coding-os 0.3.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- adapters/claude/README.md +6 -0
- adapters/claude/_install_helpers/extract_stacks.py +43 -0
- adapters/claude/_install_helpers/update_mcp_json.py +75 -0
- adapters/claude/adapter.yaml +164 -0
- adapters/claude/hooks/README.md +40 -0
- adapters/claude/hooks/agent_memory_sync.py +131 -0
- adapters/claude/hooks/ensure-agent-memory-link.sh +36 -0
- adapters/claude/hooks/sync-agent-memory.sh +21 -0
- adapters/claude/install.sh +86 -0
- adapters/claude/sdk_dispatcher.py +871 -0
- adapters/claude/settings.local.template.json +31 -0
- adapters/claude/settings.template.json +808 -0
- adapters/claude/update_mcp_json.py +85 -0
- adapters/codex/adapter.yaml +254 -0
- adapters/codex/chat_provider.py +230 -0
- adapters/codex/commands/formula-f1.md +129 -0
- adapters/codex/commands/formula-f10.md +100 -0
- adapters/codex/commands/formula-f11.md +123 -0
- adapters/codex/commands/formula-f2.md +139 -0
- adapters/codex/commands/formula-f3.md +127 -0
- adapters/codex/commands/formula-f4.md +101 -0
- adapters/codex/commands/formula-f5.md +135 -0
- adapters/codex/commands/formula-f6.md +147 -0
- adapters/codex/commands/formula-f7.md +111 -0
- adapters/codex/commands/formula-f8.md +133 -0
- adapters/codex/commands/formula-f9.md +112 -0
- adapters/codex/enable_codex_hooks.py +94 -0
- adapters/codex/ensure_codex_mcp.py +124 -0
- adapters/codex/hooks/codex-merge-hook-output.py +72 -0
- adapters/codex/hooks/codex-normalize-edit.py +96 -0
- adapters/codex/hooks/codex-postedit-dispatch.sh +75 -0
- adapters/codex/hooks/codex-posttool-dispatch.sh +70 -0
- adapters/codex/hooks/codex-preedit-dispatch.sh +83 -0
- adapters/codex/hooks/codex-pretool-dispatch.sh +82 -0
- adapters/codex/hooks/codex-sessionend-dispatch.sh +20 -0
- adapters/codex/hooks/codex-sessionstart-dispatch.sh +68 -0
- adapters/codex/hooks/codex-stop-dispatch.sh +73 -0
- adapters/codex/hooks/codex-userpromptsubmit-dispatch.sh +74 -0
- adapters/codex/hooks.template.json +208 -0
- adapters/codex/install.sh +83 -0
- adapters/codex/sdk_dispatcher.py +449 -0
- board_os/__init__.py +39 -0
- board_os/_agent_runtime.py +256 -0
- board_os/config.py +421 -0
- board_os/git_coherence.py +107 -0
- board_os/hub_adapter_manifest.py +140 -0
- board_os/mcp_tools.py +3228 -0
- board_os/migration.py +166 -0
- board_os/parser.py +317 -0
- board_os/presence.py +156 -0
- board_os/sync.py +320 -0
- board_os/transition_gates.py +224 -0
- board_os/transition_gates_cli.py +272 -0
- board_os/transition_gates_validator.py +551 -0
- board_os/verify_suites.py +126 -0
- board_os/verify_suites_cli.py +328 -0
- board_os/workflow.py +967 -0
- cli/__init__.py +0 -0
- cli/_data_types.py +248 -0
- cli/_init_helpers.py +587 -0
- cli/_resources.py +100 -0
- cli/adapter_registry.py +239 -0
- cli/add_stack.py +315 -0
- cli/aggregator.py +438 -0
- cli/board_commands.py +1218 -0
- cli/brain_commands.py +255 -0
- cli/cognition.py +345 -0
- cli/config_composer.py +349 -0
- cli/core_version.py +41 -0
- cli/cron_commands.py +278 -0
- cli/db_reset.py +298 -0
- cli/doc_commands.py +111 -0
- cli/doctor.py +2953 -0
- cli/doctor_board.py +365 -0
- cli/doctor_extras.py +1121 -0
- cli/doctor_graph.py +608 -0
- cli/doctor_tokens.py +254 -0
- cli/graph_commands.py +1265 -0
- cli/hook_renderer.py +393 -0
- cli/hub_commands.py +580 -0
- cli/list_adapters.py +79 -0
- cli/list_stacks.py +105 -0
- cli/logs_commands.py +89 -0
- cli/main.py +3070 -0
- cli/materialize_file.py +65 -0
- cli/mcp_start.py +153 -0
- cli/module_commands.py +513 -0
- cli/pr_commands.py +2024 -0
- cli/preset_commands.py +126 -0
- cli/preset_registry.py +171 -0
- cli/project_overrides.py +119 -0
- cli/registry.py +365 -0
- cli/remove_stack.py +492 -0
- cli/renderer.py +620 -0
- cli/setup.py +464 -0
- cli/skill_commands.py +689 -0
- cli/skill_registry.py +235 -0
- cli/skills_list.py +332 -0
- cli/stack_lint.py +351 -0
- cli/stack_registry.py +688 -0
- cli/subsystems.py +335 -0
- cli/sync_all.py +310 -0
- cli/tail_command.py +410 -0
- cli/update.py +608 -0
- cli/verify_since_edit.py +439 -0
- coding_os-0.3.2.dist-info/METADATA +508 -0
- coding_os-0.3.2.dist-info/RECORD +1304 -0
- coding_os-0.3.2.dist-info/WHEEL +5 -0
- coding_os-0.3.2.dist-info/entry_points.txt +5 -0
- coding_os-0.3.2.dist-info/licenses/LICENSE +201 -0
- coding_os-0.3.2.dist-info/top_level.txt +10 -0
- core/__init__.py +0 -0
- core/board_os/__init__.py +39 -0
- core/board_os/_agent_runtime.py +256 -0
- core/board_os/config.py +421 -0
- core/board_os/git_coherence.py +107 -0
- core/board_os/hub_adapter_manifest.py +140 -0
- core/board_os/mcp_tools.py +3228 -0
- core/board_os/migration.py +166 -0
- core/board_os/parser.py +317 -0
- core/board_os/presence.py +156 -0
- core/board_os/sync.py +320 -0
- core/board_os/transition-gates.yaml +176 -0
- core/board_os/transition_gates.py +224 -0
- core/board_os/transition_gates_cli.py +272 -0
- core/board_os/transition_gates_validator.py +551 -0
- core/board_os/verify-suites.yaml +113 -0
- core/board_os/verify_suites.py +126 -0
- core/board_os/verify_suites_cli.py +328 -0
- core/board_os/workflow.py +967 -0
- core/commands/board.md +27 -0
- core/commands/classify.md +23 -0
- core/commands/compose.md +23 -0
- core/commands/daily.md +31 -0
- core/commands/diagnose.md +7 -0
- core/commands/memory-search.md +23 -0
- core/commands/new-project.md +33 -0
- core/commands/retro.md +38 -0
- core/commands/review.md +14 -0
- core/commands/task.md +17 -0
- core/commands/verify.md +34 -0
- core/docs/thinking_os-final-edition.md +1449 -0
- core/doctor-config.yaml +74 -0
- core/graph_os/__init__.py +29 -0
- core/graph_os/backend.py +233 -0
- core/graph_os/backends/__init__.py +13 -0
- core/graph_os/backends/sqlite_backend.py +1053 -0
- core/graph_os/bench/__init__.py +17 -0
- core/graph_os/bench/fixtures.py +56 -0
- core/graph_os/bench/harness.py +95 -0
- core/graph_os/bench/persian_precision.py +142 -0
- core/graph_os/bench/scale_500k.py +120 -0
- core/graph_os/bench/token_cost.py +170 -0
- core/graph_os/bench/viewer_fps.py +110 -0
- core/graph_os/communities.py +410 -0
- core/graph_os/enterprise.py +218 -0
- core/graph_os/entry_points.py +226 -0
- core/graph_os/extractors/__init__.py +25 -0
- core/graph_os/extractors/code_generic.py +914 -0
- core/graph_os/extractors/code_go.py +1422 -0
- core/graph_os/extractors/code_json.py +340 -0
