drbx 2.0.0.dev0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- drbx/__init__.py +20 -0
- drbx/__main__.py +5 -0
- drbx/cli.py +586 -0
- drbx/config/__init__.py +20 -0
- drbx/config/boutinp.py +556 -0
- drbx/config/model.py +34 -0
- drbx/config/normalization.py +66 -0
- drbx/data/atomic_rates/__init__.py +1 -0
- drbx/data/atomic_rates/iz_AMJUEL_H.x_2.1.5.json +213 -0
- drbx/data/atomic_rates/iz_AMJUEL_H.x_2.3.9a.json +213 -0
- drbx/data/atomic_rates/rec_AMJUEL_H.x_2.1.8.json +213 -0
- drbx/data/atomic_rates/rec_AMJUEL_H.x_2.3.13a.json +213 -0
- drbx/geometry/__init__.py +207 -0
- drbx/geometry/embedding.py +56 -0
- drbx/geometry/essos_import.py +1385 -0
- drbx/geometry/fci_geometry.py +4622 -0
- drbx/geometry/fci_maps.py +85 -0
- drbx/geometry/island_divertor.py +291 -0
- drbx/geometry/metric_tensor.py +99 -0
- drbx/geometry/open_slab.py +150 -0
- drbx/geometry/rotating_ellipse.py +253 -0
- drbx/geometry/shifted_torus.py +225 -0
- drbx/geometry/stellarator.py +287 -0
- drbx/geometry/vmec_extender_import.py +499 -0
- drbx/geometry/vmec_jax_import.py +306 -0
- drbx/linear/__init__.py +37 -0
- drbx/linear/dispersion.py +138 -0
- drbx/linear/eigen.py +91 -0
- drbx/native/__init__.py +224 -0
- drbx/native/array_backend.py +64 -0
- drbx/native/deck_runner.py +779 -0
- drbx/native/electromagnetic.py +250 -0
- drbx/native/expression.py +173 -0
- drbx/native/fci.py +295 -0
- drbx/native/fci_2_field_rhs.py +182 -0
- drbx/native/fci_4_field_rhs.py +1267 -0
- drbx/native/fci_boundaries.py +2494 -0
- drbx/native/fci_differentiable_case.py +304 -0
- drbx/native/fci_drb_EB_rhs.py +1243 -0
- drbx/native/fci_drb_rhs.py +190 -0
- drbx/native/fci_halo.py +1575 -0
- drbx/native/fci_helpers.py +350 -0
- drbx/native/fci_model.py +294 -0
- drbx/native/fci_neutral.py +139 -0
- drbx/native/fci_operators.py +4081 -0
- drbx/native/fci_sharding.py +597 -0
- drbx/native/fci_sheath_recycling.py +206 -0
- drbx/native/fci_time_integrator.py +96 -0
- drbx/native/fci_vorticity.py +198 -0
- drbx/native/fluid_1d.py +330 -0
- drbx/native/hasegawa_wakatani.py +196 -0
- drbx/native/limiters.py +57 -0
- drbx/native/mesh.py +238 -0
- drbx/native/metrics.py +234 -0
- drbx/native/neutrals/__init__.py +58 -0
- drbx/native/neutrals/atomic_rates.py +134 -0
- drbx/native/neutrals/detachment_sol_model.py +221 -0
- drbx/native/neutrals/reactions.py +164 -0
- drbx/native/neutrals/recycling_sol_model.py +197 -0
- drbx/native/sol_flux_tube.py +133 -0
- drbx/native/stellarator_turbulence.py +343 -0
- drbx/native/transport.py +134 -0
- drbx/native/units.py +32 -0
- drbx/native/vorticity.py +252 -0
- drbx/runtime/__init__.py +53 -0
- drbx/runtime/artifacts.py +161 -0
- drbx/runtime/memory.py +144 -0
- drbx/runtime/output.py +374 -0
- drbx/runtime/paths.py +9 -0
- drbx/runtime/performance.py +161 -0
- drbx/runtime/run_config.py +184 -0
- drbx/runtime/scheduler.py +99 -0
- drbx/runtime/state.py +40 -0
- drbx/validation/__init__.py +424 -0
- drbx/validation/autodiff_diffusion.py +329 -0
- drbx/validation/autodiff_diffusion_uncertainty.py +235 -0
- drbx/validation/diverted_tokamak_movie.py +558 -0
- drbx/validation/essos_fieldline_import_campaign.py +181 -0
- drbx/validation/essos_imported_artifact_audit.py +535 -0
- drbx/validation/essos_imported_drb_movie_campaign.py +2826 -0
- drbx/validation/essos_imported_fci_campaign.py +5241 -0
- drbx/validation/essos_imported_pytree_campaign.py +406 -0
- drbx/validation/essos_vmec_closed_field_campaign.py +314 -0
- drbx/validation/essos_vmec_closed_field_transient_campaign.py +629 -0
- drbx/validation/essos_vmec_fieldline_surface_campaign.py +620 -0
- drbx/validation/fluid_1d_mms_convergence.py +250 -0
- drbx/validation/geometry_lineouts.py +136 -0
- drbx/validation/geometry_slices.py +178 -0
- drbx/validation/publication_plotting.py +91 -0
- drbx/validation/stellarator_drb_pytree_campaign.py +621 -0
- drbx/validation/stellarator_fci_geometry_campaign.py +200 -0
- drbx/validation/stellarator_fci_operator_campaign.py +304 -0
- drbx/validation/stellarator_fci_suite_campaign.py +264 -0
- drbx/validation/stellarator_metric_mms_campaign.py +289 -0
- drbx/validation/stellarator_neutral_physics_campaign.py +255 -0
- drbx/validation/stellarator_sheath_recycling_campaign.py +331 -0
- drbx/validation/stellarator_sol_showcase.py +628 -0
- drbx/validation/stellarator_vorticity_campaign.py +304 -0
- drbx/validation/vmec_extender_edge_field_campaign.py +260 -0
- drbx/validation/vmec_extender_sol_smoke_campaign.py +365 -0
- drbx-2.0.0.dev0.dist-info/METADATA +380 -0
- drbx-2.0.0.dev0.dist-info/RECORD +106 -0
- drbx-2.0.0.dev0.dist-info/WHEEL +5 -0
- drbx-2.0.0.dev0.dist-info/entry_points.txt +2 -0
- drbx-2.0.0.dev0.dist-info/licenses/LICENSE +21 -0
- drbx-2.0.0.dev0.dist-info/top_level.txt +1 -0
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from __future__ import annotations
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from dataclasses import dataclass
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import jax
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import jax.numpy as jnp
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from ..geometry import (
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ConservativeStencilBuilder,
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FciGeometry3D,
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LocalStencilBuilder,
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build_conservative_stencil_from_field,
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build_local_stencil_from_field,
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)
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from .fci_model import FciModelState
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from .fci_boundaries import (
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BoundaryFaceBC3D,
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ConservativeStencil3D,
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CutWallBC3D,
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CutWallGeometry3D,
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LocalStencil1D,
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LocalStencil3D,
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)
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from .fci_operators import (
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curvature_op,
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grad_parallel_op_direct,
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parallel_laplacian_direct_op,
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perp_laplacian_conservative_op,
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poisson_bracket_op,
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)
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@jax.tree_util.register_pytree_node_class
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@dataclass(frozen=True)
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class FciDrbEBState(FciModelState):
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"""State for the electrostatic Boussinesq drift-reduced Braginskii scaffold."""
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density: jax.Array
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phi: jax.Array
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Te: jax.Array
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Ti: jax.Array
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Vi: jax.Array
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Ve: jax.Array
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vorticity: jax.Array
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@jax.tree_util.register_pytree_node_class
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@dataclass(frozen=True)
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class FciDrbEBBoundaryConditions:
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"""Per-field boundary payload for the electrostatic Boussinesq DRB model."""
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density_face_bc: BoundaryFaceBC3D
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density_cut_wall_bc: CutWallBC3D
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potential_face_bc: BoundaryFaceBC3D
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potential_cut_wall_bc: CutWallBC3D
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vorticity_face_bc: BoundaryFaceBC3D
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vorticity_cut_wall_bc: CutWallBC3D
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Te_face_bc: BoundaryFaceBC3D
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Te_cut_wall_bc: CutWallBC3D
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Ti_face_bc: BoundaryFaceBC3D
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Ti_cut_wall_bc: CutWallBC3D
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Vi_face_bc: BoundaryFaceBC3D
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Vi_cut_wall_bc: CutWallBC3D
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Ve_face_bc: BoundaryFaceBC3D
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Ve_cut_wall_bc: CutWallBC3D
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def tree_flatten(self):
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return (
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(
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self.density_face_bc,
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self.density_cut_wall_bc,
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self.potential_face_bc,
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self.potential_cut_wall_bc,
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self.vorticity_face_bc,
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self.vorticity_cut_wall_bc,
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self.Te_face_bc,
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self.Te_cut_wall_bc,
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self.Ti_face_bc,
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self.Ti_cut_wall_bc,
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self.Vi_face_bc,
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self.Vi_cut_wall_bc,
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self.Ve_face_bc,
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self.Ve_cut_wall_bc,
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),
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None,
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)
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@classmethod
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def tree_unflatten(cls, _aux_data, children):
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return cls(*children)
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@jax.tree_util.register_pytree_node_class
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@dataclass(frozen=True)
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class FciDrbEBRhsParameters:
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"""Physical normalization constants for the electrostatic Boussinesq DRB scaffold."""
