drbx 2.0.0.dev0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- drbx/__init__.py +20 -0
- drbx/__main__.py +5 -0
- drbx/cli.py +586 -0
- drbx/config/__init__.py +20 -0
- drbx/config/boutinp.py +556 -0
- drbx/config/model.py +34 -0
- drbx/config/normalization.py +66 -0
- drbx/data/atomic_rates/__init__.py +1 -0
- drbx/data/atomic_rates/iz_AMJUEL_H.x_2.1.5.json +213 -0
- drbx/data/atomic_rates/iz_AMJUEL_H.x_2.3.9a.json +213 -0
- drbx/data/atomic_rates/rec_AMJUEL_H.x_2.1.8.json +213 -0
- drbx/data/atomic_rates/rec_AMJUEL_H.x_2.3.13a.json +213 -0
- drbx/geometry/__init__.py +207 -0
- drbx/geometry/embedding.py +56 -0
- drbx/geometry/essos_import.py +1385 -0
- drbx/geometry/fci_geometry.py +4622 -0
- drbx/geometry/fci_maps.py +85 -0
- drbx/geometry/island_divertor.py +291 -0
- drbx/geometry/metric_tensor.py +99 -0
- drbx/geometry/open_slab.py +150 -0
- drbx/geometry/rotating_ellipse.py +253 -0
- drbx/geometry/shifted_torus.py +225 -0
- drbx/geometry/stellarator.py +287 -0
- drbx/geometry/vmec_extender_import.py +499 -0
- drbx/geometry/vmec_jax_import.py +306 -0
- drbx/linear/__init__.py +37 -0
- drbx/linear/dispersion.py +138 -0
- drbx/linear/eigen.py +91 -0
- drbx/native/__init__.py +224 -0
- drbx/native/array_backend.py +64 -0
- drbx/native/deck_runner.py +779 -0
- drbx/native/electromagnetic.py +250 -0
- drbx/native/expression.py +173 -0
- drbx/native/fci.py +295 -0
- drbx/native/fci_2_field_rhs.py +182 -0
- drbx/native/fci_4_field_rhs.py +1267 -0
- drbx/native/fci_boundaries.py +2494 -0
- drbx/native/fci_differentiable_case.py +304 -0
- drbx/native/fci_drb_EB_rhs.py +1243 -0
- drbx/native/fci_drb_rhs.py +190 -0
- drbx/native/fci_halo.py +1575 -0
- drbx/native/fci_helpers.py +350 -0
- drbx/native/fci_model.py +294 -0
- drbx/native/fci_neutral.py +139 -0
- drbx/native/fci_operators.py +4081 -0
- drbx/native/fci_sharding.py +597 -0
- drbx/native/fci_sheath_recycling.py +206 -0
- drbx/native/fci_time_integrator.py +96 -0
- drbx/native/fci_vorticity.py +198 -0
- drbx/native/fluid_1d.py +330 -0
- drbx/native/hasegawa_wakatani.py +196 -0
- drbx/native/limiters.py +57 -0
- drbx/native/mesh.py +238 -0
- drbx/native/metrics.py +234 -0
- drbx/native/neutrals/__init__.py +58 -0
- drbx/native/neutrals/atomic_rates.py +134 -0
- drbx/native/neutrals/detachment_sol_model.py +221 -0
- drbx/native/neutrals/reactions.py +164 -0
- drbx/native/neutrals/recycling_sol_model.py +197 -0
- drbx/native/sol_flux_tube.py +133 -0
- drbx/native/stellarator_turbulence.py +343 -0
- drbx/native/transport.py +134 -0
- drbx/native/units.py +32 -0
- drbx/native/vorticity.py +252 -0
- drbx/runtime/__init__.py +53 -0
- drbx/runtime/artifacts.py +161 -0
- drbx/runtime/memory.py +144 -0
- drbx/runtime/output.py +374 -0
- drbx/runtime/paths.py +9 -0
- drbx/runtime/performance.py +161 -0
- drbx/runtime/run_config.py +184 -0
- drbx/runtime/scheduler.py +99 -0
- drbx/runtime/state.py +40 -0
- drbx/validation/__init__.py +424 -0
- drbx/validation/autodiff_diffusion.py +329 -0
- drbx/validation/autodiff_diffusion_uncertainty.py +235 -0
- drbx/validation/diverted_tokamak_movie.py +558 -0
- drbx/validation/essos_fieldline_import_campaign.py +181 -0
- drbx/validation/essos_imported_artifact_audit.py +535 -0
- drbx/validation/essos_imported_drb_movie_campaign.py +2826 -0
- drbx/validation/essos_imported_fci_campaign.py +5241 -0
- drbx/validation/essos_imported_pytree_campaign.py +406 -0
- drbx/validation/essos_vmec_closed_field_campaign.py +314 -0
- drbx/validation/essos_vmec_closed_field_transient_campaign.py +629 -0
- drbx/validation/essos_vmec_fieldline_surface_campaign.py +620 -0
- drbx/validation/fluid_1d_mms_convergence.py +250 -0
- drbx/validation/geometry_lineouts.py +136 -0
- drbx/validation/geometry_slices.py +178 -0
- drbx/validation/publication_plotting.py +91 -0
- drbx/validation/stellarator_drb_pytree_campaign.py +621 -0
- drbx/validation/stellarator_fci_geometry_campaign.py +200 -0
- drbx/validation/stellarator_fci_operator_campaign.py +304 -0
- drbx/validation/stellarator_fci_suite_campaign.py +264 -0
- drbx/validation/stellarator_metric_mms_campaign.py +289 -0
- drbx/validation/stellarator_neutral_physics_campaign.py +255 -0
- drbx/validation/stellarator_sheath_recycling_campaign.py +331 -0
- drbx/validation/stellarator_sol_showcase.py +628 -0
- drbx/validation/stellarator_vorticity_campaign.py +304 -0
- drbx/validation/vmec_extender_edge_field_campaign.py +260 -0
- drbx/validation/vmec_extender_sol_smoke_campaign.py +365 -0
- drbx-2.0.0.dev0.dist-info/METADATA +380 -0
- drbx-2.0.0.dev0.dist-info/RECORD +106 -0
- drbx-2.0.0.dev0.dist-info/WHEEL +5 -0
- drbx-2.0.0.dev0.dist-info/entry_points.txt +2 -0
- drbx-2.0.0.dev0.dist-info/licenses/LICENSE +21 -0
- drbx-2.0.0.dev0.dist-info/top_level.txt +1 -0
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from __future__ import annotations
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import json
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from dataclasses import dataclass
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from pathlib import Path
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from matplotlib import pyplot as plt
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import numpy as np
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from ..geometry import SyntheticStellaratorGeometry, build_metric_report, build_synthetic_stellarator_geometry
