driftlessmap 1.1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- driftlessmap/__init__.py +16 -0
- driftlessmap/__main__.py +5 -0
- driftlessmap/about.py +24 -0
- driftlessmap/allen_downloader.py +908 -0
- driftlessmap/app.py +8085 -0
- driftlessmap/atlas_downloader.py +370 -0
- driftlessmap/atlas_loader.py +526 -0
- driftlessmap/atlas_processor.py +784 -0
- driftlessmap/atlas_transform.py +111 -0
- driftlessmap/atlas_view.py +1435 -0
- driftlessmap/cell_detection.py +27 -0
- driftlessmap/coordinate_validation.py +19 -0
- driftlessmap/czi_reader.py +236 -0
- driftlessmap/data/WHS_atlas_labels.pkl +0 -0
- driftlessmap/data/allen_mice_atlas_labels.pkl +0 -0
- driftlessmap/data/atlas_labels.pkl +0 -0
- driftlessmap/data/query.csv +1328 -0
- driftlessmap/download_utils.py +85 -0
- driftlessmap/herbs.png +0 -0
- driftlessmap/icons/backward.svg +15 -0
- driftlessmap/icons/dot.svg +11 -0
- driftlessmap/icons/down-arrow.svg +10 -0
- driftlessmap/icons/fast_backward.svg +14 -0
- driftlessmap/icons/fast_forward.svg +14 -0
- driftlessmap/icons/forward.svg +14 -0
- driftlessmap/icons/layers/add.png +0 -0
- driftlessmap/icons/layers/ai.png +0 -0
- driftlessmap/icons/layers/eye_off.png +0 -0
- driftlessmap/icons/layers/eye_on.png +0 -0
- driftlessmap/icons/layers/eye_white.png +0 -0
- driftlessmap/icons/layers/hi.png +0 -0
- driftlessmap/icons/layers/trash.png +0 -0
- driftlessmap/icons/object.svg +22 -0
- driftlessmap/icons/sidebar/add.png +0 -0
- driftlessmap/icons/sidebar/atlascontrol.png +0 -0
- driftlessmap/icons/sidebar/atlascontrol.svg +32 -0
- driftlessmap/icons/sidebar/bnd.svg +14 -0
- driftlessmap/icons/sidebar/c_section.png +0 -0
- driftlessmap/icons/sidebar/c_section2.png +0 -0
- driftlessmap/icons/sidebar/cell.svg +24 -0
- driftlessmap/icons/sidebar/check.svg +9 -0
- driftlessmap/icons/sidebar/compare.svg +18 -0
- driftlessmap/icons/sidebar/contour.svg +14 -0
- driftlessmap/icons/sidebar/h_section.png +0 -0
- driftlessmap/icons/sidebar/info.svg +14 -0
- driftlessmap/icons/sidebar/layers.png +0 -0
- driftlessmap/icons/sidebar/layers.svg +23 -0
- driftlessmap/icons/sidebar/line.svg +10 -0
- driftlessmap/icons/sidebar/link.svg +18 -0
- driftlessmap/icons/sidebar/link_off.svg +18 -0
- driftlessmap/icons/sidebar/merge.svg +11 -0
- driftlessmap/icons/sidebar/object.svg +13 -0
- driftlessmap/icons/sidebar/probe.png +0 -0
- driftlessmap/icons/sidebar/probe.svg +23 -0
- driftlessmap/icons/sidebar/rotation_horizontal.svg +14 -0
- driftlessmap/icons/sidebar/rotation_vertical.svg +14 -0
- driftlessmap/icons/sidebar/s_section.png +0 -0
- driftlessmap/icons/sidebar/tool.png +0 -0
- driftlessmap/icons/sidebar/tool.svg +19 -0
- driftlessmap/icons/sidebar/trash.png +0 -0
- driftlessmap/icons/sidebar/tree_checked.svg +10 -0
- driftlessmap/icons/sidebar/treeview.png +0 -0
- driftlessmap/icons/sidebar/treeview.svg +10 -0
- driftlessmap/icons/sidebar/treeview2.png +0 -0
- driftlessmap/icons/sidebar/virus.svg +24 -0
- driftlessmap/icons/tdown.svg +16 -0
- driftlessmap/icons/toolbar/accept.svg +18 -0
- driftlessmap/icons/toolbar/accept2.svg +24 -0
- driftlessmap/icons/toolbar/aim.svg +44 -0
- driftlessmap/icons/toolbar/aim_not.svg +28 -0
- driftlessmap/icons/toolbar/anchor.svg +14 -0
- driftlessmap/icons/toolbar/anticlockwise_rotation.svg +12 -0
- driftlessmap/icons/toolbar/atlas_icon.png +0 -0
- driftlessmap/icons/toolbar/boundary_register.svg +18 -0
- driftlessmap/icons/toolbar/cancel.svg +32 -0
- driftlessmap/icons/toolbar/cell_select.svg +22 -0
- driftlessmap/icons/toolbar/cell_select_not.svg +12 -0
