dslighting 1.7.1__py3-none-any.whl → 1.7.6__py3-none-any.whl

mlebench/competitions/text-normalization-challenge-russian-language/prepare.py

@@ -0,0 +1,113 @@
+import csv
+import zipfile
+from pathlib import Path
+
+from sklearn.model_selection import train_test_split
+
+from mlebench.utils import compress, extract, read_csv
+
+
+def prepare(raw: Path, public: Path, private: Path):
+
+    # Extract
+    extract(raw / "ru_test_2.csv.zip", raw)  # We only use the 2nd stage test set
+    extract(raw / "ru_train.csv.zip", raw)
+    extract(raw / "ru_sample_submission_2.csv.zip", raw)
+
+    # Create train and test splits from train set
+    old_train = read_csv(raw / "ru_train.csv")
+    # We split so that we don't share any sentence_ids between train and test
+    # This gives us len(new_train) = 9515325 and len(answers) = 1059191
+    unique_sentence_ids = old_train["sentence_id"].unique()
+    train_sentence_ids, test_sentence_ids = train_test_split(
+        unique_sentence_ids, test_size=0.1, random_state=0
+    )
+    new_train = old_train[old_train["sentence_id"].isin(train_sentence_ids)]
+    answers = old_train[old_train["sentence_id"].isin(test_sentence_ids)]
+    assert set(new_train["sentence_id"]).isdisjoint(
+        set(answers["sentence_id"])
+    ), f"sentence_id is not disjoint between train and test sets"
+
+    # "sentence_id" counts need to be reset for new_train and answers
+    new_train_id_mapping = {
+        old_id: new_id for new_id, old_id in enumerate(new_train["sentence_id"].unique())
+    }
+    new_train["sentence_id"] = new_train["sentence_id"].map(new_train_id_mapping)
+    answers_id_mapping = {
+        old_id: new_id for new_id, old_id in enumerate(answers["sentence_id"].unique())
+    }
+    answers["sentence_id"] = answers["sentence_id"].map(answers_id_mapping)
+
+    # Create new test set
+    new_test = answers.drop(["after", "class"], axis=1).copy()
+
+    # Reformat answers to match sample submission format
+    answers = answers[["sentence_id", "token_id", "after"]].copy()
+    answers["id"] = answers["sentence_id"].astype(str) + "_" + answers["token_id"].astype(str)
+    answers = answers[["id", "after"]]
+
+    # Create sample submission
+    sample_submission = new_test[["sentence_id", "token_id", "before"]].copy()
+    sample_submission["id"] = (
+        sample_submission["sentence_id"].astype(str)
+        + "_"
+        + sample_submission["token_id"].astype(str)
+    )
+    sample_submission["after"] = sample_submission["before"]
+    sample_submission = sample_submission[["id", "after"]]
+
+    # Checks
+    assert new_train.columns.tolist() == [
+        "sentence_id",
+        "token_id",
+        "class",
+        "before",
+        "after",
+    ], f"new_train.columns.tolist() == {new_train.columns.tolist()}"
+    assert new_test.columns.tolist() == [
+        "sentence_id",
+        "token_id",
+        "before",
+    ], f"new_test.columns.tolist() == {new_test.columns.tolist()}"
+    assert sample_submission.columns.tolist() == [
+        "id",
+        "after",
+    ], f"sample_submission.columns.tolist() == {sample_submission.columns.tolist()}"
+    assert answers.columns.tolist() == [
+        "id",
+        "after",
+    ], f"answers.columns.tolist() == {answers.columns.tolist()}"
+    assert len(new_test) + len(new_train) == len(
+        old_train
+    ), f"New train and test sets do not sum to old train set, got {len(new_test) + len(new_train)} and {len(old_train)}"
+
+    # Write CSVs
+    answers.to_csv(
+        private / "answers.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    sample_submission.to_csv(
+        private / "sample_submission.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    new_train.to_csv(
