crca 1.4.0__py3-none-any.whl → 1.5.0__py3-none-any.whl

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Files changed (306) hide show
  1. CRCA.py +172 -7
  2. MODEL_CARD.md +53 -0
  3. PKG-INFO +8 -2
  4. RELEASE_NOTES.md +17 -0
  5. STABILITY.md +19 -0
  6. architecture/hybrid/consistency_engine.py +362 -0
  7. architecture/hybrid/conversation_manager.py +421 -0
  8. architecture/hybrid/explanation_generator.py +452 -0
  9. architecture/hybrid/few_shot_learner.py +533 -0
  10. architecture/hybrid/graph_compressor.py +286 -0
  11. architecture/hybrid/hybrid_agent.py +4398 -0
  12. architecture/hybrid/language_compiler.py +623 -0
  13. architecture/hybrid/main,py +0 -0
  14. architecture/hybrid/reasoning_tracker.py +322 -0
  15. architecture/hybrid/self_verifier.py +524 -0
  16. architecture/hybrid/task_decomposer.py +567 -0
  17. architecture/hybrid/text_corrector.py +341 -0
  18. benchmark_results/crca_core_benchmarks.json +178 -0
  19. branches/crca_sd/crca_sd_realtime.py +6 -2
  20. branches/general_agent/__init__.py +102 -0
  21. branches/general_agent/general_agent.py +1400 -0
  22. branches/general_agent/personality.py +169 -0
  23. branches/general_agent/utils/__init__.py +19 -0
  24. branches/general_agent/utils/prompt_builder.py +170 -0
  25. {crca-1.4.0.dist-info → crca-1.5.0.dist-info}/METADATA +8 -2
  26. {crca-1.4.0.dist-info → crca-1.5.0.dist-info}/RECORD +303 -20
  27. crca_core/__init__.py +35 -0
  28. crca_core/benchmarks/__init__.py +14 -0
  29. crca_core/benchmarks/synthetic_scm.py +103 -0
  30. crca_core/core/__init__.py +23 -0
  31. crca_core/core/api.py +120 -0
  32. crca_core/core/estimate.py +208 -0
  33. crca_core/core/godclass.py +72 -0
  34. crca_core/core/intervention_design.py +174 -0
  35. crca_core/core/lifecycle.py +48 -0
  36. crca_core/discovery/__init__.py +9 -0
  37. crca_core/discovery/tabular.py +193 -0
  38. crca_core/identify/__init__.py +171 -0
  39. crca_core/identify/backdoor.py +39 -0
  40. crca_core/identify/frontdoor.py +48 -0
  41. crca_core/identify/graph.py +106 -0
  42. crca_core/identify/id_algorithm.py +43 -0
  43. crca_core/identify/iv.py +48 -0
  44. crca_core/models/__init__.py +67 -0
  45. crca_core/models/provenance.py +56 -0
  46. crca_core/models/refusal.py +39 -0
  47. crca_core/models/result.py +83 -0
  48. crca_core/models/spec.py +151 -0
  49. crca_core/models/validation.py +68 -0
  50. crca_core/scm/__init__.py +9 -0
  51. crca_core/scm/linear_gaussian.py +198 -0
  52. crca_core/timeseries/__init__.py +6 -0
  53. crca_core/timeseries/pcmci.py +181 -0
  54. crca_llm/__init__.py +12 -0
  55. crca_llm/client.py +85 -0
  56. crca_llm/coauthor.py +118 -0
  57. crca_llm/orchestrator.py +289 -0
  58. crca_llm/types.py +21 -0
  59. crca_reasoning/__init__.py +16 -0
  60. crca_reasoning/critique.py +54 -0
  61. crca_reasoning/godclass.py +206 -0
  62. crca_reasoning/memory.py +24 -0
  63. crca_reasoning/rationale.py +10 -0
  64. crca_reasoning/react_controller.py +81 -0
  65. crca_reasoning/tool_router.py +97 -0
  66. crca_reasoning/types.py +40 -0
  67. crca_sd/__init__.py +15 -0
  68. crca_sd/crca_sd_core.py +2 -0
  69. crca_sd/crca_sd_governance.py +2 -0
  70. crca_sd/crca_sd_mpc.py +2 -0
  71. crca_sd/crca_sd_realtime.py +2 -0
  72. crca_sd/crca_sd_tui.py +2 -0
  73. cuda-keyring_1.1-1_all.deb +0 -0
  74. cuda-keyring_1.1-1_all.deb.1 +0 -0
  75. docs/IMAGE_ANNOTATION_USAGE.md +539 -0
  76. docs/INSTALL_DEEPSPEED.md +125 -0
  77. docs/api/branches/crca-cg.md +19 -0
  78. docs/api/branches/crca-q.md +27 -0
  79. docs/api/branches/crca-sd.md +37 -0
  80. docs/api/branches/general-agent.md +24 -0
  81. docs/api/branches/overview.md +19 -0
  82. docs/api/crca/agent-methods.md +62 -0
  83. docs/api/crca/operations.md +79 -0
  84. docs/api/crca/overview.md +32 -0
  85. docs/api/image-annotation/engine.md +52 -0
  86. docs/api/image-annotation/overview.md +17 -0
  87. docs/api/schemas/annotation.md +34 -0
  88. docs/api/schemas/core-schemas.md +82 -0
  89. docs/api/schemas/overview.md +32 -0
  90. docs/api/schemas/policy.md +30 -0
  91. docs/api/utils/conversation.md +22 -0
  92. docs/api/utils/graph-reasoner.md +32 -0
  93. docs/api/utils/overview.md +21 -0
  94. docs/api/utils/router.md +19 -0
  95. docs/api/utils/utilities.md +97 -0
  96. docs/architecture/causal-graphs.md +41 -0
  97. docs/architecture/data-flow.md +29 -0
  98. docs/architecture/design-principles.md +33 -0
  99. docs/architecture/hybrid-agent/components.md +38 -0
  100. docs/architecture/hybrid-agent/consistency.md +26 -0
  101. docs/architecture/hybrid-agent/overview.md +44 -0
  102. docs/architecture/hybrid-agent/reasoning.md +22 -0
  103. docs/architecture/llm-integration.md +26 -0
  104. docs/architecture/modular-structure.md +37 -0
  105. docs/architecture/overview.md +69 -0