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@dataclass(frozen=True)
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class StellaratorFciGeometryCampaignArtifacts:
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report_json_path: Path
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arrays_npz_path: Path
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plot_png_path: Path
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def create_stellarator_fci_geometry_campaign_package(
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*,
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output_root: str | Path,
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case_label: str = "stellarator_fci_geometry_campaign",
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nx: int = 36,
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ny: int = 32,
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nz: int = 64,
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) -> StellaratorFciGeometryCampaignArtifacts:
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root = Path(output_root)
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data_dir = root / "data"
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images_dir = root / "images"
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data_dir.mkdir(parents=True, exist_ok=True)
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images_dir.mkdir(parents=True, exist_ok=True)
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geometry = build_synthetic_stellarator_geometry(nx=nx, ny=ny, nz=nz)
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report = build_stellarator_fci_geometry_report(geometry)
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report_json_path = data_dir / f"{case_label}.json"
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report_json_path.write_text(json.dumps(report, indent=2, sort_keys=True), encoding="utf-8")
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arrays_npz_path = data_dir / f"{case_label}.npz"
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_write_geometry_arrays(geometry, arrays_npz_path)
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plot_png_path = images_dir / f"{case_label}.png"
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save_stellarator_fci_geometry_plot(geometry, report, plot_png_path)
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return StellaratorFciGeometryCampaignArtifacts(
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report_json_path=report_json_path,
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arrays_npz_path=arrays_npz_path,
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plot_png_path=plot_png_path,
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)
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def build_stellarator_fci_geometry_report(geometry: SyntheticStellaratorGeometry) -> dict[str, object]:
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metric_report = build_metric_report(geometry.metric)
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maps = geometry.maps
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forward_dx = np.asarray(maps.forward_x) - np.arange(maps.shape[0], dtype=np.float64)[:, None, None]
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forward_z0 = np.arange(maps.shape[2], dtype=np.float64)[None, None, :]
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forward_dz = np.mod(
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np.asarray(maps.forward_z) - forward_z0 + maps.shape[2] / 2.0,
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maps.shape[2],
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) - maps.shape[2] / 2.0
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connection = np.asarray(geometry.connection_length, dtype=np.float64)
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curvature = np.asarray(geometry.curvature, dtype=np.float64)
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bmag = np.asarray(geometry.metric.Bxy, dtype=np.float64)
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iota = np.asarray(geometry.iota, dtype=np.float64)
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report = {
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"case": "non_axisymmetric_fci_geometry",
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"geometry": geometry.metadata,
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"metric": metric_report,
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"map_diagnostics": {
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"forward_boundary_fraction": float(np.mean(np.asarray(maps.forward_boundary))),
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"backward_boundary_fraction": float(np.mean(np.asarray(maps.backward_boundary))),
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"radial_shift_linf_cells": float(np.max(np.abs(forward_dx))),
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"poloidal_shift_mean_cells": float(np.mean(forward_dz)),
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"poloidal_shift_std_cells": float(np.std(forward_dz)),
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},
