crfm-helm 0.4.0__py3-none-any.whl → 0.5.10__py3-none-any.whl

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  1. crfm_helm-0.5.10.dist-info/METADATA +369 -0
  2. crfm_helm-0.5.10.dist-info/RECORD +1008 -0
  3. {crfm_helm-0.4.0.dist-info → crfm_helm-0.5.10.dist-info}/WHEEL +1 -1
  4. helm/benchmark/adaptation/adapter_spec.py +80 -29
  5. helm/benchmark/adaptation/adapters/adapter.py +2 -2
  6. helm/benchmark/adaptation/adapters/adapter_factory.py +39 -28
  7. helm/benchmark/adaptation/adapters/binary_ranking_adapter.py +1 -1
  8. helm/benchmark/adaptation/adapters/chat_adapter.py +49 -0
  9. helm/benchmark/adaptation/adapters/ehr_instruction_adapter.py +108 -0
  10. helm/benchmark/adaptation/adapters/generation_adapter.py +2 -1
  11. helm/benchmark/adaptation/adapters/in_context_learning_adapter.py +24 -8
  12. helm/benchmark/adaptation/adapters/language_modeling_adapter.py +3 -4
  13. helm/benchmark/adaptation/adapters/multimodal/generation_multimodal_adapter.py +4 -2
  14. helm/benchmark/adaptation/adapters/multimodal/in_context_learning_multimodal_adapter.py +2 -1
  15. helm/benchmark/adaptation/adapters/multimodal/multimodal_prompt.py +7 -0
  16. helm/benchmark/adaptation/adapters/multimodal/multiple_choice_joint_multimodal_adapter.py +112 -0
  17. helm/benchmark/adaptation/adapters/multimodal/test_in_context_learning_multimodal_adapter.py +6 -3
  18. helm/benchmark/adaptation/adapters/multimodal/test_multimodal_prompt.py +3 -1
  19. helm/benchmark/adaptation/adapters/multiple_choice_calibrated_adapter.py +1 -1
  20. helm/benchmark/adaptation/adapters/multiple_choice_joint_adapter.py +18 -8
  21. helm/benchmark/adaptation/adapters/multiple_choice_joint_chain_of_thought_adapter.py +87 -0
  22. helm/benchmark/adaptation/adapters/multiple_choice_separate_adapter.py +1 -1
  23. helm/benchmark/adaptation/adapters/test_adapter.py +5 -4
  24. helm/benchmark/adaptation/adapters/test_generation_adapter.py +46 -22
  25. helm/benchmark/adaptation/adapters/test_language_modeling_adapter.py +17 -29
  26. helm/benchmark/adaptation/adapters/test_multiple_choice_joint_adapter.py +138 -16
  27. helm/benchmark/adaptation/common_adapter_specs.py +443 -0
  28. helm/benchmark/adaptation/prompt.py +1 -1
  29. helm/benchmark/adaptation/request_state.py +6 -1
  30. helm/benchmark/adaptation/scenario_state.py +6 -2
  31. helm/benchmark/annotation/aci_bench_annotator.py +84 -0
  32. helm/benchmark/annotation/air_bench_annotator.py +79 -0
  33. helm/benchmark/annotation/alrage_annotator.py +90 -0
  34. helm/benchmark/annotation/annotator.py +48 -0
  35. helm/benchmark/annotation/annotator_factory.py +50 -0
  36. helm/benchmark/annotation/anthropic_red_team_annotator.py +57 -0
  37. helm/benchmark/annotation/autobencher_capabilities_annotator.py +107 -0
  38. helm/benchmark/annotation/autobencher_safety_annotator.py +98 -0
  39. helm/benchmark/annotation/bigcodebench_annotator.py +108 -0
  40. helm/benchmark/annotation/bird_sql_annotator.py +58 -0
  41. helm/benchmark/annotation/call_center_annotator.py +258 -0
  42. helm/benchmark/annotation/chw_care_plan_annotator.py +82 -0
  43. helm/benchmark/annotation/czech_bank_qa_annotator.py +78 -0
  44. helm/benchmark/annotation/dischargeme_annotator.py +96 -0
  45. helm/benchmark/annotation/ehr_sql_annotator.py +87 -0
  46. helm/benchmark/annotation/financebench_annotator.py +79 -0
  47. helm/benchmark/annotation/harm_bench_annotator.py +55 -0
  48. helm/benchmark/annotation/helpdesk_call_summarization_annotator.py +131 -0
  49. helm/benchmark/annotation/image2struct/image_compiler_annotator.py +93 -0
  50. helm/benchmark/annotation/image2struct/latex_compiler_annotator.py +59 -0
  51. helm/benchmark/annotation/image2struct/lilypond_compiler_annotator.py +86 -0
  52. helm/benchmark/annotation/image2struct/webpage_compiler_annotator.py +132 -0
  53. helm/benchmark/annotation/live_qa_annotator.py +76 -0
  54. helm/benchmark/annotation/med_dialog_annotator.py +88 -0
  55. helm/benchmark/annotation/medalign_annotator.py +89 -0
  56. helm/benchmark/annotation/medi_qa_annotator.py +87 -0
  57. helm/benchmark/annotation/medication_qa_annotator.py +86 -0
  58. helm/benchmark/annotation/mental_health_annotator.py +87 -0
  59. helm/benchmark/annotation/mimic_bhc_annotator.py +89 -0
  60. helm/benchmark/annotation/mimic_rrs_annotator.py +89 -0
  61. helm/benchmark/annotation/model_as_judge.py +309 -0
  62. helm/benchmark/annotation/mtsamples_procedures_annotator.py +87 -0
  63. helm/benchmark/annotation/mtsamples_replicate_annotator.py +90 -0
  64. helm/benchmark/annotation/omni_math/gpt_evaluation_template.txt +152 -0
  65. helm/benchmark/annotation/omni_math/gpt_evaluation_zero_shot_template.txt +36 -0
  66. helm/benchmark/annotation/omni_math_annotator.py +131 -0
  67. helm/benchmark/annotation/simple_safety_tests_annotator.py +50 -0
  68. helm/benchmark/annotation/spider_annotator.py +18 -0
  69. helm/benchmark/annotation/starr_patient_instructions_annotator.py +87 -0
  70. helm/benchmark/annotation/test_annotator_factory.py +26 -0
  71. helm/benchmark/annotation/test_dummy_annotator.py +44 -0
  72. helm/benchmark/annotation/wildbench/eval_template.pairwise.v2.md +75 -0
  73. helm/benchmark/annotation/wildbench/eval_template.score.v2.md +66 -0
  74. helm/benchmark/annotation/wildbench_annotator.py +119 -0
  75. helm/benchmark/annotation/xstest_annotator.py +100 -0
  76. helm/benchmark/annotation_executor.py +144 -0
  77. helm/benchmark/augmentations/cleva_perturbation.py +9 -8
  78. helm/benchmark/augmentations/contraction_expansion_perturbation.py +2 -2
  79. helm/benchmark/augmentations/contrast_sets_perturbation.py +2 -2
  80. helm/benchmark/augmentations/data_augmenter.py +0 -2
  81. helm/benchmark/augmentations/dialect_perturbation.py +4 -5
  82. helm/benchmark/augmentations/extra_space_perturbation.py +2 -2
  83. helm/benchmark/augmentations/filler_words_perturbation.py +2 -2
  84. helm/benchmark/augmentations/gender_perturbation.py +3 -3
  85. helm/benchmark/augmentations/lowercase_perturbation.py +2 -2
  86. helm/benchmark/augmentations/mild_mix_perturbation.py +6 -6
  87. helm/benchmark/augmentations/misspelling_perturbation.py +2 -2
  88. helm/benchmark/augmentations/person_name_perturbation.py +4 -5
  89. helm/benchmark/augmentations/perturbation.py +26 -4
  90. helm/benchmark/augmentations/perturbation_description.py +1 -1
  91. helm/benchmark/augmentations/space_perturbation.py +2 -2
  92. helm/benchmark/augmentations/suffix_perturbation.py +29 -0
  93. helm/benchmark/augmentations/synonym_perturbation.py +4 -3
  94. helm/benchmark/augmentations/test_perturbation.py +56 -19
  95. helm/benchmark/augmentations/translate_perturbation.py +31 -0
  96. helm/benchmark/augmentations/typos_perturbation.py +2 -2
  97. helm/benchmark/config_registry.py +7 -1
  98. helm/benchmark/data_preprocessor.py +2 -2
  99. helm/benchmark/executor.py +54 -25
  100. helm/benchmark/huggingface_registration.py +28 -10
  101. helm/benchmark/metrics/air_bench_metrics.py +3212 -0
  102. helm/benchmark/metrics/alrage_metric.py +35 -0
  103. helm/benchmark/metrics/annotation_metrics.py +108 -0
  104. helm/benchmark/metrics/basic_metrics.py +437 -667
  105. helm/benchmark/metrics/bbq_metrics.py +17 -6
  106. helm/benchmark/metrics/bias_metrics.py +18 -9
  107. helm/benchmark/metrics/bias_word_lists.py +1 -1
  108. helm/benchmark/metrics/bigcodebench_metrics.py +25 -0
  109. helm/benchmark/metrics/bird_sql_metrics.py +28 -0
  110. helm/benchmark/metrics/classification_metrics.py +107 -22
  111. helm/benchmark/metrics/cleva_accuracy_metrics.py +8 -5
  112. helm/benchmark/metrics/cleva_harms_metrics.py +12 -11
  113. helm/benchmark/metrics/code_metrics.py +5 -5
  114. helm/benchmark/metrics/code_metrics_helper.py +11 -3
  115. helm/benchmark/metrics/codeinsights_code_efficiency_metrics.py +186 -0
  116. helm/benchmark/metrics/codeinsights_code_evaluation_metrics.py +477 -0
  117. helm/benchmark/metrics/codeinsights_correct_code_metrics.py +366 -0
  118. helm/benchmark/metrics/codeinsights_edge_case_metrics.py +92 -0
  119. helm/benchmark/metrics/codeinsights_metric_specs.py +51 -0
  120. helm/benchmark/metrics/comet_metric.py +125 -0
  121. helm/benchmark/metrics/common_metric_specs.py +174 -0
  122. helm/benchmark/metrics/conv_fin_qa_calc_metrics.py +83 -0
  123. helm/benchmark/metrics/copyright_metrics.py +5 -5
  124. helm/benchmark/metrics/czech_bank_qa_metrics.py +29 -0
  125. helm/benchmark/metrics/decodingtrust_fairness_metrics.py +72 -0
  126. helm/benchmark/metrics/decodingtrust_ood_knowledge_metrics.py +66 -0
  127. helm/benchmark/metrics/decodingtrust_privacy_metrics.py +101 -0
  128. helm/benchmark/metrics/decodingtrust_stereotype_bias_metrics.py +202 -0
  129. helm/benchmark/metrics/disinformation_metrics.py +8 -114