- core/graph_os/extractors/code_php.py +979 -0
- core/graph_os/extractors/code_python.py +1454 -0
- core/graph_os/extractors/code_shell.py +538 -0
- core/graph_os/extractors/code_toml.py +302 -0
- core/graph_os/extractors/code_ts.py +1665 -0
- core/graph_os/extractors/code_yaml.py +394 -0
- core/graph_os/extractors/contracts.py +1592 -0
- core/graph_os/extractors/md_links.py +890 -0
- core/graph_os/extractors/task_deps.py +345 -0
- core/graph_os/groups/__init__.py +22 -0
- core/graph_os/groups/cross_repo.py +156 -0
- core/graph_os/groups/manifest.py +141 -0
- core/graph_os/ingest/__init__.py +19 -0
- core/graph_os/ingest/base.py +306 -0
- core/graph_os/ingest/github.py +112 -0
- core/graph_os/ingest/zip.py +95 -0
- core/graph_os/toolchain.py +393 -0
- core/graph_os/tools/__init__.py +9 -0
- core/graph_os/tools/graph.py +5573 -0
- core/graph_os/tools/reindex_dispatch.py +730 -0
- core/graph_os/tree_sitter_overlay.py +235 -0
- core/graph_os/types.py +252 -0
- core/graph_os/vec_index.py +277 -0
- core/graph_os/viewer/__init__.py +12 -0
- core/graph_os/viewer/exporter.py +93 -0
- core/graph_os/viewer/template.py +189 -0
- core/hooks/_helpers/_paths.py +40 -0
- core/hooks/_helpers/advance_role.py +72 -0
- core/hooks/_helpers/auto_compose.py +228 -0
- core/hooks/_helpers/auto_validate_lessons.py +55 -0
- core/hooks/_helpers/branch_guard_check.py +796 -0
- core/hooks/_helpers/check_commit_message.py +108 -0
- core/hooks/_helpers/check_dangerous_rm.py +80 -0
- core/hooks/_helpers/check_git_bypass.py +154 -0
- core/hooks/_helpers/check_git_destructive.py +77 -0
- core/hooks/_helpers/check_settings_write.py +97 -0
- core/hooks/_helpers/consume_override.py +51 -0
- core/hooks/_helpers/context_budget.py +77 -0
- core/hooks/_helpers/cos_say_json.py +103 -0
- core/hooks/_helpers/destructive_edit_check.py +163 -0
- core/hooks/_helpers/detect_status_transition.py +82 -0
- core/hooks/_helpers/digest_regen.py +56 -0
- core/hooks/_helpers/doc_sync_check.py +498 -0
- core/hooks/_helpers/drain_embedding_outbox.py +52 -0
- core/hooks/_helpers/extract_additional_context.py +51 -0
- core/hooks/_helpers/extract_commit_msg_arg.py +74 -0
- core/hooks/_helpers/git_command_parse.py +424 -0
- core/hooks/_helpers/git_settings_fields.py +47 -0
- core/hooks/_helpers/graph_context_match.py +37 -0
- core/hooks/_helpers/graph_marker_check.py +70 -0
- core/hooks/_helpers/jit_recall.py +56 -0
- core/hooks/_helpers/json_field.py +41 -0
- core/hooks/_helpers/narrative_signal.py +59 -0
- core/hooks/_helpers/observation_count.py +31 -0
- core/hooks/_helpers/pre_commit_batch.py +177 -0
- core/hooks/_helpers/pre_commit_fake_input.py +42 -0
- core/hooks/_helpers/presence_gc.py +102 -0
- core/hooks/_helpers/presence_write.py +167 -0
- core/hooks/_helpers/recover_indirect.py +35 -0
- core/hooks/_helpers/routing_evolution.py +104 -0
- core/hooks/_helpers/session_recap.py +72 -0
- core/hooks/_helpers/skill_primer.py +229 -0
- core/hooks/_helpers/task_sync.py +59 -0
- core/hooks/_helpers/tool_failure_capture.py +147 -0
- core/hooks/_helpers/trajectory_autosnap.py +278 -0
- core/hooks/_helpers/trajectory_startup.py +62 -0
- core/hooks/_helpers/turn_summary.py +82 -0
- core/hooks/_helpers/validate_task_frontmatter.py +98 -0
- core/hooks/_helpers/wip_limit_check.py +103 -0
- core/hooks/_helpers/wip_lines.py +53 -0
- core/hooks/_helpers/work_log_append.py +89 -0
- core/hooks/_helpers/wrap_dispatch_output.py +82 -0
- core/hooks/advance-role.sh +48 -0
- core/hooks/agent-presence.sh +179 -0
- core/hooks/auto-brain-decay.sh +184 -0
- core/hooks/auto-compose-roles.sh +83 -0
- core/hooks/auto-graph-reconcile-shell.sh +119 -0
- core/hooks/auto-regen-doc-index.sh +120 -0
- core/hooks/auto-reindex-docs.sh +130 -0
- core/hooks/auto-task-sync.sh +56 -0
- core/hooks/auto-trace-rotate.sh +88 -0
- core/hooks/block-bad-patterns.sh +212 -0
- core/hooks/block-dangerous-commands.sh +182 -0
- core/hooks/block-hardcoded-literals.sh +90 -0
- core/hooks/block-migration-conflict.sh +114 -0
- core/hooks/block-protected-files.sh +129 -0
- core/hooks/block-secrets.sh +185 -0
- core/hooks/block-shared-tree-edit.sh +75 -0
- core/hooks/block-uv-heredoc.sh +78 -0
- core/hooks/branch-guard.sh +122 -0
- core/hooks/capture-observation.sh +76 -0
- core/hooks/capture-tool-failure.sh +24 -0
- core/hooks/capture-work-log.sh +89 -0
- core/hooks/check-agents-md-refs.sh +75 -0
- core/hooks/check-agents-md-size.sh +49 -0
- core/hooks/check-capture-worked.sh +148 -0
- core/hooks/check-doc-size.sh +61 -0
- core/hooks/check-mcp-extras.sh +92 -0
- core/hooks/check-state.sh +87 -0
- core/hooks/classify-task-mode.sh +103 -0
- core/hooks/cos-env.sh +1301 -0
- core/hooks/drain-embedding-outbox.sh +24 -0
- core/hooks/enforce-anti-ambiguity.sh +74 -0
- core/hooks/enforce-commit-message.sh +73 -0
- core/hooks/enforce-doc-anchor.sh +224 -0
- core/hooks/enforce-doc-sync.sh +206 -0
- core/hooks/enforce-graph-context.sh +89 -0
- core/hooks/enforce-graph-first-read.sh +94 -0
- core/hooks/enforce-memory-check.sh +128 -0
- core/hooks/enforce-rename-plan.sh +78 -0
- core/hooks/enforce-scaffold-boundary.sh +68 -0
- core/hooks/enforce-skill.sh +125 -0
- core/hooks/enforce-task-body.sh +52 -0
- core/hooks/enforce-task-start.sh +81 -0
- core/hooks/enforce-task-transition.sh +75 -0
- core/hooks/enforce-template.sh +143 -0
- core/hooks/enforce-verify.sh +112 -0
- core/hooks/enforce-wip-limit.sh +43 -0
- core/hooks/enforce-zoom.sh +69 -0
- core/hooks/ensure-hub-up.sh +67 -0
- core/hooks/inject-mcp-caller-session.sh +70 -0
- core/hooks/jit-recall.sh +65 -0
- core/hooks/link-commit-to-task.sh +143 -0
- core/hooks/lint-task.sh +40 -0
- core/hooks/nudge-docs-first.sh +71 -0
- core/hooks/nudge-git-mode.sh +29 -0
- core/hooks/nudge-graph-os.sh +118 -0
- core/hooks/nudge-learn-narrative.sh +36 -0
- core/hooks/nudge-model-routing.sh +32 -0
- core/hooks/nudge-reentry.sh +101 -0
- core/hooks/nudge-reuse-first.sh +68 -0
- core/hooks/nudge-task-discovery.sh +81 -0
- core/hooks/nudge-thinking-os.sh +109 -0
- core/hooks/pr-reap.sh +23 -0
- core/hooks/reclaim-sweep.sh +58 -0
- core/hooks/record-verify-auto.sh +77 -0
- core/hooks/record-verify.sh +74 -0
- core/hooks/regen-reminder.sh +104 -0
- core/hooks/registry.yaml +1262 -0
- core/hooks/remind-daily.sh +27 -0
- core/hooks/remind-dogfood.sh +70 -0
- core/hooks/remind-learn-validate.sh +94 -0
- core/hooks/rules-primer.sh +50 -0
