cognite-neat 0.92.3__py3-none-any.whl → 0.93.0__py3-none-any.whl

cognite/neat/{graph → _graph}/_tracking/log.py

@@ -1,6 +1,6 @@
 from logging import getLogger
 
-from cognite.neat.issues import NeatError, NeatIssue, NeatWarning
+from cognite.neat._issues import NeatError, NeatIssue, NeatWarning
 
 from .base import Tracker
 

cognite/neat/{graph → _graph}/extractors/__init__.py

@@ -1,6 +1,7 @@
 from ._base import BaseExtractor
 from ._classic_cdf._assets import AssetsExtractor
 from ._classic_cdf._classic import ClassicGraphExtractor
+from ._classic_cdf._data_sets import DataSetExtractor
 from ._classic_cdf._events import EventsExtractor
 from ._classic_cdf._files import FilesExtractor
 from ._classic_cdf._labels import LabelsExtractor
@@ -17,6 +18,7 @@ __all__ = [
     "BaseExtractor",
     "AssetsExtractor",
     "ClassicGraphExtractor",
+    "DataSetExtractor",
     "MockGraphGenerator",
     "RelationshipsExtractor",
     "TimeSeriesExtractor",
@@ -43,6 +45,9 @@ TripleExtractors = (
     | RdfFileExtractor
     | DexpiExtractor
     | IODDExtractor
+    | DMSExtractor
+    | ClassicGraphExtractor
+    | DataSetExtractor
 )
 
 

cognite/neat/{graph → _graph}/extractors/_base.py

@@ -1,8 +1,8 @@
 from abc import abstractmethod
 from collections.abc import Iterable
 
-from cognite.neat.graph.models import Triple
-from cognite.neat.utils.auxiliary import class_html_doc
+from cognite.neat._graph.models import Triple
+from cognite.neat._utils.auxiliary import class_html_doc
 
 
 class BaseExtractor:

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_assets.py

@@ -7,7 +7,7 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import Asset, AssetFilter, AssetList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 from ._labels import LabelsExtractor

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_base.py

@@ -8,10 +8,10 @@ from typing import Generic, TypeVar
 from cognite.client.data_classes._base import CogniteResource
 from rdflib import XSD, Literal, Namespace, URIRef
 
-from cognite.neat.constants import DEFAULT_NAMESPACE
-from cognite.neat.graph.extractors._base import BaseExtractor
-from cognite.neat.graph.models import Triple
-from cognite.neat.utils.auxiliary import string_to_ideal_type
+from cognite.neat._constants import DEFAULT_NAMESPACE
+from cognite.neat._graph.extractors._base import BaseExtractor
+from cognite.neat._graph.models import Triple
+from cognite.neat._utils.auxiliary import string_to_ideal_type
 
 T_CogniteResource = TypeVar("T_CogniteResource", bound=CogniteResource)
 

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_classic.py

@@ -5,11 +5,11 @@ from typing import ClassVar, NamedTuple
 from cognite.client import CogniteClient
 from rdflib import Namespace
 
-from cognite.neat.constants import DEFAULT_NAMESPACE
-from cognite.neat.graph.extractors._base import BaseExtractor
-from cognite.neat.graph.models import Triple
-from cognite.neat.utils.collection_ import chunker
-from cognite.neat.utils.rdf_ import remove_namespace_from_uri
+from cognite.neat._constants import DEFAULT_NAMESPACE
+from cognite.neat._graph.extractors._base import BaseExtractor
+from cognite.neat._graph.models import Triple
+from cognite.neat._utils.collection_ import chunker
+from cognite.neat._utils.rdf_ import remove_namespace_from_uri
 
 from ._assets import AssetsExtractor
 from ._base import ClassicCDFBaseExtractor, InstanceIdPrefix

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_data_sets.py

@@ -7,7 +7,7 @@ from cognite.client.data_classes import DataSet, DataSetList
 from cognite.client.utils.useful_types import SequenceNotStr
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_events.py

@@ -6,7 +6,7 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import Event, EventFilter, EventList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_files.py

@@ -6,7 +6,7 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import FileMetadata, FileMetadataFilter, FileMetadataList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 from ._labels import LabelsExtractor

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_labels.py

@@ -7,7 +7,7 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import Label, LabelDefinition, LabelDefinitionList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_relationships.py

