desdeo 1.2__py3-none-any.whl → 2.1.0__py3-none-any.whl

desdeo/tools/utils.py

@@ -0,0 +1,388 @@
+"""General utilities related to solvers."""
+
+import shutil
+from collections.abc import Callable
+
+import numpy as np
+import polars as pl
+
+from desdeo.problem import (
+    ObjectiveTypeEnum,
+    Problem,
+    TensorVariable,
+    VariableDimensionEnum,
+    VariableDomainTypeEnum,
+    numpy_array_to_objective_dict,
+    variable_dimension_enumerate,
+)
+from desdeo.tools.generics import BaseSolver
+from desdeo.tools.gurobipy_solver_interfaces import GurobipySolver, PersistentGurobipySolver
+from desdeo.tools.ng_solver_interfaces import NevergradGenericOptions, NevergradGenericSolver
+from desdeo.tools.proximal_solver import ProximalSolver
+from desdeo.tools.pyomo_solver_interfaces import (
+    BonminOptions,
+    CbcOptions,
+    IpoptOptions,
+    PyomoBonminSolver,
+    PyomoCBCSolver,
+    PyomoGurobiSolver,
+    PyomoIpoptSolver,
+)
+from desdeo.tools.scipy_solver_interfaces import (
+    ScipyDeOptions,
+    ScipyDeSolver,
+    ScipyMinimizeOptions,
+    ScipyMinimizeSolver,
+)
+
+available_solvers = {
+    "scipy_minimize": {
+        "constructor": ScipyMinimizeSolver,
+        "options": ScipyMinimizeOptions,
+    },
+    "scipy_de": {
+        "constructor": ScipyDeSolver,
+        "options": ScipyDeOptions,
+    },
+    "proximal": {
+        "constructor": ProximalSolver,
+        "options": None,
+    },
+    "nevergrad": {"constructor": NevergradGenericSolver, "options": NevergradGenericOptions},
+    "pyomo_bonmin": {
+        "constructor": PyomoBonminSolver,
+        "options": BonminOptions,
+    },
+    "pyomo_cbc": {
+        "constructor": PyomoCBCSolver,
+        "options": CbcOptions,
+    },
+    "pyomo_ipopt": {
+        "constructor": PyomoIpoptSolver,
+        "options": IpoptOptions,
+    },
+    "pyomo_gurobi": {"constructor": PyomoGurobiSolver, "options": None},
+    "gurobipy": {
+        "constructor": GurobipySolver,
+        "options": None,
+    },
+    "gurobipy_persistent": {
+        "constructor": PersistentGurobipySolver,
+        "options": None,
+    },
+}
+
+
+def find_compatible_solvers(problem: Problem) -> list[BaseSolver]:
+    """Find solvers that are compatible with the problem that is being solved.
+
+    Args:
+        problem (Problem): The problem being solved.
+
+    Returns:
+        list[BaseSolver]: A list of solvers that are compatible with the problem.
+    """
+    solvers = []
+
+    # check for variable dimensions
+    # This could be also done by just checking if all the variables are Variables instead of TensorVariables
+    # as solvers at the moment do not care about the difference between 1D tensors and higher dimensions.
+    # This is because the solvers that utilize the polars evaluator (the only evaluator that works with
+    # scalars and 1D tensors and not higher dimensions) only support scalar valued variables at the moment.