- core/hooks/search-enforce-inventory.sh +108 -0
- core/hooks/search-verify-remaining.sh +132 -0
- core/hooks/session-context.sh +729 -0
- core/hooks/session-end.sh +145 -0
- core/hooks/session-skill-primer.sh +43 -0
- core/hooks/snapshot-transcript.sh +56 -0
- core/hooks/sync-task-current.sh +85 -0
- core/hooks/test-first-reminder.sh +120 -0
- core/hooks/test-governor.sh +173 -0
- core/hooks/thinking_os-gate.sh +52 -0
- core/hooks/track-backtrack.sh +35 -0
- core/hooks/track-discovery.sh +121 -0
- core/hooks/track-skill.sh +53 -0
- core/hooks/validate-task-frontmatter.sh +49 -0
- core/hooks/verify-rename-callers.sh +119 -0
- core/hooks/warn-abandoned-task.sh +99 -0
- core/hooks/warn-destructive-edit.sh +64 -0
- core/hooks/warn-diff-size.sh +43 -0
- core/hooks/warn-graph-empty.sh +81 -0
- core/hooks/warn-mcp-down.sh +190 -0
- core/hooks/write-state.sh +55 -0
- core/logging_os/__init__.py +33 -0
- core/logging_os/api.py +127 -0
- core/logging_os/bridge.py +80 -0
- core/logging_os/config.py +172 -0
- core/logging_os/fingerprint.py +25 -0
- core/logging_os/redact.py +53 -0
- core/logging_os/render.py +83 -0
- core/logging_os/sinks.py +164 -0
- core/rules/anti-overengineering.md +44 -0
- core/rules/api-contract-discipline.md +41 -0
- core/rules/dimension-registry.md +155 -0
- core/rules/git-workflow.md +57 -0
- core/rules/memory.md +46 -0
- core/rules/model-routing.md +22 -0
- core/rules/skill-enforcement.md +75 -0
- core/rules/test-discipline.md +38 -0
- core/rules/thinking_os.md +48 -0
- core/rules/transparency-banner.md +37 -0
- core/runtime_paths.yaml +36 -0
- core/scaffold_manifest.json +14430 -0
- core/scheduled/__init__.py +0 -0
- core/scheduled/_activity.py +126 -0
- core/scheduled/_state.py +113 -0
- core/scheduled/config.py +86 -0
- core/scheduled/dep_reconcile.py +135 -0
- core/scheduled/error_sweep.py +137 -0
- core/scheduled/nightly.py +930 -0
- core/scheduled/responsive_extract.py +65 -0
- core/schemas/adapter.schema.json +269 -0
- core/schemas/preset.schema.json +50 -0
- core/schemas/skill.schema.json +81 -0
- core/schemas/stack.schema.json +404 -0
- core/scripts/_lib.sh +9 -0
- core/scripts/docs-lint.sh +228 -0
- core/scripts/docs-nav-fix.sh +133 -0
- core/scripts/docs-staleness-check.sh +154 -0
- core/scripts/install-adapter.sh +266 -0
- core/scripts/link-stack-skills.sh +52 -0
- core/scripts/log-latest.sh +106 -0
- core/scripts/log-search.sh +89 -0
- core/scripts/log-write.sh +134 -0
- core/scripts/ref-resolve.sh +71 -0
- core/skills/a11y/SKILL.md +305 -0
- core/skills/a11y/assets/a11y-checklist.md +137 -0
- core/skills/a11y/references/aria-and-focus.md +247 -0
- core/skills/a11y/references/rn-accessibility.md +343 -0
- core/skills/a11y/references/screen-reader-testing.md +190 -0
- core/skills/agent-memory/SKILL.md +191 -0
- core/skills/agent-memory/assets/memory-checklist.md +21 -0
- core/skills/agent-memory/references/memory-recipes.md +57 -0
- core/skills/api-design/SKILL.md +232 -0
- core/skills/api-design/assets/api-design-checklist.md +110 -0
- core/skills/api-design/references/error-envelope.md +381 -0
- core/skills/api-design/references/idempotency-pagination.md +312 -0
- core/skills/api-design/references/rest-contracts.md +426 -0
- core/skills/auth-patterns/SKILL.md +352 -0
- core/skills/auth-patterns/assets/auth-checklist.md +118 -0
- core/skills/auth-patterns/references/jwt-and-service-tokens.md +343 -0
- core/skills/auth-patterns/references/passkeys-2fa.md +289 -0
- core/skills/auth-patterns/references/sessions-vs-jwt.md +230 -0
- core/skills/auth-patterns/scripts/cookie-flag-check.py +146 -0
- core/skills/backend-fundamentals/SKILL.md +238 -0
- core/skills/backend-fundamentals/assets/backend-checklist.md +27 -0
- core/skills/backend-fundamentals/references/backend-patterns.md +56 -0
- core/skills/backend-fundamentals/scripts/check_layering.py +83 -0
- core/skills/clean-code/SKILL.md +642 -0
- core/skills/clean-code/scripts/audit-fail-closed.py +167 -0
- core/skills/codebase-explorer/SKILL.md +89 -0
- core/skills/codebase-explorer/assets/reading-checklist.md +24 -0
- core/skills/codebase-explorer/references/reading-strategies.md +52 -0
- core/skills/codebase-explorer/scripts/outline.py +99 -0
- core/skills/db-design/SKILL.md +327 -0
- core/skills/db-design/assets/migration-template.sql +49 -0
- core/skills/db-design/references/migration-discipline.md +290 -0
- core/skills/db-design/references/postgres-patterns.md +340 -0
- core/skills/db-design/scripts/migration-safety.sh +150 -0
- core/skills/deployment-cicd/SKILL.md +260 -0
- core/skills/deployment-cicd/assets/deploy-checklist.md +26 -0
- core/skills/deployment-cicd/references/pipeline-and-release.md +54 -0
- core/skills/deployment-cicd/scripts/lint_workflow.py +79 -0
- core/skills/docker/SKILL.md +114 -0
- core/skills/docker/assets/dockerfile-checklist.md +31 -0
- core/skills/docker/references/compose-patterns.md +66 -0
- core/skills/docker/references/dockerfile-optimization.md +64 -0
- core/skills/docker/scripts/lint_dockerfile.sh +48 -0
- core/skills/docker/versions.json +16 -0
- core/skills/end-to-end-testing/SKILL.md +101 -0
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- templates/rust-axum/skills/rust/SKILL.md +73 -0
- templates/rust-axum/skills/rust/references/anatomy.md +63 -0
- templates/rust-axum/stack.yaml +65 -0
- templates/rust-plain/scaffold/src/backend/Cargo.toml +6 -0
- templates/rust-plain/scaffold/src/backend/src/main.rs +3 -0
- templates/rust-plain/scaffold-boundary.yaml +23 -0
- templates/rust-plain/stack.yaml +51 -0
- templates/spring-boot/rules/backend.md +20 -0
- templates/spring-boot/scaffold/docs/engineering/spring-boot-rules.md +35 -0
- templates/spring-boot/scaffold/docs/playbooks/spring-boot-service.md +45 -0
- templates/spring-boot/scaffold/src/backend/mvnw +302 -0
- templates/spring-boot/scaffold/src/backend/pom.xml +69 -0
- templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/Application.java +16 -0
- templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/common/GlobalExceptionHandler.java +31 -0
- templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthController.java +22 -0
- templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthService.java +12 -0
- templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthStatus.java +4 -0
- templates/spring-boot/scaffold/src/backend/src/test/java/com/example/app/health/HealthServiceTest.java +15 -0
