dbdreader 0.6.0.dev1__cp310-cp310-win_amd64.whl

dbdreader-0.6.0.dev1.dist-info/METADATA

@@ -0,0 +1,272 @@
+Metadata-Version: 2.4
+Name: dbdreader
+Version: 0.6.0.dev1
+Summary: A python module to access binary data files generated by Teledyne WebbResearch gliders
+Author-email: Lucas Merckelbach <lucas.merckelbach@hereon.de>
+License: GPL-3.0
+Project-URL: Homepage, https://dbdreader.readthedocs.io/en/latest/
+Classifier: Programming Language :: Python :: 3
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
+Classifier: Operating System :: POSIX
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: COPYING
+Requires-Dist: lz4>=4.4.5
+Requires-Dist: numpy>=2.2.6
+Requires-Dist: scipy>=1.15.3
+Dynamic: license-file
+
+[![PyPI version](https://badgen.net/pypi/v/dbdreader)](https://pypi.org/project/dbdreader)
+[![Docs badge](https://readthedocs.org/projects/dbdreader/badge/?version=latest)](https://dbdreader.readthedocs.io/en/latest/)
+[![License](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
+
+# DBDREADER
+
+## Synopsis
+
+Slocum ocean gliders are autonomous underwater vehicles, used for
+making oceanographic measurements. The data that these devices and
+their sensors collect, are stored in binary data files. The python
+module *dbdreader* provides the utilities to extract the data from the
+binary files, so that they can be further analysed.
+
+## Change log
+
+### version 0.5.9
+
+* Handles reading errors that can occur when a compressed file turns
+  out to be corrupted.
+
+### version 0.5.8
+
+* Changes default location for cache files on linux from
+  `$HOME/.dbdreader` to `$HOME/.local/share/dbdreader`
+
+* Introduces new class DBDCache to manage the location where cache
+  files are looked up. Constructing an object with an arguments (re-)sets a
+  default path, avoiding the need to use the keyword cacheDir when
+  creating objects of DBD and MultiDBD classes.
+
+* Fixes an issue with MultiDBD when a parameter is requested that is
+  not present in all files, but in at least one. The get() method
+  returns just those data that are present. In case of get_sync and
+  friends, data are interpolated if possible, or padded with nans.
+
+### Version 0.5.7
+
+* Drops dependency on python 3.10+, introduced in 0.5.6, and should
+  work still with python 3.9.
+
+### Version 0.5.6
+
+* Moves data directory under dbdreader, making these files accessible
+  after an pip install
+
+### Version 0.5.5
+
+* Makes MultiDBD's get_CTD_sync method compatible with RBR CTD data.
+
+### Version 0.5.4
+
+* Adds support for reading compressed data files for windows platform.
+* Improved building environment
+
+### Version 0.5.1
+
+* Adds support for reading compressed data files
+* dbdrename now accepts -x and -X options to rename compressed data files as uncompressed data files
+
+### Version 0.4.15
+
+* Modifies sorting key algorithm to the DBDList class. This fixes a
+  bug when glider data filenames are composed of a glider name that
+  contains a dash. For example, filenames such as hereon-amadeus-2019-3-1.sbd
+  would fail, but are valid now.
+
+### Version 0.4.14
+
+* Adds a new option to the get() method of the MultiDBD class, where
+  if the keyword include_sources=True, for each parameter an
+  additional list is returned that has for each data point a reference
+  to the DBD instance that produced the data point. This allows to
+  query the source of a specific data point.
+
+  This merges the (modified) pull request #14 by MCazaly.
+
+### Version 0.4.13
+
+* Modifies behaviour when the user requests a parameter that has no
+  data. If the requested parameter is not a valid glider sensor name,
+  assume a user-error and raise an exception, otherwise return an
+  empty array.
+
+  This behaviour fixes a bug for MultiDBD:
+  each file opened with MultiDBD would fail to produce any data if one or
+  more parameters that are asked for, are not present in the file.
+
+  New behaviour returns data for the exisiting parameters (only); empty
+  array for the missing parameters (or nans if return_nans=True)
+
+  Concludes pull request #16 by jklymak.
+
+### Version 0.4.12
+
+* PatternSelect now accepts the option of a non-standard cache
+  directory.
+  Thanks to hawesie.
+
+* MultiDBD's get_sync() now returns nan's for those parameters for
+  which no data exist, provided that at least one of the requested
+  parameters contains data.
+
+### Version 0.4.11
+
+* Version 0.4.9 introduced a bug that in some rare circumstances caused
+  segmentation faults. This has been fixed.
+
+* Merged pull request by roje-bodc with improved error handling in
+  case of missing cache files. If a DbdError occurs due to a missing
+  cache file, detailed information can be obtained from the .data
+  property of the exception instance.
+
+### Version 0.4.10
+
+* Includes pull request by jklymak, which allows dbdreader to deal
+  with empty files, and files capitalised file extensions, as well as
+  a check on the encoding version.