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"connection_length": {
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"minimum": float(np.min(connection)),
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"maximum": float(np.max(connection)),
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"mean": float(np.mean(connection)),
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"std": float(np.std(connection)),
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"outer_midplane_mean": float(np.mean(connection[-4:, :, :])),
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},
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"curvature": {
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"minimum": float(np.min(curvature)),
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"maximum": float(np.max(curvature)),
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"mean": float(np.mean(curvature)),
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"std": float(np.std(curvature)),
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},
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"magnetic_field": {
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"minimum": float(np.min(bmag)),
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"maximum": float(np.max(bmag)),
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"mirror_ratio": float((np.max(bmag) - np.min(bmag)) / np.mean(bmag)),
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},
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"rotational_transform": {
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"axis_proxy": float(np.mean(iota[0, :, :])),
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"edge_proxy": float(np.mean(iota[-1, :, :])),
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},
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}
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report["passed"] = (
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bool(metric_report["passed"])
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and report["magnetic_field"]["minimum"] > 0.0
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and report["connection_length"]["minimum"] > 0.0
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and report["map_diagnostics"]["radial_shift_linf_cells"] > 0.0
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)
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return report
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def save_stellarator_fci_geometry_plot(
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geometry: SyntheticStellaratorGeometry,
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report: dict[str, object],
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path: str | Path,
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) -> Path:
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resolved = Path(path)
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resolved.parent.mkdir(parents=True, exist_ok=True)
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x = np.asarray(geometry.coordinates_x)
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y = np.asarray(geometry.coordinates_y)
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z = np.asarray(geometry.coordinates_z)
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r_major = np.sqrt(x * x + y * y)
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bmag = np.asarray(geometry.metric.Bxy)
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connection = np.asarray(geometry.connection_length)
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curvature = np.asarray(geometry.curvature)
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maps = geometry.maps
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radial_shift = np.asarray(maps.forward_x) - np.arange(maps.shape[0], dtype=np.float64)[:, None, None]
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theta = np.asarray(geometry.poloidal_angle[:, 0, :])
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radial = np.asarray(geometry.radial[:, 0, :])
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fig, axes = plt.subplots(2, 2, figsize=(11.0, 8.2), constrained_layout=True)
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toroidal_indices = [0, max(1, maps.shape[1] // 8), max(2, maps.shape[1] // 4), max(3, 3 * maps.shape[1] // 8)]
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colors = ["#005f73", "#0a9396", "#ee9b00", "#9b2226"]
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for index, color in zip(toroidal_indices, colors, strict=False):
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for surface in (maps.shape[0] // 4, maps.shape[0] // 2, maps.shape[0] - 2):
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axes[0, 0].plot(
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r_major[surface, index, :],
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z[surface, index, :],
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color=color,
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linewidth=1.3,
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alpha=0.75,
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)