- templates/spring-boot/scaffold-boundary.yaml +26 -0
- templates/spring-boot/skills/spring-boot/SKILL.md +84 -0
- templates/spring-boot/skills/spring-boot/references/anatomy.md +63 -0
- templates/spring-boot/stack.yaml +65 -0
- templates/svelte-sveltekit/rules/frontend.md +20 -0
- templates/svelte-sveltekit/scaffold/docs/engineering/svelte-sveltekit-rules.md +37 -0
- templates/svelte-sveltekit/scaffold/docs/playbooks/svelte-sveltekit-app.md +36 -0
- templates/svelte-sveltekit/scaffold/src/frontend/package.json +22 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/app.html +12 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/hooks.server.ts +14 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/lib/components/Greeting.svelte +6 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/lib/stores/count.test.ts +26 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/lib/stores/count.ts +4 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+layout.svelte +24 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+page.svelte +9 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+page.ts +7 -0
- templates/svelte-sveltekit/scaffold/src/frontend/src/routes/health/+server.ts +7 -0
- templates/svelte-sveltekit/scaffold/src/frontend/svelte.config.js +10 -0
- templates/svelte-sveltekit/scaffold/src/frontend/tsconfig.json +7 -0
- templates/svelte-sveltekit/scaffold/src/frontend/vite.config.ts +7 -0
- templates/svelte-sveltekit/scaffold/src/frontend/vitest.config.ts +11 -0
- templates/svelte-sveltekit/scaffold-boundary.yaml +29 -0
- templates/svelte-sveltekit/skills/svelte/SKILL.md +90 -0
- templates/svelte-sveltekit/skills/svelte/references/anatomy.md +62 -0
- templates/svelte-sveltekit/stack.yaml +70 -0
- templates/typescript-plain/scaffold/src/index.ts +3 -0
- templates/typescript-plain/scaffold/tsconfig.json +13 -0
- templates/typescript-plain/scaffold-boundary.yaml +22 -0
- templates/typescript-plain/stack.yaml +44 -0
- templates/vue-nuxt/rules/frontend.md +19 -0
- templates/vue-nuxt/scaffold/docs/engineering/nuxt-rules.md +30 -0
- templates/vue-nuxt/scaffold/docs/playbooks/nuxt-app.md +29 -0
- templates/vue-nuxt/scaffold/src/frontend/app.vue +3 -0
- templates/vue-nuxt/scaffold/src/frontend/nuxt.config.ts +11 -0
- templates/vue-nuxt/scaffold/src/frontend/package.json +20 -0
- templates/vue-nuxt/scaffold/src/frontend/pages/index.test.ts +19 -0
- templates/vue-nuxt/scaffold/src/frontend/pages/index.vue +11 -0
- templates/vue-nuxt/scaffold/src/frontend/vitest.config.ts +12 -0
- templates/vue-nuxt/scaffold-boundary.yaml +26 -0
- templates/vue-nuxt/skills/vue-nuxt/SKILL.md +57 -0
- templates/vue-nuxt/skills/vue-nuxt/references/anatomy.md +60 -0
- templates/vue-nuxt/stack.yaml +61 -0
- templates/wordpress/rules/backend.md +19 -0
- templates/wordpress/scaffold/docs/engineering/wordpress-rules.md +28 -0
- templates/wordpress/scaffold/docs/playbooks/wordpress-service.md +29 -0
- templates/wordpress/scaffold/src/backend/composer.json +17 -0
- templates/wordpress/scaffold/src/backend/phpcs.xml.dist +11 -0
- templates/wordpress/scaffold/src/backend/phpunit.xml +10 -0
- templates/wordpress/scaffold/src/backend/plugin/inc/health.php +8 -0
- templates/wordpress/scaffold/src/backend/plugin/plugin.php +28 -0
- templates/wordpress/scaffold/src/backend/tests/HealthStatusTest.php +15 -0
- templates/wordpress/scaffold/src/backend/theme/functions.php +18 -0
- templates/wordpress/scaffold/src/backend/theme/style.css +11 -0
- templates/wordpress/scaffold-boundary.yaml +23 -0
- templates/wordpress/skills/wordpress/SKILL.md +110 -0
- templates/wordpress/skills/wordpress/assets/wp-checklist.md +28 -0
- templates/wordpress/skills/wordpress/references/wp-development.md +75 -0
- templates/wordpress/skills/wordpress/references/wp-security.md +68 -0
- templates/wordpress/skills/wordpress/scripts/scan_wp_smells.py +91 -0
- templates/wordpress/skills/wordpress/versions.json +16 -0
- templates/wordpress/stack.yaml +60 -0
- thinking_os/__init__.py +1 -0
- thinking_os/_agent_markers.py +32 -0
- thinking_os/background.py +405 -0
- thinking_os/bootstrap_outcomes.py +200 -0
- thinking_os/budget.py +302 -0
- thinking_os/capture.py +495 -0
- thinking_os/cognition.py +516 -0
- thinking_os/cognition_schemas.py +517 -0
- thinking_os/compress.py +192 -0
- thinking_os/concepts.py +233 -0
- thinking_os/dashboard.py +159 -0
- thinking_os/database.py +2883 -0
- thinking_os/decay.py +393 -0
- thinking_os/digest.py +295 -0
- thinking_os/dispatcher.py +192 -0
- thinking_os/dispatcher_helpers.py +48 -0
- thinking_os/dispatchers/__init__.py +3 -0
- thinking_os/dispatchers/default.py +47 -0
- thinking_os/distill.py +192 -0
- thinking_os/doc_indexer.py +905 -0
- thinking_os/embeddings.py +943 -0
- thinking_os/formula_composer.py +556 -0
- thinking_os/gate_marker.py +75 -0
- thinking_os/graph.py +296 -0
- thinking_os/graph_indexer.py +360 -0
- thinking_os/health_check.py +517 -0
- thinking_os/impact.py +119 -0
- thinking_os/memory_gc.py +356 -0
- thinking_os/migrator_embeddings.py +318 -0
- thinking_os/precision.py +194 -0
- thinking_os/record_outcome.py +399 -0
- thinking_os/repair.py +105 -0
- thinking_os/retrieval_quality.py +239 -0
- thinking_os/roles_state.py +168 -0
- thinking_os/sanitizer.py +320 -0
- thinking_os/server.py +3160 -0
- thinking_os/session_enrich.py +272 -0
- thinking_os/session_observe_worker.py +111 -0
- thinking_os/session_startup.py +74 -0
- thinking_os/session_summary.py +245 -0
- thinking_os/task_analyzer.py +462 -0
- thinking_os/task_parser.py +342 -0
- thinking_os/task_sync.py +73 -0
- thinking_os/tools/__init__.py +6 -0
- thinking_os/tools/_shared.py +947 -0
- thinking_os/tools/cognition.py +1867 -0
- thinking_os/tools/docs.py +770 -0
- thinking_os/tools/learning.py +2078 -0
- thinking_os/tools/logs.py +79 -0
- thinking_os/tools/memory.py +840 -0
- thinking_os/tools/metrics.py +200 -0
- thinking_os/tools/retrieve.py +415 -0
- thinking_os/tools/routing.py +658 -0
- thinking_os/tools/tasks.py +449 -0
- thinking_os/tools/trajectory.py +181 -0
- thinking_os/tracing.py +235 -0
- web/__init__.py +5 -0
- web/_cache.py +118 -0
- web/_deps.py +56 -0
- web/_envelope.py +85 -0
- web/_project_context.py +140 -0
- web/chat_providers.py +108 -0
- web/init_jobs.py +216 -0
- web/routes/__init__.py +25 -0
- web/routes/_bounded_read.py +76 -0
