endoreg-db 0.3.4__py3-none-any.whl → 0.3.5__py3-none-any.whl

endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml

@@ -0,0 +1,48 @@
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2020
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2020
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2021
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2021
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2022
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2022
+  model: CenterWaste

endoreg_db/data/disease/cardiovascular.yaml

@@ -0,0 +1,37 @@
+- model: endoreg_db.disease
+  fields:
+    name: "hypertension"
+    name_de: "Arterielle Hypertonie"
+    name_en: "Hypertension"
+
+- model: endoreg_db.disease
+  fields:
+    name: "coronary_artery_disease"
+    name_de: "Koronare Herzkrankheit"
+    name_en: "Coronary Artery Disease"
+
+- model: endoreg_db.disease
+  fields:
+    name: "congestive_heart_failure"
+    name_de: "Chron. Herzinsuffizienz"
+    name_en: "Congestive Heart Failure"
+
+# diabetes mellitus I
+- model: endoreg_db.disease
+  fields:
+    name: "diabetes_mellitus_I"
+    name_de: "Diabetes mellitus Typ I"
+    name_en: "Diabetes Mellitus Type I"
+
+# diabetes mellitus II
+- model: endoreg_db.disease
+  fields:
+    name: "diabetes_mellitus_II"
+    name_de: "Diabetes mellitus Typ II"
+    name_en: "Diabetes Mellitus Type II"
+
+- model: endoreg_db.disease
+  fields:
+    name: "non_valvular_atrial_fibrillation"
+    name_de: "nicht valvuläres Vorhofflimmern"
+    name_en: "non valvular Atrial Fibrillation"

endoreg_db/data/disease/hepatology.yaml

@@ -0,0 +1,5 @@
+- model: endoreg_db.disease
+  fields:
+    name: "liver_cirrhosis"
+    name_de: "Leberzirrhose"
+    name_en: "Liver Cirrhosis"

endoreg_db/data/disease/misc.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease
+  fields:
+    name: "malignoma_unspecified"
+    name_de: "Malignom, nicht näher bezeichnet"
+    name_en: "Malignoma, unspecified"
+    

endoreg_db/data/disease/renal.yaml

@@ -0,0 +1,5 @@
+- model: endoreg_db.disease
+  fields:
+    name: "chronic_kidney_disease"
+    name_de: "Chronische Nierenerkrankung"
+    name_en: "Chronic Kidney Disease"

endoreg_db/data/disease_classification/chronic_kidney_disease.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease_classification
+  fields:
+    name: "chronic_kideny_disease_kdigo"
+    name_de: "Chronische Nierenerkrankung (KDIGO)"
+    name_en: "Chronic Kidney Disease (KDIGO)"
+    disease: "chronic_kidney_disease"

endoreg_db/data/disease_classification/coronary_vessel_disease.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease_classification
+  fields:
+    name: "coronary_artery_disease_base_classification"
+    name_de: "Koronare Gefäßerkrankung (N-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (N-Vessel Disease)"
+    disease: "coronary_artery_disease"

endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml

@@ -0,0 +1,41 @@
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_1"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 1)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 1)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_2"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 2)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 2)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_3a"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3a)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_3b"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3b)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_4"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 4)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 4)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_5"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 5)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 5)"
+    disease_classification: "chronic_kideny_disease_kdigo"

endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml

@@ -0,0 +1,20 @@
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_1_ge"
+    name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (1-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_2_ge"
+    name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (2-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_3_ge"
+    name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (3-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"

endoreg_db/data/distribution/date/patient.yaml

@@ -0,0 +1,7 @@
+- model: endoreg_db.date_value_distribution
+  fields:
+    name: "age-screening_colo_population"
+    distribution_type: "uniform"
+    mode: "timedelta"
+    timedelta_days_min: 18250
+    timedelta_days_max: 32485

endoreg_db/data/distribution/single_categorical/patient.yaml

@@ -0,0 +1,7 @@
+- model: endoreg_db.single_categorical_value_distribution
+  fields:
+    name: "gender_random"
+    categories: {
+      "male": 0.5,
+      "female": 0.5
+    }

endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml

@@ -0,0 +1,132 @@
+- fields:
+    name: material_emission_cardboard
+    unit: kilogram
+    value: 0.828
+  model: EmissionFactor
+- fields:
+    name: material_emission_foil
+    unit: kilogram
+    value: 2.574
+  model: EmissionFactor
+- fields:
+    name: material_emission_gold
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_metal
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_nickel
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_paper
+    unit: kilogram
+    value: 0.919
+  model: EmissionFactor
+- fields:
+    name: material_emission_paper_coated
+    unit: kilogram
+    value: 2.0175
+  model: EmissionFactor
+- fields:
+    name: material_emission_plastic
+    unit: kilogram
+    value: 3.116
+  model: EmissionFactor
+- fields:
+    name: material_emission_plastic_coated
+    unit: kilogram
+    value: 3.116
+  model: EmissionFactor
+- fields:
+    name: material_emission_silicone
+    unit: kilogram
+    value: 2.0
+  model: EmissionFactor
+- fields:
+    name: material_emission_steel
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_tantal
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_textile
+    unit: kilogram
+    value: 2.0
+  model: EmissionFactor
+- fields:
+    name: material_emission_titan
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_gas
+    unit: liter
+    value: 2.01574
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_oil
+    unit: cubic_meter
+    value: 3.17522
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_gas
+    unit: liter
+    value: 0.3434
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_oil
+    unit: cubic_meter
+    value: 0.69723
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    value: 0.05048
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+
+- fields:
+    name: transport_product_emission_generic_europe
+    unit: "kilogram"
+    value: 0.13213
+  model: EmissionFactor
+- fields:
+    name: transport_product_emission_generic_overseas
+    unit: "kilogram"
+    value: 1.308373
+  model: EmissionFactor
+- fields:
+    name: waste_emission_medical
+    unit: "kilogram"
+    value: 0.0212801937984496
+  model: EmissionFactor
+
+- fields:
+    name: waste_emission_general
+    unit: "kilogram"
+    value: 0.0212801937984496
+  model: EmissionFactor

endoreg_db/data/event/cardiology.yaml

@@ -0,0 +1,28 @@
+- model: endoreg_db.event
+  fields:
+    name: "coro_des_implantation"
+    name_de: "Koronarstent-Implantation (DES)"
+    name_en: "Coronary Stent Implantation (DES)"
+- model: endoreg_db.event
+  fields:
+    name: "coro_bms_implantation"
+    name_de: "Koronarstent-Implantation (BMS)"
+    name_en: "Coronary Stent Implantation (BMS)"
+- model: endoreg_db.event
+  fields:
+    name: "complication_coro_stent_thrombosis"
+    name_de: "Komplikation: Koronar Stent Thrombose"
+    name_en: "Complication: Coronary Stent Thrombosis"
+
+- model: endoreg_db.event
+  fields:
+    name: "pulmonary_embolism"
+    name_de: "Lungenembolie"
+    name_en: "Pulmonary Embolism"
+
+- model: endoreg_db.event
+  fields:
+    name: "deep_vein_thrombosis"
+    name_de: "Tiefe Beinvenenthrombose"
+    name_en: "Deep Vein Thrombosis"
+    

endoreg_db/data/event/neurology.yaml

@@ -0,0 +1,14 @@
+
+- model: endoreg_db.event
+  fields:
+    name: "stroke"
+    name_de: "Schlaganfall"
+    name_en: "Stroke"
+
+- model: endoreg_db.event
+  fields:
+    name: "transient_ischemic_attack"
+    name_de: "Transitorische ischämische Attacke"
+    name_en: "Transient Ischemic Attack"
+    
+    

endoreg_db/data/event/surgery.yaml

@@ -0,0 +1,13 @@
+- model: endoreg_db.event
+  fields:
+    name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
+    name_de: "Hüft-TEP Operation"
+    name_en: "Hip replacement surgery"
+    description: "Hip replacement surgery"
+
+- model: endoreg_db.event
+  fields:
+    name: "knee_replacement_surgery"
+    name_de: "Knie-TEP Operation"
+    name_en: "Knee replacement surgery"
+    description: "Knee replacement surgery"

endoreg_db/data/event/thrombembolism.yaml

@@ -0,0 +1,20 @@
+- model: endoreg_db.event
+  fields:
+    name: "deep_vein_thrombosis"
+    name_de: "Tiefe Beinvenenthrombose"
+    name_en: "Deep Vein Thrombosis"
+    description: "Deep Vein Thrombosis"
+
+- model: endoreg_db.event
+  fields:
+    name: "pulmonary_embolism"
+    name_de: "Lungenembolie"
+    name_en: "Pulmonary Embolism"
+    description: "Pulmonary Embolism"
+
+- model: endoreg_db.event
+  fields:
+    name: "recurrent_thrombembolism"
+    name_de: "Rezidivierende Thrombembolien"
+    name_en: "Recurrent Thrombembolism"
+    description: "Recurrent Thrombembolism"