+    var_dim = variable_dimension_enumerate(problem)
+
+    # check if problem has only data-based objectives
+    all_data_based = all(objective.objective_type == ObjectiveTypeEnum.data_based for objective in problem.objectives)
+
+    # check if problem has a discrete definition
+    has_discrete = problem.discrete_representation is not None
+
+    # check if problem is data-based
+    if all_data_based and has_discrete and var_dim == VariableDimensionEnum.scalar:
+        # problem has only data-based objectives and a discrete definition is available
+        # return ProximalSolver as it is the only solver for data-based problems at the moment
+        return [available_solvers["proximal"]["constructor"]]
+
+    # check if the problem is differentiable and if it is mixed integer
+    if (
+        problem.is_twice_differentiable
+        and shutil.which("bonmin")
+        and problem.variable_domain
+        in [
+            VariableDomainTypeEnum.integer,
+            VariableDomainTypeEnum.mixed,
+        ]
+    ):
+        solvers.append(available_solvers["pyomo_bonmin"]["constructor"])  # bonmin has to be installed
+
+    # check if the problem is differentiable and continuous
+    if (
+        problem.is_twice_differentiable
+        and shutil.which("ipopt")
+        and problem.variable_domain in [VariableDomainTypeEnum.continuous]
+    ):
+        solvers.append(available_solvers["pyomo_ipopt"]["constructor"])  # ipopt has to be installed
+
+    # check if the problem is linear
+    if problem.is_linear:
+        solvers.append(available_solvers["gurobipy"]["constructor"])
+    if problem.is_linear and shutil.which("gurobi"):
+        solvers.append(available_solvers["pyomo_gurobi"]["constructor"])  # gurobi has to be installed
+    if problem.is_linear and shutil.which("cbc"):
+        solvers.append(available_solvers["pyomo_cbc"]["constructor"])
+
+    # check if problem's variables are all scalars
+    if var_dim == VariableDimensionEnum.scalar:
+        # nevergrad and scipy solvers work with all(?) problems with only scalar valued variables
+        solvers.append(available_solvers["nevergrad"]["constructor"])
+        solvers.append(available_solvers["scipy_minimize"]["constructor"])
+        solvers.append(available_solvers["scipy_de"]["constructor"])
+    return solvers
+
+
+def guess_best_solver(problem: Problem) -> BaseSolver:  # noqa: PLR0911
+    """Given a problem, tries to guess the best solver to handle it.
+
+    Args:
+        problem (Problem): the problem being solved.
+
+    Note:
+        Needs to be extended as new solvers are implemented.
+
+    Returns:
+        BaseSolver: a solver class that uses BaseSolver as a base class
+    """
+    # needs to be extended as new solver are implemented
+
+    # check if problem has only data-based objectives
+    all_data_based = all(objective.objective_type == ObjectiveTypeEnum.data_based for objective in problem.objectives)
+
+    # check if problem has a discrete definition
+    has_discrete = problem.discrete_representation is not None
+
+    # TODO: when figured out what solver is best for problems with tensor variables: it seems that e.g. the
+    # forest problems don't work with pyomo_cbc. So VERY MUCH a quick fix to get something working, as those types of
+    # problems have been ok with gurobipy.
+
+    # if True in [isinstance(variable, TensorVariable) for variable in problem.variables]:
+    if False:
+        if problem.is_linear and shutil.which("cbc"):
+            return available_solvers["pyomo_cbc"]["constructor"]
+
+        if problem.is_linear:
+            return available_solvers["gurobipy"]["constructor"]
+
+        # check if the problem is differentiable and if it is mixed integer
+        if (
+            problem.is_twice_differentiable
+            and shutil.which("bonmin")
+            and problem.variable_domain
+            in [
+                VariableDomainTypeEnum.integer,
+                VariableDomainTypeEnum.mixed,
+            ]
+        ):
+            return available_solvers["pyomo_bonmin"]["constructor"]
+
+        # check if the problem is differentiable and continuous
+        if (
+            problem.is_twice_differentiable
+            and shutil.which("ipopt")
+            and problem.variable_domain in [VariableDomainTypeEnum.continuous]
+        ):
+            return available_solvers["pyomo_ipopt"]["constructor"]
+
+    if all_data_based and has_discrete:
+        # problem has only data-based objectives and a discrete definition is available
+        # guess proximal solver is best
+        return available_solvers["proximal"]["constructor"]
+
+    # check if the problem is linear
+    if problem.is_linear:
+        return available_solvers["gurobipy"]["constructor"]
+
+    # check if the problem is differentiable and if it is mixed integer
+    if (
+        problem.is_twice_differentiable
+        and shutil.which("bonmin")
+        and problem.variable_domain
+        in [
+            VariableDomainTypeEnum.integer,
+            VariableDomainTypeEnum.mixed,
+        ]
+    ):
+        return available_solvers["pyomo_bonmin"]["constructor"]
+
+    # check if the problem is differentiable and continuous
+    if (
+        problem.is_twice_differentiable
+        and shutil.which("ipopt")
+        and problem.variable_domain in [VariableDomainTypeEnum.continuous]
+    ):
+        return available_solvers["pyomo_ipopt"]["constructor"]
+
+    # else, guess nevergrad heuristics to be the best
+    return available_solvers["nevergrad"]["constructor"]
+
+    # thigs to check: variable types, does the problem have constraint, constraint types, etc...