- driftlessmap/icons/toolbar/check.svg +9 -0
- driftlessmap/icons/toolbar/clockwise_rotation.svg +11 -0
- driftlessmap/icons/toolbar/closed_path.svg +16 -0
- driftlessmap/icons/toolbar/closed_path2 copy.svg +19 -0
- driftlessmap/icons/toolbar/closed_path2.svg +20 -0
- driftlessmap/icons/toolbar/eraser.png +0 -0
- driftlessmap/icons/toolbar/eraser.svg +19 -0
- driftlessmap/icons/toolbar/eye.svg +17 -0
- driftlessmap/icons/toolbar/eye_closed.svg +19 -0
- driftlessmap/icons/toolbar/fill.svg +12 -0
- driftlessmap/icons/toolbar/gps.svg +15 -0
- driftlessmap/icons/toolbar/h_flip.png +0 -0
- driftlessmap/icons/toolbar/handle.png +0 -0
- driftlessmap/icons/toolbar/image_icon.png +0 -0
- driftlessmap/icons/toolbar/image_icon.svg +25 -0
- driftlessmap/icons/toolbar/info.svg +14 -0
- driftlessmap/icons/toolbar/inpart.png +0 -0
- driftlessmap/icons/toolbar/inpart.svg +17 -0
- driftlessmap/icons/toolbar/lasso.png +0 -0
- driftlessmap/icons/toolbar/lasso.svg +14 -0
- driftlessmap/icons/toolbar/left90.png +0 -0
- driftlessmap/icons/toolbar/line.svg +10 -0
- driftlessmap/icons/toolbar/line_sites.svg +11 -0
- driftlessmap/icons/toolbar/linear_silicon.png +0 -0
- driftlessmap/icons/toolbar/linear_silicon.svg +88 -0
- driftlessmap/icons/toolbar/list.svg +14 -0
- driftlessmap/icons/toolbar/location.svg +14 -0
- driftlessmap/icons/toolbar/magic-wand.svg +16 -0
- driftlessmap/icons/toolbar/magic_white.png +0 -0
- driftlessmap/icons/toolbar/mask.svg +10 -0
- driftlessmap/icons/toolbar/match.svg +20 -0
- driftlessmap/icons/toolbar/matchbnd.svg +18 -0
- driftlessmap/icons/toolbar/matching.svg +36 -0
- driftlessmap/icons/toolbar/merge.svg +11 -0
- driftlessmap/icons/toolbar/move_down.png +0 -0
- driftlessmap/icons/toolbar/move_left.png +0 -0
- driftlessmap/icons/toolbar/move_right.png +0 -0
- driftlessmap/icons/toolbar/move_up.png +0 -0
- driftlessmap/icons/toolbar/moving.png +0 -0
- driftlessmap/icons/toolbar/multi-probe.svg +119 -0
- driftlessmap/icons/toolbar/multi_pencil.svg +23 -0
- driftlessmap/icons/toolbar/multi_probe.png +0 -0
- driftlessmap/icons/toolbar/object.svg +13 -0
- driftlessmap/icons/toolbar/open_path.svg +22 -0
- driftlessmap/icons/toolbar/outpart.png +0 -0
- driftlessmap/icons/toolbar/outpart.svg +26 -0
- driftlessmap/icons/toolbar/pencil.png +0 -0
- driftlessmap/icons/toolbar/pencil.svg +19 -0
- driftlessmap/icons/toolbar/plasso.png +0 -0
- driftlessmap/icons/toolbar/probe.svg +19 -0
- driftlessmap/icons/toolbar/radar.svg +32 -0
- driftlessmap/icons/toolbar/rotation.svg +45 -0
- driftlessmap/icons/toolbar/rotation_clockwise.svg +18 -0
- driftlessmap/icons/toolbar/rotation_counter_clockwise.svg +18 -0
- driftlessmap/icons/toolbar/ruler.svg +27 -0
- driftlessmap/icons/toolbar/separate_sites.svg +13 -0
- driftlessmap/icons/toolbar/single_pencil.svg +16 -0
- driftlessmap/icons/toolbar/toa.svg +11 -0
- driftlessmap/icons/toolbar/toa_delete.svg +36 -0
- driftlessmap/icons/toolbar/toaa.svg +11 -0
- driftlessmap/icons/toolbar/toh.svg +11 -0
- driftlessmap/icons/toolbar/toh_delete.svg +36 -0
- driftlessmap/icons/toolbar/tohh.svg +11 -0
- driftlessmap/icons/toolbar/trans.png +0 -0
- driftlessmap/icons/toolbar/trans.svg +16 -0
- driftlessmap/icons/toolbar/triangulation.svg +10 -0
- driftlessmap/icons/toolbar/two_window.png +0 -0
- driftlessmap/icons/toolbar/unmerge.svg +16 -0
- driftlessmap/icons/toolbar/v_flip.png +0 -0
- driftlessmap/icons/toolbar/virus.svg +24 -0
- driftlessmap/icons/toolbar/virus_register.svg +31 -0
- driftlessmap/icons/toolbar/vis2d.svg +29 -0
- driftlessmap/icons/toolbar/window2.png +0 -0