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n0: float = 1.0
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Te0: float = 1.0
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Ti0: float = 1.0
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cs_0: float = 1.0
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rhos_s0: float = 1.0
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tau: float = 1.0
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mi_over_me: float = 1836.0
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rho_star: float = 1.0
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phi_inversion_iterations: int = 80
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phi_inversion_regularization: float = 1.0e-9
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density_D_perp: float = 0.0
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density_D_parallel: float = 0.0
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electron_temperature_chi_parallel: float = 0.0
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electron_temperature_D_perp: float = 0.0
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ion_temperature_chi_parallel: float = 0.0
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ion_temperature_D_perp: float = 0.0
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Ve_nu: float = 0.0
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Ve_D_perp: float = 0.0
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Ve_D_parallel: float = 0.0
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Vi_D_perp: float = 0.0
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Vi_D_parallel: float = 0.0
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vorticity_D_perp: float = 0.0
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vorticity_D_parallel: float = 0.0
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def tree_flatten(self):
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return (
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(
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self.n0,
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self.Te0,
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self.Ti0,
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self.cs_0,
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self.rhos_s0,
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self.tau,
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self.mi_over_me,
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self.rho_star,
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self.phi_inversion_iterations,
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self.phi_inversion_regularization,
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self.density_D_perp,
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self.density_D_parallel,
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self.electron_temperature_chi_parallel,
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self.electron_temperature_D_perp,
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self.ion_temperature_chi_parallel,
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self.ion_temperature_D_perp,
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self.Ve_nu,
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self.Ve_D_perp,
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self.Ve_D_parallel,
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self.Vi_D_perp,
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self.Vi_D_parallel,
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self.vorticity_D_perp,
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self.vorticity_D_parallel,
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),
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None,
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)
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@classmethod
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def tree_unflatten(cls, _aux_data, children):
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(
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n0,
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Te0,
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Ti0,
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cs_0,
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rhos_s0,
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tau,
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mi_over_me,
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rho_star,
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phi_inversion_iterations,
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phi_inversion_regularization,
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density_D_perp,
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density_D_parallel,
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electron_temperature_chi_parallel,
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electron_temperature_D_perp,
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ion_temperature_chi_parallel,
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ion_temperature_D_perp,
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Ve_nu,
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Ve_D_perp,
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Ve_D_parallel,
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Vi_D_perp,
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Vi_D_parallel,
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vorticity_D_perp,
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vorticity_D_parallel,
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) = children
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return cls(
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n0=n0,
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Te0=Te0,
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Ti0=Ti0,
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cs_0=cs_0,
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rhos_s0=rhos_s0,
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tau=tau,
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mi_over_me=mi_over_me,
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rho_star=rho_star,
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phi_inversion_iterations=phi_inversion_iterations,
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phi_inversion_regularization=phi_inversion_regularization,
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density_D_perp=density_D_perp,
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density_D_parallel=density_D_parallel,
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electron_temperature_chi_parallel=electron_temperature_chi_parallel,
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electron_temperature_D_perp=electron_temperature_D_perp,
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ion_temperature_chi_parallel=ion_temperature_chi_parallel,
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ion_temperature_D_perp=ion_temperature_D_perp,
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Ve_nu=Ve_nu,
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Ve_D_perp=Ve_D_perp,
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Ve_D_parallel=Ve_D_parallel,
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Vi_D_perp=Vi_D_perp,
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Vi_D_parallel=Vi_D_parallel,
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vorticity_D_perp=vorticity_D_perp,
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vorticity_D_parallel=vorticity_D_parallel,
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)
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@dataclass(frozen=True)
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class FciDrbEBRhsResult:
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rhs: FciDrbEBState
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potential: jax.Array
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potential_residual_l2: jax.Array
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def tree_flatten(self):
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return ((self.rhs, self.potential, self.potential_residual_l2), None)
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@classmethod
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def tree_unflatten(cls, _aux_data, children):
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rhs, potential, potential_residual_l2 = children
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return cls(rhs=rhs, potential=potential, potential_residual_l2=potential_residual_l2)
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def _multiply_local_stencils(left: LocalStencil3D, right: LocalStencil3D) -> LocalStencil3D:
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"""Multiply two boundary-complete local stencils pointwise."""
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def _multiply_axis(left_axis: LocalStencil1D, right_axis: LocalStencil1D) -> LocalStencil1D:
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return left_axis.replace(
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center=left_axis.center * right_axis.center,
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minus=left_axis.minus * right_axis.minus,
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plus=left_axis.plus * right_axis.plus,
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derivative_minus_weight=left_axis.derivative_minus_weight,
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derivative_center_weight=left_axis.derivative_center_weight,
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derivative_plus_weight=left_axis.derivative_plus_weight,
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)
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return LocalStencil3D(
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|
+
x=_multiply_axis(left.x, right.x),
|
|
237
|
+
y=_multiply_axis(left.y, right.y),
|
|
238
|
+
z=_multiply_axis(left.z, right.z),
|
|
239
|
+
)
|
|
240
|
+
|
|
241
|
+
|
|
242
|
+
def _density_rhs(
|
|
243
|
+
*,
|
|
244
|
+
density: jnp.ndarray,
|
|
245
|
+
geometry: FciGeometry3D,
|
|
246
|
+
parameters: FciDrbEBRhsParameters,
|
|
247
|
+
curvature_coefficients: jnp.ndarray,
|
|
248
|
+
density_stencil: LocalStencil3D,
|
|
249
|
+
potential_stencil: LocalStencil3D,
|
|
250
|
+
Pe_stencil: LocalStencil3D,
|
|
251
|
+
Ve_stencil: LocalStencil3D,
|
|
252
|
+
density_conservative_stencil: ConservativeStencil3D | None,
|
|
253
|
+
density_face_bc: BoundaryFaceBC3D,
|
|
254
|
+
density_cut_wall_geometry: CutWallGeometry3D | None,
|
|
255
|
+
density_cut_wall_bc: CutWallBC3D | None,
|
|
256
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
257
|
+
b_floor: float = 1.0e-30,
|
|
258
|
+
jacobian_floor: float = 1.0e-30,
|
|
259
|
+
) -> jnp.ndarray:
|
|
260
|
+
"""Assemble the density RHS with prebuilt stencils and geometry inputs."""
|
|
261
|
+
|
|
262
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
263
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
264
|
+
density_D_perp = jnp.asarray(parameters.density_D_perp, dtype=jnp.float64)
|
|
265
|
+
density_D_parallel = jnp.asarray(parameters.density_D_parallel, dtype=jnp.float64)
|
|
266
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
267
|
+
|
|
268
|
+
poisson_bracket_density = poisson_bracket_op(potential_stencil, density_stencil, geometry)
|
|
269
|
+
particle_flux_parallel_stencil = _multiply_local_stencils(density_stencil, Ve_stencil)
|
|
270
|
+
parallel_density_flux = grad_parallel_op_direct(particle_flux_parallel_stencil, geometry)
|
|
271
|
+
curvature_Pe = curvature_op(
|
|
272
|
+
Pe_stencil,
|
|
273
|
+
geometry,
|
|
274
|
+
curvature_coefficients=curvature_coefficients,
|
|
275
|
+
)
|
|
276
|
+
curvature_potential = curvature_op(
|
|
277
|
+
potential_stencil,
|
|
278
|
+
geometry,
|
|
279
|
+
curvature_coefficients=curvature_coefficients,
|
|
280
|
+
)
|
|
281
|
+
perp_diffusion_density = jnp.zeros_like(density)
|
|
282
|
+
if float(density_D_perp) != 0.0:
|
|
283
|
+
if density_conservative_stencil is None:
|
|
284
|
+
raise ValueError("density_conservative_stencil is required when density_D_perp is nonzero")
|
|
285
|
+
perp_diffusion_density = density_D_perp * perp_laplacian_conservative_op(
|
|
286
|
+
density_conservative_stencil,
|
|
287
|
+
geometry,
|
|
288
|
+
face_bc=density_face_bc,
|
|
289
|
+
cut_wall_geometry=density_cut_wall_geometry,
|
|
290
|
+
cut_wall_bc=density_cut_wall_bc,
|
|
291
|
+
periodic_axes=periodic_axes,
|
|
292
|
+
b_floor=b_floor,
|
|
293
|
+
jacobian_floor=jacobian_floor,
|
|
294
|
+
)
|
|
295
|
+
parallel_diffusion_density = jnp.zeros_like(density)
|
|
296
|
+
if float(density_D_parallel) != 0.0:
|
|
297
|
+
parallel_diffusion_density = density_D_parallel * parallel_laplacian_direct_op(
|
|
298
|
+
density,
|
|
299
|
+
geometry,
|
|
300
|
+
face_bc=density_face_bc,
|
|
301
|
+
periodic_axes=periodic_axes,
|
|
302
|
+
)
|
|
303
|
+
|
|
304
|
+
return (
|
|
305
|
+
-(poisson_bracket_density / (rho_star * bmag))
|
|
306
|
+
- parallel_density_flux
|
|
307
|
+
+ (2.0 / bmag) * (curvature_Pe - density * curvature_potential)
|
|
308
|
+
+ perp_diffusion_density
|
|
309
|
+
+ parallel_diffusion_density
|
|
310
|
+
)
|
|
311
|
+
|
|
312
|
+
|
|
313
|
+
def _Te_rhs(
|
|
314
|
+
*,
|
|
315
|
+
Te: jnp.ndarray,
|
|
316
|
+
density: jnp.ndarray,
|
|
317
|
+
Vi: jnp.ndarray,
|
|
318
|
+
Ve: jnp.ndarray,
|
|
319
|
+
geometry: FciGeometry3D,
|
|
320
|
+
parameters: FciDrbEBRhsParameters,
|
|
321
|
+
curvature_coefficients: jnp.ndarray,
|
|
322
|
+
temperature_stencil: LocalStencil3D,
|
|
323
|
+
density_stencil: LocalStencil3D,
|
|
324
|
+
potential_stencil: LocalStencil3D,
|
|
325
|
+
Pe_stencil: LocalStencil3D,
|
|
326
|
+
current_density_stencil: LocalStencil3D,
|
|
327
|
+
Ve_stencil: LocalStencil3D,
|
|
328
|
+
temperature_conservative_stencil: ConservativeStencil3D | None,
|
|
329
|
+
temperature_face_bc: BoundaryFaceBC3D,
|
|
330
|
+
temperature_cut_wall_geometry: CutWallGeometry3D | None,
|
|
331
|
+
temperature_cut_wall_bc: CutWallBC3D | None,
|
|
332
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
333
|
+
b_floor: float = 1.0e-30,
|
|
334
|
+
jacobian_floor: float = 1.0e-30,
|
|
335
|
+
) -> jnp.ndarray:
|
|
336
|
+
"""Assemble the electron temperature RHS with prebuilt stencils and geometry inputs."""
