dcscope 2.22.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dcscope/__init__.py +17 -0
- dcscope/__main__.py +44 -0
- dcscope/_version.py +21 -0
- dcscope/extensions.py +250 -0
- dcscope/gui/__init__.py +2 -0
- dcscope/gui/analysis/__init__.py +10 -0
- dcscope/gui/analysis/ana_basins.py +110 -0
- dcscope/gui/analysis/ana_basins.ui +143 -0
- dcscope/gui/analysis/ana_filter.py +341 -0
- dcscope/gui/analysis/ana_filter.ui +364 -0
- dcscope/gui/analysis/ana_log.py +122 -0
- dcscope/gui/analysis/ana_log.ui +100 -0
- dcscope/gui/analysis/ana_meta.py +207 -0
- dcscope/gui/analysis/ana_meta.ui +141 -0
- dcscope/gui/analysis/ana_plot.py +638 -0
- dcscope/gui/analysis/ana_plot.ui +1060 -0
- dcscope/gui/analysis/ana_slot.py +504 -0
- dcscope/gui/analysis/ana_slot.ui +684 -0
- dcscope/gui/analysis/ana_tables.py +227 -0
- dcscope/gui/analysis/ana_tables.ui +195 -0
- dcscope/gui/analysis/ana_view.py +69 -0
- dcscope/gui/analysis/ana_view.ui +269 -0
- dcscope/gui/analysis/dlg_slot_reorder.py +55 -0
- dcscope/gui/analysis/dlg_slot_reorder.ui +138 -0
- dcscope/gui/bulk/__init__.py +2 -0
- dcscope/gui/bulk/bulk_emodulus.py +200 -0
- dcscope/gui/bulk/bulk_emodulus.ui +245 -0
- dcscope/gui/compute/__init__.py +3 -0
- dcscope/gui/compute/comp_lme4.py +115 -0
- dcscope/gui/compute/comp_lme4.ui +194 -0
- dcscope/gui/compute/comp_lme4_dataset.py +51 -0
- dcscope/gui/compute/comp_lme4_dataset.ui +92 -0
- dcscope/gui/compute/comp_lme4_results.py +120 -0
- dcscope/gui/compute/comp_lme4_results.ui +268 -0
- dcscope/gui/compute/comp_stats.py +223 -0
- dcscope/gui/compute/comp_stats.ui +187 -0
- dcscope/gui/dcor/__init__.py +304 -0
- dcscope/gui/dcor/dcor.ui +118 -0
- dcscope/gui/export/__init__.py +3 -0
- dcscope/gui/export/e2data.py +394 -0
- dcscope/gui/export/e2data.ui +367 -0
- dcscope/gui/export/e2filter.py +76 -0
- dcscope/gui/export/e2filter.ui +111 -0
- dcscope/gui/export/e2plot.py +94 -0
- dcscope/gui/export/e2plot.ui +175 -0
- dcscope/gui/main.py +1089 -0
- dcscope/gui/main.ui +579 -0
- dcscope/gui/matrix/__init__.py +4 -0
- dcscope/gui/matrix/block_matrix.py +141 -0
- dcscope/gui/matrix/block_matrix.ui +207 -0
- dcscope/gui/matrix/data_matrix.py +574 -0
- dcscope/gui/matrix/dm_dataset.py +116 -0
- dcscope/gui/matrix/dm_dataset.ui +348 -0
- dcscope/gui/matrix/dm_element.py +111 -0
- dcscope/gui/matrix/dm_element.ui +169 -0
- dcscope/gui/matrix/dm_filter.py +115 -0
- dcscope/gui/matrix/dm_filter.ui +287 -0
- dcscope/gui/matrix/plot_matrix.py +316 -0
- dcscope/gui/matrix/pm_element.py +39 -0
- dcscope/gui/matrix/pm_plot.py +86 -0
- dcscope/gui/matrix/pm_plot.ui +249 -0
- dcscope/gui/pipeline_plot.py +797 -0
- dcscope/gui/pipeline_plot.ui +66 -0
- dcscope/gui/preferences.py +380 -0
- dcscope/gui/preferences.ui +554 -0
- dcscope/gui/quick_view/__init__.py +1 -0
- dcscope/gui/quick_view/qv_main.py +1072 -0
- dcscope/gui/quick_view/qv_main.ui +1297 -0
- dcscope/gui/quick_view/qv_scatter.py +284 -0
- dcscope/gui/quick_view/qv_style.css +10 -0
- dcscope/gui/update.py +90 -0
- dcscope/gui/widgets/__init__.py +15 -0
- dcscope/gui/widgets/bg_thread.py +29 -0
- dcscope/gui/widgets/bulk_list.py +79 -0
- dcscope/gui/widgets/bulk_list.ui +95 -0
- dcscope/gui/widgets/double_spin_box_nan.py +75 -0
- dcscope/gui/widgets/feature_combobox.py +140 -0
- dcscope/gui/widgets/get_path.py +42 -0
- dcscope/gui/widgets/key_value_table_widget.css +12 -0
- dcscope/gui/widgets/key_value_table_widget.py +75 -0
- dcscope/gui/widgets/mdi_subwindow_wo_close.py +12 -0
- dcscope/gui/widgets/qrangeslider.py +262 -0
- dcscope/gui/widgets/rangecontrol.py +308 -0
- dcscope/gui/widgets/rangecontrol.ui +136 -0
- dcscope/gui/widgets/simple_image_view.py +55 -0
- dcscope/gui/widgets/simple_plot_widget.py +113 -0
- dcscope/gui/widgets/so_colorbaritem.py +29 -0
- dcscope/gui/widgets/wait_cursor.py +33 -0
- dcscope/idiom.py +26 -0
- dcscope/img/__init__.py +2 -0
- dcscope/img/icon-theme/breeze/COPYING-ICONS +209 -0
- dcscope/img/icon-theme/breeze/COPYING.LIB +510 -0
- dcscope/img/icon-theme/breeze/README +5 -0
- dcscope/img/icon-theme/breeze/actions/16/application-exit.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/16/code-context.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/dialog-cancel.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/dialog-close.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/16/dialog-messages.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/dialog-ok-apply.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/dialog-ok.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/document-open-folder.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/document-open.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/document-save.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/documentinfo.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/16/draw-watercolor.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/edit-clear-all.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/edit-clear.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/edit-paste.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/globe.svg +16 -0