  106. docs/architecture/policy-engine-arch.md +29 -0
  107. docs/branches/crca-cg/corposwarm.md +39 -0
  108. docs/branches/crca-cg/esg-scoring.md +30 -0
  109. docs/branches/crca-cg/multi-agent.md +35 -0
  110. docs/branches/crca-cg/overview.md +40 -0
  111. docs/branches/crca-q/alternative-data.md +55 -0
  112. docs/branches/crca-q/architecture.md +71 -0
  113. docs/branches/crca-q/backtesting.md +45 -0
  114. docs/branches/crca-q/causal-engine.md +33 -0
  115. docs/branches/crca-q/execution.md +39 -0
  116. docs/branches/crca-q/market-data.md +60 -0
  117. docs/branches/crca-q/overview.md +58 -0
  118. docs/branches/crca-q/philosophy.md +60 -0
  119. docs/branches/crca-q/portfolio-optimization.md +66 -0
  120. docs/branches/crca-q/risk-management.md +102 -0
  121. docs/branches/crca-q/setup.md +65 -0
  122. docs/branches/crca-q/signal-generation.md +61 -0
  123. docs/branches/crca-q/signal-validation.md +43 -0
  124. docs/branches/crca-sd/core.md +84 -0
  125. docs/branches/crca-sd/governance.md +53 -0
  126. docs/branches/crca-sd/mpc-solver.md +65 -0
  127. docs/branches/crca-sd/overview.md +59 -0
  128. docs/branches/crca-sd/realtime.md +28 -0
  129. docs/branches/crca-sd/tui.md +20 -0
  130. docs/branches/general-agent/overview.md +37 -0
  131. docs/branches/general-agent/personality.md +36 -0
  132. docs/branches/general-agent/prompt-builder.md +30 -0
  133. docs/changelog/index.md +79 -0
  134. docs/contributing/code-style.md +69 -0
  135. docs/contributing/documentation.md +43 -0
  136. docs/contributing/overview.md +29 -0
  137. docs/contributing/testing.md +29 -0
  138. docs/core/crcagent/async-operations.md +65 -0
  139. docs/core/crcagent/automatic-extraction.md +107 -0
  140. docs/core/crcagent/batch-prediction.md +80 -0
  141. docs/core/crcagent/bayesian-inference.md +60 -0
  142. docs/core/crcagent/causal-graph.md +92 -0
  143. docs/core/crcagent/counterfactuals.md +96 -0
  144. docs/core/crcagent/deterministic-simulation.md +78 -0
  145. docs/core/crcagent/dual-mode-operation.md +82 -0
  146. docs/core/crcagent/initialization.md +88 -0
  147. docs/core/crcagent/optimization.md +65 -0
  148. docs/core/crcagent/overview.md +63 -0
  149. docs/core/crcagent/time-series.md +57 -0
  150. docs/core/schemas/annotation.md +30 -0
  151. docs/core/schemas/core-schemas.md +82 -0
  152. docs/core/schemas/overview.md +30 -0
  153. docs/core/schemas/policy.md +41 -0
  154. docs/core/templates/base-agent.md +31 -0
  155. docs/core/templates/feature-mixins.md +31 -0
  156. docs/core/templates/overview.md +29 -0
  157. docs/core/templates/templates-guide.md +75 -0
  158. docs/core/tools/mcp-client.md +34 -0
  159. docs/core/tools/overview.md +24 -0
  160. docs/core/utils/conversation.md +27 -0
  161. docs/core/utils/graph-reasoner.md +29 -0
  162. docs/core/utils/overview.md +27 -0
  163. docs/core/utils/router.md +27 -0
  164. docs/core/utils/utilities.md +97 -0
  165. docs/css/custom.css +84 -0
  166. docs/examples/basic-usage.md +57 -0
  167. docs/examples/general-agent/general-agent-examples.md +50 -0
  168. docs/examples/hybrid-agent/hybrid-agent-examples.md +56 -0
  169. docs/examples/image-annotation/image-annotation-examples.md +54 -0
  170. docs/examples/integration/integration-examples.md +58 -0
  171. docs/examples/overview.md +37 -0
  172. docs/examples/trading/trading-examples.md +46 -0
  173. docs/features/causal-reasoning/advanced-topics.md +101 -0
  174. docs/features/causal-reasoning/counterfactuals.md +43 -0
  175. docs/features/causal-reasoning/do-calculus.md +50 -0
  176. docs/features/causal-reasoning/overview.md +47 -0
  177. docs/features/causal-reasoning/structural-models.md +52 -0
  178. docs/features/hybrid-agent/advanced-components.md +55 -0
  179. docs/features/hybrid-agent/core-components.md +64 -0
  180. docs/features/hybrid-agent/overview.md +34 -0
  181. docs/features/image-annotation/engine.md +82 -0
  182. docs/features/image-annotation/features.md +113 -0
  183. docs/features/image-annotation/integration.md +75 -0
  184. docs/features/image-annotation/overview.md +53 -0
  185. docs/features/image-annotation/quickstart.md +73 -0
  186. docs/features/policy-engine/doctrine-ledger.md +105 -0
  187. docs/features/policy-engine/monitoring.md +44 -0
  188. docs/features/policy-engine/mpc-control.md +89 -0
  189. docs/features/policy-engine/overview.md +46 -0
  190. docs/getting-started/configuration.md +225 -0
  191. docs/getting-started/first-agent.md +164 -0
  192. docs/getting-started/installation.md +144 -0
  193. docs/getting-started/quickstart.md +137 -0
  194. docs/index.md +118 -0
  195. docs/js/mathjax.js +13 -0
  196. docs/lrm/discovery_proof_notes.md +25 -0
  197. docs/lrm/finetune_full.md +83 -0
  198. docs/lrm/math_appendix.md +120 -0
  199. docs/lrm/overview.md +32 -0
  200. docs/mkdocs.yml +238 -0