endoreg_db/data/examination/examinations/data.yaml

@@ -12,6 +12,55 @@
     name: "gastroscopy"
     name_de: "Gastroskopie"
     name_en: "Gastroscopy"
+    examination_types: [
+      "endoscopy"
+    ]
+
+# endosonography_upper_gi
+- model: report.Examination
+  fields:
+    name: "endosonography_upper_gi"
+    name_de: "Endosonographie oberer GI-Trakt"
+    name_en: "Endosonography Upper GI Tract"
+    examination_types: [
+      "endoscopy"
+    ]
+
+- model: report.Examination
+  fields:
+    name: "endosonography_lower_gi"
+    name_de: "Endosonographie unterer GI-Trakt"
+    name_en: "Endosonography Lower GI Tract"
+    examination_types: [
+      "endoscopy"
+    ]
+
+# ERCP
+- model: report.Examination
+  fields:
+    name: "ercp"
+    name_de: "ERCP"
+    name_en: "ERCP"
+    examination_types: [
+      "endoscopy"
+    ]
+
+# small bowel endoscopy
+- model: report.Examination
+  fields:
+    name: "small_bowel_endoscopy"
+    name_de: "Dünndarmendoskopie"
+    name_en: "Small Bowel Endoscopy"
+    examination_types: [
+      "endoscopy"
+    ]
+
+# capsule endoscopy
+- model: report.Examination
+  fields:
+    name: "capsule_endoscopy"
+    name_de: "Kapselendoskopie"
+    name_en: "Capsule Endoscopy"
     examination_types: [
       "endoscopy"
     ]

endoreg_db/data/gender/data.yaml

@@ -0,0 +1,18 @@
+- model: endoreg_db.gender
+  fields:
+    name: "male"
+    name_de: "männlich"
+    name_en: "male"
+    abbreviation: "m"
+- model: endoreg_db.gender
+  fields:
+    name: "female"
+    name_de: "weiblich"
+    name_en: "female"
+    abbreviation: "f"
+- model: endoreg_db.gender
+  fields:
+    name: "other"
+    name_de: "andere"
+    name_en: "other"
+    abbreviation: "x"

endoreg_db/data/information_source/medication.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.InformationSource
+  fields:
+    name: "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
+    name_de: "Fachinformation Apixaban (Eliquis) 2.5mg, Bristol Meyer Squibbs"
+    name_en: "Apixaban (Eliquis) 2.5mg, Bristol Meyer Squibbs"
+    date: "2024-04-28"

endoreg_db/data/lab_value/cardiac_enzymes.yaml

@@ -0,0 +1,31 @@
+# Creatine kinase: Female: 30–135 U/L; male: 55–170 U/L 
+# Creatine kinase MB (CKMB): ˂5% of total 
+# Troponin: ≤0.04 ng/mL
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "creatine_kinase"
+    name_de: "Kreatinkinase"
+    name_en: "Creatine Kinase"
+    abbreviation: "CK"
+    default_unit: "units per liter"
+    normal_range_gender_dependent: true
+    default_normal_range: {
+      "female": {
+        "min": 30,
+        "max": 135
+      },
+      "male": {
+        "min": 55,
+        "max": 170
+      }
+    }
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "creatine_kinase_mb_fraction"
+    name_de: "Kreatinkinase MB"
+    name_en: "Creatine Kinase MB"
+    abbreviation: "CKMB%"
+    default_unit: "percent"
+    default_normal_range: {"max": 5}

endoreg_db/data/lab_value/coagulation.yaml

@@ -0,0 +1,49 @@
+# Prothrombin time: 11–13 seconds 
+- model: endoreg_db.lab_value
+  fields:
+    name: "prothrombin_time"
+    name_de: "Prothrombinzeit"
+    name_en: "Prothrombin time"
+    abbreviation: "PTT"
+    default_unit: "seconds"
+    default_normal_range: {"min": 11, "max": 13}
+
+# International normalized ratio (INR): 0.9-1.2
+- model: endoreg_db.lab_value
+  fields:
+    name: "international_normalized_ratio"
+    name_de: "International Normalisierte Ratio"
+    name_en: "International normalized ratio"
+    abbreviation: "INR"
+    default_unit: "ratio"
+    default_normal_range: {"min": 0.9, "max": 1.2}
+
+# Activated partial thromboplastin time (aPTT): 25–35 seconds 
+- model: endoreg_db.lab_value
+  fields:
+    name: "activated_partial_thromboplastin_time"
+    name_de: "Aktivierte partielle Thromboplastinzeit"
+    name_en: "Activated partial thromboplastin time"
+    abbreviation: "aPTT"
+    default_unit: "seconds"
+    default_normal_range: {"min": 25, "max": 35}
+
+# Fibrinogen: 150-350 mg/dL (1.5-3.5 g/L)
+- model: endoreg_db.lab_value
+  fields:
+    name: "fibrinogen"
+    name_de: "Fibrinogen"
+    name_en: "Fibrinogen"
+    abbreviation: "Fib"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"min": 150, "max": 350}
+
+# Bleeding time:  <8 minutes
+- model: endoreg_db.lab_value
+  fields:
+    name: "bleeding_time"
+    name_de: "Blutungszeit"
+    name_en: "Bleeding time"
+    abbreviation: "BT"
+    default_unit: "minutes"
+    default_normal_range: {"max": 8}