|
|
337
|
+
|
|
338
|
+
Te = jnp.asarray(Te, dtype=jnp.float64)
|
|
339
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
340
|
+
Vi = jnp.asarray(Vi, dtype=jnp.float64)
|
|
341
|
+
Ve = jnp.asarray(Ve, dtype=jnp.float64)
|
|
342
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
343
|
+
chi_parallel = jnp.asarray(parameters.electron_temperature_chi_parallel, dtype=jnp.float64)
|
|
344
|
+
D_perp = jnp.asarray(parameters.electron_temperature_D_perp, dtype=jnp.float64)
|
|
345
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
346
|
+
|
|
347
|
+
poisson_bracket_te = poisson_bracket_op(potential_stencil, temperature_stencil, geometry)
|
|
348
|
+
parallel_advection_te = Ve * grad_parallel_op_direct(temperature_stencil, geometry)
|
|
349
|
+
curvature_Pe = curvature_op(
|
|
350
|
+
Pe_stencil,
|
|
351
|
+
geometry,
|
|
352
|
+
curvature_coefficients=curvature_coefficients,
|
|
353
|
+
)
|
|
354
|
+
curvature_temperature = curvature_op(
|
|
355
|
+
temperature_stencil,
|
|
356
|
+
geometry,
|
|
357
|
+
curvature_coefficients=curvature_coefficients,
|
|
358
|
+
)
|
|
359
|
+
curvature_potential = curvature_op(
|
|
360
|
+
potential_stencil,
|
|
361
|
+
geometry,
|
|
362
|
+
curvature_coefficients=curvature_coefficients,
|
|
363
|
+
)
|
|
364
|
+
parallel_current_density = grad_parallel_op_direct(current_density_stencil, geometry)
|
|
365
|
+
parallel_Ve = grad_parallel_op_direct(Ve_stencil, geometry)
|
|
366
|
+
perp_diffusion_te = jnp.zeros_like(Te)
|
|
367
|
+
if float(D_perp) != 0.0:
|
|
368
|
+
if temperature_conservative_stencil is None:
|
|
369
|
+
raise ValueError("temperature_conservative_stencil is required when electron_temperature_D_perp is nonzero")
|
|
370
|
+
perp_diffusion_te = D_perp * perp_laplacian_conservative_op(
|
|
371
|
+
temperature_conservative_stencil,
|
|
372
|
+
geometry,
|
|
373
|
+
face_bc=temperature_face_bc,
|
|
374
|
+
cut_wall_geometry=temperature_cut_wall_geometry,
|
|
375
|
+
cut_wall_bc=temperature_cut_wall_bc,
|
|
376
|
+
periodic_axes=periodic_axes,
|
|
377
|
+
b_floor=b_floor,
|
|
378
|
+
jacobian_floor=jacobian_floor,
|
|
379
|
+
)
|
|
380
|
+
parallel_diffusion_te = jnp.zeros_like(Te)
|
|
381
|
+
if float(chi_parallel) != 0.0:
|
|
382
|
+
parallel_diffusion_te = chi_parallel * parallel_laplacian_direct_op(
|
|
383
|
+
Te,
|
|
384
|
+
geometry,
|
|
385
|
+
face_bc=temperature_face_bc,
|
|
386
|
+
periodic_axes=periodic_axes,
|
|
387
|
+
)
|
|
388
|
+
|
|
389
|
+
return (
|
|
390
|
+
-(poisson_bracket_te / (rho_star * bmag))
|
|
391
|
+
- parallel_advection_te
|
|
392
|
+
+ (4.0 * Te / (3.0 * bmag))
|
|
393
|
+
* (
|
|
394
|
+
curvature_Pe / density
|
|
395
|
+
+ 2.5 * curvature_temperature
|
|
396
|
+
- curvature_potential
|
|
397
|
+
)
|
|
398
|
+
+ (2.0 * Te / (3.0 * density))
|
|
399
|
+
* (
|
|
400
|
+
0.71 * parallel_current_density - density * parallel_Ve
|
|
401
|
+
)
|
|
402
|
+
+ parallel_diffusion_te
|
|
403
|
+
+ perp_diffusion_te
|
|
404
|
+
)
|
|
405
|
+
|
|
406
|
+
|
|
407
|
+
def _Ti_rhs(
|
|
408
|
+
*,
|
|
409
|
+
Ti: jnp.ndarray,
|
|
410
|
+
density: jnp.ndarray,
|
|
411
|
+
Vi: jnp.ndarray,
|
|
412
|
+
Ve: jnp.ndarray,
|
|
413
|
+
geometry: FciGeometry3D,
|
|
414
|
+
parameters: FciDrbEBRhsParameters,
|
|
415
|
+
curvature_coefficients: jnp.ndarray,
|
|
416
|
+
Ti_stencil: LocalStencil3D,
|
|
417
|
+
density_stencil: LocalStencil3D,
|
|
418
|
+
potential_stencil: LocalStencil3D,
|
|
419
|
+
Pe_stencil: LocalStencil3D,
|
|
420
|
+
current_density_stencil: LocalStencil3D,
|
|
421
|
+
Vi_stencil: LocalStencil3D,
|
|
422
|
+
Ti_conservative_stencil: ConservativeStencil3D | None,
|
|
423
|
+
Ti_face_bc: BoundaryFaceBC3D,
|
|
424
|
+
Ti_cut_wall_geometry: CutWallGeometry3D | None,
|
|
425
|
+
Ti_cut_wall_bc: CutWallBC3D | None,
|
|
426
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
427
|
+
b_floor: float = 1.0e-30,
|
|
428
|
+
jacobian_floor: float = 1.0e-30,
|
|
429
|
+
) -> jnp.ndarray:
|
|
430
|
+
"""Assemble the ion temperature RHS with prebuilt stencils and geometry inputs."""
|
|
431
|
+
|
|
432
|
+
Ti = jnp.asarray(Ti, dtype=jnp.float64)
|
|
433
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
434
|
+
Vi = jnp.asarray(Vi, dtype=jnp.float64)
|
|
435
|
+
Ve = jnp.asarray(Ve, dtype=jnp.float64)
|
|
436
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
437
|
+
tau = jnp.asarray(parameters.tau, dtype=jnp.float64)
|
|
438
|
+
chi_parallel = jnp.asarray(parameters.ion_temperature_chi_parallel, dtype=jnp.float64)
|
|
439
|
+
D_perp = jnp.asarray(parameters.ion_temperature_D_perp, dtype=jnp.float64)
|
|
440
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
441
|
+
|
|
442
|
+
poisson_bracket_Ti = poisson_bracket_op(potential_stencil, Ti_stencil, geometry)
|
|
443
|
+
parallel_advection_Ti = Vi * grad_parallel_op_direct(Ti_stencil, geometry)
|
|
444
|
+
curvature_Pe = curvature_op(
|
|
445
|
+
Pe_stencil,
|
|
446
|
+
geometry,
|
|
447
|
+
curvature_coefficients=curvature_coefficients,
|
|
448
|
+
)
|
|
449
|
+
curvature_Ti = curvature_op(
|
|
450
|
+
Ti_stencil,
|
|
451
|
+
geometry,
|
|
452
|
+
curvature_coefficients=curvature_coefficients,
|
|
453
|
+
)
|
|
454
|
+
curvature_potential = curvature_op(
|
|
455
|
+
potential_stencil,
|
|
456
|
+
geometry,
|
|
457
|
+
curvature_coefficients=curvature_coefficients,
|
|
458
|
+
)
|
|
459
|
+
parallel_current_density = grad_parallel_op_direct(current_density_stencil, geometry)
|
|
460
|
+
parallel_Vi = grad_parallel_op_direct(Vi_stencil, geometry)
|
|
461
|
+
perp_diffusion_Ti = jnp.zeros_like(Ti)
|
|
462
|
+
if float(D_perp) != 0.0:
|
|
463
|
+
if Ti_conservative_stencil is None:
|
|
464
|
+
raise ValueError("Ti_conservative_stencil is required when ion_temperature_D_perp is nonzero")
|
|
465
|
+
perp_diffusion_Ti = D_perp * perp_laplacian_conservative_op(
|
|
466
|
+
Ti_conservative_stencil,
|
|
467
|
+
geometry,
|
|
468
|
+
face_bc=Ti_face_bc,
|
|
469
|
+
cut_wall_geometry=Ti_cut_wall_geometry,
|
|
470
|
+
cut_wall_bc=Ti_cut_wall_bc,
|
|
471
|
+
periodic_axes=periodic_axes,
|
|
472
|
+
b_floor=b_floor,
|
|
473
|
+
jacobian_floor=jacobian_floor,
|
|
474
|
+
)
|
|
475
|
+
parallel_diffusion_Ti = jnp.zeros_like(Ti)
|
|
476
|
+
if float(chi_parallel) != 0.0:
|
|
477
|
+
parallel_diffusion_Ti = chi_parallel * parallel_laplacian_direct_op(
|
|
478
|
+
Ti,
|
|
479
|
+
geometry,
|
|
480
|
+
face_bc=Ti_face_bc,
|
|
481
|
+
periodic_axes=periodic_axes,
|
|
482
|
+
)
|
|
483
|
+
|
|
484
|
+
return (
|
|
485
|
+
-(poisson_bracket_Ti / (rho_star * bmag))
|
|
486
|
+
- parallel_advection_Ti
|
|
487
|
+
+ (4.0 * Ti / (3.0 * bmag))
|
|
488
|
+
* (
|
|
489
|
+
curvature_Pe / density
|
|
490
|
+
- 2.5 * tau * curvature_Ti
|
|
491
|
+
- curvature_potential
|
|
492
|
+
)
|
|
493
|
+
+ (2.0 * Ti / (3.0 * density))
|
|
494
|
+
* (
|
|
495
|
+
parallel_current_density - density * parallel_Vi
|
|
496
|
+
)
|
|
497
|
+
+ parallel_diffusion_Ti
|
|
498
|
+
+ perp_diffusion_Ti
|
|
499
|
+
)
|
|
500
|
+
|
|
501
|
+
|
|
502
|
+
def _Ve_rhs(
|
|
503
|
+
*,
|
|
504
|
+
Ve: jnp.ndarray,
|
|
505
|
+
density: jnp.ndarray,
|
|
506
|
+
Te: jnp.ndarray,
|
|
507
|
+
geometry: FciGeometry3D,
|
|
508
|
+
parameters: FciDrbEBRhsParameters,
|
|
509
|
+
curvature_coefficients: jnp.ndarray,
|
|
510
|
+
Ve_stencil: LocalStencil3D,
|
|
511
|
+
density_stencil: LocalStencil3D,
|
|
512
|
+
potential_stencil: LocalStencil3D,
|
|
513
|
+
Pe_stencil: LocalStencil3D,
|
|
514
|
+
Te_stencil: LocalStencil3D,
|
|
515
|
+
current_density: jnp.ndarray,
|
|
516
|
+
Ve_conservative_stencil: ConservativeStencil3D | None,
|
|
517
|
+
Ve_face_bc: BoundaryFaceBC3D,
|
|
518
|
+
Ve_cut_wall_geometry: CutWallGeometry3D | None,
|
|
519
|
+
Ve_cut_wall_bc: CutWallBC3D | None,
|
|
520
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
521
|
+
b_floor: float = 1.0e-30,
|
|
522
|
+
jacobian_floor: float = 1.0e-30,
|
|
523
|
+
) -> jnp.ndarray:
|
|
524
|
+
"""Assemble the electron velocity RHS with prebuilt stencils and geometry inputs."""