  201. docs/stylesheets/extra.css +21 -0
  202. docs_generated/crca_core/CounterfactualResult.md +12 -0
  203. docs_generated/crca_core/DiscoveryHypothesisResult.md +13 -0
  204. docs_generated/crca_core/DraftSpec.md +13 -0
  205. docs_generated/crca_core/EstimateResult.md +13 -0
  206. docs_generated/crca_core/IdentificationResult.md +17 -0
  207. docs_generated/crca_core/InterventionDesignResult.md +12 -0
  208. docs_generated/crca_core/LockedSpec.md +15 -0
  209. docs_generated/crca_core/RefusalResult.md +12 -0
  210. docs_generated/crca_core/ValidationReport.md +9 -0
  211. docs_generated/crca_core/index.md +13 -0
  212. examples/general_agent_example.py +277 -0
  213. examples/general_agent_quickstart.py +202 -0
  214. examples/general_agent_simple.py +92 -0
  215. examples/hybrid_agent_auto_extraction.py +84 -0
  216. examples/hybrid_agent_dictionary_demo.py +104 -0
  217. examples/hybrid_agent_enhanced.py +179 -0
  218. examples/hybrid_agent_general_knowledge.py +107 -0
  219. examples/image_annotation_quickstart.py +328 -0
  220. examples/test_hybrid_fixes.py +77 -0
  221. image_annotation/__init__.py +27 -0
  222. image_annotation/annotation_engine.py +2593 -0
  223. install_cuda_wsl2.sh +59 -0
  224. install_deepspeed.sh +56 -0
  225. install_deepspeed_simple.sh +87 -0
  226. mkdocs.yml +252 -0
  227. ollama/Modelfile +8 -0
  228. prompts/__init__.py +2 -1
  229. prompts/default_crca.py +9 -1
  230. prompts/general_agent.py +227 -0
  231. prompts/image_annotation.py +56 -0
  232. pyproject.toml +17 -2
  233. requirements-docs.txt +10 -0
  234. requirements.txt +21 -2
  235. schemas/__init__.py +26 -1
  236. schemas/annotation.py +222 -0
  237. schemas/conversation.py +193 -0
  238. schemas/hybrid.py +211 -0
  239. schemas/reasoning.py +276 -0
  240. schemas_export/crca_core/CounterfactualResult.schema.json +108 -0
  241. schemas_export/crca_core/DiscoveryHypothesisResult.schema.json +113 -0
  242. schemas_export/crca_core/DraftSpec.schema.json +635 -0
  243. schemas_export/crca_core/EstimateResult.schema.json +113 -0
  244. schemas_export/crca_core/IdentificationResult.schema.json +145 -0
  245. schemas_export/crca_core/InterventionDesignResult.schema.json +111 -0
  246. schemas_export/crca_core/LockedSpec.schema.json +646 -0
  247. schemas_export/crca_core/RefusalResult.schema.json +90 -0
  248. schemas_export/crca_core/ValidationReport.schema.json +62 -0
  249. scripts/build_lrm_dataset.py +80 -0
  250. scripts/export_crca_core_schemas.py +54 -0
  251. scripts/export_hf_lrm.py +37 -0
  252. scripts/export_ollama_gguf.py +45 -0
  253. scripts/generate_changelog.py +157 -0
  254. scripts/generate_crca_core_docs_from_schemas.py +86 -0
  255. scripts/run_crca_core_benchmarks.py +163 -0
  256. scripts/run_full_finetune.py +198 -0
  257. scripts/run_lrm_eval.py +31 -0
  258. templates/graph_management.py +29 -0
  259. tests/conftest.py +9 -0
  260. tests/test_core.py +2 -3
  261. tests/test_crca_core_discovery_tabular.py +15 -0
  262. tests/test_crca_core_estimate_dowhy.py +36 -0
  263. tests/test_crca_core_identify.py +18 -0
  264. tests/test_crca_core_intervention_design.py +36 -0
  265. tests/test_crca_core_linear_gaussian_scm.py +69 -0
  266. tests/test_crca_core_spec.py +25 -0
  267. tests/test_crca_core_timeseries_pcmci.py +15 -0
  268. tests/test_crca_llm_coauthor.py +12 -0
  269. tests/test_crca_llm_orchestrator.py +80 -0
  270. tests/test_hybrid_agent_llm_enhanced.py +556 -0
  271. tests/test_image_annotation_demo.py +376 -0
  272. tests/test_image_annotation_operational.py +408 -0
  273. tests/test_image_annotation_unit.py +551 -0
  274. tests/test_training_moe.py +13 -0
  275. training/__init__.py +42 -0
  276. training/datasets.py +140 -0
  277. training/deepspeed_zero2_0_5b.json +22 -0
  278. training/deepspeed_zero2_1_5b.json +22 -0
  279. training/deepspeed_zero3_0_5b.json +28 -0
  280. training/deepspeed_zero3_14b.json +28 -0
  281. training/deepspeed_zero3_h100_3gpu.json +20 -0
  282. training/deepspeed_zero3_offload.json +28 -0
  283. training/eval.py +92 -0
  284. training/finetune.py +516 -0
  285. training/public_datasets.py +89 -0
  286. training_data/react_train.jsonl +7473 -0
  287. utils/agent_discovery.py +311 -0
  288. utils/batch_processor.py +317 -0
  289. utils/conversation.py +78 -0
  290. utils/edit_distance.py +118 -0
  291. utils/formatter.py +33 -0
  292. utils/graph_reasoner.py +530 -0
  293. utils/rate_limiter.py +283 -0
  294. utils/router.py +2 -2
  295. utils/tool_discovery.py +307 -0
  296. webui/__init__.py +10 -0
  297. webui/app.py +229 -0
  298. webui/config.py +104 -0
  299. webui/static/css/style.css +332 -0
  300. webui/static/js/main.js +284 -0
  301. webui/templates/index.html +42 -0
  302. tests/test_crca_excel.py +0 -166
  303. tests/test_data_broker.py +0 -424
