequivalent per liter"
+    default_normal_range: {"min": 136, "max": 145}
+
+# Total calcium: 2-2.6 mmol/L (9-10.5 mg/dL) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_calcium"
+    name_de: "Gesamtcalcium"
+    name_en: "Total Calcium"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 2, "max": 2.6}
+
+# Total iron-binding capacity: 250–310 μg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_iron_binding_capacity"
+    name_de: "Gesamteisenbindungskapazität"
+    name_en: "Total Iron-binding Capacity"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 250, "max": 310}
+
+# Total serum iron: 50–150 μg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_serum_iron"
+    name_de: "Gesamteisenspiegel"
+    name_en: "Total Serum Iron"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 50, "max": 150}
+
+
+# Transferrin: 200–400 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "transferrin"
+    name_de: "Transferrin"
+    name_en: "Transferrin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 200, "max": 400}
+
+# Urea: 1.2-3 mmol/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "urea"
+    name_de: "Harnstoff"
+    name_en: "Urea"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 1.2, "max": 3 }
+# Uric acid: 0.18-0.48 mmol/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "uric_acid"
+    name_de: "Harnsäure"
+    name_en: "Uric Acid"
+    default_unit: "milimole per liter"
+    default_normal_range: {"min": 0.18, "max": 0.48}
+# Zinc: 75–140 μg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "zinc"
+    name_de: "Zink"
+    name_en: "Zinc"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 75, "max": 140}

endoreg_db/data/lab_value/gastrointestinal_function.yaml

@@ -0,0 +1,121 @@
+
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "albumin"
+    name_de: "Albumin"
+    name_en: "Albumin"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 3.5, "max": 5.5}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "alkaline_phosphatase"
+    name_de: "Alkalische Phosphatase"
+    name_en: "Alkaline Phosphatase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 30, "max": 120}
+
+# ALT and GPT are the same enzyme
+- model: endoreg_db.lab_value 
+  fields:
+    name: "alanine_aminotransferase"
+    name_de: "Alanin-Aminotransferase"
+    name_en: "Alanine Aminotransferase"
+    abbreviation: "ALT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "glutamic_pyruvic_transaminase"
+    name_de: "Glutamat-Pyruvat-Transaminase"
+    name_en: "Glutamic-Pyruvic Transaminase"
+    abbreviation: "GPT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+
+- model: endoreg_db.lab_value 
+  fields:
+    name: "amylase"
+    name_de: "Amylase"
+    name_en: "Amylase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 25, "max": 125}
+
+# Aspartate aminotransferase (AST): 10–40 U/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "aspartate_aminotransferase"
+    name_de: "Aspartat-Aminotransferase"
+    name_en: "Aspartate Aminotransferase"
+    abbreviation: "AST"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+
+# AST and GOT are the same
+- model: endoreg_db.lab_value
+  fields:
+    name: "glutamic_oxaloacetic_transaminase"
+    name_de: "Glutamat-Oxalacetat-Transaminase"
+    name_en: "Glutamic-Oxaloacetic Transaminase"
+    abbreviation: "GOT"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 40}
+
+
+# Direct bilirubin: 0.1–0.3 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "direct_bilirubin"
+    name_de: "Direktes Bilirubin"
+    name_en: "Direct Bilirubin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0.1, "max": 0.3}
+
+# Gamma glutamyl transferase: Female: 8–40 U/L; male: 9–50 U/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "gamma_glutamyl_transferase"
+    name_de: "Gamma-Glutamyl-Transferase"
+    name_en: "Gamma-Glutamyl Transferase"
+    abbreviation: "GGT"
+    default_unit: "units per liter"
+    normal_range_gender_dependent: true
+    default_normal_range: {
+      "female": {
+        "min": 8,
+        "max": 40
+      },
+      "male": {
+        "min": 9,
+        "max": 50
+      }
+    }
+
+# Lipase: 10–140 U/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "lipase"
+    name_de: "Lipase"
+    name_en: "Lipase"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 10, "max": 140}
+
+# Total bilirubin: 0.3–1.0 mg/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_bilirubin"
+    name_de: "Gesamtbilirubin"
+    name_en: "Total Bilirubin"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 0.3, "max": 1.0}
+
+# Total protein: 5.5–9.0 g/dL 
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_protein"
+    name_de: "Gesamtprotein"
+    name_en: "Total Protein"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 5.5, "max": 9.0}