  130. helm/benchmark/metrics/dry_run_metrics.py +35 -6
  131. helm/benchmark/metrics/efficiency_metrics.py +287 -0
  132. helm/benchmark/metrics/ehr_sql_metrics.py +159 -0
  133. helm/benchmark/metrics/evaluate_instances_metric.py +59 -0
  134. helm/benchmark/metrics/evaluate_reference_metrics.py +831 -0
  135. helm/benchmark/metrics/fin_qa_metrics.py +60 -0
  136. helm/benchmark/metrics/fin_qa_metrics_helper.py +398 -0
  137. helm/benchmark/metrics/gpqa_chain_of_thought_metric.py +115 -0
  138. helm/benchmark/metrics/gpt4_audio_critique_metrics.py +167 -0
  139. helm/benchmark/metrics/gpt4_audio_refusal_metrics.py +145 -0
  140. helm/benchmark/metrics/gpt4v_originality_critique_metrics.py +126 -0
  141. helm/benchmark/metrics/helpdesk_call_summarization_metrics.py +48 -0
  142. helm/benchmark/metrics/ifeval/instructions.py +1574 -0
  143. helm/benchmark/metrics/ifeval/instructions_registry.py +182 -0
  144. helm/benchmark/metrics/ifeval/instructions_registry.pyi +3 -0
  145. helm/benchmark/metrics/ifeval/instructions_util.py +153 -0
  146. helm/benchmark/metrics/ifeval_metrics.py +67 -0
  147. helm/benchmark/metrics/image_generation/aesthetics_metrics.py +54 -0
  148. helm/benchmark/metrics/image_generation/aesthetics_scorer.py +66 -0
  149. helm/benchmark/metrics/image_generation/clip_score_metrics.py +84 -0
  150. helm/benchmark/metrics/image_generation/denoised_runtime_metric.py +42 -0
  151. helm/benchmark/metrics/image_generation/detection_metrics.py +57 -0
  152. helm/benchmark/metrics/image_generation/detectors/base_detector.py +8 -0
  153. helm/benchmark/metrics/image_generation/detectors/vitdet.py +178 -0
  154. helm/benchmark/metrics/image_generation/efficiency_metrics.py +41 -0
  155. helm/benchmark/metrics/image_generation/fidelity_metrics.py +168 -0
  156. helm/benchmark/metrics/image_generation/fractal_dimension/__init__.py +0 -0
  157. helm/benchmark/metrics/image_generation/fractal_dimension/fractal_dimension_util.py +63 -0
  158. helm/benchmark/metrics/image_generation/fractal_dimension/test_fractal_dimension_util.py +33 -0
  159. helm/benchmark/metrics/image_generation/fractal_dimension_metric.py +50 -0
  160. helm/benchmark/metrics/image_generation/gender_metrics.py +58 -0
  161. helm/benchmark/metrics/image_generation/image_critique_metrics.py +284 -0
  162. helm/benchmark/metrics/image_generation/lpips_metrics.py +82 -0
  163. helm/benchmark/metrics/image_generation/multi_scale_ssim_metrics.py +82 -0
  164. helm/benchmark/metrics/image_generation/nsfw_detector.py +96 -0
  165. helm/benchmark/metrics/image_generation/nsfw_metrics.py +103 -0
  166. helm/benchmark/metrics/image_generation/nudity_metrics.py +38 -0
  167. helm/benchmark/metrics/image_generation/photorealism_critique_metrics.py +153 -0
  168. helm/benchmark/metrics/image_generation/psnr_metrics.py +78 -0
  169. helm/benchmark/metrics/image_generation/q16/__init__.py +0 -0
  170. helm/benchmark/metrics/image_generation/q16/q16_toxicity_detector.py +90 -0
  171. helm/benchmark/metrics/image_generation/q16/test_q16.py +20 -0
  172. helm/benchmark/metrics/image_generation/q16_toxicity_metrics.py +48 -0
  173. helm/benchmark/metrics/image_generation/skin_tone_metrics.py +164 -0
  174. helm/benchmark/metrics/image_generation/uiqi_metrics.py +92 -0
  175. helm/benchmark/metrics/image_generation/watermark/__init__.py +0 -0
  176. helm/benchmark/metrics/image_generation/watermark/test_watermark_detector.py +16 -0
  177. helm/benchmark/metrics/image_generation/watermark/watermark_detector.py +87 -0
  178. helm/benchmark/metrics/image_generation/watermark_metrics.py +48 -0
  179. helm/benchmark/metrics/instruction_following_critique_metrics.py +48 -5
  180. helm/benchmark/metrics/kpi_edgar_metrics.py +142 -0
  181. helm/benchmark/metrics/language_modeling_metrics.py +111 -0
  182. helm/benchmark/metrics/live_qa_metrics.py +35 -0
  183. helm/benchmark/metrics/llm_jury_metrics.py +58 -0
  184. helm/benchmark/metrics/lmkt_metric_specs.py +12 -0
  185. helm/benchmark/metrics/lmkt_metrics.py +47 -0
  186. helm/benchmark/metrics/machine_translation_metrics.py +89 -0
  187. helm/benchmark/metrics/medcalc_bench_metrics.py +137 -0
  188. helm/benchmark/metrics/medec_metrics.py +124 -0
  189. helm/benchmark/metrics/melt_bias_metric.py +234 -0
  190. helm/benchmark/metrics/melt_bias_word_lists.py +1367 -0
  191. helm/benchmark/metrics/melt_metric_specs.py +43 -0
  192. helm/benchmark/metrics/melt_toxicity_metric.py +107 -0
  193. helm/benchmark/metrics/metric.py +121 -175
  194. helm/benchmark/metrics/metric_name.py +0 -1
  195. helm/benchmark/metrics/metric_service.py +23 -7
  196. helm/benchmark/metrics/mimiciv_billing_code_metrics.py +127 -0
  197. helm/benchmark/metrics/nltk_helper.py +32 -0
  198. helm/benchmark/metrics/omni_math_metrics.py +44 -0
  199. helm/benchmark/metrics/openai_mrcr_metrics.py +52 -0
  200. helm/benchmark/metrics/output_processing_metric.py +60 -0
  201. helm/benchmark/metrics/output_processors.py +15 -0
  202. helm/benchmark/metrics/paraphrase_generation_metrics.py +5 -6
  203. helm/benchmark/metrics/prometheus_vision_critique_metrics.py +185 -0
  204. helm/benchmark/metrics/ranking_metrics.py +5 -5
  205. helm/benchmark/metrics/reference_metric.py +148 -0
  206. helm/benchmark/metrics/reka_vibe_critique_metrics.py +158 -0
  207. helm/benchmark/metrics/ruler_qa_metrics.py +34 -0
  208. helm/benchmark/metrics/safety_metrics.py +91 -0
  209. helm/benchmark/metrics/seahelm_metrics.py +201 -0
  210. helm/benchmark/metrics/seahelm_metrics_specs.py +10 -0
  211. helm/benchmark/metrics/spider_metrics.py +7 -0
  212. helm/benchmark/metrics/statistic.py +1 -1
  213. helm/benchmark/metrics/summac/model_summac.py +8 -11
  214. helm/benchmark/metrics/summarization_critique_metrics.py +4 -4
  215. helm/benchmark/metrics/summarization_metrics.py +150 -11
  216. helm/benchmark/metrics/test_bias_metrics.py +5 -1
  217. helm/benchmark/metrics/test_classification_metrics.py +145 -70
  218. helm/benchmark/metrics/test_disinformation_metrics.py +78 -0
  219. helm/benchmark/metrics/{test_basic_metrics.py → test_evaluate_reference_metrics.py} +20 -1
  220. helm/benchmark/metrics/test_metric.py +3 -3
  221. helm/benchmark/metrics/test_statistic.py +2 -2
  222. helm/benchmark/metrics/tokens/ai21_token_cost_estimator.py +1 -1
  223. helm/benchmark/metrics/tokens/auto_token_cost_estimator.py +6 -6
  224. helm/benchmark/metrics/tokens/cohere_token_cost_estimator.py +1 -1
  225. helm/benchmark/metrics/tokens/free_token_cost_estimator.py +1 -1
  226. helm/benchmark/metrics/tokens/gooseai_token_cost_estimator.py +11 -3
  227. helm/benchmark/metrics/tokens/openai_token_cost_estimator.py +1 -1
  228. helm/benchmark/metrics/tokens/test_ai21_token_cost_estimator.py +3 -3
  229. helm/benchmark/metrics/tokens/test_openai_token_cost_estimator.py +7 -7
  230. helm/benchmark/metrics/toxicity_metrics.py +37 -7
  231. helm/benchmark/metrics/toxicity_utils.py +23 -0
  232. helm/benchmark/metrics/ultra_suite_asr_classification_metrics.py +52 -0
  233. helm/benchmark/metrics/unitxt_metrics.py +107 -0
  234. helm/benchmark/metrics/vision_language/__init__.py +0 -0
  235. helm/benchmark/metrics/vision_language/emd_utils.py +347 -0
  236. helm/benchmark/metrics/vision_language/image_metrics.py +537 -0
  237. helm/benchmark/metrics/vision_language/image_utils.py +100 -0
  238. helm/benchmark/metrics/wildbench_metrics.py +54 -0
  239. helm/benchmark/model_deployment_registry.py +69 -5
  240. helm/benchmark/model_metadata_registry.py +58 -2
  241. helm/benchmark/multi_gpu_runner.py +133 -0
  242. helm/benchmark/presentation/contamination.py +3 -3
  243. helm/benchmark/presentation/create_plots.py +51 -20
  244. helm/benchmark/presentation/run_display.py +51 -12
  245. helm/benchmark/presentation/run_entry.py +2 -2
  246. helm/benchmark/presentation/schema.py +83 -66
  247. helm/benchmark/presentation/summarize.py +483 -388
  248. helm/benchmark/presentation/table.py +8 -8
  249. helm/benchmark/presentation/taxonomy_info.py +20 -0
  250. helm/benchmark/presentation/test_contamination.py +2 -2
  251. helm/benchmark/presentation/test_create_plots.py +4 -1
  252. helm/benchmark/presentation/test_run_entry.py +2 -2
  253. helm/benchmark/presentation/test_schema.py +11 -0
  254. helm/benchmark/presentation/test_summarize.py +148 -6
  255. helm/benchmark/presentation/torr_robustness_summarizer.py +178 -0
  256. helm/benchmark/reeval_run.py +202 -0
  257. helm/benchmark/reeval_runner.py +355 -0
  258. helm/benchmark/run.py +151 -87
  259. helm/benchmark/run_expander.py +418 -33
  260. helm/benchmark/run_spec.py +93 -0
  261. helm/benchmark/run_spec_factory.py +180 -0
  262. helm/benchmark/run_specs/__init__.py +0 -0
  263. helm/benchmark/run_specs/air_bench_run_specs.py +58 -0