- dcscope/img/icon-theme/breeze/actions/16/gtk-preferences.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/list-add.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/messagebox_warning.svg +20 -0
- dcscope/img/icon-theme/breeze/actions/16/object-columns.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/object-order-lower.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/object-rows.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/office-chart-line-stacked.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/office-chart-ring.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/office-chart-scatter.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/path-mode-polyline.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/preferences-activities.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/remove.svg +10 -0
- dcscope/img/icon-theme/breeze/actions/16/search.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/show-grid.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/special_paste.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/tools-wizard.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/view-calendar-list.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/view-filter.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/view-list-tree.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/view-statistics.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/16/visibility.svg +21 -0
- dcscope/img/icon-theme/breeze/actions/22/application-exit.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/22/code-context.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/dialog-cancel.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/dialog-close.svg +10 -0
- dcscope/img/icon-theme/breeze/actions/22/dialog-messages.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/dialog-ok-apply.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/dialog-ok.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/document-open-folder.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/document-open.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/document-save.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/documentinfo.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/draw-watercolor.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/edit-clear-all.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/edit-clear.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/edit-paste.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/globe.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/22/gtk-preferences.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/22/list-add.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/messagebox_warning.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/object-columns.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/object-order-lower.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/object-rows.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/office-chart-line-stacked.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/office-chart-ring.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/office-chart-scatter.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/path-mode-polyline.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/22/preferences-activities.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/remove.svg +10 -0
- dcscope/img/icon-theme/breeze/actions/22/special_paste.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/tools-wizard.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/view-calendar-list.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/view-filter.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/view-list-tree.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/view-statistics.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/22/visibility.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/24/application-exit.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/code-context.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/dialog-cancel.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/dialog-close.svg +10 -0
- dcscope/img/icon-theme/breeze/actions/24/dialog-messages.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/dialog-ok-apply.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/dialog-ok.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/24/document-open-folder.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/document-open.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/document-save.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/documentinfo.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/24/draw-watercolor.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/edit-clear-all.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/24/edit-clear.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/edit-paste.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/globe.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/24/gtk-preferences.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/24/list-add.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/messagebox_warning.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/24/object-columns.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/object-order-lower.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/object-rows.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/office-chart-line-stacked.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/office-chart-ring.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/office-chart-scatter.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/path-mode-polyline.svg +15 -0