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axes[0, 0].set_title("Rotating cross-sections and sampled flux surfaces")
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axes[0, 0].set_xlabel("major radius")
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axes[0, 0].set_ylabel("vertical coordinate")
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axes[0, 0].set_aspect("equal", adjustable="box")
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image0 = axes[0, 1].pcolormesh(
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theta,
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radial,
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bmag[:, 0, :],
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shading="auto",
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cmap="viridis",
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)
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axes[0, 1].set_title("Magnetic-field strength at one toroidal plane")
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axes[0, 1].set_xlabel("poloidal angle")
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axes[0, 1].set_ylabel("normalized radius")
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fig.colorbar(image0, ax=axes[0, 1], label="normalized |B|")
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image1 = axes[1, 0].pcolormesh(theta, radial, connection[:, 0, :], shading="auto", cmap="magma")
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axes[1, 0].set_title("Field-line connection-length proxy")
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axes[1, 0].set_xlabel("poloidal angle")
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axes[1, 0].set_ylabel("normalized radius")
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fig.colorbar(image1, ax=axes[1, 0], label="length proxy")
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image2 = axes[1, 1].pcolormesh(
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theta,
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radial,
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curvature[:, 0, :] * radial_shift[:, 0, :],
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shading="auto",
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cmap="coolwarm",
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)
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axes[1, 1].set_title("Curvature-weighted radial map displacement")
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axes[1, 1].set_xlabel("poloidal angle")
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axes[1, 1].set_ylabel("normalized radius")
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fig.colorbar(image2, ax=axes[1, 1], label="signed proxy")
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fig.suptitle(
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"3D non-axisymmetric geometry gate: "
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f"metric residual {float(report['metric']['inverse_residual_linf']):.1e}, "
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f"mirror ratio {float(report['magnetic_field']['mirror_ratio']):.2f}",
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fontsize=12,
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)
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fig.savefig(resolved, dpi=180)
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plt.close(fig)
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return resolved
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def _write_geometry_arrays(geometry: SyntheticStellaratorGeometry, path: Path) -> Path:
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np.savez_compressed(
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path,
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x=np.asarray(geometry.coordinates_x, dtype=np.float32),
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y=np.asarray(geometry.coordinates_y, dtype=np.float32),
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z=np.asarray(geometry.coordinates_z, dtype=np.float32),
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radial=np.asarray(geometry.radial, dtype=np.float32),
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toroidal_angle=np.asarray(geometry.toroidal_angle, dtype=np.float32),
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poloidal_angle=np.asarray(geometry.poloidal_angle, dtype=np.float32),
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Bxy=np.asarray(geometry.metric.Bxy, dtype=np.float32),
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J=np.asarray(geometry.metric.J, dtype=np.float32),
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g_22=np.asarray(geometry.metric.g_22, dtype=np.float32),
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curvature=np.asarray(geometry.curvature, dtype=np.float32),
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connection_length=np.asarray(geometry.connection_length, dtype=np.float32),
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forward_x=np.asarray(geometry.maps.forward_x, dtype=np.float32),
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forward_z=np.asarray(geometry.maps.forward_z, dtype=np.float32),
