cognite-neat 0.92.3__py3-none-any.whl → 0.93.0__py3-none-any.whl

cognite/neat/rules/importers/_rdf/_owl2rules/_owl2rules.py

@@ -1,65 +0,0 @@
-"""This module performs importing of various formats to one of serializations for which
-there are loaders to TransformationRules pydantic class."""
-
-from pathlib import Path
-
-from rdflib import DC, DCTERMS, OWL, RDF, RDFS, SKOS, Graph
-
-from cognite.neat.issues import IssueList
-from cognite.neat.issues.errors import FileReadError
-from cognite.neat.rules._shared import ReadRules
-from cognite.neat.rules.importers._base import BaseImporter
-from cognite.neat.rules.importers._rdf._shared import make_components_compliant
-from cognite.neat.rules.models import InformationInputRules
-
-from ._owl2classes import parse_owl_classes
-from ._owl2metadata import parse_owl_metadata
-from ._owl2properties import parse_owl_properties
-
-
-class OWLImporter(BaseImporter[InformationInputRules]):
-    """Convert OWL ontology to tables/ transformation rules / Excel file.
-
-        Args:
-            filepath: Path to OWL ontology
-
-    !!! Note
-        OWL Ontologies are information models which completeness varies. As such, constructing functional
-        data model directly will often be impossible, therefore the produced Rules object will be ill formed.
-        To avoid this, neat will automatically attempt to make the imported rules compliant by adding default
-        values for missing information, attaching dangling properties to default containers based on the
-        property type, etc.
-
-        One has to be aware that NEAT will be opinionated about how to make the ontology
-        compliant, and that the resulting rules may not be what you expect.
-
-    """
-
-    def __init__(self, filepath: Path):
-        self.owl_filepath = filepath
-
-    def to_rules(self) -> ReadRules[InformationInputRules]:
-        graph = Graph()
-        try:
-            graph.parse(self.owl_filepath)
-        except Exception as e:
-            return ReadRules(None, IssueList([FileReadError(self.owl_filepath, f"Could not parse owl file: {e}")]), {})
-
-        # bind key namespaces
-        graph.bind("owl", OWL)
-        graph.bind("rdf", RDF)
-        graph.bind("rdfs", RDFS)
-        graph.bind("dcterms", DCTERMS)
-        graph.bind("dc", DC)
-        graph.bind("skos", SKOS)
-
-        components = {
-            "Metadata": parse_owl_metadata(graph),
-            "Classes": parse_owl_classes(graph),
-            "Properties": parse_owl_properties(graph),
-        }
-
-        components = make_components_compliant(components)
-
-        rules = InformationInputRules.load(components)
-        return ReadRules(rules, IssueList(), {})

cognite/neat/rules/models/_types.py

@@ -1,96 +0,0 @@
-import warnings
-from collections.abc import Callable
-from typing import Annotated, Any
-
-import rdflib
-from pydantic import (
-    AfterValidator,
-    BeforeValidator,
-    Field,
-    HttpUrl,
-    StringConstraints,
-    TypeAdapter,
-    ValidationInfo,
-    WrapValidator,
-)
-from pydantic.functional_serializers import PlainSerializer
-
-from cognite.neat.issues.errors import RegexViolationError
-from cognite.neat.issues.warnings import RegexViolationWarning
-from cognite.neat.utils.regex_patterns import (
-    PATTERNS,
-    PREFIX_COMPLIANCE_REGEX,
-    PROPERTY_ID_COMPLIANCE_REGEX,
-    VERSION_COMPLIANCE_REGEX,
-)
-
-
-def _custom_error(exc_factory: Callable[[str | None, Exception], Any]) -> Any:
-    def _validator(value: Any, next_: Any, ctx: ValidationInfo) -> Any:
-        try:
-            return next_(value, ctx)
-        except Exception:
-            raise exc_factory(ctx.field_name, value) from None
-
-    return WrapValidator(_validator)
-
-
-StrOrListType = Annotated[
-    str | list[str],
-    BeforeValidator(lambda value: value.replace(", ", ",").split(",") if isinstance(value, str) and value else value),
-    PlainSerializer(
-        lambda value: ",".join([entry for entry in value if entry]) if isinstance(value, list) else value,
-        return_type=str,
-        when_used="unless-none",
-    ),
-]
-
-StrListType = Annotated[
-    list[str],
-    BeforeValidator(lambda value: [entry.strip() for entry in value.split(",")] if isinstance(value, str) else value),
-    PlainSerializer(
-        lambda value: ",".join([entry for entry in value if entry]), return_type=str, when_used="unless-none"
-    ),
-]
-
-NamespaceType = Annotated[
-    rdflib.Namespace,
-    BeforeValidator(
-        lambda value: (
-            rdflib.Namespace(TypeAdapter(HttpUrl).validate_python(value))
-            if value.endswith("#") or value.endswith("/")
-            else rdflib.Namespace(TypeAdapter(HttpUrl).validate_python(f"{value}/"))
-        )
-    ),
-]
-
-PrefixType = Annotated[
-    str,
-    StringConstraints(pattern=PREFIX_COMPLIANCE_REGEX),
-    _custom_error(lambda _, value: RegexViolationError(value, PREFIX_COMPLIANCE_REGEX)),
-]
-
-ExternalIdType = Annotated[
-    str,
-    Field(min_length=1, max_length=255),
-]
-
-VersionType = Annotated[
-    str,
-    StringConstraints(pattern=VERSION_COMPLIANCE_REGEX),
-    _custom_error(lambda _, value: RegexViolationError(value, VERSION_COMPLIANCE_REGEX)),
-]
-
-
-def _property_validation(value: str) -> str:
-    if not PATTERNS.property_id_compliance.match(value):
-        raise RegexViolationError(value, PROPERTY_ID_COMPLIANCE_REGEX)
-    if PATTERNS.more_than_one_alphanumeric.search(value):
-        warnings.warn(
-            RegexViolationWarning(value, PROPERTY_ID_COMPLIANCE_REGEX, "property", "MoreThanOneNonAlphanumeric"),
-            stacklevel=2,
-        )
-    return value
-
-
-PropertyType = Annotated[str, AfterValidator(_property_validation)]