|
|
525
|
+
|
|
526
|
+
Ve = jnp.asarray(Ve, dtype=jnp.float64)
|
|
527
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
528
|
+
Te = jnp.asarray(Te, dtype=jnp.float64)
|
|
529
|
+
current_density = jnp.asarray(current_density, dtype=jnp.float64)
|
|
530
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
531
|
+
mi_over_me = jnp.asarray(parameters.mi_over_me, dtype=jnp.float64)
|
|
532
|
+
Ve_nu = jnp.asarray(parameters.Ve_nu, dtype=jnp.float64)
|
|
533
|
+
Ve_D_perp = jnp.asarray(parameters.Ve_D_perp, dtype=jnp.float64)
|
|
534
|
+
Ve_D_parallel = jnp.asarray(parameters.Ve_D_parallel, dtype=jnp.float64)
|
|
535
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
536
|
+
|
|
537
|
+
poisson_bracket_Ve = poisson_bracket_op(potential_stencil, Ve_stencil, geometry)
|
|
538
|
+
parallel_advection_Ve = Ve * grad_parallel_op_direct(Ve_stencil, geometry)
|
|
539
|
+
parallel_phi = grad_parallel_op_direct(potential_stencil, geometry)
|
|
540
|
+
parallel_Pe = grad_parallel_op_direct(Pe_stencil, geometry)
|
|
541
|
+
parallel_Te = grad_parallel_op_direct(Te_stencil, geometry)
|
|
542
|
+
perp_diffusion_Ve = jnp.zeros_like(Ve)
|
|
543
|
+
if float(Ve_D_perp) != 0.0:
|
|
544
|
+
if Ve_conservative_stencil is None:
|
|
545
|
+
raise ValueError("Ve_conservative_stencil is required when Ve_D_perp is nonzero")
|
|
546
|
+
perp_diffusion_Ve = Ve_D_perp * perp_laplacian_conservative_op(
|
|
547
|
+
Ve_conservative_stencil,
|
|
548
|
+
geometry,
|
|
549
|
+
face_bc=Ve_face_bc,
|
|
550
|
+
cut_wall_geometry=Ve_cut_wall_geometry,
|
|
551
|
+
cut_wall_bc=Ve_cut_wall_bc,
|
|
552
|
+
periodic_axes=periodic_axes,
|
|
553
|
+
b_floor=b_floor,
|
|
554
|
+
jacobian_floor=jacobian_floor,
|
|
555
|
+
)
|
|
556
|
+
parallel_diffusion_Ve = jnp.zeros_like(Ve)
|
|
557
|
+
if float(Ve_D_parallel) != 0.0:
|
|
558
|
+
parallel_diffusion_Ve = Ve_D_parallel * parallel_laplacian_direct_op(
|
|
559
|
+
Ve,
|
|
560
|
+
geometry,
|
|
561
|
+
face_bc=Ve_face_bc,
|
|
562
|
+
periodic_axes=periodic_axes,
|
|
563
|
+
)
|
|
564
|
+
|
|
565
|
+
return (
|
|
566
|
+
-(poisson_bracket_Ve / (rho_star * bmag))
|
|
567
|
+
- parallel_advection_Ve
|
|
568
|
+
+ mi_over_me
|
|
569
|
+
* (
|
|
570
|
+
Ve_nu * current_density
|
|
571
|
+
+ parallel_phi
|
|
572
|
+
- parallel_Pe / jnp.maximum(density, 1.0e-30)
|
|
573
|
+
- 0.71 * parallel_Te
|
|
574
|
+
)
|
|
575
|
+
+ parallel_diffusion_Ve
|
|
576
|
+
+ perp_diffusion_Ve
|
|
577
|
+
)
|
|
578
|
+
|
|
579
|
+
|
|
580
|
+
def _Vi_rhs(
|
|
581
|
+
*,
|
|
582
|
+
Vi: jnp.ndarray,
|
|
583
|
+
density: jnp.ndarray,
|
|
584
|
+
geometry: FciGeometry3D,
|
|
585
|
+
parameters: FciDrbEBRhsParameters,
|
|
586
|
+
curvature_coefficients: jnp.ndarray,
|
|
587
|
+
Vi_stencil: LocalStencil3D,
|
|
588
|
+
density_stencil: LocalStencil3D,
|
|
589
|
+
potential_stencil: LocalStencil3D,
|
|
590
|
+
pressure_stencil: LocalStencil3D,
|
|
591
|
+
Vi_conservative_stencil: ConservativeStencil3D | None,
|
|
592
|
+
Vi_face_bc: BoundaryFaceBC3D,
|
|
593
|
+
Vi_cut_wall_geometry: CutWallGeometry3D | None,
|
|
594
|
+
Vi_cut_wall_bc: CutWallBC3D | None,
|
|
595
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
596
|
+
b_floor: float = 1.0e-30,
|
|
597
|
+
jacobian_floor: float = 1.0e-30,
|
|
598
|
+
) -> jnp.ndarray:
|
|
599
|
+
"""Assemble the ion velocity RHS with prebuilt stencils and geometry inputs."""
|
|
600
|
+
|
|
601
|
+
Vi = jnp.asarray(Vi, dtype=jnp.float64)
|
|
602
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
603
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
604
|
+
Vi_D_perp = jnp.asarray(parameters.Vi_D_perp, dtype=jnp.float64)
|
|
605
|
+
Vi_D_parallel = jnp.asarray(parameters.Vi_D_parallel, dtype=jnp.float64)
|
|
606
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
607
|
+
|
|
608
|
+
poisson_bracket_Vi = poisson_bracket_op(potential_stencil, Vi_stencil, geometry)
|
|
609
|
+
parallel_advection_Vi = Vi * grad_parallel_op_direct(Vi_stencil, geometry)
|
|
610
|
+
parallel_pressure = grad_parallel_op_direct(pressure_stencil, geometry)
|
|
611
|
+
perp_diffusion_Vi = jnp.zeros_like(Vi)
|
|
612
|
+
if float(Vi_D_perp) != 0.0:
|
|
613
|
+
if Vi_conservative_stencil is None:
|
|
614
|
+
raise ValueError("Vi_conservative_stencil is required when Vi_D_perp is nonzero")
|
|
615
|
+
perp_diffusion_Vi = Vi_D_perp * perp_laplacian_conservative_op(
|
|
616
|
+
Vi_conservative_stencil,
|
|
617
|
+
geometry,
|
|
618
|
+
face_bc=Vi_face_bc,
|
|
619
|
+
cut_wall_geometry=Vi_cut_wall_geometry,
|
|
620
|
+
cut_wall_bc=Vi_cut_wall_bc,
|
|
621
|
+
periodic_axes=periodic_axes,
|
|
622
|
+
b_floor=b_floor,
|
|
623
|
+
jacobian_floor=jacobian_floor,
|
|
624
|
+
)
|
|
625
|
+
parallel_diffusion_Vi = jnp.zeros_like(Vi)
|
|
626
|
+
if float(Vi_D_parallel) != 0.0:
|
|
627
|
+
parallel_diffusion_Vi = Vi_D_parallel * parallel_laplacian_direct_op(
|
|
628
|
+
Vi,
|
|
629
|
+
geometry,
|
|
630
|
+
face_bc=Vi_face_bc,
|
|
631
|
+
periodic_axes=periodic_axes,
|
|
632
|
+
)
|
|
633
|
+
|
|
634
|
+
return (
|
|
635
|
+
-(poisson_bracket_Vi / (rho_star * bmag))
|
|
636
|
+
- parallel_advection_Vi
|
|
637
|
+
- parallel_pressure / jnp.maximum(density, 1.0e-30)
|
|
638
|
+
+ parallel_diffusion_Vi
|
|
639
|
+
+ perp_diffusion_Vi
|
|
640
|
+
)
|
|
641
|
+
|
|
642
|
+
|
|
643
|
+
def _vorticity_rhs(
|
|
644
|
+
*,
|
|
645
|
+
vorticity: jnp.ndarray,
|
|
646
|
+
density: jnp.ndarray,
|
|
647
|
+
Vi: jnp.ndarray,
|
|
648
|
+
geometry: FciGeometry3D,
|
|
649
|
+
parameters: FciDrbEBRhsParameters,
|
|
650
|
+
curvature_coefficients: jnp.ndarray,
|
|
651
|
+
vorticity_stencil: LocalStencil3D,
|
|
652
|
+
density_stencil: LocalStencil3D,
|
|
653
|
+
potential_stencil: LocalStencil3D,
|
|
654
|
+
pressure_stencil: LocalStencil3D,
|
|
655
|
+
current_density_stencil: LocalStencil3D,
|
|
656
|
+
vorticity_conservative_stencil: ConservativeStencil3D | None,
|
|
657
|
+
vorticity_face_bc: BoundaryFaceBC3D,
|
|
658
|
+
vorticity_cut_wall_geometry: CutWallGeometry3D | None,
|
|
659
|
+
vorticity_cut_wall_bc: CutWallBC3D | None,
|
|
660
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
661
|
+
b_floor: float = 1.0e-30,
|
|
662
|
+
jacobian_floor: float = 1.0e-30,
|
|
663
|
+
) -> jnp.ndarray:
|
|
664
|
+
"""Assemble the vorticity RHS with prebuilt stencils and geometry inputs."""