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backward_x=np.asarray(geometry.maps.backward_x, dtype=np.float32),
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backward_z=np.asarray(geometry.maps.backward_z, dtype=np.float32),
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)
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return path
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from __future__ import annotations
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3
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import json
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4
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+
from dataclasses import dataclass
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5
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+
from pathlib import Path
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6
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+
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7
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+
import jax.numpy as jnp
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8
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from matplotlib import pyplot as plt
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9
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import numpy as np
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10
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+
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11
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from ..geometry import build_synthetic_stellarator_geometry
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12
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+
from ..native.fci import (
|
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13
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conservative_parallel_diffusion_fci,
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14
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+
conservative_perp_diffusion_xz,
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15
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fci_ydown,
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16
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fci_yup,
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17
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+
grad_parallel_fci,
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18
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laplace_parallel_fci,
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19
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+
laplace_perp_xz,
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20
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)
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21
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+
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22
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+
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23
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+
@dataclass(frozen=True)
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24
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class StellaratorFciOperatorCampaignArtifacts:
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25
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report_json_path: Path
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26
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arrays_npz_path: Path
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27
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plot_png_path: Path
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28
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+
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29
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+
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30
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def create_stellarator_fci_operator_campaign_package(
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31
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*,
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32
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output_root: str | Path,
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33
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case_label: str = "stellarator_fci_operator_campaign",
|
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34
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+
) -> StellaratorFciOperatorCampaignArtifacts:
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35
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+
root = Path(output_root)
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36
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data_dir = root / "data"
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37
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images_dir = root / "images"
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38
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data_dir.mkdir(parents=True, exist_ok=True)
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39
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+
images_dir.mkdir(parents=True, exist_ok=True)