  304. tests/test_palantir.py +0 -349
  305. {crca-1.4.0.dist-info → crca-1.5.0.dist-info}/WHEEL +0 -0
  306. {crca-1.4.0.dist-info → crca-1.5.0.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,37 @@
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+ # CRCA-SD API
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+
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+ API reference for CRCA-SD socioeconomic dynamics.
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+
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+ ## Classes
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+
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+ ### StateVector
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+
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+ Socioeconomic state vector.
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+
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+ ```python
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+ class StateVector:
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+ P: float # Population
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+ L: float # Labor
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+ U: float # Unemployment
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+ # ... 15 variables total
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+ ```
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+
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+ ### DynamicsModel
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+
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+ System dynamics model.
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+
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+ ```python
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+ class DynamicsModel:
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+ def step(self, x_t: StateVector, u_t: ControlVector) -> StateVector:
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+ """Step forward one time period."""
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+ ```
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+
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+ ## Mathematical Foundation
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+
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+ Dynamics follow:
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+
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+ $$\mathbf{x}_{t+1} = f(\mathbf{x}_t, \mathbf{u}_t, \mathbf{w}_t)$$
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+
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+ ## Next Steps
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+
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+ - [CRCA-CG](crca-cg.md) - Corporate governance API
@@ -0,0 +1,24 @@
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+ # General Agent API
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+
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+ API reference for General Agent.
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+
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+ ## Classes
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+
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+ ### GeneralAgent
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+
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+ General-purpose agent.
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+
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+ ```python
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+ class GeneralAgent(BaseSpecializedAgent):
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+ def __init__(
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+ self,
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+ model_name: str,
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+ enable_multimodal: bool = False,
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+ personality: Optional[Personality] = None
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+ ):
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+ """Initialize general agent."""
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+ ```
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+
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+ ## Next Steps
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+
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+ - [Image Annotation API](../image-annotation/overview.md) - Image annotation API
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+ # Branches API Reference
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+
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+ API reference for specialized branches.