|
|
665
|
+
|
|
666
|
+
vorticity = jnp.asarray(vorticity, dtype=jnp.float64)
|
|
667
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
668
|
+
Vi = jnp.asarray(Vi, dtype=jnp.float64)
|
|
669
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
670
|
+
vorticity_D_perp = jnp.asarray(parameters.vorticity_D_perp, dtype=jnp.float64)
|
|
671
|
+
vorticity_D_parallel = jnp.asarray(parameters.vorticity_D_parallel, dtype=jnp.float64)
|
|
672
|
+
bmag = jnp.maximum(jnp.asarray(geometry.cell_bfield.Bmag, dtype=jnp.float64), float(b_floor))
|
|
673
|
+
|
|
674
|
+
poisson_bracket_vorticity = poisson_bracket_op(potential_stencil, vorticity_stencil, geometry)
|
|
675
|
+
parallel_advection_vorticity = Vi * grad_parallel_op_direct(vorticity_stencil, geometry)
|
|
676
|
+
parallel_current_density = grad_parallel_op_direct(current_density_stencil, geometry)
|
|
677
|
+
curvature_pressure = curvature_op(
|
|
678
|
+
pressure_stencil,
|
|
679
|
+
geometry,
|
|
680
|
+
curvature_coefficients=curvature_coefficients,
|
|
681
|
+
)
|
|
682
|
+
perp_diffusion_vorticity = jnp.zeros_like(vorticity)
|
|
683
|
+
if float(vorticity_D_perp) != 0.0:
|
|
684
|
+
if vorticity_conservative_stencil is None:
|
|
685
|
+
raise ValueError("vorticity_conservative_stencil is required when vorticity_D_perp is nonzero")
|
|
686
|
+
perp_diffusion_vorticity = vorticity_D_perp * perp_laplacian_conservative_op(
|
|
687
|
+
vorticity_conservative_stencil,
|
|
688
|
+
geometry,
|
|
689
|
+
face_bc=vorticity_face_bc,
|
|
690
|
+
cut_wall_geometry=vorticity_cut_wall_geometry,
|
|
691
|
+
cut_wall_bc=vorticity_cut_wall_bc,
|
|
692
|
+
periodic_axes=periodic_axes,
|
|
693
|
+
b_floor=b_floor,
|
|
694
|
+
jacobian_floor=jacobian_floor,
|
|
695
|
+
)
|
|
696
|
+
parallel_diffusion_vorticity = jnp.zeros_like(vorticity)
|
|
697
|
+
if float(vorticity_D_parallel) != 0.0:
|
|
698
|
+
parallel_diffusion_vorticity = vorticity_D_parallel * parallel_laplacian_direct_op(
|
|
699
|
+
vorticity,
|
|
700
|
+
geometry,
|
|
701
|
+
face_bc=vorticity_face_bc,
|
|
702
|
+
periodic_axes=periodic_axes,
|
|
703
|
+
)
|
|
704
|
+
|
|
705
|
+
return (
|
|
706
|
+
-(poisson_bracket_vorticity / (rho_star * bmag))
|
|
707
|
+
- parallel_advection_vorticity
|
|
708
|
+
+ (bmag * bmag / jnp.maximum(density, 1.0e-30)) * parallel_current_density
|
|
709
|
+
+ (2.0 * bmag / jnp.maximum(density, 1.0e-30)) * curvature_pressure
|
|
710
|
+
+ parallel_diffusion_vorticity
|
|
711
|
+
+ perp_diffusion_vorticity
|
|
712
|
+
)
|
|
713
|
+
|
|
714
|
+
|
|
715
|
+
def _diffusion_only_rhs(
|
|
716
|
+
*,
|
|
717
|
+
density: jnp.ndarray,
|
|
718
|
+
Te: jnp.ndarray,
|
|
719
|
+
Ti: jnp.ndarray,
|
|
720
|
+
Vi: jnp.ndarray,
|
|
721
|
+
Ve: jnp.ndarray,
|
|
722
|
+
vorticity: jnp.ndarray,
|
|
723
|
+
geometry: FciGeometry3D,
|
|
724
|
+
conservative_stencil_builder: ConservativeStencilBuilder,
|
|
725
|
+
parameters: FciDrbEBRhsParameters,
|
|
726
|
+
density_face_bc: BoundaryFaceBC3D,
|
|
727
|
+
vorticity_face_bc: BoundaryFaceBC3D,
|
|
728
|
+
electron_temperature_face_bc: BoundaryFaceBC3D,
|
|
729
|
+
ion_temperature_face_bc: BoundaryFaceBC3D,
|
|
730
|
+
electron_velocity_parallel_face_bc: BoundaryFaceBC3D,
|
|
731
|
+
ion_velocity_parallel_face_bc: BoundaryFaceBC3D,
|
|
732
|
+
density_cut_wall_geometry: CutWallGeometry3D | None,
|
|
733
|
+
density_cut_wall_bc: CutWallBC3D | None,
|
|
734
|
+
vorticity_cut_wall_geometry: CutWallGeometry3D | None,
|
|
735
|
+
vorticity_cut_wall_bc: CutWallBC3D | None,
|
|
736
|
+
electron_temperature_cut_wall_geometry: CutWallGeometry3D | None,
|
|
737
|
+
electron_temperature_cut_wall_bc: CutWallBC3D | None,
|
|
738
|
+
ion_temperature_cut_wall_geometry: CutWallGeometry3D | None,
|
|
739
|
+
ion_temperature_cut_wall_bc: CutWallBC3D | None,
|
|
740
|
+
electron_velocity_parallel_cut_wall_geometry: CutWallGeometry3D | None,
|
|
741
|
+
electron_velocity_parallel_cut_wall_bc: CutWallBC3D | None,
|
|
742
|
+
ion_velocity_parallel_cut_wall_geometry: CutWallGeometry3D | None,
|
|
743
|
+
ion_velocity_parallel_cut_wall_bc: CutWallBC3D | None,
|
|
744
|
+
periodic_axes: tuple[bool, bool, bool],
|
|
745
|
+
b_floor: float = 1.0e-30,
|
|
746
|
+
jacobian_floor: float = 1.0e-30,
|
|
747
|
+
) -> FciDrbEBState:
|
|
748
|
+
"""Assemble only the explicit field diffusion terms for EB sanity checks."""