@@ -7,8 +7,8 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import Relationship, RelationshipList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
-from cognite.neat.utils.auxiliary import create_sha256_hash
+from cognite.neat._graph.models import Triple
+from cognite.neat._utils.auxiliary import create_sha256_hash
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 from ._labels import LabelsExtractor

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_sequences.py

@@ -6,7 +6,7 @@ from cognite.client import CogniteClient
 from cognite.client.data_classes import Sequence, SequenceFilter, SequenceList
 from rdflib import RDF, Literal, Namespace
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 

cognite/neat/{graph → _graph}/extractors/_classic_cdf/_timeseries.py

@@ -7,7 +7,7 @@ from cognite.client.data_classes import TimeSeries, TimeSeriesFilter, TimeSeries
 from pydantic import AnyHttpUrl, ValidationError
 from rdflib import RDF, Literal, Namespace, URIRef
 
-from cognite.neat.graph.models import Triple
+from cognite.neat._graph.models import Triple
 
 from ._base import DEFAULT_SKIP_METADATA_VALUES, ClassicCDFBaseExtractor, InstanceIdPrefix
 

cognite/neat/{graph → _graph}/extractors/_dexpi.py

@@ -6,11 +6,11 @@ from xml.etree.ElementTree import Element
 
 from rdflib import RDF, RDFS, XSD, Literal, Namespace, URIRef
 
-from cognite.neat.constants import DEFAULT_NAMESPACE
-from cognite.neat.graph.extractors._base import BaseExtractor
-from cognite.neat.graph.models import Triple
-from cognite.neat.utils.rdf_ import as_neat_compliant_uri
-from cognite.neat.utils.xml_ import get_children, iterate_tree
+from cognite.neat._constants import DEFAULT_NAMESPACE
+from cognite.neat._graph.extractors._base import BaseExtractor
+from cognite.neat._graph.models import Triple
+from cognite.neat._utils.rdf_ import as_neat_compliant_uri
+from cognite.neat._utils.xml_ import get_children, iterate_tree
 
 DEXPI = Namespace("http://sandbox.dexpi.org/rdl/")
 QUDT = Namespace("https://qudt.org/vocab/unit/")

cognite/neat/{graph → _graph}/extractors/_dms.py

@@ -7,9 +7,9 @@ from cognite.client.data_classes.data_modeling import DataModelIdentifier
 from cognite.client.data_classes.data_modeling.instances import Instance, PropertyValue
 from rdflib import RDF, XSD, Literal, Namespace, URIRef
 
-from cognite.neat.constants import DEFAULT_SPACE_URI
-from cognite.neat.graph.models import Triple
-from cognite.neat.issues.errors import ResourceRetrievalError
+from cognite.neat._constants import DEFAULT_SPACE_URI
+from cognite.neat._graph.models import Triple
+from cognite.neat._issues.errors import ResourceRetrievalError
 