- dcscope/img/icon-theme/breeze/actions/24/preferences-activities.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/24/remove.svg +10 -0
- dcscope/img/icon-theme/breeze/actions/24/special_paste.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/tools-wizard.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/view-calendar-list.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/view-filter.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/view-list-tree.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/view-statistics.svg +12 -0
- dcscope/img/icon-theme/breeze/actions/24/visibility.svg +14 -0
- dcscope/img/icon-theme/breeze/actions/32/application-exit.svg +8 -0
- dcscope/img/icon-theme/breeze/actions/32/dialog-cancel.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/32/dialog-messages.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/32/dialog-ok-apply.svg +1 -0
- dcscope/img/icon-theme/breeze/actions/32/dialog-ok.svg +1 -0
- dcscope/img/icon-theme/breeze/actions/32/document-open-folder.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/32/document-open.svg +13 -0
- dcscope/img/icon-theme/breeze/actions/32/document-save.svg +18 -0
- dcscope/img/icon-theme/breeze/actions/32/gtk-preferences.svg +17 -0
- dcscope/img/icon-theme/breeze/actions/32/object-order-lower.svg +18 -0
- dcscope/img/icon-theme/breeze/actions/32/view-filter.svg +18 -0
- dcscope/img/icon-theme/breeze/actions/32/view-list-tree.svg +18 -0
- dcscope/img/icon-theme/breeze/places/16/folder-cloud.svg +13 -0
- dcscope/img/icon-theme/breeze/places/16/folder.svg +13 -0
- dcscope/img/icon-theme/breeze/places/22/folder-cloud.svg +13 -0
- dcscope/img/icon-theme/breeze/places/22/folder.svg +13 -0
- dcscope/img/icon-theme/breeze/places/24/folder-cloud.svg +12 -0
- dcscope/img/icon-theme/breeze/places/24/folder.svg +12 -0
- dcscope/img/icon-theme/breeze/places/32/folder-cloud.svg +35 -0
- dcscope/img/icon-theme/breeze/places/32/folder.svg +30 -0
- dcscope/img/icon-theme/breeze/places/64/folder-cloud.svg +35 -0
- dcscope/img/icon-theme/breeze/places/64/folder.svg +30 -0
- dcscope/img/icon-theme/breeze/status/16/dialog-error.svg +9 -0
- dcscope/img/icon-theme/breeze/status/16/dialog-information.svg +9 -0
- dcscope/img/icon-theme/breeze/status/16/dialog-question.svg +7 -0
- dcscope/img/icon-theme/breeze/status/16/dialog-warning.svg +9 -0
- dcscope/img/icon-theme/breeze/status/22/dialog-error.svg +9 -0
- dcscope/img/icon-theme/breeze/status/22/dialog-information.svg +9 -0
- dcscope/img/icon-theme/breeze/status/22/dialog-question.svg +7 -0
- dcscope/img/icon-theme/breeze/status/22/dialog-warning.svg +9 -0
- dcscope/img/icon-theme/breeze/status/24/dialog-error.svg +13 -0
- dcscope/img/icon-theme/breeze/status/24/dialog-information.svg +13 -0
- dcscope/img/icon-theme/breeze/status/24/dialog-question.svg +9 -0
- dcscope/img/icon-theme/breeze/status/24/dialog-warning.svg +1 -0
- dcscope/img/icon-theme/breeze/status/64/dialog-error.svg +25 -0
- dcscope/img/icon-theme/breeze/status/64/dialog-information.svg +25 -0
- dcscope/img/icon-theme/breeze/status/64/dialog-question.svg +25 -0
- dcscope/img/icon-theme/breeze/status/64/dialog-warning.svg +25 -0
- dcscope/img/icon-theme/collect_icons.py +124 -0
- dcscope/img/icon-theme/dcscope/dcor.png +0 -0
- dcscope/img/icon-theme/dcscope/edit-copy-anew.svg +13 -0
- dcscope/img/icon-theme/dcscope/emodulus.svg +69 -0
- dcscope/img/icon-theme/dcscope/filter_ray.svg +54 -0
- dcscope/img/icon-theme/dcscope/region_channel.svg +86 -0
- dcscope/img/icon-theme/dcscope/region_reservoir.svg +89 -0
- dcscope/img/icon-theme/dcscope/rlang.svg +108 -0
- dcscope/img/icon-theme/dcscope/statistical_significance.svg +106 -0
- dcscope/img/icon-theme/index.theme +81 -0
- dcscope/img/icon.png +0 -0
- dcscope/img/icon.svg +73 -0
- dcscope/img/splash.png +0 -0
- dcscope/meta_tool.py +143 -0
- dcscope/pipeline/__init__.py +5 -0
- dcscope/pipeline/core.py +632 -0
- dcscope/pipeline/dataslot.py +270 -0
- dcscope/pipeline/filter.py +161 -0
- dcscope/pipeline/filter_ray.py +170 -0
- dcscope/pipeline/plot.py +187 -0
- dcscope/plot_cache.py +79 -0
- dcscope/session.py +379 -0
- dcscope/util.py +34 -0
- dcscope-2.22.1.dist-info/METADATA +95 -0
- dcscope-2.22.1.dist-info/RECORD +267 -0
- dcscope-2.22.1.dist-info/WHEEL +5 -0
- dcscope-2.22.1.dist-info/entry_points.txt +2 -0
- dcscope-2.22.1.dist-info/licenses/LICENSE +621 -0