+
+* Includes a bug fix when raising an exception when handling a prior
+  exception in case of reading problematic files.
+
+* Assumes that if the first parameter given to MultiDBD is a string,
+  the user did not mean to provide a list of filename strings, but a
+  pattern. An error is raised if pattern is specified explicitly when
+  filenames is given as a string.
+
+### Version 0.4.9
+
+* Bug fix for handling inf values correctly (issue #8). Thanks to jr3cermak for spotting this bug.
+* Bug fix for incorrect behaviour when reading the time parameter explicitly for example xxx.get("m_present_time").
+
+### Version 0.4.8
+
+* Support for reading {demnst}bd files from G3S gliders (issue #6). (Thanks to Owain Jones)
+
+* Bug fix for correctly throwing an exception when cache file is missing(issue #5)
+
+### Version 0.4.7
+
+* Bug fix for reading dbd files on Windows.
+
+* a wheel provided for CPython 3.9 on Windows 64 bit.
+
+### Version 0.4.6
+
+* Added  get_CTD_sync, a convenience method to retrieve CTD data, and other parameters mapped on the CTD time stamps. Also ensures time stamps are monotonically increasing.
+
+* Adds bounds to what values of latitude and longitude are considered valid.
+
+### Version 0.4.5
+
+* dbdreader now ignores the first line of data in each binary file
+
+* dbdreader checks whether the value of the parameters read are finite, ignoring them if they are not.
+
+## Installation (linux)
+
+The python module *dbdreader* can be installed from source, using the
+standard method to install python code. Note that this method requires
+an C-extension to be build. (The actual reading from files is done in
+C for speed.) In order to build the extension successfully, you would
+need a C-compiler. On Linux, this can be gcc, with supporting
+development/header files for python. On Fedora you would do `sudo dnf
+install python3-devel`, or `sudo apt-get install python3-dev` on
+Ubuntu.
+
+Furthermore, as of version 0.5, which adds support for reading
+compressed files, a dependency on the lz4 library is introduced. If
+available, the system-wide library will be used (recommended
+approach). Alternatively, the lz4.[ch] files from the original source
+(<https://github.com/lz4/lz4>), and included in this package, will be
+compiled into the C-extension. To install the system-wide lz4 library
+on Fedora you would do `sudo dnf install lz4-devel lz4-libs`. On
+Ubuntu this can be achieved by `sudo apt-get install liblz4-dev
+liblz4-1`.
+
+Alternatively, dbdreader can also be installed from PyPi, using `pip3
+install dbdreader`.
+
+## Installation on Windows
+
+If you want to install dbdreader from source, you will need a C
+compiler as well to compile the C-extension. Besides the Python
+environment you will need to install the Microsoft Visual Studio
+Compiler. The community edition will do. When installing MVSC, make sure
+you tick the box *python development* during the setup. Once installed
+dbdreader can be installed, and the C-extension should be compiled
+automatically.
+
+Installiation using pip, for example as in `py -m pip install
+dbdreader` also requires the C compiler. For Python version 3.9,
+however, a wheel is provided, which can be installed adding the option
+`--only-binary :all:` to the pip command:
+
+```
+$ pip install --only-binary :all: dbdreader
+```
+
+## Documentation
+
+Comprehensive documentation is provided at <https://dbdreader.readthedocs.io/en/latest/>
+
+## Quick-start
+
+For the impatient...
+
+The dbdreader module implements a class DBD() which provides the
+machinery to read a single dbd file. The most commonly used methods
+are:
+
+* `get(parametername)`
+* `get_sync(parametername, *other_parameternames)`
+
+The first method returs a tuple with time and values for requested
+parameter. The second method, returns a tuple with time and values of
+the first parameter requested, and of all further listed parameters,
+all interpolated on the time base of the first parameter.
+
+Mostly, it is not one file that is required to be processed, but a
+number of them. This interface is implemented by the MultiDBD
+class. Files can either be specified as a list of filenames, or as a
+pattern using wildcards.
+
+### Examples
+
+To read a single file:
+
+```python
+>>> dbd = DBD("00010010.dbd")
+>>> t, pitch = dbd.get("m_pitch")
+>>> t, hdg, ptch, roll = dbd.get_sync("m_heading", "m_pitch", "m_roll")
+```
+
+Or, doing the same, but using both dbd and ebd files:
+
+```python
+>>> dbd = DBD(pattern="00010010.[de]bd")
+>>> t, pitch = dbd.get("m_pitch")
+>>> t, hdg, ptch, roll = dbd.get_sync("m_heading", "m_pitch", "m_roll")
+>>> t, p_ctd, p_nav = dbd.get_sync("sci_water_pressure", "m_water_pressure")
+```
+
+## Python 2
+
+Python 2.7 is not supported anymore. However, you should be able to
+make the code able to run on python2.7 using the *future* package.
+
+* pip install future
+* pasteurize dbdreader.
+
+For details see <http://python-future.org/pasteurize.html>.