 from ._base import BaseExtractor
 

cognite/neat/_graph/extractors/_iodd.py

@@ -0,0 +1,402 @@
+import re
+import uuid
+import xml.etree.ElementTree as ET
+from functools import cached_property
+from pathlib import Path
+from typing import ClassVar
+from typing import Literal as LiteralType
+from xml.etree.ElementTree import Element
+
+from rdflib import RDF, XSD, Literal, Namespace, URIRef
+
+from cognite.neat._constants import DEFAULT_NAMESPACE
+from cognite.neat._graph.extractors._base import BaseExtractor
+from cognite.neat._graph.models import Triple
+from cognite.neat._issues.errors import FileReadError, NeatValueError
+from cognite.neat._utils.rdf_ import remove_namespace_from_uri
+from cognite.neat._utils.text import to_camel
+from cognite.neat._utils.xml_ import get_children
+
+IODD = Namespace("http://www.io-link.com/IODD/2010/10/")
+XSI = Namespace("http://www.w3.org/2001/XMLSchema-instance/")
+
+XSI_XML_PREFIX = "{http://www.w3.org/2001/XMLSchema-instance}"
+
+
+class IODDExtractor(BaseExtractor):
+    """
+    IODD-XML extractor of RDF triples
+
+    Each IODD sheet describes an IODD device. This extractor extracts rdf triples that describes the device, and the
+    sensors connected to the device.
+    This data is described under the elements "DeviceIdentity" and "ProcessDataCollection".
+    In addition, triples extacted from "DeviceIdentity" and
+    "ProcessDataCollection" may reference "Text" elements which are found under "ExternalTextCollection". Edges to
+    these Text element nodes are also extracted.
+
+    Args:
+        root: XML root element of IODD XML file.
+        namespace: Optional custom namespace to use for extracted triples that define data
+                    model instances. Defaults to DEFAULT_NAMESPACE.
+        device_id: Optional user specified unique id/tag for actual equipment instance. If not provided, a randomly
+        generated UUID will be used. The device_id must be WEB compliant,
+        meaning that the characters /&?=: % are not allowed
+    """
+
+    device_elements_with_text_nodes: ClassVar[list[str]] = ["VendorText", "VendorUrl", "DeviceName", "DeviceFamily"]
+    std_variable_elements_to_extract: ClassVar[list[str]] = ["V_SerialNumber", "V_ApplicationSpecificTag"]
+    text_elements_language: LiteralType["en", "de"] = "en"
+
+    def __init__(
+        self,
+        root: Element,
+        namespace: Namespace | None = None,
+        device_id: str | None = None,
+    ):
+        self.root = root
+        self.namespace = namespace or DEFAULT_NAMESPACE
+
+        if device_id and device_id != re.sub(r"[^a-zA-Z0-9-_.]", "", device_id):
+            raise NeatValueError("Specified device_id is not web compliant. Please exclude characters: /&?=: %")
+
+        self.device_id = (
+            self.namespace[device_id] if device_id else self.namespace[f"Device_{str(uuid.uuid4()).replace('-', '_')}"]
+        )
+
+    @cached_property
+    def _text_id_2value_mapping(self) -> dict[str, str]:
+        """
+        !!! note used for "Prototype Solution" !!!
+        A mapping for text_id references to Text elements under ExternalTextCollection.
+        The mapping can be used to find the Text element with matching id, and returns
+        the value associated with the Text element.
+        """
+        mapping = {}
+        if et_root := get_children(
+            self.root, "ExternalTextCollection", ignore_namespace=True, include_nested_children=True, no_children=1
+        ):
+            if language_element := get_children(et_root[0], "PrimaryLanguage", ignore_namespace=True, no_children=1):
+                if (
+                    language_element[0].attrib.get("{http://www.w3.org/XML/1998/namespace}lang")
+                    == self.text_elements_language
+                ):
+                    if text_elements := get_children(
+                        language_element[0], child_tag="Text", ignore_namespace=True, include_nested_children=True
+                    ):
+                        for element in text_elements:
+                            if id := element.attrib.get("id"):
+                                if value := element.attrib.get("value"):
+                                    mapping[id] = value
+        return mapping
+
+    @classmethod
+    def from_file(cls, filepath: Path, namespace: Namespace | None = None, device_id: str | None = None):
+        if filepath.suffix != ".xml":
+            raise FileReadError(filepath, "File is not XML.")
+        return cls(ET.parse(filepath).getroot(), namespace, device_id)
+
+    @classmethod
+    def _from_root2triples(cls, root: Element, namespace: Namespace, device_id: URIRef) -> list[Triple]:
+        """Loops through the relevant elements of the IODD XML sheet to create rdf triples that describes the IODD
+        device by starting at the root element.
+        """
+        triples: list[Triple] = []
+
+        # Extract DeviceIdentity triples
+        if di_root := get_children(
+            root, "DeviceIdentity", ignore_namespace=True, include_nested_children=True, no_children=1
+        ):
+            triples.extend(cls._iodd_device_identity2triples(di_root[0], namespace, device_id))
+
+        # Extract VariableCollection triples -
+        # this element holds the information about the sensors connected to the device that collects data such as
+        # temperature, voltage, leakage etc.
+        if vc_root := get_children(
+            root, "VariableCollection", ignore_namespace=True, include_nested_children=True, no_children=1
+        ):
+            triples.extend(cls._variables_data_collection2triples(vc_root[0], namespace, device_id))
+
+        if pc_root := get_children(
+            root, "ProcessDataCollection", ignore_namespace=True, include_nested_children=True, no_children=1
+        ):
+            triples.extend(cls._process_data_collection2triples(pc_root[0], namespace, device_id))
+
+        if et_root := get_children(
+            root, "ExternalTextCollection", ignore_namespace=True, include_nested_children=True, no_children=1
+        ):
+            triples.extend(cls._text_elements2triples(et_root[0], namespace))
+
+        return triples
+
+    @classmethod
+    def _process_data_collection2triples(
+        cls, pc_root: Element, namespace: Namespace, device_id: URIRef