+
+
+def get_corrected_ideal_and_nadir(problem: Problem) -> tuple[dict[str, float | None], dict[str, float | None] | None]:
+    """Compute the corrected ideal and nadir points depending if an objective function is to be maximized or not.
+
+    I.e., the ideal and nadir point element for objectives to be maximized will be multiplied by -1.
+
+    Args:
+        problem (Problem): the problem with the ideal and nadir points.
+
+    Raises:
+        ValueError: some of the ideal or nadir point components have not been defined
+            for some of the objectives.
+
+    Returns:
+        tuple[list[float], list[float]]: a list with the corrected ideal point
+            and a list with the corrected nadir point. Will return None for missing
+            elements.
+    """
+    # check that ideal and nadir points are actually defined
+    if any(obj.ideal is None for obj in problem.objectives) or any(obj.nadir is None for obj in problem.objectives):
+        msg = "Some of the objectives have not a defined ideal or nadir value."
+        raise ValueError(msg)
+
+    ideal_point = {
+        objective.symbol: objective.ideal if not objective.maximize else -objective.ideal
+        for objective in problem.objectives
+    }
+    nadir_point = {
+        objective.symbol: objective.nadir if not objective.maximize else -objective.nadir
+        for objective in problem.objectives
+    }
+
+    return ideal_point, nadir_point
+
+
+def get_corrected_ideal(problem: Problem) -> dict[str, float | None]:
+    """Compute the corrected ideal point depending if an objective function is to be maximized or not.
+
+    I.e., the ideal point element for objectives to be maximized will be multiplied by -1.
+
+    Args:
+        problem (Problem): the problem with the ideal point.
+
+    Raises:
+        ValueError: some of the ideal point components have not been defined
+            for some of the objectives.
+
+    Returns:
+        list[float]: a list with the corrected ideal point. Will return None for missing elements.
+    """
+    # check that ideal points are actually defined
+    if any(obj.ideal is None for obj in problem.objectives):
+        msg = "Some of the objectives have not a defined ideal value."
+        raise ValueError(msg)
+
+    return {
+        objective.symbol: objective.ideal if not objective.maximize else -objective.ideal
+        for objective in problem.objectives
+    }
+
+
+def get_corrected_nadir(problem: Problem) -> dict[str, float | None]:
+    """Compute the corrected nadir point depending if an objective function is to be maximized or not.
+
+    I.e., the nadir point element for objectives to be maximized will be multiplied by -1.
+
+    Args:
+        problem (Problem): the problem with the nadir points.
+
+    Raises:
+        ValueError: some of the nadir point components have not been defined
+            for some of the objectives.
+
+    Returns:
+        list[float]: a list with the corrected nadir point. Will return None for missing elements.
+    """
+    # check that nadir points are actually defined
+    if any(obj.nadir is None for obj in problem.objectives):
+        msg = "Some of the objectives have not a defined nadir value."
+        raise ValueError(msg)
+
+    return {
+        objective.symbol: objective.nadir if not objective.maximize else -objective.nadir
+        for objective in problem.objectives
+    }
+
+
+def flip_maximized_objective_values(problem: Problem, objective_values: dict[str, float]) -> dict[str, float]:
+    """Flips the objective values if the objective function is to be maximized.
+
+    Flips the objective values if the objective function is to be maximized by multiplying
+    the values related to maximized objective functions by -1.
+
+    Args:
+        problem (Problem): the problem the objective values are related to.
+        objective_values (dict[str, float]): the objective values to be flipped.
+
+    Returns:
+        dict[str, float]: the flipped objective values.
+    """
+    return {
+        obj.symbol: objective_values[obj.symbol] * -1 if obj.maximize else objective_values[obj.symbol]
+        for obj in problem.objectives
+    }
+
+
+def payoff_table_method(problem: Problem, solver: BaseSolver = None) -> tuple[dict[str, float], dict[str, float]]:
+    """Solves a representation for the ideal and nadir points for a multiobjective optimization problem.
+
+    Args:
+        problem (Problem): The problem for which the ideal and nadir are solved.
+        solver (BaseSolver): The solver to be used in solving the points. Defaults to None.
+
+    Returns:
+        tuple[dict[str, float], dict[str, float]]: The estimated ideal and nadir points.