|
|
749
|
+
|
|
750
|
+
density = jnp.asarray(density, dtype=jnp.float64)
|
|
751
|
+
Te = jnp.asarray(Te, dtype=jnp.float64)
|
|
752
|
+
Ti = jnp.asarray(Ti, dtype=jnp.float64)
|
|
753
|
+
Vi = jnp.asarray(Vi, dtype=jnp.float64)
|
|
754
|
+
Ve = jnp.asarray(Ve, dtype=jnp.float64)
|
|
755
|
+
vorticity = jnp.asarray(vorticity, dtype=jnp.float64)
|
|
756
|
+
|
|
757
|
+
def _field_diffusion(
|
|
758
|
+
field: jnp.ndarray,
|
|
759
|
+
*,
|
|
760
|
+
perpendicular_coefficient: float,
|
|
761
|
+
parallel_coefficient: float,
|
|
762
|
+
face_bc: BoundaryFaceBC3D,
|
|
763
|
+
cut_wall_geometry: CutWallGeometry3D | None,
|
|
764
|
+
cut_wall_bc: CutWallBC3D | None,
|
|
765
|
+
) -> jnp.ndarray:
|
|
766
|
+
rhs = jnp.zeros_like(field, dtype=jnp.float64)
|
|
767
|
+
if float(perpendicular_coefficient) != 0.0:
|
|
768
|
+
conservative_stencil = conservative_stencil_builder(
|
|
769
|
+
field,
|
|
770
|
+
geometry,
|
|
771
|
+
periodic_axes=periodic_axes,
|
|
772
|
+
face_bc=face_bc,
|
|
773
|
+
)
|
|
774
|
+
rhs = rhs + jnp.asarray(perpendicular_coefficient, dtype=jnp.float64) * perp_laplacian_conservative_op(
|
|
775
|
+
conservative_stencil,
|
|
776
|
+
geometry,
|
|
777
|
+
face_bc=face_bc,
|
|
778
|
+
cut_wall_geometry=cut_wall_geometry,
|
|
779
|
+
cut_wall_bc=cut_wall_bc,
|
|
780
|
+
periodic_axes=periodic_axes,
|
|
781
|
+
b_floor=b_floor,
|
|
782
|
+
jacobian_floor=jacobian_floor,
|
|
783
|
+
)
|
|
784
|
+
if float(parallel_coefficient) != 0.0:
|
|
785
|
+
rhs = rhs + jnp.asarray(parallel_coefficient, dtype=jnp.float64) * parallel_laplacian_direct_op(
|
|
786
|
+
field,
|
|
787
|
+
geometry,
|
|
788
|
+
face_bc=face_bc,
|
|
789
|
+
periodic_axes=periodic_axes,
|
|
790
|
+
)
|
|
791
|
+
return rhs
|
|
792
|
+
|
|
793
|
+
return FciDrbEBState(
|
|
794
|
+
density=_field_diffusion(
|
|
795
|
+
density,
|
|
796
|
+
perpendicular_coefficient=parameters.density_D_perp,
|
|
797
|
+
parallel_coefficient=parameters.density_D_parallel,
|
|
798
|
+
face_bc=density_face_bc,
|
|
799
|
+
cut_wall_geometry=density_cut_wall_geometry,
|
|
800
|
+
cut_wall_bc=density_cut_wall_bc,
|
|
801
|
+
),
|
|
802
|
+
phi=jnp.zeros_like(density, dtype=jnp.float64),
|
|
803
|
+
Te=_field_diffusion(
|
|
804
|
+
Te,
|
|
805
|
+
perpendicular_coefficient=parameters.electron_temperature_D_perp,
|
|
806
|
+
parallel_coefficient=parameters.electron_temperature_chi_parallel,
|
|
807
|
+
face_bc=electron_temperature_face_bc,
|
|
808
|
+
cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
809
|
+
cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
810
|
+
),
|
|
811
|
+
Ti=_field_diffusion(
|
|
812
|
+
Ti,
|
|
813
|
+
perpendicular_coefficient=parameters.ion_temperature_D_perp,
|
|
814
|
+
parallel_coefficient=parameters.ion_temperature_chi_parallel,
|
|
815
|
+
face_bc=ion_temperature_face_bc,
|
|
816
|
+
cut_wall_geometry=ion_temperature_cut_wall_geometry,
|
|
817
|
+
cut_wall_bc=ion_temperature_cut_wall_bc,
|
|
818
|
+
),
|
|
819
|
+
Vi=_field_diffusion(
|
|
820
|
+
Vi,
|
|
821
|
+
perpendicular_coefficient=parameters.Vi_D_perp,
|
|
822
|
+
parallel_coefficient=parameters.Vi_D_parallel,
|
|
823
|
+
face_bc=ion_velocity_parallel_face_bc,
|
|
824
|
+
cut_wall_geometry=ion_velocity_parallel_cut_wall_geometry,
|
|
825
|
+
cut_wall_bc=ion_velocity_parallel_cut_wall_bc,
|
|
826
|
+
),
|
|
827
|
+
Ve=_field_diffusion(
|
|
828
|
+
Ve,
|
|
829
|
+
perpendicular_coefficient=parameters.Ve_D_perp,
|
|
830
|
+
parallel_coefficient=parameters.Ve_D_parallel,
|
|
831
|
+
face_bc=electron_velocity_parallel_face_bc,
|
|
832
|
+
cut_wall_geometry=electron_velocity_parallel_cut_wall_geometry,
|
|
833
|
+
cut_wall_bc=electron_velocity_parallel_cut_wall_bc,
|
|
834
|
+
),
|
|
835
|
+
vorticity=_field_diffusion(
|
|
836
|
+
vorticity,
|
|
837
|
+
perpendicular_coefficient=parameters.vorticity_D_perp,
|
|
838
|
+
parallel_coefficient=parameters.vorticity_D_parallel,
|
|
839
|
+
face_bc=vorticity_face_bc,
|
|
840
|
+
cut_wall_geometry=vorticity_cut_wall_geometry,
|
|
841
|
+
cut_wall_bc=vorticity_cut_wall_bc,
|
|
842
|
+
),
|
|
843
|
+
)
|
|
844
|
+
|
|
845
|
+
|
|
846
|
+
def compute_fci_drb_eb_rhs(
|
|
847
|
+
state: FciDrbEBState,
|
|
848
|
+
*,
|
|
849
|
+
geometry: FciGeometry3D,
|
|
850
|
+
stencil_builder: LocalStencilBuilder = build_local_stencil_from_field,
|
|
851
|
+
conservative_stencil_builder: ConservativeStencilBuilder = build_conservative_stencil_from_field,
|
|
852
|
+
parameters: FciDrbEBRhsParameters = FciDrbEBRhsParameters(),
|
|
853
|
+
curvature_coefficients: jnp.ndarray,
|
|
854
|
+
density_face_bc: BoundaryFaceBC3D,
|
|
855
|
+
potential_face_bc: BoundaryFaceBC3D,
|
|
856
|
+
vorticity_face_bc: BoundaryFaceBC3D,
|
|
857
|
+
electron_temperature_face_bc: BoundaryFaceBC3D,
|
|
858
|
+
electron_velocity_parallel_face_bc: BoundaryFaceBC3D,
|
|
859
|
+
ion_temperature_face_bc: BoundaryFaceBC3D | None = None,
|
|
860
|
+
ion_velocity_parallel_face_bc: BoundaryFaceBC3D | None = None,
|
|
861
|
+
density_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
862
|
+
density_cut_wall_bc: CutWallBC3D | None = None,
|
|
863
|
+
potential_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
864
|
+
potential_cut_wall_bc: CutWallBC3D | None = None,
|
|
865
|
+
vorticity_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
866
|
+
vorticity_cut_wall_bc: CutWallBC3D | None = None,
|
|
867
|
+
electron_temperature_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
868
|
+
electron_temperature_cut_wall_bc: CutWallBC3D | None = None,
|
|
869
|
+
ion_temperature_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
870
|
+
ion_temperature_cut_wall_bc: CutWallBC3D | None = None,
|
|
871
|
+
electron_velocity_parallel_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
872
|
+
electron_velocity_parallel_cut_wall_bc: CutWallBC3D | None = None,
|
|
873
|
+
ion_velocity_parallel_cut_wall_geometry: CutWallGeometry3D | None = None,
|
|
874
|
+
ion_velocity_parallel_cut_wall_bc: CutWallBC3D | None = None,
|
|
875
|
+
periodic_axes: tuple[bool, bool, bool] = (False, True, True),
|
|
876
|
+
diffusion_only: bool = False,
|
|
877
|
+
density_source: jax.Array | None = None,
|
|
878
|
+
electron_temperature_source: jax.Array | None = None,
|
|
879
|
+
) -> FciDrbEBRhsResult:
|
|
880
|
+
"""Assemble the electrostatic Boussinesq DRB RHS.
|
|
881
|
+
|
|
882
|
+
Optional density and electron-temperature source terms are added only when
|
|
883
|
+
``diffusion_only`` is false.
|
|
884
|
+
"""
|
|
885
|
+
|
|
886
|
+
density = jnp.asarray(state.density, dtype=jnp.float64)
|
|
887
|
+
phi_state = jnp.asarray(state.phi, dtype=jnp.float64)
|
|
888
|
+
vorticity = jnp.asarray(state.vorticity, dtype=jnp.float64)
|
|
889
|
+
Te = jnp.asarray(state.Te, dtype=jnp.float64)
|
|
890
|
+
Ti = jnp.asarray(state.Ti, dtype=jnp.float64)
|
|
891
|
+
Vi = jnp.asarray(state.Vi, dtype=jnp.float64)
|
|
892
|
+
Ve = jnp.asarray(state.Ve, dtype=jnp.float64)
|
|
893
|
+
rho_star = jnp.asarray(parameters.rho_star, dtype=jnp.float64)
|
|
894
|
+
ion_temperature_face_bc = (
|
|
895
|
+
electron_temperature_face_bc
|
|
896
|
+
if ion_temperature_face_bc is None
|
|
897
|
+
else ion_temperature_face_bc
|
|
898
|
+
)
|
|
899
|
+
ion_temperature_cut_wall_geometry = (
|
|
900
|
+
electron_temperature_cut_wall_geometry
|
|
901
|
+
if ion_temperature_cut_wall_geometry is None
|
|
902
|
+
else ion_temperature_cut_wall_geometry
|
|
903
|
+
)
|
|
904
|
+
ion_temperature_cut_wall_bc = (
|
|
905
|
+
electron_temperature_cut_wall_bc
|
|
906
|
+
if ion_temperature_cut_wall_bc is None
|
|
907
|
+
else ion_temperature_cut_wall_bc
|
|
908
|
+
)
|
|
909
|
+
ion_velocity_parallel_face_bc = (
|
|
910
|
+
electron_velocity_parallel_face_bc
|
|
911
|
+
if ion_velocity_parallel_face_bc is None
|
|
912
|
+
else ion_velocity_parallel_face_bc
|
|
913
|
+
)
|
|
914
|
+
ion_velocity_parallel_cut_wall_geometry = (
|
|
915
|
+
electron_velocity_parallel_cut_wall_geometry
|
|
916
|
+
if ion_velocity_parallel_cut_wall_geometry is None
|
|
917
|
+
else ion_velocity_parallel_cut_wall_geometry
|
|
918
|
+
)
|
|
919
|
+
ion_velocity_parallel_cut_wall_bc = (
|
|
920
|
+
electron_velocity_parallel_cut_wall_bc
|
|
921
|
+
if ion_velocity_parallel_cut_wall_bc is None
|
|
922
|
+
else ion_velocity_parallel_cut_wall_bc
|
|
923
|
+
)