+        public / "ru_train.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    new_test.to_csv(
+        public / "ru_test_2.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    sample_submission.to_csv(
+        public / "ru_sample_submission_2.csv",
+        index=False,
+        quotechar='"',
+        quoting=csv.QUOTE_NONNUMERIC,
+    )
+
+    # Zip up
+    with zipfile.ZipFile(public / "ru_train.csv.zip", "w") as zipf:
+        zipf.write(public / "ru_train.csv", arcname="ru_train.csv")
+    with zipfile.ZipFile(public / "ru_test_2.csv.zip", "w") as zipf:
+        zipf.write(public / "ru_test_2.csv", arcname="ru_test_2.csv")
+    with zipfile.ZipFile(public / "ru_sample_submission_2.csv.zip", "w") as zipf:
+        zipf.write(public / "ru_sample_submission_2.csv", arcname="ru_sample_submission_2.csv")
+    (public / "ru_train.csv").unlink()
+    (public / "ru_test_2.csv").unlink()
+    (public / "ru_sample_submission_2.csv").unlink()

mlebench/competitions/text-normalization-challenge-russian-language/prepare_val.py

@@ -0,0 +1,165 @@
+import csv
+import zipfile
+from pathlib import Path
+
+from sklearn.model_selection import train_test_split
+
+from mlebench.utils import compress, extract, read_csv
+
+
+def _process_split(input_df, public_path, private_path, test_size, random_state):
+    """
+    Splits an input DataFrame into train and test sets, processes them,
+    and writes the final files to the specified public and private paths.
+
+    This function encapsulates the entire data preparation logic for one split,
+    ensuring it can be reused for creating both the main test set and a
+    subsequent validation set.
+
+    Args:
+        input_df: The DataFrame to be split.
+        public_path: The directory to save public artifacts (e.g., train data, test features).
+        private_path: The directory to save private artifacts (e.g., test labels).
+        test_size: The proportion of the dataset to allocate to the test split.
+        random_state: The seed used by the random number generator.
+
+    Returns:
+        The newly created training DataFrame, which can be used for a subsequent split.
+    """
+    # Create train and test splits from the provided dataframe
+    # We split so that we don't share any sentence_ids between train and test
+    unique_sentence_ids = input_df["sentence_id"].unique()
+    train_sentence_ids, test_sentence_ids = train_test_split(
+        unique_sentence_ids, test_size=test_size, random_state=random_state
+    )
+    new_train = input_df[input_df["sentence_id"].isin(train_sentence_ids)]
+    answers = input_df[input_df["sentence_id"].isin(test_sentence_ids)]
+    assert set(new_train["sentence_id"]).isdisjoint(
+        set(answers["sentence_id"])
+    ), f"sentence_id is not disjoint between train and test sets"
+
+    # "sentence_id" counts need to be reset for new_train and answers
+    new_train_id_mapping = {
+        old_id: new_id for new_id, old_id in enumerate(new_train["sentence_id"].unique())
+    }
+    new_train["sentence_id"] = new_train["sentence_id"].map(new_train_id_mapping)
+    answers_id_mapping = {
+        old_id: new_id for new_id, old_id in enumerate(answers["sentence_id"].unique())
+    }
+    answers["sentence_id"] = answers["sentence_id"].map(answers_id_mapping)
+
+    # Create new test set
+    new_test = answers.drop(["after", "class"], axis=1).copy()
+
+    # Reformat answers to match sample submission format
+    answers = answers[["sentence_id", "token_id", "after"]].copy()
+    answers["id"] = answers["sentence_id"].astype(str) + "_" + answers["token_id"].astype(str)
+    answers = answers[["id", "after"]]
+
+    # Create sample submission
+    sample_submission = new_test[["sentence_id", "token_id", "before"]].copy()
+    sample_submission["id"] = (