  264. helm/benchmark/run_specs/arabic_run_specs.py +197 -0
  265. helm/benchmark/run_specs/audio_run_specs.py +657 -0
  266. helm/benchmark/run_specs/bluex_run_specs.py +40 -0
  267. helm/benchmark/run_specs/call_center_run_specs.py +201 -0
  268. helm/benchmark/run_specs/capabilities_run_specs.py +308 -0
  269. helm/benchmark/run_specs/classic_run_specs.py +1393 -0
  270. helm/benchmark/run_specs/cleva_run_specs.py +277 -0
  271. helm/benchmark/run_specs/codeinsights_run_specs.py +192 -0
  272. helm/benchmark/run_specs/decodingtrust_run_specs.py +316 -0
  273. helm/benchmark/run_specs/enem_challenge_specs.py +31 -0
  274. helm/benchmark/run_specs/enterprise_run_specs.py +280 -0
  275. helm/benchmark/run_specs/experimental_run_specs.py +224 -0
  276. helm/benchmark/run_specs/finance_run_specs.py +114 -0
  277. helm/benchmark/run_specs/healthqa_br_run_specs.py +40 -0
  278. helm/benchmark/run_specs/heim_run_specs.py +625 -0
  279. helm/benchmark/run_specs/imdb_ptbr_run_specs.py +30 -0
  280. helm/benchmark/run_specs/instruction_following_run_specs.py +129 -0
  281. helm/benchmark/run_specs/lite_run_specs.py +307 -0
  282. helm/benchmark/run_specs/lmkt_run_specs.py +144 -0
  283. helm/benchmark/run_specs/long_context_run_specs.py +188 -0
  284. helm/benchmark/run_specs/medhelm/__init__.py +0 -0
  285. helm/benchmark/run_specs/medhelm/benchmark_config.py +219 -0
  286. helm/benchmark/run_specs/medhelm_run_specs.py +1570 -0
  287. helm/benchmark/run_specs/melt_run_specs.py +783 -0
  288. helm/benchmark/run_specs/mmlu_clinical_afr_run_specs.py +49 -0
  289. helm/benchmark/run_specs/multilingual_run_specs.py +50 -0
  290. helm/benchmark/run_specs/oab_exams_specs.py +32 -0
  291. helm/benchmark/run_specs/safety_run_specs.py +191 -0
  292. helm/benchmark/run_specs/seahelm_run_specs.py +652 -0
  293. helm/benchmark/run_specs/simple_run_specs.py +104 -0
  294. helm/benchmark/run_specs/speech_disorder_audio_run_specs.py +167 -0
  295. helm/benchmark/run_specs/sql_run_specs.py +54 -0
  296. helm/benchmark/run_specs/tweetsentbr_run_specs.py +32 -0
  297. helm/benchmark/run_specs/unitxt_run_specs.py +51 -0
  298. helm/benchmark/run_specs/vlm_run_specs.py +1057 -0
  299. helm/benchmark/run_specs/winogrande_afr_run_specs.py +47 -0
  300. helm/benchmark/runner.py +63 -62
  301. helm/benchmark/runner_config_registry.py +21 -0
  302. helm/benchmark/scenarios/aci_bench_scenario.py +149 -0
  303. helm/benchmark/scenarios/air_bench_scenario.py +76 -0
  304. helm/benchmark/scenarios/alghafa_scenario.py +126 -0
  305. helm/benchmark/scenarios/alrage_scenario.py +54 -0
  306. helm/benchmark/scenarios/anthropic_hh_rlhf_scenario.py +27 -3
  307. helm/benchmark/scenarios/anthropic_red_team_scenario.py +82 -0
  308. helm/benchmark/scenarios/arabic_exams_scenario.py +114 -0
  309. helm/benchmark/scenarios/arabic_mmlu_scenario.py +82 -0
  310. helm/benchmark/scenarios/aratrust_scenario.py +95 -0
  311. helm/benchmark/scenarios/audio_language/__init__.py +0 -0
  312. helm/benchmark/scenarios/audio_language/air_bench_chat_scenario.py +130 -0
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  596. helm/benchmark/scenarios/vision_language/mscoco_categorization_scenario.py +117 -0
  597. helm/benchmark/scenarios/vision_language/msr_vtt_scenario.py +75 -0
  598. helm/benchmark/scenarios/vision_language/multipanelvqa_scenario.py +169 -0
  599. helm/benchmark/scenarios/vision_language/originality_scenario.py +35 -0
  600. helm/benchmark/scenarios/vision_language/pairs_scenario.py +247 -0
  601. helm/benchmark/scenarios/vision_language/pope_scenario.py +105 -0
  602. helm/benchmark/scenarios/vision_language/real_world_qa_scenario.py +57 -0
  603. helm/benchmark/scenarios/vision_language/seed_bench_scenario.py +131 -0
  604. helm/benchmark/scenarios/vision_language/unicorn_scenario.py +108 -0
  605. helm/benchmark/scenarios/vision_language/vibe_eval_scenario.py +98 -0
  606. helm/benchmark/scenarios/vision_language/viz_wiz_scenario.py +4 -5
  607. helm/benchmark/scenarios/vision_language/vqa_rad_scenario.py +88 -0
  608. helm/benchmark/scenarios/vision_language/vqa_scenario.py +8 -4
  609. helm/benchmark/scenarios/wikifact_scenario.py +31 -1
  610. helm/benchmark/scenarios/wikitext_103_scenario.py +1 -1
  611. helm/benchmark/scenarios/wildbench_scenario.py +101 -0
  612. helm/benchmark/scenarios/winogrande_afr_scenario.py +78 -0
  613. helm/benchmark/scenarios/wmt_14_scenario.py +33 -2
  614. helm/benchmark/scenarios/xstest_scenario.py +35 -0
  615. helm/benchmark/server.py +32 -2
  616. helm/benchmark/slurm_jobs.py +1 -2
  617. helm/benchmark/slurm_runner.py +78 -50
  618. helm/benchmark/static/schema_air_bench.yaml +3149 -0
  619. helm/benchmark/static/schema_arabic.yaml +271 -0
  620. helm/benchmark/static/schema_audio.yaml +763 -0
  621. helm/benchmark/static/schema_autobencher.yaml +150 -0
  622. helm/benchmark/static/schema_call_center.yaml +269 -0
  623. helm/benchmark/static/schema_capabilities.yaml +254 -0
  624. helm/benchmark/static/schema_classic.yaml +259 -1140
  625. helm/benchmark/static/schema_cleva.yaml +768 -0
  626. helm/benchmark/static/schema_czech_bank.yaml +148 -0
  627. helm/benchmark/static/schema_decodingtrust.yaml +444 -0
  628. helm/benchmark/static/schema_enem_challenge.yaml +146 -0
  629. helm/benchmark/static/schema_enterprise.yaml +319 -0
  630. helm/benchmark/static/schema_ewok.yaml +367 -0
  631. helm/benchmark/static/schema_finance.yaml +191 -0
  632. helm/benchmark/static/schema_heim.yaml +1389 -0
  633. helm/benchmark/static/schema_image2struct.yaml +588 -0
  634. helm/benchmark/static/schema_instruction_following.yaml +161 -0
  635. helm/benchmark/static/schema_legal.yaml +566 -0
  636. helm/benchmark/static/schema_lite.yaml +3 -286
  637. helm/benchmark/static/schema_long_context.yaml +282 -0
  638. helm/benchmark/static/schema_medhelm.yaml +1176 -0
  639. helm/benchmark/static/schema_melt.yaml +1257 -0
  640. helm/benchmark/static/schema_mmlu.yaml +1449 -0
  641. helm/benchmark/static/schema_mmlu_winogrande_afr.yaml +1045 -0
  642. helm/benchmark/static/schema_safety.yaml +283 -0
  643. helm/benchmark/static/schema_seahelm.yaml +723 -0
  644. helm/benchmark/static/schema_slp.yaml +219 -0
  645. helm/benchmark/static/schema_slphelm.yaml +162 -0
  646. helm/benchmark/static/schema_social_audio.yaml +224 -0
  647. helm/benchmark/static/schema_sql.yaml +171 -0
  648. helm/benchmark/static/schema_thai.yaml +244 -0
  649. helm/benchmark/static/schema_torr.yaml +474 -0
  650. helm/benchmark/static/schema_tweetsentbr.yaml +146 -0
  651. helm/benchmark/static/schema_unitxt.yaml +370 -0
  652. helm/benchmark/static/schema_vhelm.yaml +933 -0
  653. helm/benchmark/static/schema_vhelm_lite.yaml +109 -0
  654. helm/benchmark/static/schema_video.yaml +219 -0
  655. helm/benchmark/static_build/assets/air-overview-DpBbyagA.png +0 -0
  656. helm/benchmark/static_build/assets/audio-table-Dn5NMMeJ.png +0 -0
  657. helm/benchmark/static_build/assets/heim-logo-BJtQlEbV.png +0 -0
  658. helm/benchmark/static_build/assets/helm-safety-COfndXuS.png +0 -0
  659. helm/benchmark/static_build/assets/helmhero-D9TvmJsp.png +0 -0
  660. helm/benchmark/static_build/assets/index-oIeiQW2g.css +1 -0
  661. helm/benchmark/static_build/assets/index-qOFpOyHb.js +10 -0
  662. helm/benchmark/static_build/assets/medhelm-overview-CND0EIsy.png +0 -0
  663. helm/benchmark/static_build/assets/medhelm-v1-overview-Cu2tphBB.png +0 -0
  664. helm/benchmark/static_build/assets/overview-BwypNWnk.png +0 -0
  665. helm/benchmark/static_build/assets/process-flow-DWDJC733.png +0 -0
  666. helm/benchmark/static_build/assets/react-BteFIppM.js +85 -0
  667. helm/benchmark/static_build/assets/recharts-DxuQtTOs.js +97 -0
  668. helm/benchmark/static_build/assets/tremor-DR4fE7ko.js +10 -0
  669. helm/benchmark/static_build/assets/vhelm-aspects-NiDQofvP.png +0 -0
  670. helm/benchmark/static_build/assets/vhelm-framework-NxJE4fdA.png +0 -0
  671. helm/benchmark/static_build/assets/vhelm-model-ypCL5Yvq.png +0 -0
  672. helm/benchmark/static_build/config.js +4 -0
  673. helm/benchmark/static_build/index.html +19 -0
  674. helm/benchmark/test_data_preprocessor.py +3 -3
  675. helm/benchmark/test_run_expander.py +1 -1
  676. helm/benchmark/window_services/default_window_service.py +3 -45
  677. helm/benchmark/window_services/encoder_decoder_window_service.py +4 -15
  678. helm/benchmark/window_services/ice_window_service.py +1 -35
  679. helm/benchmark/window_services/image_generation/__init__.py +0 -0
  680. helm/benchmark/window_services/image_generation/clip_window_service.py +13 -0
  681. helm/benchmark/window_services/image_generation/lexica_search_window_service.py +9 -0
  682. helm/benchmark/window_services/image_generation/openai_dalle_window_service.py +9 -0