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+
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+ ## Overview
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+
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+ Branches API provides documentation for CRCA-Q, CRCA-SD, CRCA-CG, and General Agent.
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+
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+ ## Branches
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+
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+ - **[CRCA-Q](crca-q.md)**: Quantitative trading API
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+ - **[CRCA-SD](crca-sd.md)**: Socioeconomic dynamics API
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+ - **[CRCA-CG](crca-cg.md)**: Corporate governance API
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+ - **[General Agent](general-agent.md)**: General agent API
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+
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+ ## Next Steps
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+
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+ - [CRCA-Q](crca-q.md) - Trading API
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+ - [CRCA-SD](crca-sd.md) - Socioeconomic dynamics API
@@ -0,0 +1,62 @@
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+ # CRCAAgent Class & Core Methods
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+
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+ Main causal reasoning agent class and core methods.
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+
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+ ## Class Definition
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+
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+ ```python
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+ class CRCAAgent(Agent):
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+ """Causal Reasoning with Counterfactual Analysis Agent."""
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+ ```
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+
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+ ## Initialization
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+
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+ ```python
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+ CRCAAgent(
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+ model_name: str = "gpt-4o-mini",
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+ agent_name: str = "cr-ca-lite-agent",
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+ max_loops: Optional[Union[int, str]] = 3,
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+ variables: Optional[List[str]] = None,
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+ causal_edges: Optional[List[Tuple[str, str]] = None,
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+ **kwargs
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+ )
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+ ```
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+
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+ ## Core Methods
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+
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+ ### run()
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+
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+ Execute a causal reasoning task.
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+
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+ ```python
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+ def run(self, task: str) -> str:
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+ """Execute causal reasoning task."""
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+ ```
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+
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+ ### add_causal_relationship()
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+
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+ Add a causal relationship to the graph.
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+
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+ ```python
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+ def add_causal_relationship(
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+ self,
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+ parent: str,
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+ child: str,
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+ strength: float = 0.0
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+ ) -> None:
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+ """Add causal relationship."""
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+ ```
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+
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+ ## Mathematical Foundation
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+
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+ The agent implements operations on SCMs:
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+
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+ $$V_i = f_i(Pa(V_i), U_i)$$
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+
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+ Methods implement:
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+ - **run**: $Result = f(Task, SCM)$
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+ - **add_causal_relationship**: $E \leftarrow E \cup \{(X, Y)\}$
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+
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+ ## Next Steps
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+
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+ - [Operations](operations.md) - Advanced operations
@@ -0,0 +1,79 @@
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+ # CRCAAgent Operations
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+
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+ Advanced operations including extraction, simulation, and counterfactuals.
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+
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+ ## Variable Extraction
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+
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+ Methods for automatic variable extraction from natural language.
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+
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+ ### Mathematical Foundation
10
+
11
+ Extraction identifies:
12
+
13
+ $$V = \{V_1, \ldots, V_n\} = Extract(T)$$
14
+
15
+ Where $T$ is the natural language task.
16
+
17
+ ### Methods
18
+
19
+ - `extract_variables()`: Extract variables from text
20
+ - `extract_relationships()`: Extract causal relationships
21
+
22
+ ## Deterministic Simulation
23
+
24
+ Methods for deterministic causal simulation.
25
+
26
+ ### Mathematical Foundation
27
+
28
+ Simulation uses:
29
+
30
+ $$V_i(t+\Delta t) = V_i(t) + f_i(Pa(V_i(t)), U_i) \cdot \Delta t$$
31
+
32
+ For differential equation systems.
33
+
34
+ ### Methods
35
+
36
+ - `simulate()`: Single-step simulation
37
+ - `simulate_time_series()`: Multi-step simulation
38
+
39
+ ### Usage
40
+
41
+ ```python
42
+ result = agent.simulate(
43
+ variables={"education": 16, "experience": 5},
44
+ target="income"
45
+ )
46
+ ```
47
+
48
+ ## Counterfactual Generation
49
+
50
+ Methods for generating counterfactual scenarios.
51
+
52
+ ### Mathematical Foundation
53
+
54
+ Counterfactuals compute:
55
+
56
+ $$P(Y_{x'} | X=x, Y=y)$$
57
+
58
+ Using:
59
+ 1. **Abduction**: $U_Y = f^{-1}(X=x, Z=z, Y=y)$
60
+ 2. **Action**: Set $X = x'$
61
+ 3. **Prediction**: $Y_{x'} = f(X=x', Z=z, U_Y)$
62
+
63
+ ### Methods
64
+
65
+ - `generate_counterfactuals()`: Generate counterfactual scenarios
66
+ - `evaluate_counterfactual()`: Evaluate specific counterfactual
67
+
68
+ ### Usage
69
+
70
+ ```python
71
+ counterfactuals = agent.generate_counterfactuals(
72
+ intervention={"education": "college"},
73
+ outcome="income"
74
+ )
75
+ ```
76
+
77
+ ## Next Steps
78
+
79
+ - [Utils API](../utils/overview.md) - Utils API
@@ -0,0 +1,32 @@
1
+ # CRCAAgent API Reference
2
+
3
+ API reference for CRCAAgent and related classes.