+        sample_submission["sentence_id"].astype(str)
+        + "_"
+        + sample_submission["token_id"].astype(str)
+    )
+    sample_submission["after"] = sample_submission["before"]
+    sample_submission = sample_submission[["id", "after"]]
+
+    # Checks
+    assert new_train.columns.tolist() == [
+        "sentence_id",
+        "token_id",
+        "class",
+        "before",
+        "after",
+    ], f"new_train.columns.tolist() == {new_train.columns.tolist()}"
+    assert new_test.columns.tolist() == [
+        "sentence_id",
+        "token_id",
+        "before",
+    ], f"new_test.columns.tolist() == {new_test.columns.tolist()}"
+    assert sample_submission.columns.tolist() == [
+        "id",
+        "after",
+    ], f"sample_submission.columns.tolist() == {sample_submission.columns.tolist()}"
+    assert answers.columns.tolist() == [
+        "id",
+        "after",
+    ], f"answers.columns.tolist() == {answers.columns.tolist()}"
+    assert len(new_test) + len(new_train) == len(
+        input_df
+    ), f"New train and test sets do not sum to old train set, got {len(new_test) + len(new_train)} and {len(input_df)}"
+
+    # Write CSVs
+    answers.to_csv(
+        private_path / "answers.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    sample_submission.to_csv(
+        private_path / "sample_submission.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    new_train.to_csv(
+        public_path / "ru_train.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    new_test.to_csv(
+        public_path / "ru_test_2.csv", index=False, quotechar='"', quoting=csv.QUOTE_NONNUMERIC
+    )
+    sample_submission.to_csv(
+        public_path / "ru_sample_submission_2.csv",
+        index=False,
+        quotechar='"',
+        quoting=csv.QUOTE_NONNUMERIC,
+    )
+
+    # Zip up
+    with zipfile.ZipFile(public_path / "ru_train.csv.zip", "w") as zipf:
+        zipf.write(public_path / "ru_train.csv", arcname="ru_train.csv")
+    with zipfile.ZipFile(public_path / "ru_test_2.csv.zip", "w") as zipf:
+        zipf.write(public_path / "ru_test_2.csv", arcname="ru_test_2.csv")
+    with zipfile.ZipFile(public_path / "ru_sample_submission_2.csv.zip", "w") as zipf:
+        zipf.write(public_path / "ru_sample_submission_2.csv", arcname="ru_sample_submission_2.csv")
+    (public_path / "ru_train.csv").unlink()
+    (public_path / "ru_test_2.csv").unlink()
+    (public_path / "ru_sample_submission_2.csv").unlink()
+
+    return new_train
+
+
+def prepare(raw: Path, public: Path, private: Path):
+    # Define paths for the new validation set split
+    public_val = public.parent / "public_val"
+    private_val = private.parent / "private_val"
+
+    # Create all output directories ahead of time
+    for p in [public, private, public_val, private_val]:
+        p.mkdir(parents=True, exist_ok=True)
+
+    # Extract
+    extract(raw / "ru_test_2.csv.zip", raw)  # We only use the 2nd stage test set
+    extract(raw / "ru_train.csv.zip", raw)
+    extract(raw / "ru_sample_submission_2.csv.zip", raw)
+
+    # Load initial raw data
+    initial_train_data = read_csv(raw / "ru_train.csv")
+
+    # --- First Split: Create Original Train and Test sets ---
+    # This call generates the final public/private outputs. These must not be changed.
+    # The returned DataFrame is the training set from this split.
+    main_train_set = _process_split(
+        input_df=initial_train_data,
+        public_path=public,
+        private_path=private,
+        test_size=0.1,
+        random_state=0,
+    )
+
+    # --- Second Split: Create New Train and Validation sets ---
+    # This call takes the training data from the first split and splits it again
+    # using the exact same logic. The outputs are written to the new _val directories.