  683. helm/benchmark/window_services/image_generation/test_clip_window_service.py +29 -0
  684. helm/benchmark/window_services/image_generation/test_openai_dalle_window_service.py +30 -0
  685. helm/benchmark/window_services/local_window_service.py +22 -5
  686. helm/benchmark/window_services/test_anthropic_window_service.py +5 -4
  687. helm/benchmark/window_services/test_bloom_window_service.py +5 -4
  688. helm/benchmark/window_services/test_flan_t5_window_service.py +2 -1
  689. helm/benchmark/window_services/test_gpt2_window_service.py +9 -4
  690. helm/benchmark/window_services/test_gpt4_window_service.py +10 -4
  691. helm/benchmark/window_services/test_gptj_window_service.py +11 -5
  692. helm/benchmark/window_services/test_gptneox_window_service.py +6 -5
  693. helm/benchmark/window_services/test_openai_window_service.py +18 -12
  694. helm/benchmark/window_services/test_opt_window_service.py +6 -5
  695. helm/benchmark/window_services/test_palmyra_window_service.py +5 -4
  696. helm/benchmark/window_services/test_t0pp_window_service.py +5 -4
  697. helm/benchmark/window_services/test_t511b_window_service.py +5 -4
  698. helm/benchmark/window_services/test_ul2_window_service.py +5 -4
  699. helm/benchmark/window_services/test_utils.py +6 -6
  700. helm/benchmark/window_services/test_yalm_window_service.py +5 -4
  701. helm/benchmark/window_services/tokenizer_service.py +7 -13
  702. helm/benchmark/window_services/window_service.py +42 -0
  703. helm/benchmark/window_services/window_service_factory.py +4 -1
  704. helm/benchmark/window_services/yalm_window_service.py +1 -28
  705. helm/clients/__init__.py +0 -0
  706. helm/{proxy/clients → clients}/ai21_client.py +78 -12
  707. helm/clients/aleph_alpha_client.py +114 -0
  708. helm/{proxy/clients → clients}/anthropic_client.py +304 -21
  709. helm/clients/audio_language/__init__.py +0 -0
  710. helm/clients/audio_language/diva_llama_client.py +122 -0
  711. helm/clients/audio_language/llama_omni/arguments.py +61 -0
  712. helm/clients/audio_language/llama_omni/constants.py +9 -0
  713. helm/clients/audio_language/llama_omni/conversation.py +213 -0
  714. helm/clients/audio_language/llama_omni/model/__init__.py +0 -0
  715. helm/clients/audio_language/llama_omni/model/builder.py +88 -0
  716. helm/clients/audio_language/llama_omni/model/language_model/omni_speech2s_llama.py +190 -0
  717. helm/clients/audio_language/llama_omni/model/language_model/omni_speech_llama.py +118 -0
  718. helm/clients/audio_language/llama_omni/model/omni_speech_arch.py +249 -0
  719. helm/clients/audio_language/llama_omni/model/speech_encoder/builder.py +9 -0
  720. helm/clients/audio_language/llama_omni/model/speech_encoder/speech_encoder.py +27 -0
  721. helm/clients/audio_language/llama_omni/model/speech_generator/builder.py +9 -0
  722. helm/clients/audio_language/llama_omni/model/speech_generator/generation.py +622 -0
  723. helm/clients/audio_language/llama_omni/model/speech_generator/speech_generator.py +104 -0
  724. helm/clients/audio_language/llama_omni/model/speech_projector/builder.py +9 -0
  725. helm/clients/audio_language/llama_omni/model/speech_projector/speech_projector.py +27 -0
  726. helm/clients/audio_language/llama_omni/preprocess.py +295 -0
  727. helm/clients/audio_language/llama_omni/utils.py +202 -0
  728. helm/clients/audio_language/llama_omni_client.py +199 -0
  729. helm/clients/audio_language/qwen2_5_omni_client.py +210 -0
  730. helm/clients/audio_language/qwen2_audiolm_client.py +191 -0
  731. helm/clients/audio_language/qwen_audiolm_client.py +153 -0
  732. helm/clients/audio_language/qwen_omni/configuration_qwen2_5_omni.py +519 -0
  733. helm/clients/audio_language/qwen_omni/modeling_qwen2_5_omni.py +4308 -0
  734. helm/clients/audio_language/qwen_omni/processing_qwen2_5_omni.py +270 -0
  735. helm/clients/audio_language/qwen_omni/qwen2_5_omni_utils/__init__.py +0 -0
  736. helm/clients/audio_language/qwen_omni/qwen2_5_omni_utils/v2_5/__init__.py +8 -0
  737. helm/clients/audio_language/qwen_omni/qwen2_5_omni_utils/v2_5/audio_process.py +56 -0
  738. helm/clients/audio_language/qwen_omni/qwen2_5_omni_utils/v2_5/vision_process.py +380 -0
  739. helm/clients/audio_language/test.py +62 -0
  740. helm/{proxy/clients → clients}/auto_client.py +72 -31
  741. helm/clients/azure_openai_client.py +55 -0
  742. helm/clients/bedrock_client.py +381 -0
  743. helm/clients/bedrock_utils.py +105 -0
  744. helm/{proxy/clients → clients}/client.py +92 -17
  745. helm/clients/clip_score_client.py +49 -0
  746. helm/clients/clip_scorers/__init__.py +0 -0
  747. helm/clients/clip_scorers/base_clip_scorer.py +18 -0
  748. helm/clients/clip_scorers/clip_scorer.py +50 -0
  749. helm/clients/clip_scorers/multilingual_clip_scorer.py +50 -0
  750. helm/{proxy/clients → clients}/cohere_client.py +105 -14
  751. helm/clients/dspy_client.py +135 -0
  752. helm/clients/gcs_client.py +82 -0
  753. helm/{proxy/clients → clients}/google_client.py +8 -6
  754. helm/clients/google_translate_client.py +35 -0
  755. helm/clients/grok_client.py +36 -0
  756. helm/{proxy/clients → clients}/http_model_client.py +8 -8
  757. helm/{proxy/clients → clients}/huggingface_client.py +157 -86
  758. helm/clients/huggingface_pipeline_client.py +138 -0
  759. helm/clients/ibm_client.py +269 -0
  760. helm/clients/image_generation/__init__.py +0 -0
  761. helm/clients/image_generation/adobe_vision_client.py +80 -0
  762. helm/clients/image_generation/aleph_alpha_image_generation_client.py +100 -0
  763. helm/clients/image_generation/cogview2/__init__.py +0 -0
  764. helm/clients/image_generation/cogview2/coglm_strategy.py +96 -0
  765. helm/clients/image_generation/cogview2/coglm_utils.py +82 -0
  766. helm/clients/image_generation/cogview2/sr_pipeline/__init__.py +15 -0
  767. helm/clients/image_generation/cogview2/sr_pipeline/direct_sr.py +99 -0
  768. helm/clients/image_generation/cogview2/sr_pipeline/dsr_model.py +254 -0
  769. helm/clients/image_generation/cogview2/sr_pipeline/dsr_sampling.py +190 -0
  770. helm/clients/image_generation/cogview2/sr_pipeline/iterative_sr.py +144 -0
  771. helm/clients/image_generation/cogview2/sr_pipeline/itersr_model.py +269 -0
  772. helm/clients/image_generation/cogview2/sr_pipeline/itersr_sampling.py +120 -0
  773. helm/clients/image_generation/cogview2/sr_pipeline/sr_group.py +42 -0
  774. helm/clients/image_generation/cogview2_client.py +192 -0
  775. helm/clients/image_generation/dalle2_client.py +194 -0
  776. helm/clients/image_generation/dalle3_client.py +108 -0
  777. helm/clients/image_generation/dalle_mini/__init__.py +3 -0
  778. helm/clients/image_generation/dalle_mini/data.py +442 -0
  779. helm/clients/image_generation/dalle_mini/model/__init__.py +5 -0
  780. helm/clients/image_generation/dalle_mini/model/configuration.py +175 -0
  781. helm/clients/image_generation/dalle_mini/model/modeling.py +1834 -0
  782. helm/clients/image_generation/dalle_mini/model/partitions.py +84 -0
  783. helm/clients/image_generation/dalle_mini/model/processor.py +63 -0
  784. helm/clients/image_generation/dalle_mini/model/text.py +251 -0
  785. helm/clients/image_generation/dalle_mini/model/tokenizer.py +9 -0
  786. helm/clients/image_generation/dalle_mini/model/utils.py +29 -0
  787. helm/clients/image_generation/dalle_mini/vqgan_jax/__init__.py +1 -0
  788. helm/clients/image_generation/dalle_mini/vqgan_jax/configuration_vqgan.py +40 -0
  789. helm/clients/image_generation/dalle_mini/vqgan_jax/convert_pt_model_to_jax.py +107 -0
  790. helm/clients/image_generation/dalle_mini/vqgan_jax/modeling_flax_vqgan.py +610 -0
  791. helm/clients/image_generation/dalle_mini_client.py +191 -0
  792. helm/clients/image_generation/deep_floyd_client.py +80 -0
  793. helm/clients/image_generation/huggingface_diffusers_client.py +250 -0
  794. helm/clients/image_generation/image_generation_client_utils.py +9 -0
  795. helm/clients/image_generation/lexica_client.py +88 -0
  796. helm/clients/image_generation/mindalle/__init__.py +0 -0
  797. helm/clients/image_generation/mindalle/models/__init__.py +216 -0
  798. helm/clients/image_generation/mindalle/models/stage1/__init__.py +0 -0
  799. helm/clients/image_generation/mindalle/models/stage1/layers.py +312 -0
  800. helm/clients/image_generation/mindalle/models/stage1/vqgan.py +103 -0
  801. helm/clients/image_generation/mindalle/models/stage2/__init__.py +0 -0
  802. helm/clients/image_generation/mindalle/models/stage2/layers.py +144 -0
  803. helm/clients/image_generation/mindalle/models/stage2/transformer.py +268 -0
  804. helm/clients/image_generation/mindalle/models/tokenizer.py +30 -0
  805. helm/clients/image_generation/mindalle/utils/__init__.py +3 -0
  806. helm/clients/image_generation/mindalle/utils/config.py +129 -0