4
+
5
+ ## Overview
6
+
7
+ This section provides API documentation for CRCAAgent. Documentation is hybrid: auto-generated where docstrings exist, manually created where they are missing.
8
+
9
+ ## Core Classes
10
+
11
+ - **[CRCAAgent](agent.md)**: Main agent class
12
+ - **[Methods](methods.md)**: Core methods
13
+ - **[Extraction](extraction.md)**: Variable extraction methods
14
+ - **[Simulation](simulation.md)**: Simulation methods
15
+ - **[Counterfactuals](counterfactuals.md)**: Counterfactual methods
16
+
17
+ ## Mathematical Foundation
18
+
19
+ All methods implement operations on Structural Causal Models:
20
+
21
+ $$(U, V, F)$$
22
+
23
+ Where operations include:
24
+ - Variable extraction: $V = Extract(T)$
25
+ - Graph construction: $G = Build(V, E)$
26
+ - Causal inference: $E[Y | do(X=x)]$
27
+ - Counterfactuals: $P(Y_{x'} | X=x, Y=y)$
28
+
29
+ ## Next Steps
30
+
31
+ - [CRCAAgent](agent.md) - Agent class
32
+ - [Methods](methods.md) - Core methods
@@ -0,0 +1,52 @@
1
+ # AnnotationEngine API
2
+
3
+ API reference for AnnotationEngine class.
4
+
5
+ ## Class Definition
6
+
7
+ ```python
8
+ class ImageAnnotationEngine:
9
+ """Image annotation engine."""
10
+ ```
11
+
12
+ ## Methods
13
+
14
+ ### annotate()
15
+
16
+ Annotate image(s).
17
+
18
+ ```python
19
+ def annotate(
20
+ self,
21
+ input: Union[str, np.ndarray, Image.Image, List, Path],
22
+ frame_id: Optional[int] = None,
23
+ output: Optional[str] = None
24
+ ) -> Union[AnnotationResult, np.ndarray, Dict[str, Any], str, List]:
25
+ """Annotate image(s)."""
26
+ ```
27
+
28
+ ### query()
29
+
30
+ Query image with natural language.
31
+
32
+ ```python
33
+ def query(
34
+ self,
35
+ input: Union[str, np.ndarray, Image.Image, Path],
36
+ query: str,
37
+ frame_id: Optional[int] = None
38
+ ) -> Dict[str, Any]:
39
+ """Query image."""
40
+ ```
41
+
42
+ ## Mathematical Foundation
43
+
44
+ Annotation uses:
45
+
46
+ $$P(L_i | E_i, I) = LLM(E_i, I)$$
47
+
48
+ Where $L_i$ is label, $E_i$ is entity, and $I$ is image.
49
+
50
+ ## Next Steps
51
+
52
+ - [Schemas](schemas.md) - Annotation schemas
@@ -0,0 +1,17 @@
1
+ # Image Annotation API Reference
2
+
3
+ API reference for image annotation system.
4
+
5
+ ## Overview
6
+
7
+ Image annotation API provides documentation for AnnotationEngine and related classes.
8
+
9
+ ## Classes
10
+
11
+ - **[Engine](engine.md)**: AnnotationEngine class
12
+ - **[Schemas](schemas.md)**: Annotation data schemas
13
+
14
+ ## Next Steps
15
+
16
+ - [Engine](engine.md) - AnnotationEngine API
17
+ - [Schemas](schemas.md) - Annotation schemas
@@ -0,0 +1,34 @@
1
+ # Annotation Schemas
2
+
3
+ Schemas for image annotation system.
4
+
5
+ ## Classes
6
+
7
+ ### AnnotationResult
8
+
9
+ Complete annotation result.
10
+
11
+ ```python
12
+ class AnnotationResult(BaseModel):
13
+ annotation_graph: AnnotationGraph
14
+ overlay_image: Optional[bytes]
15
+ formal_report: str
16
+ json_output: Dict[str, Any]
17
+ processing_time: float
18
+ ```
19
+
20
+ ### PrimitiveEntity
21
+
22
+ Geometric primitive entity.
23
+
24
+ ```python
25
+ class PrimitiveEntity(BaseModel):
26
+ entity_id: str
27
+ primitive_type: str
28
+ pixel_coords: List[Tuple[int, int]]
29
+ metadata: Dict[str, Any]
30
+ ```
31
+
32
+ ## Next Steps
33
+
34
+ - [Conversation](conversation.md) - Conversation schemas
@@ -0,0 +1,82 @@
1
+ # Core Schemas API
2
+
3
+ API for core data schemas grouped together.
4
+
5
+ ## Conversation Schemas
6
+
7
+ Schemas for conversation management.