- driftlessmap/icons/toolbar/window3.png +0 -0
- driftlessmap/icons/toolbar/window4.png +0 -0
- driftlessmap/icons/tree_close.svg +14 -0
- driftlessmap/icons/tree_open.svg +14 -0
- driftlessmap/icons/up-arrow.svg +10 -0
- driftlessmap/image_curves.py +579 -0
- driftlessmap/image_reader.py +186 -0
- driftlessmap/image_stacks.py +359 -0
- driftlessmap/image_view.py +646 -0
- driftlessmap/images_reader.py +5 -0
- driftlessmap/label_tree.py +278 -0
- driftlessmap/layer_validation.py +25 -0
- driftlessmap/layers_control.py +554 -0
- driftlessmap/main_window.ui +883 -0
- driftlessmap/movable_points.py +254 -0
- driftlessmap/obj_items.py +122 -0
- driftlessmap/object_control.py +1762 -0
- driftlessmap/persistence.py +376 -0
- driftlessmap/popup_message.py +16 -0
- driftlessmap/probe_csv.py +319 -0
- driftlessmap/probe_reconstruction.py +409 -0
- driftlessmap/probe_utiles.py +1442 -0
- driftlessmap/qss/atlas_view_group_box.qss +15 -0
- driftlessmap/qss/box_label.qss +7 -0
- driftlessmap/qss/channel_selector.qss +19 -0
- driftlessmap/qss/color_combo.qss +121 -0
- driftlessmap/qss/decor_label.qss +9 -0
- driftlessmap/qss/dialogs.qss +11 -0
- driftlessmap/qss/hidden_line_edit.qss +5 -0
- driftlessmap/qss/label_tree.qss +123 -0
- driftlessmap/qss/main_window.qss +243 -0
- driftlessmap/qss/menu_bar.qss +42 -0
- driftlessmap/qss/multi_handle_slider.qss +14 -0
- driftlessmap/qss/obj_ctrl_bottom_button.qss +29 -0
- driftlessmap/qss/object_text_button.qss +19 -0
- driftlessmap/qss/page_control.qss +36 -0
- driftlessmap/qss/rotation_button.qss +9 -0
- driftlessmap/qss/side_bar.qss +23 -0
- driftlessmap/qss/spinbox.qss +106 -0
- driftlessmap/qss/tabs.qss +211 -0
- driftlessmap/qss/tool_bar.qss +77 -0
- driftlessmap/resources.py +34 -0
- driftlessmap/roi_analysis.py +375 -0
- driftlessmap/run_driftlessmap.py +4 -0
- driftlessmap/slice_stacks.py +268 -0
- driftlessmap/slice_validation.py +20 -0
- driftlessmap/toolbox.py +569 -0
- driftlessmap/triangulation.py +517 -0
- driftlessmap/triangulation_points.py +108 -0
- driftlessmap/user_settings.py +92 -0
- driftlessmap/uuuuuu.py +1168 -0
- driftlessmap/version.py +3 -0
- driftlessmap/widgets_utils.py +140 -0
- driftlessmap/wtiles.py +715 -0
- driftlessmap-1.1.0.dist-info/METADATA +186 -0
- driftlessmap-1.1.0.dist-info/RECORD +210 -0
- driftlessmap-1.1.0.dist-info/WHEEL +5 -0
- driftlessmap-1.1.0.dist-info/entry_points.txt +2 -0
- driftlessmap-1.1.0.dist-info/licenses/LICENSE.txt +23 -0
- driftlessmap-1.1.0.dist-info/top_level.txt +1 -0
driftlessmap/version.py
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import os
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import sys
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import numpy as np
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from PyQt6.QtWidgets import *
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from PyQt6.QtGui import *
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from PyQt6.QtCore import *
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from .uuuuuu import hsv2rgb, gamma_line, get_qhsv_from_czi_hsv, make_hist_data, read_qss_file
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class BWSpin(QWidget):
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def __init__(self, parent=None):
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QWidget.__init__(self)
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# wrap_frame = QFrame()
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wrap_layout = QVBoxLayout(self)