  807. helm/clients/image_generation/mindalle/utils/sampling.py +149 -0
  808. helm/clients/image_generation/mindalle/utils/utils.py +89 -0
  809. helm/clients/image_generation/mindalle_client.py +116 -0
  810. helm/clients/image_generation/nudity_check_client.py +64 -0
  811. helm/clients/image_generation/together_image_generation_client.py +113 -0
  812. helm/{proxy/clients → clients}/lit_gpt_client.py +6 -6
  813. helm/{proxy/clients → clients}/megatron_client.py +7 -5
  814. helm/clients/mistral_client.py +180 -0
  815. helm/clients/moderation_api_client.py +111 -0
  816. helm/clients/nvidia_nim_client.py +32 -0
  817. helm/clients/open_lm_client.py +43 -0
  818. helm/clients/openai_client.py +604 -0
  819. helm/clients/openai_responses_client.py +200 -0
  820. helm/clients/openrouter_client.py +31 -0
  821. helm/{proxy/clients → clients}/palmyra_client.py +31 -14
  822. helm/{proxy/clients → clients}/perspective_api_client.py +18 -14
  823. helm/clients/reka_client.py +190 -0
  824. helm/clients/simple_client.py +64 -0
  825. helm/clients/stanfordhealthcare_azure_openai_client.py +58 -0
  826. helm/clients/stanfordhealthcare_claude_client.py +31 -0
  827. helm/clients/stanfordhealthcare_google_client.py +43 -0
  828. helm/clients/stanfordhealthcare_http_model_client.py +95 -0
  829. helm/clients/stanfordhealthcare_openai_client.py +62 -0
  830. helm/clients/stanfordhealthcare_shc_openai_client.py +42 -0
  831. helm/{proxy/clients → clients}/test_auto_client.py +13 -15
  832. helm/clients/test_client.py +98 -0
  833. helm/{proxy/clients → clients}/test_huggingface_client.py +31 -16
  834. helm/clients/test_openrouter_client.py +69 -0
  835. helm/clients/test_simple_client.py +19 -0
  836. helm/clients/test_together_client.py +184 -0
  837. helm/clients/together_client.py +599 -0
  838. helm/clients/upstage_client.py +23 -0
  839. helm/clients/vertexai_client.py +488 -0
  840. helm/clients/vision_language/__init__.py +0 -0
  841. helm/clients/vision_language/huggingface_vision2seq_client.py +148 -0
  842. helm/clients/vision_language/huggingface_vlm_client.py +114 -0
  843. helm/{proxy/clients → clients}/vision_language/idefics_client.py +61 -51
  844. helm/clients/vision_language/open_flamingo/__init__.py +2 -0
  845. helm/clients/vision_language/open_flamingo/src/__init__.py +0 -0
  846. helm/clients/vision_language/open_flamingo/src/factory.py +147 -0
  847. helm/clients/vision_language/open_flamingo/src/flamingo.py +337 -0
  848. helm/clients/vision_language/open_flamingo/src/flamingo_lm.py +155 -0
  849. helm/clients/vision_language/open_flamingo/src/helpers.py +267 -0
  850. helm/clients/vision_language/open_flamingo/src/utils.py +47 -0
  851. helm/clients/vision_language/open_flamingo_client.py +155 -0
  852. helm/clients/vision_language/paligemma_client.py +147 -0
  853. helm/clients/vision_language/palmyra_vision_client.py +101 -0
  854. helm/clients/vision_language/qwen2_vlm_client.py +189 -0
  855. helm/clients/vision_language/qwen_vlm_client.py +174 -0
  856. helm/clients/vllm_client.py +80 -0
  857. helm/clients/vllm_granite_thinking_client.py +56 -0
  858. helm/clients/writer_client.py +105 -0
  859. helm/clients/yi_client.py +28 -0
  860. helm/common/audio_utils.py +111 -0
  861. helm/common/cache.py +23 -33
  862. helm/common/cache_backend_config.py +47 -0
  863. helm/common/clip_score_request.py +41 -0
  864. helm/common/context.py +80 -0
  865. helm/common/credentials_utils.py +5 -5
  866. helm/common/critique_request.py +10 -2
  867. helm/common/file_caches/__init__.py +0 -0
  868. helm/common/file_caches/file_cache.py +16 -0
  869. helm/common/file_caches/local_file_cache.py +61 -0
  870. helm/common/file_caches/test_local_file_cache.py +25 -0
  871. helm/common/file_upload_request.py +27 -0
  872. helm/common/general.py +10 -3
  873. helm/common/hierarchical_logger.py +124 -12
  874. helm/common/image_generation_parameters.py +25 -0
  875. helm/common/images_utils.py +60 -5
  876. helm/common/key_value_store.py +41 -10
  877. helm/common/local_context.py +140 -0
  878. helm/common/media_object.py +14 -1
  879. helm/common/moderations_api_request.py +71 -0
  880. helm/common/mongo_key_value_store.py +8 -7
  881. helm/common/multimodal_request_utils.py +57 -0
  882. helm/common/nudity_check_request.py +29 -0
  883. helm/common/object_spec.py +23 -8
  884. helm/common/optional_dependencies.py +1 -1
  885. helm/common/reeval_parameters.py +12 -0
  886. helm/common/remote_context.py +61 -0
  887. helm/common/request.py +45 -19
  888. helm/common/response_format.py +18 -0
  889. helm/common/test_cache.py +1 -48
  890. helm/common/test_general.py +10 -0
  891. helm/common/test_logging.py +94 -0
  892. helm/common/test_media_object.py +1 -1
  893. helm/common/tokenization_request.py +1 -10
  894. helm/config/model_deployments.yaml +4713 -1005
  895. helm/config/model_metadata.yaml +4045 -255
  896. helm/config/tokenizer_configs.yaml +1091 -50
  897. helm/proxy/accounts.py +31 -4
  898. helm/proxy/cli.py +6 -4
  899. helm/proxy/critique/mechanical_turk_critique_importer.py +3 -0
  900. helm/proxy/critique/mechanical_turk_utils.py +1 -1
  901. helm/proxy/critique/model_critique_client.py +40 -10
  902. helm/proxy/example_queries.py +33 -28
  903. helm/proxy/retry.py +5 -0
  904. helm/proxy/server.py +82 -18
  905. helm/proxy/services/remote_service.py +32 -7
  906. helm/proxy/services/server_service.py +71 -69
  907. helm/proxy/services/service.py +30 -6
  908. helm/proxy/services/test_remote_service.py +6 -5
  909. helm/proxy/services/test_service.py +1 -13
  910. helm/proxy/static/help.html +99 -0
  911. helm/proxy/static/index.css +61 -0
  912. helm/proxy/static/index.html +40 -0
  913. helm/proxy/static/index.js +462 -0
  914. helm/proxy/test_accounts.py +32 -0
  915. helm/proxy/test_retry.py +1 -1
  916. helm/proxy/token_counters/auto_token_counter.py +37 -37
  917. helm/proxy/token_counters/test_auto_token_counter.py +164 -0
  918. helm/proxy/token_counters/token_counter.py +3 -5
  919. helm/tokenizers/__init__.py +0 -0
  920. helm/tokenizers/ai21_tokenizer.py +52 -0
  921. helm/{proxy/tokenizers → tokenizers}/aleph_alpha_tokenizer.py +1 -1
  922. helm/{proxy/tokenizers → tokenizers}/auto_tokenizer.py +9 -12
  923. helm/{proxy/tokenizers → tokenizers}/caching_tokenizer.py +2 -30
  924. helm/tokenizers/cohere_tokenizer.py +50 -0
  925. helm/tokenizers/grok_tokenizer.py +55 -0
  926. helm/{proxy/tokenizers → tokenizers}/http_model_tokenizer.py +4 -4
  927. helm/{proxy/tokenizers → tokenizers}/huggingface_tokenizer.py +44 -41
  928. helm/{proxy/tokenizers → tokenizers}/lit_gpt_tokenizer.py +1 -1
  929. helm/tokenizers/simple_tokenizer.py +33 -0
  930. helm/tokenizers/test_ai21_tokenizer.py +48 -0
  931. helm/{proxy/tokenizers → tokenizers}/test_anthropic_tokenizer.py +6 -2
  932. helm/tokenizers/test_cohere_tokenizer.py +39 -0
  933. helm/tokenizers/test_grok_tokenizer.py +33 -0
  934. helm/{proxy/tokenizers → tokenizers}/test_huggingface_tokenizer.py +9 -2
  935. helm/tokenizers/test_simple_tokenizer.py +33 -0
  936. helm/{proxy/tokenizers → tokenizers}/test_yalm_tokenizer.py +1 -1
  937. helm/{proxy/tokenizers → tokenizers}/tiktoken_tokenizer.py +1 -1
  938. helm/{proxy/tokenizers → tokenizers}/tokenizer.py +3 -1
  939. helm/{proxy/tokenizers → tokenizers}/vertexai_tokenizer.py +1 -1
  940. helm/{proxy/tokenizers → tokenizers}/yalm_tokenizer.py +8 -6
  941. helm/tokenizers/yalm_tokenizer_data/__init__.py +0 -0
  942. helm/{proxy/tokenizers → tokenizers}/yalm_tokenizer_data/test_yalm_tokenizer.py +1 -1
  943. helm/tokenizers/yalm_tokenizer_data/voc_100b.sp +0 -0
  944. helm/{proxy/tokenizers → tokenizers}/yalm_tokenizer_data/yalm_tokenizer.py +1 -1
  945. crfm_helm-0.4.0.dist-info/METADATA +0 -264
  946. crfm_helm-0.4.0.dist-info/RECORD +0 -397
  947. helm/benchmark/data_overlap/data_overlap_spec.py +0 -86
  948. helm/benchmark/data_overlap/export_scenario_text.py +0 -119
  949. helm/benchmark/data_overlap/light_scenario.py +0 -60
  950. helm/benchmark/metrics/numeracy_metrics.py +0 -72
  951. helm/benchmark/metrics/test_numeracy_metrics.py +0 -95
  952. helm/benchmark/run_specs.py +0 -2762
  953. helm/benchmark/scenarios/numeracy_scenario.py +0 -784
  954. helm/benchmark/static/benchmarking.css +0 -156
  955. helm/benchmark/static/benchmarking.js +0 -1705
  956. helm/benchmark/static/config.js +0 -3
  957. helm/benchmark/static/images/helm-logo.png +0 -0
  958. helm/benchmark/static/images/language-model-helm.png +0 -0
  959. helm/benchmark/static/images/organizations/ai21.png +0 -0
  960. helm/benchmark/static/images/organizations/anthropic.png +0 -0
  961. helm/benchmark/static/images/organizations/bigscience.png +0 -0
  962. helm/benchmark/static/images/organizations/cohere.png +0 -0