|
|
924
|
+
# These coefficients are Python scalars in the current simulation path, so we can
|
|
925
|
+
# skip zero-diffusion branches eagerly instead of building Laplacians that multiply away.
|
|
926
|
+
density_has_perp_diffusion = float(parameters.density_D_perp) != 0.0
|
|
927
|
+
temperature_has_perp_diffusion = float(parameters.electron_temperature_D_perp) != 0.0
|
|
928
|
+
ti_has_perp_diffusion = float(parameters.ion_temperature_D_perp) != 0.0
|
|
929
|
+
ve_has_perp_diffusion = float(parameters.Ve_D_perp) != 0.0
|
|
930
|
+
vi_has_perp_diffusion = float(parameters.Vi_D_perp) != 0.0
|
|
931
|
+
vorticity_has_perp_diffusion = float(parameters.vorticity_D_perp) != 0.0
|
|
932
|
+
|
|
933
|
+
if bool(diffusion_only):
|
|
934
|
+
rhs = _diffusion_only_rhs(
|
|
935
|
+
density=density,
|
|
936
|
+
Te=Te,
|
|
937
|
+
Ti=Ti,
|
|
938
|
+
Vi=Vi,
|
|
939
|
+
Ve=Ve,
|
|
940
|
+
vorticity=vorticity,
|
|
941
|
+
geometry=geometry,
|
|
942
|
+
conservative_stencil_builder=conservative_stencil_builder,
|
|
943
|
+
parameters=parameters,
|
|
944
|
+
density_face_bc=density_face_bc,
|
|
945
|
+
vorticity_face_bc=vorticity_face_bc,
|
|
946
|
+
electron_temperature_face_bc=electron_temperature_face_bc,
|
|
947
|
+
ion_temperature_face_bc=ion_temperature_face_bc,
|
|
948
|
+
electron_velocity_parallel_face_bc=electron_velocity_parallel_face_bc,
|
|
949
|
+
ion_velocity_parallel_face_bc=ion_velocity_parallel_face_bc,
|
|
950
|
+
density_cut_wall_geometry=density_cut_wall_geometry,
|
|
951
|
+
density_cut_wall_bc=density_cut_wall_bc,
|
|
952
|
+
vorticity_cut_wall_geometry=vorticity_cut_wall_geometry,
|
|
953
|
+
vorticity_cut_wall_bc=vorticity_cut_wall_bc,
|
|
954
|
+
electron_temperature_cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
955
|
+
electron_temperature_cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
956
|
+
ion_temperature_cut_wall_geometry=ion_temperature_cut_wall_geometry,
|
|
957
|
+
ion_temperature_cut_wall_bc=ion_temperature_cut_wall_bc,
|
|
958
|
+
electron_velocity_parallel_cut_wall_geometry=electron_velocity_parallel_cut_wall_geometry,
|
|
959
|
+
electron_velocity_parallel_cut_wall_bc=electron_velocity_parallel_cut_wall_bc,
|
|
960
|
+
ion_velocity_parallel_cut_wall_geometry=ion_velocity_parallel_cut_wall_geometry,
|
|
961
|
+
ion_velocity_parallel_cut_wall_bc=ion_velocity_parallel_cut_wall_bc,
|
|
962
|
+
periodic_axes=periodic_axes,
|
|
963
|
+
)
|
|
964
|
+
return FciDrbEBRhsResult(
|
|
965
|
+
rhs=rhs,
|
|
966
|
+
potential=phi_state,
|
|
967
|
+
potential_residual_l2=jnp.asarray(0.0, dtype=jnp.float64),
|
|
968
|
+
)
|
|
969
|
+
|
|
970
|
+
density_stencil = stencil_builder(
|
|
971
|
+
density,
|
|
972
|
+
geometry,
|
|
973
|
+
periodic_axes=periodic_axes,
|
|
974
|
+
face_bc=density_face_bc,
|
|
975
|
+
cut_wall_geometry=density_cut_wall_geometry,
|
|
976
|
+
cut_wall_bc=density_cut_wall_bc,
|
|
977
|
+
)
|
|
978
|
+
Pe = density * Te
|
|
979
|
+
Pe_stencil = stencil_builder(
|
|
980
|
+
Pe,
|
|
981
|
+
geometry,
|
|
982
|
+
periodic_axes=periodic_axes,
|
|
983
|
+
face_bc=electron_temperature_face_bc,
|
|
984
|
+
cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
985
|
+
cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
986
|
+
)
|
|
987
|
+
Ve_stencil = stencil_builder(
|
|
988
|
+
Ve,
|
|
989
|
+
geometry,
|
|
990
|
+
periodic_axes=periodic_axes,
|
|
991
|
+
face_bc=electron_velocity_parallel_face_bc,
|
|
992
|
+
cut_wall_geometry=electron_velocity_parallel_cut_wall_geometry,
|
|
993
|
+
cut_wall_bc=electron_velocity_parallel_cut_wall_bc,
|
|
994
|
+
)
|
|
995
|
+
Vi_stencil = stencil_builder(
|
|
996
|
+
Vi,
|
|
997
|
+
geometry,
|
|
998
|
+
periodic_axes=periodic_axes,
|
|
999
|
+
face_bc=ion_velocity_parallel_face_bc,
|
|
1000
|
+
cut_wall_geometry=ion_velocity_parallel_cut_wall_geometry,
|
|
1001
|
+
cut_wall_bc=ion_velocity_parallel_cut_wall_bc,
|
|
1002
|
+
)
|
|
1003
|
+
Vi_conservative_stencil = (
|
|
1004
|
+
conservative_stencil_builder(
|
|
1005
|
+
Vi,
|
|
1006
|
+
geometry,
|
|
1007
|
+
periodic_axes=periodic_axes,
|
|
1008
|
+
face_bc=ion_velocity_parallel_face_bc,
|
|
1009
|
+
)
|
|
1010
|
+
if vi_has_perp_diffusion
|
|
1011
|
+
else None
|
|
1012
|
+
)
|
|
1013
|
+
temperature_stencil = stencil_builder(
|
|
1014
|
+
Te,
|
|
1015
|
+
geometry,
|
|
1016
|
+
periodic_axes=periodic_axes,
|
|
1017
|
+
face_bc=electron_temperature_face_bc,
|
|
1018
|
+
cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
1019
|
+
cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
1020
|
+
)
|
|
1021
|
+
current_density = density * (Vi - Ve)
|
|
1022
|
+
current_density_stencil = stencil_builder(
|
|
1023
|
+
current_density,
|
|
1024
|
+
geometry,
|
|
1025
|
+
periodic_axes=periodic_axes,
|
|
1026
|
+
face_bc=electron_velocity_parallel_face_bc,
|
|
1027
|
+
cut_wall_geometry=electron_velocity_parallel_cut_wall_geometry,
|
|
1028
|
+
cut_wall_bc=electron_velocity_parallel_cut_wall_bc,
|
|
1029
|
+
)
|
|
1030
|
+
temperature_conservative_stencil = (
|
|
1031
|
+
conservative_stencil_builder(
|
|
1032
|
+
Te,
|
|
1033
|
+
geometry,
|
|
1034
|
+
periodic_axes=periodic_axes,
|
|
1035
|
+
face_bc=electron_temperature_face_bc,
|
|
1036
|
+
)
|
|
1037
|
+
if temperature_has_perp_diffusion
|
|
1038
|
+
else None
|
|
1039
|
+
)
|
|
1040
|
+
Ti_stencil = stencil_builder(
|
|
1041
|
+
Ti,
|
|
1042
|
+
geometry,
|
|
1043
|
+
periodic_axes=periodic_axes,
|
|
1044
|
+
face_bc=ion_temperature_face_bc,
|
|
1045
|
+
cut_wall_geometry=ion_temperature_cut_wall_geometry,
|
|
1046
|
+
cut_wall_bc=ion_temperature_cut_wall_bc,
|
|
1047
|
+
)
|
|
1048
|
+
pressure = Pe + parameters.tau * (density * Ti)
|
|
1049
|
+
pressure_stencil = stencil_builder(
|
|
1050
|
+
pressure,
|
|
1051
|
+
geometry,
|
|
1052
|
+
periodic_axes=periodic_axes,
|
|
1053
|
+
face_bc=electron_temperature_face_bc,
|
|
1054
|
+
cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
1055
|
+
cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
1056
|
+
)
|
|
1057
|
+
Ti_conservative_stencil = (
|
|
1058
|
+
conservative_stencil_builder(
|
|
1059
|
+
Ti,
|
|
1060
|
+
geometry,
|
|
1061
|
+
periodic_axes=periodic_axes,
|
|
1062
|
+
face_bc=ion_temperature_face_bc,
|
|
1063
|
+
)
|
|
1064
|
+
if ti_has_perp_diffusion
|
|
1065
|
+
else None
|
|
1066
|
+
)
|
|
1067
|
+
potential = phi_state
|
|
1068
|
+
potential_residual_l2 = jnp.asarray(0.0, dtype=jnp.float64)
|
|
1069
|
+
potential_stencil = stencil_builder(
|
|
1070
|
+
potential,
|
|
1071
|
+
geometry,
|
|
1072
|
+
periodic_axes=periodic_axes,
|
|
1073
|
+
face_bc=potential_face_bc,
|
|
1074
|
+
cut_wall_geometry=potential_cut_wall_geometry,
|
|
1075
|
+
cut_wall_bc=potential_cut_wall_bc,
|
|
1076
|
+
)
|