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wrap_layout.setContentsMargins(0, 0, 0, 0)
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wrap_layout.setSpacing(0)
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self.spin_nam = QLabel()
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self.spin_nam.setAlignment(Qt.AlignmentFlag.AlignCenter)
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self.spin_val = QSpinBox()
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wrap_layout.addWidget(self.spin_nam)
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wrap_layout.addWidget(self.spin_val)
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class GammaSpin(QWidget):
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def __init__(self, parent=None):
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QWidget.__init__(self)
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# wrap_frame = QFrame()
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wrap_layout = QVBoxLayout(self)
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wrap_layout.setContentsMargins(0, 0, 0, 0)
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wrap_layout.setSpacing(0)
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self.spin_nam = QLabel()
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self.spin_nam.setAlignment(Qt.AlignmentFlag.AlignCenter)
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self.spin_val = QDoubleSpinBox()
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self.spin_val.setDecimals(2)
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wrap_layout.addWidget(self.spin_nam)
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wrap_layout.addWidget(self.spin_val)
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class ColorCombo(QComboBox):
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def __init__(self, parent=None):
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QComboBox.__init__(self)
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color_combo_style = read_qss_file('qss/color_combo.qss')
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self.setStyleSheet(color_combo_style)
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self.px = QPixmap(80, 30)
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n_vals = ['Light Blue', 'Blue', 'Green', 'Lime Green', 'Yellow', 'Olive', 'Red', 'Dark Red', 'Violet', 'Purple',
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'Orange', 'Dark Orange', 'Turquoise', 'Blue Green']
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h_vals = [199, 235, 103, 115, 60, 60, 5, 4, 295, 279, 21, 20, 181, 151]
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s_vals = [60, 100, 70, 57, 67, 55, 85, 88, 77, 84, 81, 82, 51, 46]
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v_vals = [98, 96, 98, 59, 100, 60, 90, 54, 97, 77, 92, 73, 99, 79]
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s_vals = np.ravel(s_vals) * 0.01 * 255
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s_vals = s_vals.astype('uint8')
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v_vals = np.ravel(v_vals) * 0.01 * 255
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v_vals = v_vals.astype('uint8')
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self.hsv_color_list = []
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for i in range(len(h_vals)):
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self.hsv_color_list.append((h_vals[i] / 360., s_vals[i] / 255., v_vals[i] / 255.))