8
+
9
+ ### Classes
10
+
11
+ - `ConversationState`: Current conversation state
12
+ - `Message`: Individual message in conversation
13
+ - `Context`: Conversation context
14
+
15
+ ### Usage
16
+
17
+ ```python
18
+ from schemas.conversation import ConversationState, Message
19
+
20
+ state = ConversationState(
21
+ messages=[Message(role="user", content="Hello")]
22
+ )
23
+ ```
24
+
25
+ ## Hybrid Agent Schemas
26
+
27
+ Schemas for hybrid agent architecture.
28
+
29
+ ### Classes
30
+
31
+ - `HybridAgentState`: Hybrid agent state
32
+ - `ReasoningStep`: Individual reasoning step
33
+ - `ConsistencyCheck`: Consistency check result
34
+
35
+ ### Usage
36
+
37
+ ```python
38
+ from schemas.hybrid import HybridAgentState
39
+
40
+ state = HybridAgentState(
41
+ reasoning_steps=[],
42
+ consistency_checks=[]
43
+ )
44
+ ```
45
+
46
+ ## Reasoning Schemas
47
+
48
+ Schemas for causal reasoning operations and results.
49
+
50
+ ### Classes
51
+
52
+ - `CausalInferenceResult`: Causal inference result
53
+ - `CounterfactualScenario`: Counterfactual scenario
54
+ - `CausalEffect`: Causal effect estimate
55
+
56
+ ### Mathematical Foundation
57
+
58
+ Causal effect:
59
+
60
+ $$\tau = E[Y | do(X=1)] - E[Y | do(X=0)]$$
61
+
62
+ With confidence interval:
63
+
64
+ $$CI_{1-\alpha} = [\tau - z_{\alpha/2} \cdot SE, \tau + z_{\alpha/2} \cdot SE]$$
65
+
66
+ ### Usage
67
+
68
+ ```python
69
+ from schemas.reasoning import CausalInferenceResult
70
+
71
+ result = CausalInferenceResult(
72
+ treatment="X",
73
+ outcome="Y",
74
+ effect=0.5,
75
+ confidence=0.9
76
+ )
77
+ ```
78
+
79
+ ## Next Steps
80
+
81
+ - [Annotation](annotation.md) - Image annotation schemas
82
+ - [Policy](policy.md) - Policy engine schemas
@@ -0,0 +1,32 @@
1
+ # Schemas API Reference
2
+
3
+ API reference for data schemas.
4
+
5
+ ## Overview
6
+
7
+ Schemas define Pydantic models for type safety and validation.
8
+
9
+ ## Modules
10
+
11
+ - **[Annotation](annotation.md)**: Image annotation schemas
12
+ - **[Conversation](conversation.md)**: Conversation schemas
13
+ - **[Hybrid](hybrid.md)**: Hybrid agent schemas
14
+ - **[Reasoning](reasoning.md)**: Reasoning schemas
15
+ - **[Policy](policy.md)**: Policy engine schemas
16
+
17
+ ## Usage
18
+
19
+ ```python
20
+ from schemas.annotation import AnnotationResult
21
+
22
+ result = AnnotationResult(
23
+ entities=[],
24
+ labels=[],
25
+ relations=[]
26
+ )
27
+ ```
28
+
29
+ ## Next Steps
30
+
31
+ - [Annotation](annotation.md) - Annotation schemas
32
+ - [Policy](policy.md) - Policy schemas
@@ -0,0 +1,30 @@
1
+ # Policy Engine Schemas
2
+
3
+ Schemas for policy engine system.
4
+
5
+ ## Classes
6
+
7
+ ### DoctrineV1
8
+
9
+ Policy doctrine definition.
10
+
11
+ ```python
12
+ class DoctrineV1(BaseModel):
13
+ version: str
14
+ objectives: List[str]
15
+ constraints: List[str]
16
+ ```
17
+
18
+ ## Mathematical Foundation
19
+
20
+ Doctrine defines optimization problem:
21
+
22
+ $$\min_{\mathbf{u}} \sum_{i} w_i J_i(\mathbf{u})$$
23
+
24
+ Subject to:
25
+
26
+ $$g_j(\mathbf{u}) \leq 0, \quad j = 1, \ldots, m$$
27
+
28
+ ## Next Steps
29
+
30
+ - [Branches API](../branches/overview.md) - Branches API
@@ -0,0 +1,22 @@
1
+ # Conversation API
2
+
3
+ API for conversation management.
4
+
5
+ ## Classes
6
+
7
+ ### ConversationManager
8
+
9
+ Manages conversation state and history.
10
+
11
+ ```python
12
+ class ConversationManager:
13
+ def add_message(self, role: str, content: str) -> None:
14
+ """Add message to conversation."""
15
+
16
+ def get_history(self) -> List[Message]:
17
+ """Get conversation history."""
18
+ ```
19
+
20
+ ## Next Steps
21
+
22
+ - [Graph Reasoner](graph-reasoner.md) - Graph reasoner API
@@ -0,0 +1,32 @@
1
+ # Graph Reasoner API
2
+
3
+ API for graph reasoning utilities.
4
+
5
+ ## Classes
6
+
7
+ ### GraphReasoner
8
+
9
+ Provides utilities for reasoning about causal graphs.