- web/routes/board.py +1089 -0
- web/routes/cognition.py +1838 -0
- web/routes/config.py +635 -0
- web/routes/graph.py +513 -0
- web/routes/health.py +180 -0
- web/routes/hooks.py +288 -0
- web/routes/hub.py +1219 -0
- web/routes/logs.py +374 -0
- web/routes/metrics.py +43 -0
- web/routes/observability.py +400 -0
- web/routes/patterns.py +227 -0
- web/routes/presence.py +609 -0
- web/routes/roles.py +446 -0
- web/routes/scheduled.py +261 -0
- web/routes/search.py +238 -0
- web/routes/sessions.py +220 -0
- web/routes/settings.py +363 -0
- web/routes/stream.py +547 -0
- web/security.py +157 -0
- web/server.py +283 -0
thinking_os/memory_gc.py
ADDED
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@@ -0,0 +1,356 @@
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#!/usr/bin/env python3
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"""Thinking OS — garbage collection for dangling memory rows."""
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from __future__ import annotations
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import argparse
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import gzip
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import json
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import logging
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import sqlite3
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import sys
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from datetime import datetime, timezone
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from pathlib import Path
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from typing import Any
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sys.path.insert(0, str(Path(__file__).resolve().parent))
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from database import DEFAULT_DB_PATH, get_connection
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from core.logging_os import setup as _logging_os_setup
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_logging_os_setup(level="info")
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logger = logging.getLogger("thinking_os.gc")
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# Path globs that should never own persistent memory. When a Write/Edit
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# hits one of these, the observation still gets captured (intent is
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# correct) but follow-up purges leave orphans behind. We match path
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# prefixes so `/tmp` and the macOS `/private/tmp` alias collapse to one
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# rule.
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TRASH_PATH_PREFIXES = ("/tmp/", "/private/tmp/", "/var/folders/")
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def _table_exists(conn: sqlite3.Connection, name: str) -> bool:
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row = conn.execute(
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"SELECT 1 FROM sqlite_master WHERE type='table' AND name = ?",
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(name,),
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).fetchone()
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return bool(row)
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def _column_exists(conn: sqlite3.Connection, table: str, column: str) -> bool:
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return any(r[1] == column for r in conn.execute(f"PRAGMA table_info({table})"))
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def gc_memory(
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db_path: str | Path | None = None,
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*,
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dry_run: bool = False,
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) -> dict[str, Any]:
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"""Remove dangling embeddings + concept_graph edges + trash observations.
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Returns stats; never raises on missing tables (pre-migration DBs
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silently report zero).
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"""
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path = Path(db_path or DEFAULT_DB_PATH)
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stats: dict[str, Any] = {
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"orphan_embeddings_observations": 0,
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"orphan_embeddings_document_chunks": 0,
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60
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"orphan_embeddings_learned_patterns": 0,
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61
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"orphan_pattern_validations": 0,
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"orphan_graph_evidence": 0,
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"orphan_concept_graph_edges": 0,
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64
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"stale_co_edit_edges": 0,
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65
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"trash_observations": 0,
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66
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"status": "ok",
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67
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"dry_run": dry_run,
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68
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}
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69
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+
if not path.exists():
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70
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stats["status"] = "no_db"
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return stats
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72
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+
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73
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conn = get_connection(path)