cognite/neat/rules/models/entities/_constants.py

@@ -1,73 +0,0 @@
-import re
-import sys
-
-from pydantic import BaseModel
-
-if sys.version_info >= (3, 11):
-    from enum import StrEnum
-else:
-    from backports.strenum import StrEnum
-
-
-class EntityTypes(StrEnum):
-    view_non_versioned = "view_non_versioned"
-    subject = "subject"
-    predicate = "predicate"
-    object = "object"
-    class_ = "class"
-    parent_class = "parent_class"
-    property_ = "property"
-    object_property = "ObjectProperty"
-    data_property = "DatatypeProperty"
-    annotation_property = "AnnotationProperty"
-    object_value_type = "object_value_type"
-    data_value_type = "data_value_type"  # these are strings, floats, ...
-    xsd_value_type = "xsd_value_type"
-    dms_value_type = "dms_value_type"
-    dms_node = "dms_node"
-    view = "view"
-    reference_entity = "reference_entity"
-    container = "container"
-    datamodel = "datamodel"
-    undefined = "undefined"
-    multi_value_type = "multi_value_type"
-    asset = "asset"
-    relationship = "relationship"
-    edge = "edge"
-    reverse = "reverse"
-    unit = "unit"
-
-
-# ALLOWED
-_ALLOWED_PATTERN = r"[^a-zA-Z0-9-_.]"
-
-# FOR PARSING STRINGS:
-_PREFIX_REGEX = r"[a-zA-Z]+[a-zA-Z0-9-_.]*[a-zA-Z0-9]+"
-_SUFFIX_REGEX = r"[a-zA-Z0-9-_.]+[a-zA-Z0-9]|[-_.]*[a-zA-Z0-9]+"
-_VERSION_REGEX = r"[a-zA-Z0-9]([.a-zA-Z0-9_-]{0,41}[a-zA-Z0-9])?"
-_PROPERTY_REGEX = r"[a-zA-Z0-9][a-zA-Z0-9_-]*[a-zA-Z0-9]?"
-_ENTITY_ID_REGEX = rf"{_PREFIX_REGEX}:({_SUFFIX_REGEX})"
-_ENTITY_ID_REGEX_COMPILED = re.compile(rf"^(?P<prefix>{_PREFIX_REGEX}):(?P<suffix>{_SUFFIX_REGEX})$")
-_VERSIONED_ENTITY_REGEX_COMPILED = re.compile(
-    rf"^(?P<prefix>{_PREFIX_REGEX}):(?P<suffix>{_SUFFIX_REGEX})\(version=(?P<version>{_VERSION_REGEX})\)$"
-)
-_CLASS_ID_REGEX = rf"(?P<{EntityTypes.class_}>{_ENTITY_ID_REGEX})"
-_CLASS_ID_REGEX_COMPILED = re.compile(rf"^{_CLASS_ID_REGEX}$")
-_PROPERTY_ID_REGEX = rf"\((?P<{EntityTypes.property_}>{_ENTITY_ID_REGEX})\)"
-
-ENTITY_PATTERN = re.compile(r"^(?P<prefix>.*?):?(?P<suffix>[^(:]*)(\((?P<content>.+)\))?$")
-MULTI_VALUE_TYPE_PATTERN = re.compile(r"^(?P<types>.*?)(\((?P<content>[^)]+)\))?$")
-
-
-class _UndefinedType(BaseModel): ...
-
-
-class _UnknownType(BaseModel):
-    def __str__(self) -> str:
-        return "#N/A"
-
-
-# This is a trick to make Undefined and Unknown singletons
-Undefined = _UndefinedType()
-Unknown = _UnknownType()
-_PARSE = object()