  963. helm/benchmark/static/images/organizations/eleutherai.png +0 -0
  964. helm/benchmark/static/images/organizations/google.png +0 -0
  965. helm/benchmark/static/images/organizations/meta.png +0 -0
  966. helm/benchmark/static/images/organizations/microsoft.png +0 -0
  967. helm/benchmark/static/images/organizations/nvidia.png +0 -0
  968. helm/benchmark/static/images/organizations/openai.png +0 -0
  969. helm/benchmark/static/images/organizations/together.png +0 -0
  970. helm/benchmark/static/images/organizations/tsinghua-keg.png +0 -0
  971. helm/benchmark/static/images/organizations/yandex.png +0 -0
  972. helm/benchmark/static/images/scenarios-by-metrics.png +0 -0
  973. helm/benchmark/static/images/taxonomy-scenarios.png +0 -0
  974. helm/benchmark/static/index.html +0 -68
  975. helm/benchmark/static/json-urls.js +0 -69
  976. helm/benchmark/static/plot-captions.js +0 -27
  977. helm/benchmark/static/utils.js +0 -285
  978. helm/benchmark/test_model_deployment_definition.py +0 -92
  979. helm/benchmark/test_model_properties.py +0 -1570
  980. helm/benchmark/vlm_run_specs.py +0 -97
  981. helm/benchmark/window_services/ai21_window_service.py +0 -258
  982. helm/benchmark/window_services/cohere_window_service.py +0 -163
  983. helm/benchmark/window_services/flan_t5_window_service.py +0 -29
  984. helm/benchmark/window_services/gpt2_window_service.py +0 -32
  985. helm/benchmark/window_services/huggingface_window_service.py +0 -60
  986. helm/benchmark/window_services/t0pp_window_service.py +0 -35
  987. helm/benchmark/window_services/t511b_window_service.py +0 -30
  988. helm/benchmark/window_services/test_ai21_window_service.py +0 -163
  989. helm/benchmark/window_services/test_cohere_window_service.py +0 -74
  990. helm/benchmark/window_services/test_cohere_window_service_utils.py +0 -8328
  991. helm/benchmark/window_services/test_ice_window_service.py +0 -326
  992. helm/benchmark/window_services/test_mt_nlg_window_service.py +0 -48
  993. helm/benchmark/window_services/ul2_window_service.py +0 -30
  994. helm/benchmark/window_services/wider_ai21_window_service.py +0 -24
  995. helm/common/cache_utils.py +0 -14
  996. helm/proxy/clients/aleph_alpha_client.py +0 -95
  997. helm/proxy/clients/goose_ai_client.py +0 -99
  998. helm/proxy/clients/microsoft_client.py +0 -180
  999. helm/proxy/clients/openai_client.py +0 -206
  1000. helm/proxy/clients/simple_client.py +0 -60
  1001. helm/proxy/clients/test_client.py +0 -49
  1002. helm/proxy/clients/test_together_client.py +0 -97
  1003. helm/proxy/clients/together_client.py +0 -334
  1004. helm/proxy/clients/vertexai_client.py +0 -115
  1005. helm/proxy/token_counters/ai21_token_counter.py +0 -20
  1006. helm/proxy/token_counters/cohere_token_counter.py +0 -13
  1007. helm/proxy/token_counters/free_token_counter.py +0 -12
  1008. helm/proxy/token_counters/gooseai_token_counter.py +0 -24
  1009. helm/proxy/token_counters/openai_token_counter.py +0 -22
  1010. helm/proxy/token_counters/test_ai21_token_counter.py +0 -88
  1011. helm/proxy/token_counters/test_openai_token_counter.py +0 -81
  1012. helm/proxy/tokenizers/ai21_tokenizer.py +0 -60
  1013. helm/proxy/tokenizers/anthropic_tokenizer.py +0 -52
  1014. helm/proxy/tokenizers/cohere_tokenizer.py +0 -83
  1015. helm/proxy/tokenizers/ice_tokenizer.py +0 -30
  1016. helm/proxy/tokenizers/simple_tokenizer.py +0 -32
  1017. helm/proxy/tokenizers/test_ice_tokenizer.py +0 -57
  1018. {crfm_helm-0.4.0.dist-info → crfm_helm-0.5.10.dist-info}/entry_points.txt +0 -0
  1019. {crfm_helm-0.4.0.dist-info → crfm_helm-0.5.10.dist-info/licenses}/LICENSE +0 -0
  1020. {crfm_helm-0.4.0.dist-info → crfm_helm-0.5.10.dist-info}/top_level.txt +0 -0
  1021. /helm/benchmark/{data_overlap → annotation}/__init__.py +0 -0
  1022. /helm/{proxy/clients → benchmark/annotation/image2struct}/__init__.py +0 -0
  1023. /helm/{proxy/clients/vision_language → benchmark/metrics/ifeval}/__init__.py +0 -0
  1024. /helm/{proxy/tokenizers → benchmark/metrics/image_generation}/__init__.py +0 -0
  1025. /helm/{proxy/tokenizers/yalm_tokenizer_data → benchmark/metrics/image_generation/detectors}/__init__.py +0 -0
  1026. /helm/benchmark/{static/images/crfm-logo.png → static_build/assets/crfm-logo-Du4T1uWZ.png} +0 -0
  1027. /helm/benchmark/{static/images/helm-logo-simple.png → static_build/assets/helm-logo-simple-DzOhNN41.png} +0 -0
  1028. /helm/{proxy/clients → clients}/ai21_utils.py +0 -0
  1029. /helm/{proxy/clients → clients}/cohere_utils.py +0 -0
  1030. /helm/{proxy/clients → clients}/lit_gpt_generate.py +0 -0
  1031. /helm/{proxy/clients → clients}/toxicity_classifier_client.py +0 -0
  1032. /helm/{benchmark → proxy}/static/general.js +0 -0
  1033. /helm/{benchmark → proxy}/static/info-icon.png +0 -0
@@ -0,0 +1,164 @@
1
+ import os
2
+ import requests
3
+ from typing import List
4
+ from helm.benchmark.presentation.taxonomy_info import TaxonomyInfo
5
+ from helm.benchmark.scenarios.scenario import (
6
+ Scenario,
7
+ Instance,
8
+ Reference,
9
+ CORRECT_TAG,
10
+ TEST_SPLIT,
11
+ Input,
12
+ Output,
13
+ ScenarioMetadata,
14
+ )
15
+ from helm.common.general import ensure_directory_exists
16
+
17
+
18
+ class MTSamplesReplicateScenario(Scenario):
19
+ """
20
+ MTSamples.com is designed to give you access to a big collection of transcribed medical reports.
21
+ These samples can be used by learning, as well as working medical transcriptionists for their daily
22
+ transcription needs. We present the model with patient information and request it to generate a corresponding
23
+ treatment plan.
24
+
25
+ Sample Synthetic Prompt:
26
+ Given various information about a patient, return a reasonable treatment plan for the patient.
27
+
28
+ - Extracts `PLAN`, `SUMMARY`, or `FINDINGS` as the reference (PLAN preferred).
29
+ - Removes `PLAN` from the input text but keeps other sections.
30
+ - Ignores files that do not contain any of these reference sections.
31
+ """
32
+
33
+ GIT_HASH = "ebc104a4f96c5b7602242f301e081e9934a23344"
34
+ API_BASE_URL = (
35
+ f"https://api.github.com/repos/raulista1997/benchmarkdata/contents/mtsamples_processed?ref={GIT_HASH}"
36
+ )
37
+ RAW_BASE_URL = f"https://raw.githubusercontent.com/raulista1997/benchmarkdata/{GIT_HASH}/mtsamples_processed/"
38
+
39
+ name = "mtsamples_replicate"
40
+ description = (
41
+ "MTSamples Replicate is a benchmark that provides transcribed medical reports"
42
+ "from various specialties. It is used to evaluate a model's ability to generate clinically"
43
+ "appropriate treatment plans based on unstructured patient documentation"
44
+ )
45
+ tags = ["medical", "transcription", "plan_generation"]
46
+
47
+ def fetch_file_list(self) -> List[str]:
48
+ """
49
+ Uses the GitHub API to fetch the list of `.txt` files at a specific commit.
50
+ """
51
+ response = requests.get(self.API_BASE_URL)
52
+ if response.status_code != 200:
53
+ raise Exception(f"Failed to fetch file list from GitHub API: {response.text}")
54
+
55
+ files = response.json()
56
+ return [f["name"] for f in files if f["name"].endswith(".txt")]
57
+
58
+ def download_file(self, file_name: str, output_dir: str) -> str:
59
+ """
60
+ Downloads a text file from GitHub and saves it locally.
61
+ """
62
+ file_url = self.RAW_BASE_URL + file_name
63
+ file_path = os.path.join(output_dir, file_name)
64
+
65
+ if not os.path.exists(file_path):
66
+ response = requests.get(file_url)
67
+ if response.status_code != 200:
68
+ raise Exception(f"Failed to download {file_url}")
69
+ with open(file_path, "w", encoding="utf-8") as f:
70
+ f.write(response.text)
71
+
72
+ return file_path
73
+
74
+ def extract_sections(self, text: str) -> tuple:
75
+ """
76
+ Extracts `PLAN`, `SUMMARY`, and `FINDINGS` sections from the text.
77
+ Returns (plan, summary, findings) as a tuple, ensuring uppercase detection.
78
+ """
79
+ plan, summary, findings = None, None, None
80
+ text_upper = text.upper()
81
+
82
+ if "PLAN:" in text_upper:
83
+ plan = text.split("PLAN:")[1].split("\n", 1)[0].strip()
84
+
85
+ if "SUMMARY:" in text_upper:
86
+ summary = text.split("SUMMARY:")[1].split("\n", 1)[0].strip()
87
+
88
+ if "FINDINGS:" in text_upper:
89
+ findings = text.split("FINDINGS:")[1].split("\n", 1)[0].strip()
90
+
91
+ return plan, summary, findings
92
+
93
+ def remove_plan_section(self, text: str) -> str:
94
+ """
95
+ Removes `PLAN:` section from the input text while keeping the rest.
96
+ """
97
+ sections = ["PLAN:"]
98
+ for section in sections:
99
+ if section in text:
100
+ text = text.split(section)[0].strip() # Keep content before PLAN
101
+ return text
102
+
103
+ def get_instances(self, output_path: str) -> List[Instance]:
104
+ """
105
+ Downloads, processes, and converts MTSamples data into HELM format.