+    _ = _process_split(
+        input_df=main_train_set,
+        public_path=public_val,
+        private_path=private_val,
+        test_size=0.1,  # Use same proportion
+        random_state=0, # Use same random seed for consistent splitting logic
+    )

mlebench/competitions/tgs-salt-identification-challenge/grade.py

@@ -0,0 +1,144 @@
+import numpy as np
+from numpy import ndarray
+from pandas import DataFrame
+
+from mlebench.competitions.utils import rle_decode
+from mlebench.grade_helpers import InvalidSubmissionError
+
+IMG_HEIGHT = 101
+IMG_WIDTH = 101
+
+
+def grade(submission: DataFrame, answers: DataFrame) -> float:
+    expected_columns = ["id", "rle_mask"]
+
+    assert set(answers.columns) == set(
+        expected_columns
+    ), f"Expected answers to have columns {expected_columns}, but got {answers.columns} instead!"
+
+    if set(submission.columns) != set(expected_columns):
+        raise InvalidSubmissionError(
+            f"Expected submission to have columns {expected_columns}, but got {submission.columns} instead!"
+        )
+
+    if len(submission) != len(answers):
+        raise InvalidSubmissionError(
+            f"Expected submission to have {len(answers)} rows, but got {len(submission)} instead!"
+        )
+
+    transformed_submission = submission.fillna("")
+    transformed_answers = answers.fillna("")
+
+    assert transformed_answers.applymap(
+        lambda x: isinstance(x, str)
+    ).values.all(), "Expected all items in `answers` to be strings, but found non-string items!"
+
+    if not transformed_submission.applymap(lambda x: isinstance(x, str)).values.all():
+        raise InvalidSubmissionError(
+            "Expected all items in `submission` to be strings, but found non-string items!"
+        )
+
+    sorted_submission = transformed_submission.sort_values(by="id")
+    sorted_answers = transformed_answers.sort_values(by="id")
+
+    if (sorted_submission["id"].values != sorted_answers["id"].values).any():
+        raise InvalidSubmissionError(
+            f"Expected submission to have the same IDs as answers, but got a different set of IDs!"
+        )
+
+    y_preds_rle = sorted_submission["rle_mask"].values
+    y_trues_rle = sorted_answers["rle_mask"].values
+
+    try:
+        y_preds = np.array(
+            [rle_decode(rle, height=IMG_HEIGHT, width=IMG_WIDTH) for rle in y_preds_rle]
+        )
+    except AssertionError as e:
+        raise InvalidSubmissionError(f"Error decoding RLE masks: {e}")
+
+    y_trues = np.array([rle_decode(rle, height=IMG_HEIGHT, width=IMG_WIDTH) for rle in y_trues_rle])
+
+    scores = [iou_metric(y_trues[i], y_preds[i]) for i in range(len(y_trues))]
+    score = np.mean(scores)
+
+    return score
+
+
+def iou_metric(y_true_in: ndarray, y_pred_in: ndarray) -> float:
+    """
+    Adapted from https://www.kaggle.com/code/phoenigs/u-net-dropout-augmentation-stratification.
+    """
+
+    if np.sum(y_true_in) == 0 and np.sum(y_pred_in) == 0:
+        return 1.0
+
+    if np.sum(y_true_in) == 0 and np.sum(y_pred_in) > 0:
+        return 0.0
+
+    labels = y_true_in
+    y_pred = y_pred_in
+
+    true_objects = 2
+    pred_objects = 2
+
+    intersection = np.histogram2d(
+        labels.flatten(),
+        y_pred.flatten(),
+        bins=(true_objects, pred_objects),
+    )[0]
+
+    # Compute areas (needed for finding the union between all objects)
+    area_true = np.histogram(labels, bins=true_objects)[0]
+    area_pred = np.histogram(y_pred, bins=pred_objects)[0]
+    area_true = np.expand_dims(area_true, -1)
+    area_pred = np.expand_dims(area_pred, 0)
+
+    # Compute union
+    union = area_true + area_pred - intersection
+
+    # Exclude background from the analysis
+    intersection = intersection[1:, 1:]
+    union = union[1:, 1:]
+    union[union == 0] = 1e-9
+
+    # Compute the intersection over union
+    iou = intersection / union
+
+    # Precision helper function
+    def precision_at(threshold, iou):
+        matches = iou > threshold
+        true_positives = np.sum(matches, axis=1) == 1  # Correct objects
+        false_positives = np.sum(matches, axis=0) == 0  # Missed objects
+        false_negatives = np.sum(matches, axis=1) == 0  # Extra objects
+        tp, fp, fn = np.sum(true_positives), np.sum(false_positives), np.sum(false_negatives)
+        return tp, fp, fn
+
+    # Loop over IoU thresholds
+    prec = []
+
+    for t in np.arange(0.5, 1.0, 0.05):
+        tp, fp, fn = precision_at(t, iou)
+
+        if (tp + fp + fn) > 0:
+            p = tp / (tp + fp + fn)
+        else:
+            p = 0
+
+        prec.append(p)
+
+    return np.mean(prec)
+
+
+def iou_metric_batch(y_true_in, y_pred_in):
+    """
+    Adapted from https://www.kaggle.com/code/phoenigs/u-net-dropout-augmentation-stratification.