cognite/neat/utils/regex_patterns.py

@@ -1,58 +0,0 @@
-import re
-from functools import cached_property
-
-MORE_THAN_ONE_NONE_ALPHANUMERIC_REGEX = r"([_-]{2,})"
-PREFIX_COMPLIANCE_REGEX = r"^([a-zA-Z]+)([a-zA-Z0-9]*[_-]{0,1}[a-zA-Z0-9_-]*)([a-zA-Z0-9]*)$"
-
-VIEW_ID_COMPLIANCE_REGEX = (
-    r"(?!^(Query|Mutation|Subscription|String|Int32|Int64|Int|Float32|Float64|Float|"
-    r"Timestamp|JSONObject|Date|Numeric|Boolean|PageInfo|File|Sequence|TimeSeries)$)"
-    r"(^[a-zA-Z][a-zA-Z0-9_]{0,253}[a-zA-Z0-9]?$)"
-)
-DMS_PROPERTY_ID_COMPLIANCE_REGEX = (
-    r"(?!^(space|externalId|createdTime|lastUpdatedTime|deletedTime|edge_id|"
-    r"node_id|project_id|property_group|seq|tg_table_name|extensions)$)"
-    r"(^[a-zA-Z][a-zA-Z0-9_]{0,253}[a-zA-Z0-9]?$)"
-)
-CLASS_ID_COMPLIANCE_REGEX = r"(?!^(Class|class)$)(^[a-zA-Z][a-zA-Z0-9._-]{0,253}[a-zA-Z0-9]?$)"
-PROPERTY_ID_COMPLIANCE_REGEX = r"^(\*)|(?!^(Property|property)$)(^[a-zA-Z][a-zA-Z0-9._-]{0,253}[a-zA-Z0-9]?$)"
-VERSION_COMPLIANCE_REGEX = r"^[a-zA-Z0-9]([.a-zA-Z0-9_-]{0,41}[a-zA-Z0-9])?$"
-
-
-# This pattern ignores commas inside brackets
-SPLIT_ON_COMMA_PATTERN = re.compile(r",(?![^(]*\))")
-# This pattern ignores equal signs inside brackets
-SPLIT_ON_EQUAL_PATTERN = re.compile(r"=(?![^(]*\))")
-
-
-class _Patterns:
-    @cached_property
-    def more_than_one_alphanumeric(self) -> re.Pattern:
-        return re.compile(MORE_THAN_ONE_NONE_ALPHANUMERIC_REGEX)
-
-    @cached_property
-    def prefix_compliance(self) -> re.Pattern[str]:
-        return re.compile(PREFIX_COMPLIANCE_REGEX)
-
-    @cached_property
-    def view_id_compliance(self) -> re.Pattern[str]:
-        return re.compile(VIEW_ID_COMPLIANCE_REGEX)
-
-    @cached_property
-    def dms_property_id_compliance(self) -> re.Pattern[str]:
-        return re.compile(DMS_PROPERTY_ID_COMPLIANCE_REGEX)
-
-    @cached_property
-    def class_id_compliance(self) -> re.Pattern[str]:
-        return re.compile(CLASS_ID_COMPLIANCE_REGEX)
-
-    @cached_property
-    def property_id_compliance(self) -> re.Pattern[str]:
-        return re.compile(PROPERTY_ID_COMPLIANCE_REGEX)
-
-    @cached_property
-    def version_compliance(self) -> re.Pattern[str]:
-        return re.compile(VERSION_COMPLIANCE_REGEX)
-
-
-PATTERNS = _Patterns()

cognite/neat/workflows/__init__.py

@@ -1,12 +0,0 @@
-from cognite.neat.workflows.base import BaseWorkflow
-from cognite.neat.workflows.manager import WorkflowManager
-from cognite.neat.workflows.model import FlowMessage, WorkflowFullStateReport, WorkflowStepDefinition, WorkflowStepEvent
-
-__all__ = [
-    "BaseWorkflow",
-    "WorkflowStepDefinition",
-    "WorkflowManager",
-    "WorkflowStepEvent",
-    "WorkflowFullStateReport",
-    "FlowMessage",
-]

cognite_neat-0.92.3.dist-info/RECORD

@@ -1,224 +0,0 @@
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cognite_neat-0.92.3.dist-info/entry_points.txt

@@ -1,3 +0,0 @@
-[console_scripts]
-neat=cognite.neat.app.main:run
-