dcscope 2.22.1__py3-none-any.whl

dcscope/gui/analysis/ana_meta.py

@@ -0,0 +1,207 @@
+import numbers
+import importlib.resources
+
+import dclab
+import numpy as np
+from PyQt6 import uic, QtCore, QtWidgets
+
+from ... import meta_tool
+
+
+class MetaPanel(QtWidgets.QWidget):
+    def __init__(self, *args, **kwargs):
+        super(MetaPanel, self).__init__(*args, **kwargs)
+        ref = importlib.resources.files(
+            "dcscope.gui.analysis") / "ana_meta.ui"
+        with importlib.resources.as_file(ref) as path_ui:
+            uic.loadUi(path_ui, self)
+
+        self.comboBox_slots.currentIndexChanged.connect(self.update_content)
+        self.pipeline_state = None
+        self.update_content()
+
+    @property
+    def current_slot_state(self):
+        if self.pipeline_state is not None:
+            slot_index = self.comboBox_slots.currentIndex()
+            slot_state = self.pipeline_state["slots"][slot_index]
+        else:
+            slot_state = None
+        return slot_state
+
+    @property
+    def slot_ids(self):
+        """List of slot identifiers"""
+        if self.pipeline_state is not None:
+            ids = [ss["identifier"] for ss in self.pipeline_state["slots"]]
+        else:
+            ids = []
+        return ids
+
+    @property
+    def slot_names(self):
+        """List of slot names"""
+        if self.pipeline_state is not None:
+            nms = [ss["name"] for ss in self.pipeline_state["slots"]]
+        else:
+            nms = []
+        return nms
+
+    def set_pipeline(self, pipeline):
+        self.pipeline_state = pipeline.__getstate__()
+
+    def update_info_box(self, group_box, config, section):
+        """Populate an individual group box with keyword-value pairs"""
+        group_box.layout().setAlignment(QtCore.Qt.AlignmentFlag.AlignTop)
+        # cleanup
+        for ii in reversed(range(group_box.layout().count())):
+            item = group_box.layout().itemAt(ii).widget()
+            if item is not None:
+                item.deleteLater()
+                item.setParent(None)
+        # populate
+        items = sort_config_section_items(section, config[section].items())
+        if items:
+            for key, value in items:
+                k, v, t = format_config_key_value(section, key, value)
+                widget = QtWidgets.QWidget()
+                hbox = QtWidgets.QHBoxLayout()
+                hbox.setAlignment(QtCore.Qt.AlignmentFlag.AlignLeft)
+                hbox.setContentsMargins(0, 0, 0, 0)
+                ldescr = QtWidgets.QLabel(k + ": ")
+                ldescr.setToolTip(f"{section}:{key}")
+                ldescr.setAlignment(QtCore.Qt.AlignmentFlag.AlignTop)
+                hbox.addWidget(ldescr)
+                lvalue = QtWidgets.QLabel(v)
+                if t:
+                    lvalue.setToolTip(t)
+                lvalue.setAlignment(QtCore.Qt.AlignmentFlag.AlignBottom)
+                hbox.addWidget(lvalue)
+                widget.setLayout(hbox)
+                group_box.layout().addWidget(widget)
+            group_box.show()
+        else:
+            group_box.hide()
+        self.update()
+
+    def update_content(self, slot_index=None, **kwargs):
+        if self.slot_ids:
+            self.setEnabled(True)
+            # update combobox
+            self.comboBox_slots.blockSignals(True)
+            if slot_index is None or slot_index < 0:
+                slot_index = max(0, self.comboBox_slots.currentIndex())
+            slot_index = min(slot_index, len(self.slot_ids) - 1)
+
+            self.comboBox_slots.clear()
+            self.comboBox_slots.addItems(self.slot_names)
+            self.comboBox_slots.setCurrentIndex(slot_index)
+            self.comboBox_slots.blockSignals(False)
+            # populate content
+            slot_state = self.pipeline_state["slots"][slot_index]
+            cfg = meta_tool.get_rtdc_config(slot_state["path"])
+            self.update_info_box(self.groupBox_experiment, cfg,
+                                 "experiment")
+            self.update_info_box(self.groupBox_pipeline, cfg,
+                                 "pipeline")
+            self.update_info_box(self.groupBox_fluorescence, cfg,
+                                 "fluorescence")
+            self.update_info_box(self.groupBox_imaging, cfg,
+                                 "imaging")
+            self.update_info_box(self.groupBox_online_contour, cfg,
+                                 "online_contour")
+            self.update_info_box(self.groupBox_online_filter, cfg,
+                                 "online_filter")
+            self.update_info_box(self.groupBox_setup, cfg,
+                                 "setup")
+            self.update_info_box(self.groupBox_user, cfg,
+                                 "user")
+        else:
+            self.setEnabled(False)
+
+
+def format_config_key_value(section, key, value):
+    dtype = dclab.dfn.get_config_value_type(section, key)
+    descr = dclab.dfn.get_config_value_descr(section, key)
+    tip = ""
+    # Value formatting
+    if dtype == numbers.Number:  # pretty-print floats
+        if abs(value) < 1e-12:
+            # small enough to be considered zero for all metadata
+            string = "0.0"
+        else:
+            # determine number of decimals
+            dec = int(np.ceil(np.log10(1/np.abs(value))))
+            if dec < 0:
+                dec = 0
+            string = ("{:." + "{}".format(dec + 2) + "f}").format(value)
+    else:
+        string = str(value)
+
+    # Special cases
+    if section == "experiment":
+        if key in ["date", "time"]:
+            descr, form = descr.split("(")
+            tip = form.strip("()'")
+        elif key == "sample":
+            descr = "Sample name"
+    elif section == "online_filter":
+        if key.endswith("polygon points"):
+            # format polygon points
+            descr = "\n".join(descr.split(" ", 1))
+            string = "\n".join([f"({x:.5g}, {y:.5g})" for x, y in value])
+        elif key.endswith("soft limit"):
+            descr = "\n".join(descr.split(", polygon ", 1))
+    elif section == "setup":
+        if key == "chip region":
+            descr = descr.split(" (")[0]
+        elif key == "medium" and string == "CellCarrierB":
+            string = "CellCarrier B"
+        elif key == "module composition":
+            descr = "Modules used"
+            string = ", ".join(string.split(","))
+        elif key == "software version":
+            descr = "Software"
+
+    # Units
+    if descr.endswith("]"):
+        descr, units = descr.rsplit(" [", 1)
+        units = units.strip("] ")
+        string += " " + units
+
+    return descr, string, tip
+
+
+def sort_config_section_items(section, items):
+    if section == "experiment":
+        order = ["sample", "run index", "event count", "date", "time"]
+    elif section == "pipeline":
+        order = ["dcnum generation",
+                 "dcnum data",
+                 "dcnum background",
+                 "dcnum segmenter",
+                 "dcnum feature",
+                 "dcnum gate",
+                 "dcnum hash",
+                 "dcnum mapping",
+                 "dcnum yield",
+                 ]
+    elif section == "setup":
+        order = ["medium", "channel width"]
+    else:
+        order = None
+
+    if order is None:
+        sitems = items
+    else:
+        sitems = []
+        for key in order:
+            for item in items:
+                if key == item[0]:
+                    sitems.append(item)
+                    break
+        # append those not in `order`
+        for item in items:
+            if item not in sitems:
+                sitems.append(item)
+    return sitems