|
1077
|
+
vorticity_stencil = stencil_builder(
|
|
1078
|
+
vorticity,
|
|
1079
|
+
geometry,
|
|
1080
|
+
periodic_axes=periodic_axes,
|
|
1081
|
+
face_bc=vorticity_face_bc,
|
|
1082
|
+
cut_wall_geometry=vorticity_cut_wall_geometry,
|
|
1083
|
+
cut_wall_bc=vorticity_cut_wall_bc,
|
|
1084
|
+
)
|
|
1085
|
+
Ve_conservative_stencil = (
|
|
1086
|
+
conservative_stencil_builder(
|
|
1087
|
+
Ve,
|
|
1088
|
+
geometry,
|
|
1089
|
+
periodic_axes=periodic_axes,
|
|
1090
|
+
face_bc=electron_velocity_parallel_face_bc,
|
|
1091
|
+
)
|
|
1092
|
+
if ve_has_perp_diffusion
|
|
1093
|
+
else None
|
|
1094
|
+
)
|
|
1095
|
+
density_conservative_stencil = (
|
|
1096
|
+
conservative_stencil_builder(
|
|
1097
|
+
density,
|
|
1098
|
+
geometry,
|
|
1099
|
+
periodic_axes=periodic_axes,
|
|
1100
|
+
face_bc=density_face_bc,
|
|
1101
|
+
)
|
|
1102
|
+
if density_has_perp_diffusion
|
|
1103
|
+
else None
|
|
1104
|
+
)
|
|
1105
|
+
vorticity_conservative_stencil = (
|
|
1106
|
+
conservative_stencil_builder(
|
|
1107
|
+
vorticity,
|
|
1108
|
+
geometry,
|
|
1109
|
+
periodic_axes=periodic_axes,
|
|
1110
|
+
face_bc=vorticity_face_bc,
|
|
1111
|
+
)
|
|
1112
|
+
if vorticity_has_perp_diffusion
|
|
1113
|
+
else None
|
|
1114
|
+
)
|
|
1115
|
+
|
|
1116
|
+
density_rhs = _density_rhs(
|
|
1117
|
+
density=density,
|
|
1118
|
+
geometry=geometry,
|
|
1119
|
+
parameters=parameters,
|
|
1120
|
+
curvature_coefficients=curvature_coefficients,
|
|
1121
|
+
density_stencil=density_stencil,
|
|
1122
|
+
potential_stencil=potential_stencil,
|
|
1123
|
+
Pe_stencil=Pe_stencil,
|
|
1124
|
+
Ve_stencil=Ve_stencil,
|
|
1125
|
+
density_conservative_stencil=density_conservative_stencil,
|
|
1126
|
+
density_face_bc=density_face_bc,
|
|
1127
|
+
density_cut_wall_geometry=density_cut_wall_geometry,
|
|
1128
|
+
density_cut_wall_bc=density_cut_wall_bc,
|
|
1129
|
+
periodic_axes=periodic_axes,
|
|
1130
|
+
)
|
|
1131
|
+
if density_source is not None:
|
|
1132
|
+
density_rhs = density_rhs + jnp.asarray(density_source, dtype=jnp.float64)
|
|
1133
|
+
Te_rhs = _Te_rhs(
|
|
1134
|
+
Te=Te,
|
|
1135
|
+
density=density,
|
|
1136
|
+
Vi=Vi,
|
|
1137
|
+
Ve=Ve,
|
|
1138
|
+
geometry=geometry,
|
|
1139
|
+
parameters=parameters,
|
|
1140
|
+
curvature_coefficients=curvature_coefficients,
|
|
1141
|
+
temperature_stencil=temperature_stencil,
|
|
1142
|
+
density_stencil=density_stencil,
|
|
1143
|
+
potential_stencil=potential_stencil,
|
|
1144
|
+
Pe_stencil=Pe_stencil,
|
|
1145
|
+
current_density_stencil=current_density_stencil,
|
|
1146
|
+
Ve_stencil=Ve_stencil,
|
|
1147
|
+
temperature_conservative_stencil=temperature_conservative_stencil,
|
|
1148
|
+
temperature_face_bc=electron_temperature_face_bc,
|
|
1149
|
+
temperature_cut_wall_geometry=electron_temperature_cut_wall_geometry,
|
|
1150
|
+
temperature_cut_wall_bc=electron_temperature_cut_wall_bc,
|
|
1151
|
+
periodic_axes=periodic_axes,
|
|
1152
|
+
)
|
|
1153
|
+
if electron_temperature_source is not None:
|
|
1154
|
+
Te_rhs = Te_rhs + jnp.asarray(electron_temperature_source, dtype=jnp.float64)
|
|
1155
|
+
Ti_rhs = _Ti_rhs(
|
|
1156
|
+
Ti=Ti,
|
|
1157
|
+
density=density,
|
|
1158
|
+
Vi=Vi,
|
|
1159
|
+
Ve=Ve,
|
|
1160
|
+
geometry=geometry,
|
|
1161
|
+
parameters=parameters,
|
|
1162
|
+
curvature_coefficients=curvature_coefficients,
|
|
1163
|
+
Ti_stencil=Ti_stencil,
|
|
1164
|
+
density_stencil=density_stencil,
|
|
1165
|
+
potential_stencil=potential_stencil,
|
|
1166
|
+
Pe_stencil=Pe_stencil,
|
|
1167
|
+
current_density_stencil=current_density_stencil,
|
|
1168
|
+
Vi_stencil=Vi_stencil,
|
|
1169
|
+
Ti_conservative_stencil=Ti_conservative_stencil,
|
|
1170
|
+
Ti_face_bc=ion_temperature_face_bc,
|
|
1171
|
+
Ti_cut_wall_geometry=ion_temperature_cut_wall_geometry,
|
|
1172
|
+
Ti_cut_wall_bc=ion_temperature_cut_wall_bc,
|
|
1173
|
+
periodic_axes=periodic_axes,
|
|
1174
|
+
)
|
|
1175
|
+
Vi_rhs = _Vi_rhs(
|
|
1176
|
+
Vi=Vi,
|
|
1177
|
+
density=density,
|
|
1178
|
+
geometry=geometry,
|
|
1179
|
+
parameters=parameters,
|
|
1180
|
+
curvature_coefficients=curvature_coefficients,
|
|
1181
|
+
Vi_stencil=Vi_stencil,
|
|
1182
|
+
density_stencil=density_stencil,
|
|
1183
|
+
potential_stencil=potential_stencil,
|
|
1184
|
+
pressure_stencil=pressure_stencil,
|
|
1185
|
+
Vi_conservative_stencil=Vi_conservative_stencil,
|
|
1186
|
+
Vi_face_bc=ion_velocity_parallel_face_bc,
|
|
1187
|
+
Vi_cut_wall_geometry=ion_velocity_parallel_cut_wall_geometry,
|
|
1188
|
+
Vi_cut_wall_bc=ion_velocity_parallel_cut_wall_bc,
|
|
1189
|
+
periodic_axes=periodic_axes,
|
|
1190
|
+
)
|
|
1191
|
+
vorticity_rhs = _vorticity_rhs(
|
|
1192
|
+
vorticity=vorticity,
|
|
1193
|
+
density=density,
|
|
1194
|
+
Vi=Vi,
|
|
1195
|
+
geometry=geometry,
|
|
1196
|
+
parameters=parameters,
|
|
1197
|
+
curvature_coefficients=curvature_coefficients,
|
|
1198
|
+
vorticity_stencil=vorticity_stencil,
|
|
1199
|
+
density_stencil=density_stencil,
|
|
1200
|
+
potential_stencil=potential_stencil,
|
|
1201
|
+
pressure_stencil=pressure_stencil,
|
|
1202
|
+
current_density_stencil=current_density_stencil,
|
|
1203
|
+
vorticity_conservative_stencil=vorticity_conservative_stencil,
|
|
1204
|
+
vorticity_face_bc=vorticity_face_bc,
|
|
1205
|
+
vorticity_cut_wall_geometry=vorticity_cut_wall_geometry,
|
|
1206
|
+
vorticity_cut_wall_bc=vorticity_cut_wall_bc,
|
|
1207
|
+
periodic_axes=periodic_axes,
|
|
1208
|
+
)
|
|
1209
|
+
Ve_rhs = _Ve_rhs(
|
|
1210
|
+
Ve=Ve,
|
|
1211
|
+
density=density,
|
|
1212
|
+
Te=Te,
|
|
1213
|
+
geometry=geometry,
|
|
1214
|
+
parameters=parameters,
|
|
1215
|
+
curvature_coefficients=curvature_coefficients,
|
|
1216
|
+
Ve_stencil=Ve_stencil,
|
|
1217
|
+
density_stencil=density_stencil,
|
|
1218
|
+
potential_stencil=potential_stencil,
|
|
1219
|
+
Pe_stencil=Pe_stencil,
|
|
1220
|
+
Te_stencil=temperature_stencil,
|
|
1221
|
+
current_density=current_density,
|
|
1222
|
+
Ve_conservative_stencil=Ve_conservative_stencil,
|
|
1223
|
+
Ve_face_bc=electron_velocity_parallel_face_bc,
|
|
1224
|
+
Ve_cut_wall_geometry=electron_velocity_parallel_cut_wall_geometry,
|
|
1225
|
+
Ve_cut_wall_bc=electron_velocity_parallel_cut_wall_bc,
|
|
1226
|
+
periodic_axes=periodic_axes,
|
|
1227
|
+
)
|
|
1228
|
+
|
|
1229
|
+
rhs = FciDrbEBState(
|
|
1230
|
+
density=density_rhs,
|
|
1231
|
+
phi=phi_state,
|
|
1232
|
+
Te=Te_rhs,
|
|
1233
|
+
Ti=Ti_rhs,
|
|
1234
|
+
Vi=Vi_rhs,
|
|
1235
|
+
Ve=Ve_rhs,
|
|
1236
|
+
vorticity=vorticity_rhs,
|
|
1237
|
+
)
|
|
1238
|
+
|
|
1239
|
+
return FciDrbEBRhsResult(
|
|
1240
|
+
rhs=rhs,
|
|
1241
|
+
potential=potential,
|
|
1242
|
+
potential_residual_l2=potential_residual_l2,
|
|
1243
|
+
)
|