+    ) -> list[Triple]:
+        """
+        Will only collect ProcessDataIn elements at this point. The data from the IO-master is transmitted as an
+        array related to a ProcessDataIn item.
+        """
+        triples: list[Triple] = []
+
+        if process_data_in := get_children(
+            pc_root, "ProcessDataIn", ignore_namespace=True, include_nested_children=True
+        ):
+            for process_data_element in process_data_in:
+                if p_id := process_data_element.attrib.get("id"):
+                    device_id_str = remove_namespace_from_uri(device_id)
+                    process_data_in_id = namespace[f"{device_id_str}.{p_id}"]
+
+                    # Create ProcessDataIn node
+                    triples.append((process_data_in_id, RDF.type, IODD.ProcessDataIn))
+
+                    # Create connection from device to node
+                    triples.append((device_id, IODD.processDataIn, process_data_in_id))
+
+                    # Connect record items (essentially an array of indexed variables) to the ProcessDataIn node
+                    triples.extend(cls._process_data_in_records2triples(process_data_element, process_data_in_id))
+
+        return triples
+
+    @classmethod
+    def _device_2text_elements_edges(cls, di_root: Element, id: URIRef, namespace: Namespace) -> list[Triple]:
+        """
+        Create edges from the device node to text nodes.
+        """
+        triples: list[Triple] = []
+
+        for element_tag in cls.device_elements_with_text_nodes:
+            if child := get_children(
+                di_root, child_tag=element_tag, ignore_namespace=True, include_nested_children=True, no_children=1
+            ):
+                if text_id := child[0].attrib.get("textId"):
+                    # Create connection from device to textId node
+                    element_tag = to_camel(element_tag)
+                    triples.append((id, IODD[element_tag], namespace[text_id]))
+
+        return triples
+
+    @classmethod
+    def _text_elements2triples(cls, et_root: Element, namespace: Namespace) -> list[Triple]:
+        """
+        This method extracts all text item triples under the ExternalTextCollection element. This will create a node
+        for each text item, and add the text value as a property to the node.
+        """
+        triples: list[Triple] = []
+
+        if language_element := get_children(et_root, "PrimaryLanguage", ignore_namespace=True, no_children=1):
+            if (
+                language_element[0].attrib.get("{http://www.w3.org/XML/1998/namespace}lang")
+                == cls.text_elements_language
+            ):
+                if text_elements := get_children(
+                    language_element[0], child_tag="Text", ignore_namespace=True, include_nested_children=True
+                ):
+                    for element in text_elements:
+                        if id := element.attrib.get("id"):
+                            text_id = namespace[id]
+
+                            # Create Text node
+                            triples.append((text_id, RDF.type, IODD.TextObject))
+
+                            # Resolve text value related to the text item
+                            if value := element.attrib.get("value"):
+                                triples.append((text_id, IODD.value, Literal(value)))
+        return triples
+
+    @classmethod
+    def _std_variables2triples(cls, vc_root: Element, namespace: Namespace, device_id: URIRef) -> list[Triple]:
+        """
+        For simplicity, only extract the two items we want for this use case - V_ApplicationSpecificTag and
+        V_SerialNumber
+        """
+        triples: list[Triple] = []
+
+        if std_variable_elements := get_children(vc_root, child_tag="StdVariableRef", ignore_namespace=True):
+            for element in std_variable_elements:
+                if id := element.attrib.get("id"):
+                    if id in cls.std_variable_elements_to_extract:
+                        if object := element.attrib.get("defaultValue"):
+                            predicate = to_camel(id.replace("V_", ""))
+                            triples.append((device_id, IODD[predicate], Literal(object)))
+        return triples
+
+    @classmethod
+    def _variables_data_collection2triples(
+        cls, vc_root: Element, namespace: Namespace, device_id: URIRef
+    ) -> list[Triple]:
+        """
+        VariableCollection contains elements that references Variables and StdVariables. The StdVariables
+        can be resolved by looking up the ID in the IODD-StandardDefinitions1.1.xml sheet.
+
+        The Variable elements are descriptions of the sensors collecting data for the device.
+        """
+        triples: list[Triple] = []
+
+        # StdVariableRef elements of interest
+        triples.extend(cls._std_variables2triples(vc_root, namespace, device_id))
+
+        # Variable elements (these are the descriptions of the sensors)
+        if variable_elements := get_children(vc_root, child_tag="Variable", ignore_namespace=True):
+            for element in variable_elements:
+                if id := element.attrib.get("id"):
+                    device_id_str = remove_namespace_from_uri(device_id)
+                    variable_id = f"{device_id_str}.{id}"
+
+                    # Create connection from device node to time series
+                    triples.append((device_id, IODD.variable, Literal(variable_id, datatype=XSD["timeseries"])))
+
+        return triples
+
+    @classmethod
+    def _iodd_device_identity2triples(cls, di_root: Element, namespace: Namespace, device_id: URIRef) -> list[Triple]:
+        """
+        Properties and metadata related to the IO Device are described under the 'DeviceIdentity' element in the XML.
+        This method extracts the triples that describe the device's identity which is found under the
+        DeviceIdentity element and its child elements.
+
+        """
+        triples: list[Triple] = []
+
+        # Create rdf type triple for IODD
+        triples.append(
+            (
+                device_id,
+                RDF.type,
+                IODD.IoddDevice,
+            )
+        )
+
+        for attribute_name, attribute_value in di_root.attrib.items():