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74
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try:
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# ---- 1. Orphan embeddings that reference deleted rows ----
|
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76
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if _table_exists(conn, "embeddings"):
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77
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for source in ("observations", "document_chunks", "learned_patterns"):
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78
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if not _table_exists(conn, source):
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79
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continue
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80
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cur = conn.execute(
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81
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f"SELECT COUNT(*) FROM embeddings e "
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82
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f"WHERE e.source_table = ? "
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83
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f" AND NOT EXISTS (SELECT 1 FROM {source} t WHERE t.id = e.source_id)",
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84
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(source,),
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85
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)
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86
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n = cur.fetchone()[0]
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87
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stats[f"orphan_embeddings_{source}"] = int(n)
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88
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if n and not dry_run:
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conn.execute(
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90
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f"DELETE FROM embeddings "
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91
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f"WHERE source_table = ? "
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f" AND NOT EXISTS (SELECT 1 FROM {source} t WHERE t.id = source_id)",
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93
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(source,),
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94
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)
|
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95
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+
|
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96
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# ---- 1b. Orphan pattern_validations (pattern_id deleted) ----
|
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97
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if _table_exists(conn, "pattern_validations") and _table_exists(conn, "learned_patterns"):
|
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98
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n = conn.execute(
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"SELECT COUNT(*) FROM pattern_validations v "
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"WHERE NOT EXISTS (SELECT 1 FROM learned_patterns p WHERE p.id = v.pattern_id)"
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).fetchone()[0]
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stats["orphan_pattern_validations"] = int(n)
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if n and not dry_run:
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conn.execute(
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105
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"DELETE FROM pattern_validations WHERE NOT EXISTS "
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106
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"(SELECT 1 FROM learned_patterns p WHERE p.id = pattern_validations.pattern_id)"
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)
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109
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# ---- 1c. Orphan graph_evidence_v12 (the ON DELETE CASCADE that didn't fire) ----
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110
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if _table_exists(conn, "graph_evidence_v12") and _table_exists(conn, "graph_edges_v12"):
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n = conn.execute(
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"SELECT COUNT(*) FROM graph_evidence_v12 e "
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"WHERE NOT EXISTS (SELECT 1 FROM graph_edges_v12 g WHERE g.id = e.edge_id)"
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).fetchone()[0]
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stats["orphan_graph_evidence"] = int(n)
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116
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if n and not dry_run:
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conn.execute(
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118
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"DELETE FROM graph_evidence_v12 WHERE NOT EXISTS "
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"(SELECT 1 FROM graph_edges_v12 g WHERE g.id = graph_evidence_v12.edge_id)"
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120
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)
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121
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|
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122
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# ---- 2. Concept graph edges whose endpoints are trash paths ----
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123
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if _table_exists(conn, "concept_graph"):
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124
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globs = ["source LIKE ?", "target LIKE ?"]