106
+ """
107
+ ensure_directory_exists(output_path)
108
+
109
+ # Fetch list of available files from GitHub
110
+ file_list = self.fetch_file_list()
111
+
112
+ instances = []
113
+ for file_name in file_list:
114
+ try:
115
+ # Download the text file
116
+ file_path = self.download_file(file_name, output_path)
117
+
118
+ # Read content
119
+ with open(file_path, "r", encoding="utf-8") as f:
120
+ text_content = f.read().strip()
121
+
122
+ # Extract structured sections
123
+ plan, summary, findings = self.extract_sections(text_content)
124
+
125
+ # Use plan > summary > findings as reference text
126
+ reference_text = plan or summary or findings
127
+ if not reference_text:
128
+ continue # Ignore notes with no reference section
129
+
130
+ # Remove PLAN section from input
131
+ cleaned_text = self.remove_plan_section(text_content)
132
+
133
+ # Create HELM instance
134
+ instances.append(
135
+ Instance(
136
+ input=Input(text=cleaned_text), # Processed text without PLAN
137
+ references=[Reference(Output(text=reference_text), tags=[CORRECT_TAG])],
138
+ split=TEST_SPLIT,
139
+ )
140
+ )
141
+ except Exception as e:
142
+ print(f"Error processing {file_name}: {e}")
143
+
144
+ return instances
145
+
146
+ def get_metadata(self):
147
+ return ScenarioMetadata(
148
+ name="mtsamples_replicate",
149
+ display_name="MTSamples",
150
+ short_display_name="MTSamples",
151
+ description="MTSamples Replicate is a benchmark that provides transcribed medical reports "
152
+ "from various specialties. It is used to evaluate a model's ability to generate "
153
+ "clinically appropriate treatment plans based on unstructured patient "
154
+ "documentation [(MTSamples, 2025)](https://mtsamples.com).",
155
+ taxonomy=TaxonomyInfo(
156
+ task="Text generation",
157
+ what="Generate treatment plans based on clinical notes",
158
+ when="Post-diagnosis",
159
+ who="Clinician",
160
+ language="English",
161
+ ),
162
+ main_metric="mtsamples_replicate_accuracy",
163
+ main_split="test",
164
+ )
@@ -0,0 +1,297 @@
1
+ import os
2
+ import re
3
+
4
+ from typing import Any, Dict, List, Tuple, Optional
5
+ import xml.etree.ElementTree as ET
6
+
7
+ from helm.benchmark.presentation.taxonomy_info import TaxonomyInfo
8
+ from helm.common.general import ensure_directory_exists
9
+ from helm.benchmark.scenarios.scenario import (
10
+ TEST_SPLIT,
11
+ TRAIN_SPLIT,
12
+ Input,
13
+ Scenario,
14
+ Instance,
15
+ CORRECT_TAG,
16
+ Reference,
17
+ Output,
18
+ ScenarioMetadata,
19
+ )
20
+
21
+ ORIGINAL_DEFINITIONS = {
22
+ "ABDOMINAL": "History of intra-abdominal surgery, small or large intestine resection, or small bowel obstruction",
23
+ "ADVANCED-CAD": "Advanced cardiovascular disease (CAD). For the purposes of this annotation, we define “advanced” \
24
+ as having 2 or more of the following: • Taking 2 or more medications to treat CAD • \
25
+ History of myocardial infarction (MI) • Currently experiencing angina • Ischemia, past or present",
26
+ "ALCOHOL-ABUSE": "Current alcohol use over weekly recommended limits",
27
+ "ASP-FOR-MI": "Use of aspirin for preventing myocardial infarction (MI)",
28
+ "CREATININE": "Serum creatinine level above the upper normal limit",
29
+ "DIETSUPP-2MOS": "Taken a dietary supplement (excluding vitamin D) in the past 2 months",
30
+ "DRUG-ABUSE": "Current or past history of drug abuse",
31
+ "ENGLISH": "Patient must speak English",
32
+ "HBA1C": "Any hemoglobin A1c (HbA1c) value between 6.5% and 9.5%",
33
+ "KETO-1YR": "Diagnosis of ketoacidosis within the past year",
34
+ "MAJOR-DIABETES": "Major diabetes-related complication. For the purposes of this annotation, we define \
35
+ “major complication” (as opposed to “minor complication”) as any of the following that are a result of \
36
+ (or strongly correlated with) uncontrolled diabetes: • Amputation • Kidney damage • Skin conditions • \
37
+ Retinopathy • nephropathy • neuropathy",
38
+ "MAKES-DECISIONS": "Patient must make their own medical decisions",
39
+ "MI-6MOS": "Myocardial infarction (MI) within the past 6 months",
40
+ }
41
+ # Custom definitions for better prompts
42
+ LONG_DEFINITIONS = {
43
+ "ABDOMINAL": "History of intra-abdominal surgery. This could include any form of intra-abdominal surgery, \
44
+ including but not limited to small/large intestine resection or small bowel obstruction",
45
+ "ADVANCED-CAD": "Advanced cardiovascular disease (CAD). For the purposes of this annotation, we define \
46
+ “advanced” as having 2 or more of the following: (a) Taking 2 or more medications to treat CAD (b) History \
47
+ of myocardial infarction (MI) (c) Currently experiencing angina (d) Ischemia, past or present. \
48
+ The patient must have at least 2 of these categories (a,b,c,d) to meet this criterion, otherwise the patient \
49
+ does not meet this criterion. For ADVANCED-CAD, be strict in your evaluation of the patient -- if they just \
50
+ have cardiovascular disease, then they do not meet this criterion.",
51
+ "ALCOHOL-ABUSE": "Current alcohol use over weekly recommended limits",
52
+ "ASP-FOR-MI": "Use of aspirin for preventing myocardial infarction (MI)..",
53
+ "CREATININE": "Serum creatinine level above the upper normal limit",
54
+ "DIETSUPP-2MOS": "Consumption of a dietary supplement (excluding vitamin D) in the past 2 months. To assess \
55
+ this criterion, go through the list of medications_and_supplements taken from the note. If a substance could \
56
+ potentially be used as a dietary supplement (i.e. it is commonly used as a dietary supplement, even if it \
57
+ is not explicitly stated as being used as a dietary supplement), then the patient meets this criterion. \
58
+ Be lenient and broad in what is considered a dietary supplement. For example, a 'multivitamin' and \
59
+ 'calcium carbonate' should always be considered a dietary supplement if they are included in this list.",
60
+ "DRUG-ABUSE": "Current or past history of drug abuse",
61
+ "ENGLISH": "Patient speaks English. Assume that the patient speaks English, unless otherwise explicitly noted. \
62
+ If the patient's language is not mentioned in the note, then assume they speak English and thus meet \
63
+ this criteria.",
64
+ "HBA1C": "Any hemoglobin A1c (HbA1c) value between 6.5% and 9.5%",
65
+ "KETO-1YR": "Diagnosis of ketoacidosis within the past year",
66
+ "MAJOR-DIABETES": "Major diabetes-related complication. Examples of “major complication” (as opposed to \
67
+ “minor complication”) include, but are not limited to, any of the following that are a result of (or \
68
+ strongly correlated with) uncontrolled diabetes: • Amputation • Kidney damage • Skin conditions • Retinopathy \
69
+ • nephropathy • neuropathy. Additionally, if multiple conditions together imply a severe case of diabetes, \
70
+ then count that as a major complication.",
71
+ "MAKES-DECISIONS": "Patient must make their own medical decisions. Assume that the patient makes their own \
72
+ medical decisions, unless otherwise explicitly noted. There is no information provided about the \
73
+ patient's ability to make their own medical decisions, then assume they do make their own decisions and \
74
+ therefore meet this criteria.\"",
75
+ "MI-6MOS": "Myocardial infarction (MI) within the past 6 months",
76
+ }
77
+
78
+
79
+ class XMLDataLoader:
80
+ def __init__(
81
+ self, path_to_folder: str, is_convert_to_numbers=True, is_split_text=True, is_remove_excessive_new_lines=True
82
+ ):
83
+ self.path_to_folder = path_to_folder
84
+ self.is_convert_to_numbers = is_convert_to_numbers
85
+ self.is_split_text = is_split_text
86
+ self.is_remove_excessive_new_lines = is_remove_excessive_new_lines
87
+
88
+ def load_data(self) -> List[Dict[str, Any]]:
89
+ """Main function: Data loader for the XML files"""
90
+ data = []
91
+ file_names = os.listdir(self.path_to_folder)
92
+ file_names = sorted([file for file in file_names if file.endswith(".xml")])
93
+ for file_name in file_names:
94
+ file_path = os.path.join(self.path_to_folder, file_name)
95
+ text, labels = self.parse_xml(file_path)
96
+ data.append({"patient_id": file_name.replace(".xml", ""), "ehr": text, "labels": labels})
97
+
98
+ return data
99
+
100
+ @staticmethod
101
+ def get_date_of_note(patient: Dict[str, Any], note_idx: int) -> Optional[str]:
102
+ """Get date of note for patient"""
103
+ assert note_idx <= len(patient["ehr"]), f"{note_idx} out of bounds for {patient['patient_id']}"
104
+ note: str = patient["ehr"][note_idx]
105
+ match = re.search(r"Record date: (\d{4}-\d{2}-\d{2})", note)
106
+ date = match.group(1) if match else None
107
+ if not date:
108
+ print(f"ERROR - Could not find the date for patient {patient['patient_id']}")
109
+ return date
110
+
111
+ @staticmethod
112
+ def get_current_date_for_patient(patient: Dict[str, Any]) -> Optional[str]:
113
+ """Get most recent date visible in files for a given patient"""
114
+ most_recent_date = None
115
+ for note in patient["ehr"]:
116
+ match = re.search(r"Record date: (\d{4}-\d{2}-\d{2})", note)
117
+ most_recent_date = match.group(1) if match else most_recent_date
118
+ if not most_recent_date:
119
+ print(f"ERROR - Could not find the date for patient {patient['patient_id']}")
120
+ return most_recent_date
121
+
122
+ def parse_xml(self, XML_file) -> Tuple[List[str], Dict[str, str]]:
123
+ tree = ET.parse(XML_file)
124
+ root = tree.getroot()
125
+ text_content = ""
126
+ result_text: List[str] = []
127
+ tags = {}
128
+ for elem in root.iter():
129
+ if elem.tag == "TEXT":
130
+ text_content = elem.text if elem.text else ""
131
+ if self.is_remove_excessive_new_lines:
132
+ text_content = self.remove_excessive_newlines(text_content)
133
+ if self.is_split_text:
134
+ result_text = self.split_text(text_content)
135
+ else:
136
+ result_text = [text_content]
137
+ elif elem.tag == "TAGS":
138
+ tags = self.read_tags(root)
139
+ return (result_text, tags)
140
+
141
+ def read_tags(self, root) -> Dict[str, str]:
142
+ """Reads the tags from an XML file and returns a dictionary of tags"""
143
+ tags_dict = {}
144
+ for tag in root.iter("TAGS"):
145
+ for subtag in tag:
146
+ met_value = subtag.attrib.get("met")
147
+ if self.is_convert_to_numbers:
148
+ met_value = 1 if met_value == "met" else 0
149
+ tags_dict[subtag.tag] = met_value
150
+ return tags_dict
151
+
152
+ def split_text(self, text: str) -> List[str]:
153
+ split_char = "*" * 100
154
+ parts = [x.strip() for x in text.split(split_char) if x.strip() != ""]
155
+ return parts
156
+
157
+ def remove_excessive_newlines(self, text: str) -> str:
158
+ text = text.replace("\n\n\n", "\n")
159
+ return text
160
+
161
+
162
+ class N2C2CTMatchingScenario(Scenario):
163
+ """
164
+ From "Cohort selection for clinical trials: n2c2 2018 shared task track 1" (Stubbs et al. 2019).
165
+ N2C2 is a collection of 288 patients (202 train / 86 test), each with 2-5 deidentified real-world clinical notes.
166
+ We use the prompt LLM formulation from Wornow et al. (2024).
167
+
168
+ Citation
169
+ ```
170
+ @article{stubbs2019cohort,
171
+ title={Cohort selection for clinical trials: n2c2 2018 shared task track 1},
172
+ author={Stubbs, Amber and Filannino, Michele and Soysal, Ergin and Henry, Samuel and Uzuner, {\"O}zlem},
173
+ journal={Journal of the American Medical Informatics Association},
174
+ volume={26},
175
+ number={11},
176
+ pages={1163--1171},
177
+ year={2019},
178
+ publisher={Oxford University Press}
179
+ }
180
+ @article{wornow2024zero,
181
+ title={Zero-shot clinical trial patient matching with llms},
182
+ author={Wornow, Michael and Lozano, Alejandro and Dash, Dev and Jindal, Jenelle and Mahaffey, \
183
+ Kenneth W and Shah, Nigam H},
184
+ journal={NEJM AI},
185
+ pages={AIcs2400360},
186
+ year={2024},
187
+ publisher={Massachusetts Medical Society}
188
+ }
189
+ ```
190
+ """
191
+
192
+ name = "n2c2_ct_matching"
193
+ description = (
194
+ "N2C2-CT is a benchmark designed to evaluate a model's ability to match patients to"
195
+ "appropriate clinical trials based on eligibility criteria. Each example includes a clinical"
196
+ "note and a trial description. The model is tasked with determining whether the patient"
197
+ "is a valid candidate for the trial. This benchmark supports automation and decision"
198
+ "support in clinical research enrollment."