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dbdreader-0.6.0.dev1.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: setuptools (82.0.1)
+Root-Is-Purelib: false
+Tag: cp310-cp310-win_amd64
+

dbdreader-0.6.0.dev1.dist-info/entry_points.txt

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+[console_scripts]
+cac_gen = dbdreader.scripts:cac_gen
+dbdrename = dbdreader.scripts:dbdrename

dbdreader-0.6.0.dev1.dist-info/licenses/COPYING

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+		    GNU GENERAL PUBLIC LICENSE
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+on the Program, the distribution of the whole must be on the terms of
+this License, whose permissions for other licensees extend to the
+entire whole, and thus to each and every part regardless of who wrote it.
+
+Thus, it is not the intent of this section to claim rights or contest
+your rights to work written entirely by you; rather, the intent is to
+exercise the right to control the distribution of derivative or
+collective works based on the Program.
+
+In addition, mere aggregation of another work not based on the Program
+with the Program (or with a work based on the Program) on a volume of
+a storage or distribution medium does not bring the other work under
+the scope of this License.
+
+  3. You may copy and distribute the Program (or a work based on it,
+under Section 2) in object code or executable form under the terms of
+Sections 1 and 2 above provided that you also do one of the following:
+
+    a) Accompany it with the complete corresponding machine-readable
+    source code, which must be distributed under the terms of Sections
+    1 and 2 above on a medium customarily used for software interchange; or,
+
+    b) Accompany it with a written offer, valid for at least three
+    years, to give any third party, for a charge no more than your
+    cost of physically performing source distribution, a complete
+    machine-readable copy of the corresponding source code, to be
+    distributed under the terms of Sections 1 and 2 above on a medium
+    customarily used for software interchange; or,
+
+    c) Accompany it with the information you received as to the offer
+    to distribute corresponding source code.  (This alternative is
+    allowed only for noncommercial distribution and only if you
+    received the program in object code or executable form with such
+    an offer, in accord with Subsection b above.)
+
+The source code for a work means the preferred form of the work for
+making modifications to it.  For an executable work, complete source
+code means all the source code for all modules it contains, plus any
+associated interface definition files, plus the scripts used to
+control compilation and installation of the executable.  However, as a
+special exception, the source code distributed need not include
+anything that is normally distributed (in either source or binary
+form) with the major components (compiler, kernel, and so on) of the
+operating system on which the executable runs, unless that component
+itself accompanies the executable.
+
+If distribution of executable or object code is made by offering
+access to copy from a designated place, then offering equivalent
+access to copy the source code from the same place counts as
+distribution of the source code, even though third parties are not
+compelled to copy the source along with the object code.
+
+  4. You may not copy, modify, sublicense, or distribute the Program
+except as expressly provided under this License.  Any attempt
+otherwise to copy, modify, sublicense or distribute the Program is
+void, and will automatically terminate your rights under this License.
+However, parties who have received copies, or rights, from you under
+this License will not have their licenses terminated so long as such
+parties remain in full compliance.
+
+  5. You are not required to accept this License, since you have not
+signed it.  However, nothing else grants you permission to modify or
+distribute the Program or its derivative works.  These actions are
+prohibited by law if you do not accept this License.  Therefore, by
+modifying or distributing the Program (or any work based on the
+Program), you indicate your acceptance of this License to do so, and
+all its terms and conditions for copying, distributing or modifying
+the Program or works based on it.
+
+  6. Each time you redistribute the Program (or any work based on the
+Program), the recipient automatically receives a license from the
+original licensor to copy, distribute or modify the Program subject to
+these terms and conditions.  You may not impose any further