10
+
11
+ ```python
12
+ class GraphReasoner:
13
+ def find_paths(self, source: str, target: str) -> List[List[str]]:
14
+ """Find all paths from source to target."""
15
+
16
+ def identify_confounders(self, X: str, Y: str) -> List[str]:
17
+ """Identify confounders for X -> Y."""
18
+ ```
19
+
20
+ ## Mathematical Foundation
21
+
22
+ Path finding uses graph algorithms:
23
+
24
+ $$Paths(X, Y) = \{p : X \to^* Y\}$$
25
+
26
+ Confounder identification:
27
+
28
+ $$Z \in Confounders(X, Y) \iff Z \to X \text{ and } Z \to Y$$
29
+
30
+ ## Next Steps
31
+
32
+ - [Batch Processor](batch-processor.md) - Batch processor API
@@ -0,0 +1,21 @@
1
+ # Utils API Reference
2
+
3
+ API reference for utility modules.
4
+
5
+ ## Overview
6
+
7
+ Utils API provides documentation for utility functions and classes. Most documentation is manual due to minimal docstrings in source code.
8
+
9
+ ## Modules
10
+
11
+ - **[Formatter](formatter.md)**: Formatter utilities
12
+ - **[Router](router.md)**: Router functionality
13
+ - **[Conversation](conversation.md)**: Conversation management
14
+ - **[Graph Reasoner](graph-reasoner.md)**: Graph reasoning
15
+ - **[Batch Processor](batch-processor.md)**: Batch processing
16
+ - **[Rate Limiter](rate-limiter.md)**: Rate limiting
17
+
18
+ ## Next Steps
19
+
20
+ - [Formatter](formatter.md) - Formatter API
21
+ - [Router](router.md) - Router API
@@ -0,0 +1,19 @@
1
+ # Router API
2
+
3
+ API for router functionality.
4
+
5
+ ## Classes
6
+
7
+ ### Router
8
+
9
+ Routes requests to appropriate agents.
10
+
11
+ ```python
12
+ class Router:
13
+ def select_agent(self, task: str) -> Agent:
14
+ """Select appropriate agent for task."""
15
+ ```
16
+
17
+ ## Next Steps
18
+
19
+ - [Conversation](conversation.md) - Conversation API
@@ -0,0 +1,97 @@
1
+ # Utility Functions API
2
+
3
+ API for smaller utility modules grouped together.
4
+
5
+ ## Formatter
6
+
7
+ Text formatting and output utilities.
8
+
9
+ ### Functions
10
+
11
+ - `format_causal_result()`: Format causal analysis results
12
+ - `format_graph()`: Format causal graph for display
13
+ - `format_counterfactuals()`: Format counterfactual scenarios
14
+
15
+ ### Usage
16
+
17
+ ```python
18
+ from utils.formatter import format_causal_result
19
+
20
+ result = agent.run("Analyze X -> Y")
21
+ formatted = format_causal_result(result)
22
+ ```
23
+
24
+ ## Batch Processor
25
+
26
+ Batch processing utilities for multiple tasks.
27
+
28
+ ### Usage
29
+
30
+ ```python
31
+ from utils.batch_processor import BatchProcessor
32
+
33
+ processor = BatchProcessor(agent)
34
+ results = processor.process_batch(tasks)
35
+ ```
36
+
37
+ ## Rate Limiter
38
+
39
+ Rate limiting for API calls.
40
+
41
+ ### Usage
42
+
43
+ ```python
44
+ from utils.rate_limiter import RateLimiter
45
+
46
+ limiter = RateLimiter(max_calls=100, period=60)
47
+ limiter.wait_if_needed()
48
+ ```
49
+
50
+ ## Agent Discovery
51
+
52
+ Agent discovery and registration.
53
+
54
+ ### Usage
55
+
56
+ ```python
57
+ from utils.agent_discovery import AgentDiscovery
58
+
59
+ discovery = AgentDiscovery()
60
+ agents = discovery.discover_agents()
61
+ ```
62
+
63
+ ## Tool Discovery
64
+
65
+ Tool discovery and registration.
66
+
67
+ ### Usage
68
+
69
+ ```python
70
+ from utils.tool_discovery import ToolDiscovery
71
+
72
+ discovery = ToolDiscovery()
73
+ tools = discovery.discover_tools()
74
+ ```
75
+
76
+ ## Edit Distance
77
+
78
+ Edit distance algorithms for text correction.
79
+
80
+ ### Mathematical Foundation
81
+
82
+ Levenshtein distance:
83
+
84
+ $$D_{lev}(s_1, s_2) = \min\{Insertions, Deletions, Substitutions\}$$
85
+
86
+ ### Usage
87
+
88
+ ```python
89
+ from utils.edit_distance import levenshtein_distance
90
+
91
+ distance = levenshtein_distance("hello", "hallo")
92
+ ```
93
+
94
+ ## Next Steps
95
+
96
+ - [Router](router.md) - Router API
97
+ - [Conversation](conversation.md) - Conversation API