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40
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+
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41
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+
report, arrays = build_stellarator_fci_operator_campaign()
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42
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+
report_json_path = data_dir / f"{case_label}.json"
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43
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+
report_json_path.write_text(json.dumps(report, indent=2, sort_keys=True), encoding="utf-8")
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44
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+
arrays_npz_path = data_dir / f"{case_label}.npz"
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45
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+
np.savez_compressed(arrays_npz_path, **arrays)
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46
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+
plot_png_path = images_dir / f"{case_label}.png"
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47
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+
save_stellarator_fci_operator_plot(report, arrays, plot_png_path)
|
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48
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+
return StellaratorFciOperatorCampaignArtifacts(
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49
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+
report_json_path=report_json_path,
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50
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+
arrays_npz_path=arrays_npz_path,
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51
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+
plot_png_path=plot_png_path,
|
|
52
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+
)
|
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53
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+
|
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54
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+
|
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55
|
+
def build_stellarator_fci_operator_campaign() -> tuple[dict[str, object], dict[str, np.ndarray]]:
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56
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+
resolutions = np.asarray([16, 24, 32, 48], dtype=np.int64)
|
|
57
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+
rms_errors = []
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|
58
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+
max_errors = []
|
|
59
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+
grad_rms_errors = []
|
|
60
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+
for resolution in resolutions:
|
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61
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+
geometry = build_synthetic_stellarator_geometry(nx=resolution, ny=resolution, nz=2 * resolution)
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|
62
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+
field = _analytic_field_on_grid(geometry)
|
|
63
|
+
expected_up = _analytic_field_at_maps(geometry, direction=1)
|
|
64
|
+
expected_down = _analytic_field_at_maps(geometry, direction=-1)
|
|
65
|
+
actual_up = np.asarray(fci_yup(jnp.asarray(field), geometry.maps))
|
|
66
|
+
actual_down = np.asarray(fci_ydown(jnp.asarray(field), geometry.maps))
|
|
67
|
+
expected_grad = (expected_up - expected_down) / (2.0 * geometry.maps.dphi)
|
|
68
|
+
actual_grad = np.asarray(grad_parallel_fci(jnp.asarray(field), geometry.maps))
|
|
69
|
+
valid = np.isfinite(expected_up) & np.isfinite(expected_down)
|
|
70
|
+
interp_error = np.concatenate([(actual_up - expected_up)[valid], (actual_down - expected_down)[valid]])
|
|
71
|
+
grad_error = (actual_grad - expected_grad)[valid]
|
|
72
|
+
rms_errors.append(float(np.sqrt(np.mean(interp_error * interp_error))))
|
|
73
|
+
max_errors.append(float(np.max(np.abs(interp_error))))
|
|
74
|
+
grad_rms_errors.append(float(np.sqrt(np.mean(grad_error * grad_error))))
|
|
75
|
+
|
|
76
|
+
h = 1.0 / resolutions.astype(np.float64)
|
|
77
|
+
interp_slope = _fit_convergence_slope(h, np.asarray(rms_errors, dtype=np.float64))
|
|
78
|
+
grad_slope = _fit_convergence_slope(h, np.asarray(grad_rms_errors, dtype=np.float64))
|
|
79
|
+
|
|
80
|
+
diffusion_geometry = build_synthetic_stellarator_geometry(nx=30, ny=28, nz=56)
|
|
81
|
+
diffusion_history, energy_history = _run_parallel_diffusion_probe(diffusion_geometry)
|
|
82
|
+
conservative_history, conservative_energy_history, constant_residual = _run_conservative_diffusion_probe(diffusion_geometry)
|
|
83
|
+
final_geometry = build_synthetic_stellarator_geometry(nx=32, ny=32, nz=64)
|
|
84
|
+
final_field = _analytic_field_on_grid(final_geometry)
|
|
85
|
+
final_up_error = np.asarray(
|
|
86
|
+
fci_yup(jnp.asarray(final_field), final_geometry.maps)
|
|
87
|
+
) - _analytic_field_at_maps(final_geometry, direction=1)
|
|
88
|
+
report = {
|
|
89
|
+
"case": "non_axisymmetric_fci_operator_validation",
|
|
90
|
+
"resolution": resolutions.tolist(),
|
|
91
|
+
"interpolation_rms_error": rms_errors,