- dcscope-2.22.1.dist-info/top_level.txt +1 -0
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Name: dcscope
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Version: 2.22.1
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Summary: User interface for deformability cytometry (DC)
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Author: Benedikt Hartmann, Eoghan O'Connell, Maximilian Schlögel, Paul Müller
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Maintainer-email: Paul Müller <dev@craban.de>
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License-Expression: GPL-3.0-or-later
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Project-URL: source, https://github.com/DC-analysis/DCscope
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Project-URL: tracker, https://github.com/DC-analysis/DCscope/issues
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Project-URL: documentation, https://dcscope.readthedocs.io
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Project-URL: changelog, https://github.com/DC-analysis/DCscope/blob/main/CHANGELOG
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Keywords: RT-DC,DC,deformability,cytometry
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Intended Audience :: Science/Research
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Description-Content-Type: text/x-rst
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License-File: LICENSE
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Requires-Dist: dclab[dcor,export,http,s3]>=0.64.0
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|DCscope|
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===========
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**DCscope** (formerly Shape-Out) is a graphical user interface for the
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analysis and visualization of RT-DC datasets.
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Documentation
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-------------
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The documentation, including the code reference and examples, is available at
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`dcscope.readthedocs.io <https://dcscope.readthedocs.io>`__.
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Installation
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------------
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Installers for Windows and macOS are available at the `release page <https://github.com/DC-analysis/DCscope/releases>`__.
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Citing DCscope
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Please cite DCscope either in-line
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(...) using the analysis software DCscope (formerly Shape-Out) version 2.X.X
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(available at https://github.com/DC-analysis/DCscope).
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or in a bibliography
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::
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Paul Müller and others (2019), DCscope (formerly Shape-Out) version 2.X.X:
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Analysis software for real-time deformability cytometry [Software].
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Available at https://github.com/DC-analysis/DCscope.
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and replace ``2.X.X`` with the version of DCscope that you used.
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Testing
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-------
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::
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pip install -e .
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pip install -r tests/requirements.txt
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pytest tests
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.. |DCscope| image:: https://raw.github.com/DC-analysis/DCscope/main/docs/artwork/dcscope_splash.png
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.. |PyPI Version| image:: https://img.shields.io/pypi/v/DCscope.svg
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:target: https://pypi.python.org/pypi/DCscope
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.. |Build Status| image:: https://img.shields.io/github/actions/workflow/status/DC-analysis/DCscope/check.yml?branch=main
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:target: https://github.com/DC-analysis/DCscope/actions?query=workflow%3AChecks
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.. |Coverage Status| image:: https://img.shields.io/codecov/c/github/DC-analysis/DCscope/main.svg
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:target: https://codecov.io/gh/DC-analysis/DCscope
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.. |Docs Status| image:: https://img.shields.io/readthedocs/dcscope
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