endoreg_db/data/lab_value/hematology.yaml

@@ -0,0 +1,169 @@
+# Hematology
+# Hemoglobin: Female: 12–16 g/dL; male: 14–18 g/dL
+- model: endoreg_db.lab_value
+  fields:
+    name: "hemoglobin"
+    name_de: "Hämoglobin"
+    name_en: "Hemoglobin"
+    abbreviation: "Hb"
+    normal_range_gender_dependent: true
+    default_unit: "gram per deciliter"
+    default_normal_range: {
+      "male": {
+        "min": 14, "max": 18
+      },
+      "female": {
+        "min": 12, "max": 16
+      }
+    }
+
+# Hematocrit Female: 37%–47%; male: 42%–50% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "hematocrit"
+    name_de: "Hämatokrit"
+    name_en: "Hematocrit"
+    abbreviation: "Hct"
+    normal_range_gender_dependent: true
+    default_unit: "percent"
+    default_normal_range: {
+      "male": {
+        "min": 42, "max": 50
+      },
+      "female": {
+        "min": 37, "max": 47
+      }
+    }
+
+# Glycosylated hemoglobin 4.0%–5.6% 
+- model: 
+  fields:
+    name: "glycosylated_hemoglobin"
+    name_de: "Glykosyliertes Hämoglobin"
+    name_en: "Glycosylated Hemoglobin"
+    abbreviation: "HbA1c"
+    default_unit: "percent"
+    default_normal_range: {"min": 4.0, "max": 5.6}
+
+# Mean corpuscular volume (MCV): 80–98 fL
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_volume"
+    name_de: "Mittleres korpuskuläres Volumen"
+    name_en: "Mean Corpuscular Volume"
+    abbreviation: "MCV"
+    default_unit: "femtoliter"
+    default_normal_range: {"min": 80, "max": 98}
+
+# Red blood cell distribution width (RDW): 9.0%–14.5% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "red_blood_cell_distribution_width"
+    name_de: "Erythrozytenverteilungsbreite"
+    name_en: "Red Blood Cell Distribution Width"
+    abbreviation: "RDW"
+    default_unit: "percent"
+    default_normal_range: {"min": 9.0, "max": 14.5}
+
+# Mean corpuscular hemoglobin (MCH): 28–32 pg 
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin"
+    name_de: "Mittleres korpuskuläres Hämoglobin"
+    name_en: "Mean Corpuscular Hemoglobin"
+    abbreviation: "MCH"
+    default_unit: "picogram"
+    default_normal_range: {"min": 28, "max": 32}
+
+# Mean corpuscular hemoglobin concentration (MCHC): 33–36 g/dL  
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin_concentration"
+    name_de: "Mittleres korpuskuläres Hämoglobinkonzentration"
+    name_en: "Mean Corpuscular Hemoglobin Concentration"
+    abbreviation: "MCHC"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 33, "max": 36}
+
+
+# Reticulocytes 0.5%–1.5% of red cells 
+- model: endoreg_db.lab_value
+  fields:
+    name: "reticulocytes"
+    name_de: "Retikulozyten"
+    name_en: "Reticulocytes"
+    abbreviation: "Reti"
+    default_unit: "percent"
+    default_normal_range: {"min": 0.5, "max": 1.5}
+
+# White blood cells (WBC) 4-10 x 10^9/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "white_blood_cells"
+    name_de: "Leukozyten"
+    name_en: "White Blood Cells"
+    abbreviation: "WBC"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 4, "max": 10}
+
+# Neutrophils: 2-8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "neutrophils"
+    name_de: "Neutrophile"
+    name_en: "Neutrophils"
+    abbreviation: "Neu"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 2, "max": 8}
+
+
+# Bands: < 1 x 109/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "bands"
+    name_de: "Stabkernige"
+    name_en: "Bands"
+    abbreviation: "Bands"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"max": 1}
+
+# Lymphocytes: 1000 to 4800/mcL (1 to 4.8 × 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "lymphocytes"
+    name_de: "Lymphozyten"
+    name_en: "Lymphocytes"
+    abbreviation: "Lym"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 1, "max": 4.8}
+
+
+# Monocytes: 0.2-0.8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "monocytes"
+    name_de: "Monozyten"
+    name_en: "Monocytes"
+    abbreviation: "Mon"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 0.2, "max": 0.8}
+
+# Eosinophils: .000-0.600 th/uL (0-6%) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "eosinophils"
+    name_de: "Eosinophile"
+    name_en: "Eosinophils"
+    abbreviation: "Eos"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"max": 0.6}
+
+# Platelets: 150,000-350,000/µL (150-350 x 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "platelets"
+    name_de: "Thrombozyten"
+    name_en: "Platelets"
+    abbreviation: "Plt"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 150, "max": 350}