199
+ )
200
+ tags = [] # TODO
201
+
202
+ POSSIBLE_ANSWER_CHOICES: List[str] = [
203
+ "yes",
204
+ "no",
205
+ ]
206
+
207
+ def __init__(self, data_path: str, subject: str):
208
+ super().__init__()
209
+ self.subject: str = subject # specific inclusion criterion to assess
210
+ self.data_path: str = data_path
211
+ self.path_to_train_dir: str = os.path.join(self.data_path, "train/")
212
+ self.path_to_test_dir: str = os.path.join(self.data_path, "test/")
213
+
214
+ def create_prompt(self, patient: Dict[str, Any]) -> str:
215
+ # Cast None values to empty strings during string formatting, but keep the original functions returning None
216
+ notes_list = [
217
+ f"## Note #{i+1}\nDate: {XMLDataLoader.get_date_of_note(patient, i) or ''}\n{note}"
218
+ for i, note in enumerate(patient["ehr"])
219
+ ]
220
+ notes: str = ("\n" + "*" * 50 + "\n\n").join(notes_list)
221
+ current_date = XMLDataLoader.get_current_date_for_patient(patient)
222
+ prompt = f"""
223
+ # Task
224
+ Your job is to decide whether the given patient meets the inclusion criterion for a clinical trial.
225
+
226
+ # Inclusion Criterion
227
+ The inclusion criterion being assessed is: "{self.subject}".
228
+ The definition of the inclusion criterion is: "{LONG_DEFINITIONS[self.subject]}".
229
+
230
+ # Patient Clinical Notes
231
+ Below is a set of {len(patient['ehr'])} clinical notes describing the patient's current health status. \
232
+ Each note is separated by a header with the date that the note was written, as well as a long list of asterisks.
233
+
234
+ {'-' * 100}
235
+
236
+ {notes}
237
+
238
+ {'-' * 100}
239
+
240
+ # Current Date
241
+ Assume that the current date is: {current_date}
242
+
243
+ # Question
244
+ Does the patient meet the inclusion criterion "{self.subject}"?
245
+ """
246
+ return prompt
247
+
248
+ def get_instances(self, output_path: str) -> List[Instance]:
249
+ instances: List[Instance] = []
250
+ for split in ["train", "test"]:
251
+ # limit to zero shot setting
252
+ if split == "test":
253
+ path_to_data = self.path_to_train_dir if split == "train" else self.path_to_test_dir
254
+ ensure_directory_exists(path_to_data)
255
+
256
+ # Load dataset
257
+ dataloader = XMLDataLoader(path_to_data)
258
+ dataset = dataloader.load_data()
259
+
260
+ # Create instances
261
+ for patient in dataset:
262
+ is_met: bool = patient["labels"][self.subject]
263
+ correct_answer: str = "yes" if is_met else "no"
264
+
265
+ # Build `References. The possible answer choices are "yes" or "no"
266
+ references: List[Reference] = [
267
+ Reference(Output(text=answer), tags=[CORRECT_TAG] if answer == correct_answer else [])
268
+ for answer in N2C2CTMatchingScenario.POSSIBLE_ANSWER_CHOICES
269
+ ]
270
+
271
+ instances.append(
272
+ Instance(
273
+ input=Input(text=self.create_prompt(patient)),
274
+ references=references,
275
+ split=TRAIN_SPLIT if split == "train" else TEST_SPLIT,
276
+ )
277
+ )
278
+
279
+ return instances
280
+
281
+ def get_metadata(self):
282
+ return ScenarioMetadata(
283
+ name="n2c2_ct_matching",
284
+ display_name="N2C2-CT Matching",
285
+ short_display_name="N2C2-CT",
286
+ description="A dataset that provides clinical notes and asks the model to classify whether "
287
+ "the patient is a valid candidate for a provided clinical trial.",
288
+ taxonomy=TaxonomyInfo(
289
+ task="Classification",
290
+ what="Classify whether a patient is a valid candidate for a clinical " "trial based on clinical notes",
291
+ when="Pre-Trial",
292
+ who="Researcher",
293
+ language="English",
294
+ ),
295
+ main_metric="exact_match",
296
+ main_split="test",
297
+ )
@@ -3,8 +3,9 @@ import random
3
3
  import csv
4
4
  from typing import List, Dict
5
5
 
6
+ from helm.benchmark.presentation.taxonomy_info import TaxonomyInfo
6
7
  from helm.common.general import ensure_file_downloaded, ensure_directory_exists
7
- from .scenario import (
8
+ from helm.benchmark.scenarios.scenario import (
8
9
  Scenario,
9
10
  Instance,
10
11
  Reference,
@@ -13,6 +14,7 @@ from .scenario import (
13
14
  Input,
14
15
  PassageQuestionInput,
15
16
  Output,
17
+ ScenarioMetadata,
16
18
  )
17
19
 
18
20
 
@@ -155,3 +157,20 @@ class NarrativeQAScenario(Scenario):
155
157
  instances.extend(self.get_split_instances(summaries_file=summaries_file, qaps_file=qaps_file, split=split))
156
158
 
157
159
  return instances
160
+
161
+ def get_metadata(self) -> ScenarioMetadata:
162
+ return ScenarioMetadata(
163
+ name="narrative_qa",
164
+ display_name="NarrativeQA",
165
+ description="The NarrativeQA benchmark for reading comprehension over narratives [(Kočiský "
166
+ "et al., 2017)](https://aclanthology.org/Q18-1023/).",
167
+ taxonomy=TaxonomyInfo(
168
+ task="short-answer question answering",
169
+ what="passages are books and movie scripts, questions are unknown",
170
+ when="2018",
171
+ who="annotators from summaries",
172
+ language="English",
173
+ ),
174
+ main_metric="f1_score",
175
+ main_split="test",
176
+ )
@@ -6,11 +6,12 @@ import os
6
6
  import re
7
7
  import html
8
8
  import random
9
+ from helm.benchmark.presentation.taxonomy_info import TaxonomyInfo
9
10
  from helm.common.hierarchical_logger import htrack_block, hlog
10
11
  from typing import List, Dict
11
12
 
12
13
  from helm.common.general import ensure_file_downloaded, ensure_directory_exists, asdict_without_nones
13
- from .scenario import (
14
+ from helm.benchmark.scenarios.scenario import (
14
15
  Scenario,
15
16
  Instance,
16
17
  Reference,
@@ -20,6 +21,7 @@ from .scenario import (
20
21
  PassageQuestionInput,
21
22
  Input,
22
23
  Output,
24
+ ScenarioMetadata,
23
25
  )
24
26
 
25
27
 
@@ -324,3 +326,33 @@ class NaturalQAScenario(Scenario):
324
326
  instances.extend(self.get_file_instances(target_path))
325
327
 
326
328
  return instances
329
+
330
+ def get_metadata(self) -> ScenarioMetadata:
331
+ if self.context_mode == "closedbook":
332
+ name = "natural_qa_closedbook"
333
+ display_name = "NaturalQuestions (closed-book)"
334
+ elif self.context_mode == "openbook_longans":
335
+ name = "natural_qa_openbook_longans"
336
+ display_name = "NaturalQuestions (open-book)"
337
+ elif self.context_mode == "openbook_wiki":
338
+ name = "natural_qa_openbook_wiki"
339
+ display_name = "NaturalQuestions (open-book Wiki)"
340
+ else:
341
+ raise Exception(f"Unknown context_mode {self.context_mode}")
342
+ return ScenarioMetadata(
343
+ name=name,
344
+ display_name=display_name,
345
+ description="The NaturalQuestions [(Kwiatkowski et al., "
346
+ "2019)](https://aclanthology.org/Q19-1026/) benchmark for question answering "
347
+ "based on naturally-occurring queries through Google Search. The input does not "
348
+ "include the Wikipedia page with the answer.",
349
+ taxonomy=TaxonomyInfo(
350
+ task="question answering",
351
+ what="passages from Wikipedia, questions from search queries",
352
+ when="2010s",
353
+ who="web users",
354
+ language="English",
355
+ ),
356
+ main_metric="f1_score",
357
+ main_split="valid",
358
+ )
@@ -3,7 +3,7 @@ import json
3
3
  import random
4
4
  from typing import Dict, List, Tuple
5
5
 
6
- from .scenario import (
6
+ from helm.benchmark.scenarios.scenario import (
7
7
  Scenario,
8
8
  Instance,
9
9
  Reference,
@@ -0,0 +1,57 @@
1
+ from typing import List, Any
2
+ from pathlib import Path
3
+ from datasets import load_dataset
4
+
5
+ from helm.benchmark.scenarios.scenario import (
6
+ Scenario,
7
+ Instance,
8
+ Reference,
9
+ CORRECT_TAG,
10
+ TEST_SPLIT,
11
+ Input,
12
+ Output,
13
+ )
14
+
15
+
16
+ class OABExamsScenario(Scenario):
17
+ """
18
+ The OAB Exam is a mandatory test for anyone who wants to practice law in Brazil. The exam is composed for
19
+ an objective test with 80 multiple-choice questions covering all areas of Law and a written phase focused
20
+ on a specific legal area (e.g., Civil, Criminal, Labor Law), where candidates must draft a legal document
21
+ and answer four essay questions.
22
+
23
+ This dataset is composed by the exams that occured between 2010 and 2018.
24
+
25
+ The dataset can be found in this link: https://huggingface.co/datasets/eduagarcia/oab_exams
26
+ """
27
+
28
+ name = "oab_exams"
29
+ description = "OAB exams dataset"
30
+ tags = ["knowledge", "multiple_choice", "pt-br"]
31
+
32
+ def get_instances(self, output_path: str) -> List[Instance]:
33
+ # Download the raw data and read all the dialogues
34
+ dataset: Any
35
+ # Read all the instances
36
+ instances: List[Instance] = []
37
+ cache_dir = str(Path(output_path) / "data")
38
+
39
+ dataset = load_dataset("eduagarcia/oab_exams", cache_dir=cache_dir)
40
+ for example in dataset["train"]:
41
+ question = example["question"]
42
+ choices = example["choices"]
43
+ answer = example["answerKey"]
44
+ # Skipping every canceled question!
45
+ if example["nullified"]:
46
+ continue
47
+ answers_dict = dict(zip(choices["label"], choices["text"]))
48
+ correct_answer = answers_dict[answer]
49
+
50
+ def answer_to_reference(answer: str) -> Reference:
51
+ return Reference(Output(text=answer), tags=[CORRECT_TAG] if answer == correct_answer else [])
52
+
53
+ instance = Instance(
54
+ input=Input(text=question), split=TEST_SPLIT, references=list(map(answer_to_reference, choices["text"]))
55
+ )
56
+ instances.append(instance)
57
+ return instances