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125
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params: list[Any] = []
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126
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for prefix in TRASH_PATH_PREFIXES:
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127
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params.extend([f"{prefix}%", f"{prefix}%"])
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128
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where = " OR ".join(globs * len(TRASH_PATH_PREFIXES))
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cur = conn.execute(
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f"SELECT COUNT(*) FROM concept_graph WHERE {where}",
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params,
|
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132
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)
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133
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n = cur.fetchone()[0]
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stats["orphan_concept_graph_edges"] = int(n)
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135
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if n and not dry_run:
|
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conn.execute(
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137
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f"DELETE FROM concept_graph WHERE {where}",
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138
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params,
|
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139
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)
|
|
140
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|
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141
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# ---- 2b. Stale, unreinforced co_edit edges (density backstop) ----
|
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142
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# A co_edit edge seen once (weight <= 1.0) and untouched for 30 days is
|
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143
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# noise; without this prune the graph trends back toward a useless
|
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144
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# complete graph (the 260 MB incident). Reinforced (weight > 1.0) or
|
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145
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# recent edges survive. Contract: docs/engineering/concept-graph.md.
|
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146
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if _table_exists(conn, "concept_graph"):
|
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147
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stale_where = (
|
|
148
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"edge_type = 'co_edit' AND weight <= 1.0 "
|
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149
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"AND updated_at < datetime('now', '-30 days')"
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150
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)
|
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151
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n = conn.execute(f"SELECT COUNT(*) FROM concept_graph WHERE {stale_where}").fetchone()[
|
|
152
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+
0
|
|
153
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]
|
|
154
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stats["stale_co_edit_edges"] = int(n)
|
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155
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if n and not dry_run:
|
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156
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conn.execute(f"DELETE FROM concept_graph WHERE {stale_where}")
|
|
157
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+
|
|
158
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# ---- 3. Trash observations (captured during local experiments) ----
|
|
159
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+
if _table_exists(conn, "observations") and _column_exists(
|
|
160
|
+
conn, "observations", "files_modified"
|
|
161
|
+
):
|
|
162
|
+
like_terms = " OR ".join("files_modified LIKE ?" for _ in TRASH_PATH_PREFIXES)
|
|
163
|
+
like_params = [f"{p}%" for p in TRASH_PATH_PREFIXES]
|
|
164
|
+
cur = conn.execute(
|
|
165
|
+
f"SELECT COUNT(*) FROM observations WHERE {like_terms}",
|
|
166
|
+
like_params,
|
|
167
|
+
)
|
|
168
|
+
n = cur.fetchone()[0]
|
|
169
|
+
stats["trash_observations"] = int(n)
|
|
170
|
+
if n and not dry_run:
|
|
171
|
+
# observations FTS + concept_graph triggers fire on DELETE.
|
|
172
|
+
conn.execute(
|
|
173
|
+
f"DELETE FROM observations WHERE {like_terms}",
|
|
174
|
+
like_params,
|
|
175
|
+
)
|
|
176
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+
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+
if not dry_run:
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+
conn.commit()
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+
|
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+
return stats
|
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+
finally:
|
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182
|
+
conn.close()
|
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183
|
+
|
|
184
|
+
|
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185
|
+
# Legacy mechanical changelog rows (write/edit) that pre-date the expires_at TTL
|
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186
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+
# wiring carry NULL expiry, so decay's forward GC (expires_at IS NOT NULL) never
|
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187
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+
# reaches them. This predicate is disjoint from that GC and excludes the
|
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|
+
# tool_failure/completion_gap rows the learning loop mines for lessons.
|
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|
+
_CHANGELOG_SWEEP_PREDICATE = (
|
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190
|
+
"memory_type = 'changelog' AND expires_at IS NULL "
|
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191
|
+
"AND COALESCE(observation_type, '') NOT IN ('tool_failure', 'completion_gap')"
|
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192
|
+
)
|
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193
|
+
|
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194
|
+
|
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195
|
+
def sweep_changelog(
|
|
196
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+
db_path: str | Path | None = None,
|
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197
|
+
*,
|
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198
|
+
dry_run: bool = True,
|
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199
|
+
grace_days: int = 14,
|
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200
|
+
archive_dir: str | Path | None = None,
|
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201
|
+
) -> dict[str, Any]:
|
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202
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+
"""Retire legacy mechanical `changelog` observations (NULL expiry).
|
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203
|
+
|
|
204
|
+
Owner-invoked, dry-run by default: reports the matched count and writes
|
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205
|
+
nothing. With dry_run=False it archives the matched rows to a gzip JSONL
|
|
206
|
+
under archive_dir (archive-first, so undo_sweep can restore) then deletes
|
|
207
|
+
them. Rows newer than grace_days are protected.