endoreg_db/data/lab_value/hormones.yaml

@@ -0,0 +1,53 @@
+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroxine_binding_globulin"
+    name_de: "Thyroxin-bindendes Globulin"
+    name_en: "Thyroxine-binding globulin"
+    abbreviation: "TBG"
+    default_unit: "microgram per mililiter"
+    default_normal_range: {"min": 12, "max": 27}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroid_stimulating_hormone"
+    name_de: "Thyroidea-stimulierendes Hormon"
+    name_en: "Thyroid-stimulating hormone"
+    abbreviation: "TSH"
+    default_unit: "microinternational units per mililiter"
+    default_normal_range: {"min": 0.5, "max": 4.0}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_thyroxine"
+    name_de: "Gesamtthyroxin"
+    name_en: "Total Thyroxine"
+    abbreviation: "T4"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 5, "max": 12}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_triiodothyronine"
+    name_de: "Gesamttriiodthyronin"
+    name_en: "Total Triiodothyronine"
+    abbreviation: "T3"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 80, "max": 180}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_triiodothyronine"
+    name_de: "Freies Triiodthyronin"
+    name_en: "Free Triiodothyronine"
+    abbreviation: "fT3"
+    default_unit: "picogram per mililiter"
+    default_normal_range: {"min": 2.3, "max": 4.2}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_thyroxine"
+    name_de: "Freies Thyroxin"
+    name_en: "Free Thyroxine"
+    abbreviation: "fT4"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 0.8, "max": 2.8}

endoreg_db/data/lab_value/lipids.yaml

@@ -0,0 +1,44 @@
+# Triglycerides: ˂150 mg/dL
+# Total cholesterol: ˂200 mg/dL
+# High-density lipoprotein (HDL): Female: ˂50 mg/dL; male: ˂40 mg/dL
+# Low-density lipoprotein (LDL): ˂100 mg/dL
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "triglycerides"
+    name_de: "Triglyceride"
+    name_en: "Triglycerides"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 150}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_cholesterol"
+    name_de: "Gesamtcholesterin"
+    name_en: "Total Cholesterol"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 200}
+
+- model: endoreg_db.lab_value 
+  fields:
+    name: "high_density_lipoprotein"
+    name_de: "High-Density-Lipoprotein"
+    name_en: "High-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    normal_range_gender_dependent: true
+    default_normal_range: {
+      "female": {
+        "max": 50
+      },
+      "male": {
+        "max": 40
+      }
+    }
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "low_density_lipoprotein"
+    name_de: "Low-Density-Lipoprotein"
+    name_en: "Low-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 100}

endoreg_db/data/lab_value/misc.yaml

@@ -0,0 +1,30 @@
+# C-reactive protein: < 0.5 mg/dL 
+# D-dimer: ≤ 300 ng/mL (300 µg/L) 
+# Lactate dehydrogenase (LDH): 60-160 U/L
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "c_reactive_protein"
+    name_de: "C-reaktives Protein"
+    name_en: "C-reactive protein"
+    abbreviation: "CRP"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 0.5}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "d_dimer"
+    name_de: "D-Dimer"
+    name_en: "D-dimer"
+    abbreviation: "D-Dimer"
+    default_unit: "nanogram per mililiter"
+    default_normal_range: {"max": 300}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "lactate_dehydrogenase"
+    name_de: "Laktatdehydrogenase"
+    name_en: "Lactate dehydrogenase"
+    abbreviation: "LDH"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 60, "max": 160}

endoreg_db/data/lab_value/renal_function.yaml

@@ -0,0 +1,11 @@
+- model: endoreg_db.lab_value
+  fields:
+    name: "estimated_glomerular_filtration_rate"
+    name_de: "Geschätzte Glomeruläre Filtrationsrate"
+    name_en: "estimated glomerular filtration rate"
+    abbreviation: "eGFR"
+    default_unit: "mililiter per minute per 1.73m^2"
+    default_normal_range: {
+      "min": 60,
+      "max": 120
+    }