|
|
92
|
+
"interpolation_max_error": max_errors,
|
|
93
|
+
"gradient_rms_error": grad_rms_errors,
|
|
94
|
+
"interpolation_convergence_slope": float(interp_slope),
|
|
95
|
+
"gradient_convergence_slope": float(grad_slope),
|
|
96
|
+
"diffusion_energy_initial": float(energy_history[0]),
|
|
97
|
+
"diffusion_energy_final": float(energy_history[-1]),
|
|
98
|
+
"diffusion_energy_monotone_fraction": float(np.mean(np.diff(energy_history) <= 1.0e-12)),
|
|
99
|
+
"diffusion_energy_drop_fraction": float(1.0 - energy_history[-1] / energy_history[0]),
|
|
100
|
+
"conservative_diffusion_energy_initial": float(conservative_energy_history[0]),
|
|
101
|
+
"conservative_diffusion_energy_final": float(conservative_energy_history[-1]),
|
|
102
|
+
"conservative_diffusion_energy_monotone_fraction": float(np.mean(np.diff(conservative_energy_history) <= 1.0e-12)),
|
|
103
|
+
"conservative_diffusion_energy_drop_fraction": float(
|
|
104
|
+
1.0 - conservative_energy_history[-1] / conservative_energy_history[0]
|
|
105
|
+
),
|
|
106
|
+
"conservative_constant_residual_linf": float(constant_residual),
|
|
107
|
+
}
|
|
108
|
+
report["passed"] = (
|
|
109
|
+
report["interpolation_convergence_slope"] > 1.55
|
|
110
|
+
and report["gradient_convergence_slope"] > 1.35
|
|
111
|
+
and report["diffusion_energy_final"] < report["diffusion_energy_initial"]
|
|
112
|
+
and report["diffusion_energy_monotone_fraction"] > 0.95
|
|
113
|
+
and report["conservative_diffusion_energy_final"] < report["conservative_diffusion_energy_initial"]
|
|
114
|
+
and report["conservative_diffusion_energy_monotone_fraction"] > 0.95
|
|
115
|
+
and report["conservative_constant_residual_linf"] < 1.0e-10
|
|
116
|
+
)
|
|
117
|
+
arrays = {
|
|
118
|
+
"resolution": resolutions,
|
|
119
|
+
"mesh_spacing": h,
|
|
120
|
+
"interpolation_rms_error": np.asarray(rms_errors, dtype=np.float64),
|
|
121
|
+
"interpolation_max_error": np.asarray(max_errors, dtype=np.float64),
|
|
122
|
+
"gradient_rms_error": np.asarray(grad_rms_errors, dtype=np.float64),
|
|
123
|
+
"diffusion_final_slice": diffusion_history[-1, :, 0, :].astype(np.float32),
|
|
124
|
+
"diffusion_energy_history": energy_history,
|
|
125
|
+
"conservative_diffusion_final_slice": conservative_history[-1, :, 0, :].astype(np.float32),
|
|
126
|
+
"conservative_diffusion_energy_history": conservative_energy_history,
|
|
127
|
+
"operator_error_slice": final_up_error[:, 0, :].astype(np.float32),
|
|
128
|
+
"operator_field_slice": final_field[:, 0, :].astype(np.float32),
|
|
129
|
+
}
|
|
130
|
+
return report, arrays
|
|
131
|
+
|
|
132
|
+
|
|
133
|
+
def save_stellarator_fci_operator_plot(
|
|
134
|
+
report: dict[str, object],
|
|
135
|
+
arrays: dict[str, np.ndarray],
|
|
136
|
+
path: str | Path,
|
|
137
|
+
) -> Path:
|
|
138
|
+
resolved = Path(path)
|
|
139
|
+
resolved.parent.mkdir(parents=True, exist_ok=True)
|
|
140
|
+
fig, axes = plt.subplots(2, 3, figsize=(15.8, 8.6), constrained_layout=True)
|
|
141
|
+
axes[0, 0].loglog(
|
|
142
|
+
arrays["mesh_spacing"],
|
|
143
|
+
arrays["interpolation_rms_error"],
|
|
144
|
+
"o-",
|
|
145
|
+
color="#005f73",
|
|
146
|
+
linewidth=2.0,
|
|
147
|
+
label="interpolation",
|
|
148
|
+
)
|
|
149
|
+
axes[0, 0].loglog(
|
|
150
|
+
arrays["mesh_spacing"],
|
|
151
|
+
arrays["gradient_rms_error"],
|
|
152
|
+
"s-",
|
|
153
|
+
color="#ca6702",
|
|
154
|
+
linewidth=2.0,
|
|
155
|
+
label="parallel gradient",
|
|
156
|
+
)
|
|
157
|
+
axes[0, 0].invert_xaxis()
|
|
158
|
+
axes[0, 0].set_xlabel("logical mesh spacing")
|
|
159
|
+
axes[0, 0].set_ylabel("RMS error")
|
|
160
|
+
axes[0, 0].set_title("FCI operator convergence on analytic field-line maps")
|
|
161
|
+
axes[0, 0].legend(frameon=False)
|
|
162
|
+
|
|
163
|
+
time_index = np.arange(arrays["diffusion_energy_history"].size)
|
|
164
|
+
axes[0, 1].plot(time_index, arrays["diffusion_energy_history"], color="#9b2226", linewidth=2.0)
|
|
165
|
+
axes[0, 1].set_xlabel("explicit diffusion step")
|
|
166
|
+
axes[0, 1].set_ylabel("mean fluctuation energy")
|
|
167
|
+
axes[0, 1].set_title("compact parallel diffusion energy")
|
|
168
|
+
|
|
169
|
+
conservative_time_index = np.arange(arrays["conservative_diffusion_energy_history"].size)
|
|
170
|
+
axes[0, 2].plot(
|
|
171
|
+
conservative_time_index,
|
|
172
|
+
arrays["conservative_diffusion_energy_history"],
|
|
173
|
+
color="#0a9396",
|
|
174
|
+
linewidth=2.0,
|
|
175
|
+
)
|
|
176
|
+
axes[0, 2].set_xlabel("explicit diffusion step")
|
|
177
|
+
axes[0, 2].set_ylabel("mean fluctuation energy")
|
|
178
|
+
axes[0, 2].set_title("metric-weighted conservative diffusion")
|
|
179
|
+
|
|
180
|
+
image0 = axes[1, 0].imshow(arrays["operator_field_slice"], origin="lower", aspect="auto", cmap="viridis")
|
|
181
|
+
axes[1, 0].set_title("Analytic validation field at one toroidal plane")
|
|
182
|
+
axes[1, 0].set_xlabel("poloidal index")
|
|
183
|
+
axes[1, 0].set_ylabel("radial index")
|
|
184
|
+
fig.colorbar(image0, ax=axes[1, 0])
|
|
185
|
+
|
|
186
|
+
image1 = axes[1, 1].imshow(arrays["operator_error_slice"], origin="lower", aspect="auto", cmap="coolwarm")
|
|
187
|
+
axes[1, 1].set_title("Forward-map interpolation error")
|
|
188
|
+
axes[1, 1].set_xlabel("poloidal index")
|
|
189
|
+
axes[1, 1].set_ylabel("radial index")
|
|
190
|
+
fig.colorbar(image1, ax=axes[1, 1])