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self.px.fill(QColor.fromHsv(h_vals[i], s_vals[i], v_vals[i]))
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self.addItem(QIcon(self.px), n_vals[i])
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combo_list = QListView(self)
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self.setView(combo_list)
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class ChannelSelector(QWidget):
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class SignalProxy(QObject):
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visChannels = pyqtSignal(object, object)
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changeColors = pyqtSignal(object, object)
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def __init__(self, rgb=False, parent=None):
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self._sigprox = ChannelSelector.SignalProxy()
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self.sig_vis_channels = self._sigprox.visChannels
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self.sig_change_color = self._sigprox.changeColors
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QWidget.__init__(self)
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channel_button_style = read_qss_file('qss/channel_selector.qss')
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self.vis = True
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self.setFixedSize(60, 60)
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self.setStyleSheet(channel_button_style)
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# wrap_frame = QFrame()
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wrap_layout = QVBoxLayout(self)
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wrap_layout.setContentsMargins(0, 0, 0, 0)
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wrap_layout.setSpacing(0)
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self.vis_btn = QPushButton()
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self.vis_btn.setFixedSize(60, 30)
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self.vis_btn.setCheckable(True)
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self.vis_btn.clicked.connect(self.change_vis)
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self.color_combo = ColorCombo()
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self.color_combo.setFixedSize(60, 28)
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self.color_combo.currentIndexChanged.connect(self.selection_change)
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self.color_label = QLabel()
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self.color_label.setVisible(False)
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wrap_layout.addWidget(self.vis_btn)
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wrap_layout.addWidget(self.color_combo)
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wrap_layout.addWidget(self.color_label)
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def set_channel_index(self, index):
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self.index = index
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def change_vis(self):
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if self.vis_btn.isChecked():
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self.set_checked(True)
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else:
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self.set_checked(False)
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self.sig_vis_channels.emit(self.vis, self.index)
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def set_checked(self, is_checked):
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if is_checked:
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self.color_label.setVisible(True)
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self.color_combo.setVisible(False)
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self.vis = False
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else:
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self.color_label.setVisible(False)
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self.color_combo.setVisible(True)
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self.vis = True
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def selection_change(self):
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da_index = self.color_combo.currentIndex()
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da_color = self.color_combo.hsv_color_list[da_index]
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self.sig_change_color.emit(da_color, self.index)
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def add_item(self, hsv_color):
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self.color_combo.hsv_color_list.append((hsv_color[0], hsv_color[1], hsv_color[2]))
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q_hsv = get_qhsv_from_czi_hsv(hsv_color)
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self.color_combo.px.fill(QColor.fromHsv(q_hsv[0], q_hsv[1], q_hsv[2]))
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self.color_combo.addItem(QIcon(self.color_combo.px), '')
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self.color_combo.setCurrentIndex(len(self.color_combo.hsv_color_list) - 1)
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def delete_item(self):
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self.color_combo.removeItem(len(self.color_combo.hsv_color_list) - 1)
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self.color_combo.hsv_color_list.pop()
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