dcscope/gui/analysis/ana_meta.ui

@@ -0,0 +1,141 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>Form</class>
+ <widget class="QWidget" name="Form">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>700</width>
+    <height>532</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>Form</string>
+  </property>
+  <layout class="QVBoxLayout" name="verticalLayout_7">
+   <item>
+    <layout class="QHBoxLayout" name="horizontalLayout">
+     <property name="topMargin">
+      <number>0</number>
+     </property>
+     <item>
+      <widget class="QLabel" name="label">
+       <property name="text">
+        <string>Dataset</string>
+       </property>
+      </widget>
+     </item>
+     <item>
+      <widget class="QComboBox" name="comboBox_slots">
+       <property name="sizeAdjustPolicy">
+        <enum>QComboBox::AdjustToContents</enum>
+       </property>
+      </widget>
+     </item>
+     <item>
+      <spacer name="horizontalSpacer">
+       <property name="orientation">
+        <enum>Qt::Horizontal</enum>
+       </property>
+       <property name="sizeHint" stdset="0">
+        <size>
+         <width>0</width>
+         <height>20</height>
+        </size>
+       </property>
+      </spacer>
+     </item>
+    </layout>
+   </item>
+   <item>
+    <widget class="QScrollArea" name="scrollArea">
+     <property name="widgetResizable">
+      <bool>true</bool>
+     </property>
+     <widget class="QWidget" name="scrollAreaWidgetContents">
+      <property name="geometry">
+       <rect>
+        <x>0</x>
+        <y>0</y>
+        <width>680</width>
+        <height>482</height>
+       </rect>
+      </property>
+      <layout class="QGridLayout" name="gridLayout_2">
+       <item row="4" column="0">
+        <widget class="QGroupBox" name="groupBox_imaging">
+         <property name="title">
+          <string>Imaging</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_3"/>
+        </widget>
+       </item>
+       <item row="3" column="0">
+        <widget class="QGroupBox" name="groupBox_setup">
+         <property name="title">
+          <string>Setup</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_2"/>
+        </widget>
+       </item>
+       <item row="7" column="0">
+        <widget class="QGroupBox" name="groupBox_online_filter">
+         <property name="title">
+          <string>Online Filter</string>
+         </property>
+         <property name="checkable">
+          <bool>false</bool>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_5"/>
+        </widget>
+       </item>
+       <item row="0" column="0">
+        <widget class="QGroupBox" name="groupBox_experiment">
+         <property name="title">
+          <string>Experiment</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout"/>
+        </widget>
+       </item>
+       <item row="2" column="0">
+        <widget class="QGroupBox" name="groupBox_user">
+         <property name="title">
+          <string>User</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_8"/>
+        </widget>
+       </item>
+       <item row="5" column="0">
+        <widget class="QGroupBox" name="groupBox_fluorescence">
+         <property name="title">
+          <string>Fluorescence</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_4"/>
+        </widget>
+       </item>
+       <item row="8" column="0">
+        <widget class="QGroupBox" name="groupBox_online_contour">
+         <property name="title">
+          <string>Online Contour</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_6"/>
+        </widget>
+       </item>
+       <item row="1" column="0">
+        <widget class="QGroupBox" name="groupBox_pipeline">
+         <property name="title">
+          <string>Pipeline</string>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayout_9"/>
+        </widget>
+       </item>
+      </layout>
+     </widget>
+    </widget>
+   </item>
+  </layout>
+ </widget>
+ <resources/>
+ <connections/>
+</ui>