|
|
191
|
+
|
|
192
|
+
image2 = axes[1, 2].imshow(arrays["conservative_diffusion_final_slice"], origin="lower", aspect="auto", cmap="magma")
|
|
193
|
+
axes[1, 2].set_title("Final conservative-diffusion field")
|
|
194
|
+
axes[1, 2].set_xlabel("poloidal index")
|
|
195
|
+
axes[1, 2].set_ylabel("radial index")
|
|
196
|
+
fig.colorbar(image2, ax=axes[1, 2])
|
|
197
|
+
fig.suptitle(
|
|
198
|
+
"3D FCI operator gate: "
|
|
199
|
+
f"slope {float(report['interpolation_convergence_slope']):.2f}, "
|
|
200
|
+
f"conservative drop {100.0 * float(report['conservative_diffusion_energy_drop_fraction']):.1f}%",
|
|
201
|
+
fontsize=12,
|
|
202
|
+
)
|
|
203
|
+
fig.savefig(resolved, dpi=180)
|
|
204
|
+
plt.close(fig)
|
|
205
|
+
return resolved
|
|
206
|
+
|
|
207
|
+
|
|
208
|
+
def _analytic_field_on_grid(geometry: object) -> np.ndarray:
|
|
209
|
+
s = np.asarray(geometry.radial, dtype=np.float64)
|
|
210
|
+
phi = np.asarray(geometry.toroidal_angle, dtype=np.float64)
|
|
211
|
+
theta = np.asarray(geometry.poloidal_angle, dtype=np.float64)
|
|
212
|
+
return _analytic_field(s=s, phi=phi, theta=theta)
|
|
213
|
+
|
|
214
|
+
|
|
215
|
+
def _analytic_field_at_maps(geometry: object, *, direction: int) -> np.ndarray:
|
|
216
|
+
maps = geometry.maps
|
|
217
|
+
nx, ny, nz = maps.shape
|
|
218
|
+
if direction > 0:
|
|
219
|
+
x_index = np.asarray(maps.forward_x, dtype=np.float64)
|
|
220
|
+
z_index = np.asarray(maps.forward_z, dtype=np.float64)
|
|
221
|
+
y_index = (np.arange(ny)[None, :, None] + 1) % ny
|
|
222
|
+
else:
|
|
223
|
+
x_index = np.asarray(maps.backward_x, dtype=np.float64)
|
|
224
|
+
z_index = np.asarray(maps.backward_z, dtype=np.float64)
|
|
225
|
+
y_index = (np.arange(ny)[None, :, None] - 1) % ny
|
|
226
|
+
s = 0.08 + np.clip(x_index, 0.0, nx - 1.0) / float(nx - 1) * (1.0 - 0.08)
|
|
227
|
+
phi = 2.0 * np.pi * y_index / float(ny)
|
|
228
|
+
theta = 2.0 * np.pi * np.mod(z_index, nz) / float(nz)
|
|
229
|
+
values = _analytic_field(s=s, phi=phi, theta=theta)
|
|
230
|
+
valid = (x_index >= 0.0) & (x_index <= nx - 1.0)
|
|
231
|
+
return np.where(valid, values, 0.0)
|
|
232
|
+
|
|
233
|
+
|
|
234
|
+
def _analytic_field(*, s: np.ndarray, phi: np.ndarray, theta: np.ndarray) -> np.ndarray:
|
|
235
|
+
return (
|
|
236
|
+
np.sin(np.pi * s) * np.cos(2.0 * theta - 5.0 * phi)
|
|
237
|
+
+ 0.28 * s**2 * np.sin(3.0 * theta + 2.0 * phi)
|
|
238
|
+
+ 0.11 * np.cos(theta - phi) * (1.0 - s)
|
|
239
|
+
)
|
|
240
|
+
|
|
241
|
+
|
|
242
|
+
def _run_parallel_diffusion_probe(geometry: object) -> tuple[np.ndarray, np.ndarray]:
|
|
243
|
+
field = jnp.asarray(_analytic_field_on_grid(geometry), dtype=jnp.float64)
|
|
244
|
+
dx = float(1.0 / (geometry.maps.shape[0] - 1))
|
|
245
|
+
dz = float(2.0 * np.pi / geometry.maps.shape[2])
|
|
246
|
+
dt = 3.0e-4
|
|
247
|
+
chi_parallel = 0.018
|
|
248
|
+
chi_perp = 4.0e-5
|
|
249
|
+
snapshots = []
|
|
250
|
+
energy = []
|
|
251
|
+
for step in range(80):
|
|
252
|
+
if step % 4 == 0:
|
|
253
|
+
snapshots.append(np.asarray(field))
|
|
254
|
+
energy.append(float(jnp.mean(jnp.square(field))))
|
|
255
|
+
rhs = chi_parallel * laplace_parallel_fci(field, geometry.maps) + chi_perp * laplace_perp_xz(
|
|
256
|
+
field,
|
|
257
|
+
dx=dx,
|
|
258
|
+
dz=dz,
|
|
259
|
+
)
|
|
260
|
+
field = field + dt * rhs
|
|
261
|
+
snapshots.append(np.asarray(field))
|
|
262
|
+
energy.append(float(jnp.mean(jnp.square(field))))
|
|
263
|
+
return np.asarray(snapshots, dtype=np.float64), np.asarray(energy, dtype=np.float64)
|
|
264
|
+
|
|
265
|
+
|
|
266
|
+
def _run_conservative_diffusion_probe(geometry: object) -> tuple[np.ndarray, np.ndarray, float]:
|
|
267
|
+
field = jnp.asarray(_analytic_field_on_grid(geometry), dtype=jnp.float64)
|
|
268
|
+
radial = jnp.asarray(geometry.radial, dtype=jnp.float64)
|
|
269
|
+
coefficient = 0.015 + 0.010 * radial
|
|
270
|
+
constant = jnp.ones_like(field, dtype=jnp.float64)
|
|
271
|
+
constant_residual = jnp.max(
|
|
272
|
+
jnp.abs(
|
|
273
|
+
conservative_parallel_diffusion_fci(
|
|
274
|
+
constant,
|
|
275
|
+
coefficient,
|
|
276
|
+
geometry.maps,
|
|
277
|
+
jacobian=geometry.metric.J,
|
|
278
|
+
)
|
|
279
|
+
+ conservative_perp_diffusion_xz(constant, 2.5e-4 * coefficient, geometry.metric)
|
|
280
|
+
)
|
|
281
|
+
)
|
|
282
|
+
dt = 1.0e-4
|
|
283
|
+
snapshots = []
|
|
284
|
+
energy = []
|
|
285
|
+
for step in range(80):
|
|
286
|
+
if step % 4 == 0:
|
|
287
|
+
snapshots.append(np.asarray(field))
|
|
288
|
+
energy.append(float(jnp.mean(jnp.square(field))))
|
|
289
|
+
rhs = conservative_parallel_diffusion_fci(
|
|
290
|
+
field,
|
|
291
|
+
coefficient,
|
|
292
|
+
geometry.maps,
|
|
293
|
+
jacobian=geometry.metric.J,
|
|
294
|
+
) + conservative_perp_diffusion_xz(field, 2.5e-4 * coefficient, geometry.metric)
|
|
295
|
+
field = field + dt * rhs
|
|
296
|
+
snapshots.append(np.asarray(field))
|
|
297
|
+
energy.append(float(jnp.mean(jnp.square(field))))
|
|
298
|
+
return np.asarray(snapshots, dtype=np.float64), np.asarray(energy, dtype=np.float64), float(constant_residual)
|
|
299
|
+
|
|
300
|
+
|
|
301
|
+
def _fit_convergence_slope(h: np.ndarray, error: np.ndarray) -> float:
|
|
302
|
+
safe = np.maximum(error, 1.0e-16)
|
|
303
|
+
slope, _ = np.polyfit(np.log(h), np.log(safe), 1)
|
|
304
|
+
return float(slope)
|