+            triples.append((device_id, IODD[attribute_name], Literal(attribute_value)))
+
+        triples.extend(cls._device_2text_elements_edges(di_root, device_id, namespace))
+        return triples
+
+    @classmethod
+    def _process_data_in_records2triples(cls, pc_in_root: Element, process_data_in_id: URIRef):
+        """
+        Extract RecordItems related to a ProcessDataIn element. Each record item is indexed. Will use this index
+        as the identifier for the time series in CDF.
+        """
+        triples: list[Triple] = []
+
+        if record_items := get_children(pc_in_root, "RecordItem", ignore_namespace=True, include_nested_children=True):
+            for record in record_items:
+                if index := record.attrib.get("subindex"):
+                    process_id_str = remove_namespace_from_uri(process_data_in_id)
+                    record_id = f"{process_id_str}.{index}"
+                    # Create connection from device node to time series
+                    triples.append((process_data_in_id, IODD.variable, Literal(record_id, datatype=XSD["timeseries"])))
+
+        return triples
+
+    def extract(self) -> list[Triple]:
+        """
+        Extract RDF triples from IODD XML
+        """
+        return self._from_root2triples(self.root, self.namespace, self.device_id)
+
+    def _variable2info(self, variable_element: Element) -> dict:
+        """
+        !!! note used for "Prototype Solution" !!!
+        Extracts information relevant to a CDF time series type from a Variable element
+        """
+
+        variable_dict = {}
+
+        if name := get_children(
+            variable_element, child_tag="Name", ignore_namespace=True, include_nested_children=False, no_children=1
+        ):
+            if text_id := name[0].get("textId"):
+                variable_dict["name"] = self._text_id_2value_mapping[text_id]
+        if description := get_children(
+            variable_element,
+            child_tag="Description",
+            ignore_namespace=True,
+            include_nested_children=False,
+            no_children=1,
+        ):
+            if text_id := description[0].get("textId"):
+                variable_dict["description"] = self._text_id_2value_mapping[text_id]
+        if data_type := get_children(
+            variable_element, child_tag="Datatype", ignore_namespace=True, include_nested_children=False, no_children=1
+        ):
+            variable_dict["data_type"] = data_type[0].attrib[f"{XSI_XML_PREFIX}type"]
+
+        return variable_dict
+
+    def _process_record2info(self, record_element: Element) -> dict:
+        """
+        !!! note used for "Prototype Solution" !!!
+        Extracts information relevant to a CDF time series type from a Record element
+        """
+        record_dict = {}
+
+        if name := get_children(
+            record_element, child_tag="Name", ignore_namespace=True, include_nested_children=False, no_children=1
+        ):
+            if text_id := name[0].get("textId"):
+                record_dict["name"] = self._text_id_2value_mapping[text_id]
+        if description := get_children(
+            record_element, child_tag="Description", ignore_namespace=True, include_nested_children=False, no_children=1
+        ):
+            if text_id := description[0].get("textId"):
+                record_dict["description"] = self._text_id_2value_mapping[text_id]
+        if data_type := get_children(
+            record_element,
+            child_tag="SimpleDatatype",
+            ignore_namespace=True,
+            include_nested_children=False,
+            no_children=1,
+        ):
+            record_dict["data_type"] = data_type[0].attrib[f"{XSI_XML_PREFIX}type"]
+        if index := record_element.attrib.get("subindex"):
+            record_dict["index"] = index
+
+        return record_dict
+
+    def _extract_enhanced_ts_information(self, json_file_path: Path):
+        """
+        Extract additional information like name, description and data type for Variables and ProcessDataIn
+        record elements in the IODD. The purpose is for the result gile to be used for enhancing time series with more
+        information when they are created in CDF.
+
+        Args:
+            json_file_path: file path for where to write the extracted information about all time series
+                            in the IODD
+
+        !!! note "Prototype Solution" !!!
+        This is an intermediate solution while better support for adding this information directly
+        into the knowledge graph for the timeseries node type is under development.
+        """
+        import json
+
+        ts_ext_id2_info_map = {}
+
+        # Variable elements (these are the descriptions of the sensors)
+        if variable_elements := get_children(
+            self.root, child_tag="Variable", ignore_namespace=True, include_nested_children=True
+        ):
+            for element in variable_elements:
+                if id := element.attrib.get("id"):
+                    device_id_str = remove_namespace_from_uri(self.device_id)
+                    variable_id = f"{device_id_str}.{id}"
+                    ts_ext_id2_info_map[variable_id] = self._variable2info(element)
+
+        if process_data_in := get_children(
+            self.root, "ProcessDataIn", ignore_namespace=True, include_nested_children=True
+        ):
+            for process_data_element in process_data_in:
+                if p_id := process_data_element.attrib.get("id"):
+                    device_id_str = remove_namespace_from_uri(self.device_id)
+                    process_data_in_id = f"{device_id_str}.{p_id}"
+                    if record_items := get_children(
+                        process_data_element, "RecordItem", ignore_namespace=True, include_nested_children=True
+                    ):
+                        for record in record_items:
+                            if index := record.attrib.get("subindex"):
+                                process_record_id = f"{process_data_in_id}.{index}"
+                                ts_ext_id2_info_map[process_record_id] = self._process_record2info(record)
+
+        with Path.open(json_file_path, "w") as fp:
+            json.dump(ts_ext_id2_info_map, fp, indent=2)