+    """
+
+    batch_size = y_true_in.shape[0]
+    metric = []
+
+    for batch in range(batch_size):
+        value = iou_metric(y_true_in[batch], y_pred_in[batch])
+        metric.append(value)
+
+    return np.mean(metric)

mlebench/competitions/tgs-salt-identification-challenge/prepare.py

@@ -0,0 +1,158 @@
+import shutil
+from pathlib import Path
+
+from sklearn.model_selection import train_test_split
+
+from mlebench.utils import extract, read_csv
+
+
+def prepare(raw: Path, public: Path, private: Path) -> None:
+    extract(raw / "competition_data.zip", raw)
+
+    old_train = read_csv(raw / "competition_data" / "train.csv")
+    old_train = old_train.fillna("")
+
+    # Original ratio is Train set - 4,000 samples; Test set - ~18,000 samples (82% ratio)
+    # We use a 0.25 ratio to get number of test samples into thousand OOM
+    new_train, new_test = train_test_split(old_train, test_size=0.25, random_state=0)
+
+    assert len(new_train) + len(new_test) == len(
+        old_train
+    ), "Some samples were lost when creating the new train and test sets!"
+
+    new_train_ids = set(new_train["id"])
+    new_test_ids = set(new_test["id"])
+
+    assert new_train_ids.isdisjoint(
+        new_test_ids
+    ), "`id` is not disjoint between train and test sets"
+
+    new_train.sort_values(by="id").to_csv(public / "train.csv", index=False)
+    new_test.sort_values(by="id").to_csv(private / "test.csv", index=False)
+
+    old_train_imgs = set((raw / "competition_data" / "train" / "images").glob("*.png"))
+
+    assert len(old_train_imgs) == len(
+        old_train
+    ), "The number of images in the old train set doesn't match the number of training images!"
+
+    new_train_imgs = set(img for img in old_train_imgs if img.stem in new_train_ids)
+    new_test_imgs = set(img for img in old_train_imgs if img.stem in new_test_ids)
+
+    assert new_train_imgs.isdisjoint(
+        new_test_imgs
+    ), "Images are not disjoint between train and test sets"
+
+    assert len(new_train_imgs) + len(new_test_imgs) == len(
+        old_train_imgs
+    ), "Some images were lost when creating the new train and test sets!"
+
+    (public / "train" / "images").mkdir(parents=True, exist_ok=True)
+    (public / "train" / "masks").mkdir(parents=True, exist_ok=True)
+
+    for fpath in new_train_imgs:
+        shutil.copyfile(
+            src=fpath,
+            dst=public / "train" / "images" / fpath.name,
+        )
+
+        shutil.copyfile(
+            src=raw / "competition_data" / "train" / "masks" / fpath.name,
+            dst=public / "train" / "masks" / fpath.name,
+        )
+
+    (public / "test" / "images").mkdir(parents=True, exist_ok=True)
+
+    for fpath in new_test_imgs:
+        shutil.copyfile(
+            src=fpath,
+            dst=public / "test" / "images" / fpath.name,
+        )
+
+    sample_submission = new_test.drop(columns=["rle_mask"]).copy()
+    sample_submission["rle_mask"] = "1 1"
+    sample_submission.sort_values(by="id").to_csv(public / "sample_submission.csv", index=False)
+
+    old_depths = read_csv(raw / "depths.csv")
+    new_depths_mask = old_depths["id"].isin(new_train_ids)
+    new_depths = old_depths[new_depths_mask]
+    new_depths.sort_values(by="id").to_csv(public / "depths.csv", index=False)
+
+    # Sanity checks
+
+    assert (public / "train.csv").exists(), "`train.csv` doesn't exist!"