+restrictions on the recipients' exercise of the rights granted herein.
+You are not responsible for enforcing compliance by third parties to
+this License.
+
+  7. If, as a consequence of a court judgment or allegation of patent
+infringement or for any other reason (not limited to patent issues),
+conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot
+distribute so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you
+may not distribute the Program at all.  For example, if a patent
+license would not permit royalty-free redistribution of the Program by
+all those who receive copies directly or indirectly through you, then
+the only way you could satisfy both it and this License would be to
+refrain entirely from distribution of the Program.
+
+If any portion of this section is held invalid or unenforceable under
+any particular circumstance, the balance of the section is intended to
+apply and the section as a whole is intended to apply in other
+circumstances.
+
+It is not the purpose of this section to induce you to infringe any
+patents or other property right claims or to contest validity of any
+such claims; this section has the sole purpose of protecting the
+integrity of the free software distribution system, which is
+implemented by public license practices.  Many people have made
+generous contributions to the wide range of software distributed
+through that system in reliance on consistent application of that
+system; it is up to the author/donor to decide if he or she is willing
+to distribute software through any other system and a licensee cannot
+impose that choice.
+
+This section is intended to make thoroughly clear what is believed to
+be a consequence of the rest of this License.
+
+  8. If the distribution and/or use of the Program is restricted in
+certain countries either by patents or by copyrighted interfaces, the
+original copyright holder who places the Program under this License
+may add an explicit geographical distribution limitation excluding
+those countries, so that distribution is permitted only in or among
+countries not thus excluded.  In such case, this License incorporates
+the limitation as if written in the body of this License.
+
+  9. The Free Software Foundation may publish revised and/or new versions
+of the General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+Each version is given a distinguishing version number.  If the Program
+specifies a version number of this License which applies to it and "any
+later version", you have the option of following the terms and conditions
+either of that version or of any later version published by the Free
+Software Foundation.  If the Program does not specify a version number of
+this License, you may choose any version ever published by the Free Software
+Foundation.
+
+  10. If you wish to incorporate parts of the Program into other free
+programs whose distribution conditions are different, write to the author
+to ask for permission.  For software which is copyrighted by the Free
+Software Foundation, write to the Free Software Foundation; we sometimes
+make exceptions for this.  Our decision will be guided by the two goals
+of preserving the free status of all derivatives of our free software and
+of promoting the sharing and reuse of software generally.
+
+			    NO WARRANTY
+
+  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
+FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
+OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
+PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
+OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
+TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
+PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
+REPAIR OR CORRECTION.
+
+  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
+REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
+OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
+TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+		     END OF TERMS AND CONDITIONS
+
+	    How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program; if not, write to the Free Software
+    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+    Gnomovision version 69, Copyright (C) year name of author
+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary.  Here is a sample; alter the names:
+
+  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+  `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+  <signature of Ty Coon>, 1 April 1989
+  Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs.  If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library.  If this is what you want to do, use the GNU Library General
+Public License instead of this License.