+    """
+    solver = solver if solver is not None else guess_best_solver(problem)
+    solver = solver(problem)
+
+    k = len(problem.objectives)
+    po_table = np.zeros((k, k))
+
+    for i in range(k):
+        res = solver.solve(f"{problem.objectives[i].symbol}_min")
+        for j in range(k):
+            po_table[i][j] = res.optimal_objectives[problem.objectives[j].symbol]
+
+    ideal = np.diag(po_table)
+    nadir = []
+
+    for i in range(k):
+        if problem.objectives[i].maximize:
+            nadir.append(np.min(po_table.T[i]))
+        else:
+            nadir.append(np.max(po_table.T[i]))
+    return numpy_array_to_objective_dict(problem, ideal), numpy_array_to_objective_dict(problem, nadir)
+
+
+def repair(lower_bounds: dict[str, float], upper_bounds: dict[str, float]) -> Callable[[pl.DataFrame], pl.DataFrame]:
+    """Repairs the offspring by clipping the values to be within the specified bounds.
+
+    Useful in evolutionary algorithms where offspring may go out of bounds due to crossover or mutation operations.
+
+    Args:
+        offspring (pl.DataFrame): The offspring to be repaired.
+        lower_bounds (dict[str, float]): The lower bounds for each variable.
+        upper_bounds (dict[str, float]): The upper bounds for each variable.
+
+    Returns:
+        Callable[[pl.DataFrame], pl.DataFrame]: A function that takes a DataFrame and returns a repaired DataFrame.
+    """
+
+    def actual_repair(offspring: pl.DataFrame) -> pl.DataFrame:
+        for var in offspring.columns:
+            offspring = offspring.with_columns(
+                pl.col(var).clip(lower_bound=lower_bounds[var], upper_bound=upper_bounds[var])
+            )
+        return offspring
+
+    return actual_repair

desdeo/tools/visualizations.py

@@ -0,0 +1,67 @@
+import plotly.graph_objects as go
+
+
+def scatter_plot_comparison(
+    *results, x_key="f_1", y_key="f_2", z_key=None, reference_point=None, names=None
+):
+    """
+    Plots multiple sets of data in a scatter plot (2D or 3D depending on the data).
+
+    Parameters:
+        *results: Variable number of result objects, each containing outputs with keys for x, y, and optionally z.
+        x_key: Key for the x-axis data in the outputs.
+        y_key: Key for the y-axis data in the outputs.
+        z_key: Key for the z-axis data in the outputs (optional, for 3D plots).
+        reference_point: A dictionary with keys matching x_key, y_key, and optionally z_key, representing the reference point to plot.
+        names: List of names for each data set to display in the legend.
+    """
+    traces = []
+    is_3d = z_key is not None and all(z_key in result.outputs for result in results)
+
+    if names is None:
+        names = [f"Dataset {i+1}" for i in range(len(results))]
+
+    for i, (result, name) in enumerate(zip(results, names)):
+        color = f"hsl({i * 360 / len(results)}, 100%, 50%)"  # Generate distinct colors
+        if is_3d:
+            trace = go.Scatter3d(
+                x=result.outputs[x_key],
+                y=result.outputs[y_key],
+                z=result.outputs[z_key],
+                mode="markers",
+                marker=dict(size=4, color=color, symbol="circle"),
+                name=name,
+            )
+        else:
+            trace = go.Scatter(
+                x=result.outputs[x_key],
+                y=result.outputs[y_key],
+                mode="markers",
+                marker=dict(size=8, color=color, symbol="circle"),
+                name=name,
+            )
+        traces.append(trace)
+
+    if reference_point:
+        if is_3d:
+            ref_trace = go.Scatter3d(
+                x=[reference_point[x_key]],
+                y=[reference_point[y_key]],
+                z=[reference_point[z_key]],
+                mode="markers",
+                marker=dict(size=4, color="black", symbol="circle"),
+                name="Reference Point",
+            )
+        else:
+            ref_trace = go.Scatter(
+                x=[reference_point[x_key]],
+                y=[reference_point[y_key]],
+                mode="markers",
+                marker=dict(size=8, color="black", symbol="circle"),
+                name="Reference Point",
+            )
+        traces.append(ref_trace)
+
+    fig = go.Figure(data=traces)
+
+    return fig

desdeo/utopia_stuff/data/1.json

@@ -0,0 +1,15 @@
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