+    assert (public / "sample_submission.csv").exists(), "`sample_submission.csv` doesn't exist!"
+    assert (public / "depths.csv").exists(), "`depths.csv` doesn't exist!"
+    assert (public / "train").exists(), "`train` directory doesn't exist!"
+    assert (public / "test").exists(), "`test` directory doesn't exist!"
+    assert (private / "test.csv").exists(), "`test.csv` doesn't exist!"
+
+    actual_new_train_imgs = set(img.stem for img in (public / "train" / "images").glob("*.png"))
+    actual_new_train_masks = set(img.stem for img in (public / "train" / "masks").glob("*.png"))
+
+    assert len(actual_new_train_imgs) == len(
+        new_train
+    ), "The number of images in the train set doesn't match the number of training images!"
+
+    assert len(actual_new_train_masks) == len(
+        new_train
+    ), "The number of masks in the train set doesn't match the number of training masks!"
+
+    for new_train_id in new_train["id"]:
+        assert (
+            public / "train" / "images" / f"{new_train_id}.png"
+        ).exists(), f"Expected `{new_train_id}.png` to exist in train images, but it doesn't!"
+
+        assert (
+            public / "train" / "masks" / f"{new_train_id}.png"
+        ).exists(), f"Expected `{new_train_id}.png` to exist in train masks, but it doesn't!"
+
+    actual_new_test_imgs = set(img.stem for img in (public / "test" / "images").glob("*.png"))
+
+    assert not (
+        public / "test" / "masks"
+    ).exists(), f"Expected `public / test / masks` to not exist, but it does!"
+
+    assert len(actual_new_test_imgs) == len(
+        new_test
+    ), "The number of images in the test set doesn't match the number of test images!"
+
+    for new_test_id in new_test["id"]:
+        assert (
+            public / "test" / "images" / f"{new_test_id}.png"
+        ).exists(), f"Expected `{new_test_id}.png` to exist in test images, but it doesn't!"
+
+        assert not (
+            public / "test" / "masks" / f"{new_test_id}.png"
+        ).exists(), f"Expected `{new_test_id}.png` to exist in test masks, but it doesn't!"
+
+    assert actual_new_train_imgs.isdisjoint(
+        actual_new_test_imgs
+    ), "Expected no overlap in images between the new train and test sets, but there is!"
+
+    actual_sample_submission = read_csv(public / "sample_submission.csv")
+    actual_new_test = read_csv(private / "test.csv")
+
+    assert len(actual_sample_submission) == len(
+        actual_new_test
+    ), "The number of samples in the sample submission doesn't match the number of samples in the test set!"
+
+    assert set(actual_sample_submission["id"]) == set(
+        actual_new_test["id"]
+    ), "The ids in the sample submission don't match the ids in the test set!"
+
+    assert len(actual_new_test_imgs) == len(
+        actual_new_test
+    ), "The number of images in the test set doesn't match the number of test images!"
+
+    assert (
+        set(actual_new_test["id"]) == actual_new_test_imgs
+    ), "The ids in the test set don't match the test images!"
+
+    assert new_train.applymap(
+        lambda x: isinstance(x, str)
+    ).values.all(), "Not all elements in the DataFrame are strings!"
+
+    assert new_test.applymap(
+        lambda x: isinstance(x, str)
+    ).values.all(), "Not all elements in the DataFrame are strings!"