cognite/neat/{graph → _graph}/extractors/_mock_graph_generator.py

@@ -11,13 +11,14 @@ import numpy
 import pandas as pd
 from rdflib import RDF, Literal, Namespace, URIRef
 
-from cognite.neat.graph.models import Triple
-from cognite.neat.rules.analysis import InformationAnalysis
-from cognite.neat.rules.models import DMSRules, InformationRules
-from cognite.neat.rules.models.data_types import DataType
-from cognite.neat.rules.models.entities import ClassEntity, EntityTypes
-from cognite.neat.rules.models.information import InformationProperty
-from cognite.neat.utils.rdf_ import remove_namespace_from_uri
+from cognite.neat._graph.models import Triple
+from cognite.neat._rules._constants import EntityTypes
+from cognite.neat._rules.analysis import InformationAnalysis
+from cognite.neat._rules.models import DMSRules, InformationRules
+from cognite.neat._rules.models.data_types import DataType
+from cognite.neat._rules.models.entities import ClassEntity
+from cognite.neat._rules.models.information import InformationProperty
+from cognite.neat._utils.rdf_ import remove_namespace_from_uri
 
 from ._base import BaseExtractor
 
@@ -43,7 +44,7 @@ class MockGraphGenerator(BaseExtractor):
     ):
         if isinstance(rules, DMSRules):
             # fixes potential issues with circular dependencies
-            from cognite.neat.rules.transformers import DMSToInformation
+            from cognite.neat._rules.transformers import DMSToInformation
 
             self.rules = DMSToInformation().transform(rules).rules
         elif isinstance(rules, InformationRules):