|
|
208
|
+
"""
|
|
209
|
+
path = Path(db_path or DEFAULT_DB_PATH)
|
|
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|
+
stats: dict[str, Any] = {
|
|
211
|
+
"matched": 0,
|
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212
|
+
"archived": 0,
|
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213
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+
"deleted": 0,
|
|
214
|
+
"archive_path": None,
|
|
215
|
+
"grace_days": grace_days,
|
|
216
|
+
"dry_run": dry_run,
|
|
217
|
+
"status": "ok",
|
|
218
|
+
}
|
|
219
|
+
if not path.exists():
|
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|
+
stats["status"] = "no_db"
|
|
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|
+
return stats
|
|
222
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+
|
|
223
|
+
conn = get_connection(path)
|
|
224
|
+
conn.row_factory = sqlite3.Row
|
|
225
|
+
try:
|
|
226
|
+
if not (
|
|
227
|
+
_table_exists(conn, "observations")
|
|
228
|
+
and _column_exists(conn, "observations", "expires_at")
|
|
229
|
+
):
|
|
230
|
+
stats["status"] = "no_target"
|
|
231
|
+
return stats
|
|
232
|
+
where = _CHANGELOG_SWEEP_PREDICATE + " AND created_at < datetime('now', ?)"
|
|
233
|
+
grace = f"-{max(0, int(grace_days))} days"
|
|
234
|
+
rows = conn.execute(f"SELECT * FROM observations WHERE {where}", (grace,)).fetchall()
|
|
235
|
+
stats["matched"] = len(rows)
|
|
236
|
+
if dry_run or not rows:
|
|
237
|
+
return stats
|
|
238
|
+
|
|
239
|
+
adir = Path(archive_dir or (path.parent / "archives"))
|
|
240
|
+
adir.mkdir(parents=True, exist_ok=True)
|
|
241
|
+
stamp = datetime.now(timezone.utc).strftime("%Y%m%dT%H%M%SZ")
|
|
242
|
+
apath = adir / f"changelog-sweep-{stamp}.jsonl.gz"
|
|
243
|
+
cols = list(rows[0].keys())
|
|
244
|
+
with gzip.open(apath, "wt", encoding="utf-8") as fh:
|
|
245
|
+
for r in rows:
|
|
246
|
+
fh.write(json.dumps({k: r[k] for k in cols}, ensure_ascii=False) + "\n")
|
|
247
|
+
stats["archived"] = len(rows)
|
|
248
|
+
stats["archive_path"] = str(apath)
|
|
249
|
+
|
|
250
|
+
# observations FTS + concept_graph triggers fire on DELETE.
|
|
251
|
+
conn.executemany("DELETE FROM observations WHERE id = ?", [(r["id"],) for r in rows])
|
|
252
|
+
conn.commit()
|
|
253
|
+
stats["deleted"] = len(rows)
|
|
254
|
+
return stats
|
|
255
|
+
finally:
|
|
256
|
+
conn.close()
|
|
257
|
+
|
|
258
|
+
|
|
259
|
+
def undo_sweep(db_path: str | Path | None, archive_path: str | Path) -> dict[str, Any]:
|
|
260
|
+
"""Restore rows a prior sweep archived — re-insert from the gzip JSONL,
|
|
261
|
+
skipping any id that still exists (idempotent)."""
|
|
262
|
+
path = Path(db_path or DEFAULT_DB_PATH)
|
|
263
|
+
apath = Path(archive_path)
|
|
264
|
+
stats: dict[str, Any] = {
|
|
265
|
+
"restored": 0,
|
|
266
|
+
"skipped": 0,
|
|
267
|
+
"archive_path": str(apath),
|
|
268
|
+
"status": "ok",
|
|
269
|
+
}
|
|
270
|
+
if not path.exists():
|
|
271
|
+
stats["status"] = "no_db"
|
|
272
|
+
return stats
|
|
273
|
+
if not apath.exists():
|
|
274
|
+
stats["status"] = "no_archive"
|
|
275
|
+
return stats
|
|
276
|
+
|
|
277
|
+
conn = get_connection(path)
|
|
278
|
+
try:
|
|
279
|
+
with gzip.open(apath, "rt", encoding="utf-8") as fh:
|
|
280
|
+
records = [json.loads(line) for line in fh if line.strip()]
|
|
281
|
+
for rec in records:
|
|
282
|
+
if conn.execute("SELECT 1 FROM observations WHERE id = ?", (rec.get("id"),)).fetchone():
|
|
283
|
+
stats["skipped"] += 1
|
|
284
|
+
continue
|
|
285
|
+
cols = list(rec.keys())
|
|
286
|
+
placeholders = ", ".join("?" for _ in cols)
|
|
287
|
+
conn.execute(
|
|
288
|
+
f"INSERT INTO observations ({', '.join(cols)}) VALUES ({placeholders})",
|
|
289
|
+
[rec[c] for c in cols],
|
|
290
|
+
)
|
|
291
|
+
stats["restored"] += 1
|
|
292
|
+
conn.commit()
|
|
293
|
+
return stats
|
|
294
|
+
finally:
|
|
295
|
+
conn.close()
|
|
296
|
+
|
|
297
|
+
|
|
298
|
+
def vacuum_db(db_path: str | Path | None) -> dict[str, Any]:
|
|
299
|
+
"""Reclaim file bytes via VACUUM (exclusive lock — run at quiescence only)."""
|
|
300
|
+
path = Path(db_path or DEFAULT_DB_PATH)
|
|
301
|
+
stats: dict[str, Any] = {"status": "ok", "size_before": None, "size_after": None}
|
|
302
|
+
if not path.exists():
|
|
303
|
+
stats["status"] = "no_db"
|
|
304
|
+
return stats
|
|
305
|
+
stats["size_before"] = path.stat().st_size
|
|
306
|
+
conn = get_connection(path)
|
|
307
|
+
try:
|
|
308
|
+
conn.execute("VACUUM")
|
|
309
|
+
conn.commit()
|
|
310
|
+
finally:
|
|
311
|
+
conn.close()
|
|
312
|
+
stats["size_after"] = path.stat().st_size
|
|
313
|
+
return stats
|
|
314
|
+
|
|
315
|
+
|
|
316
|
+
def main() -> None:
|
|
317
|
+
parser = argparse.ArgumentParser(description="Thinking OS memory GC")
|
|
318
|
+
parser.add_argument("--project-root", default=".")
|
|
319
|
+
parser.add_argument("--db", default=None)
|
|
320
|
+
parser.add_argument("--dry-run", action="store_true")
|
|
321
|
+
parser.add_argument(
|
|
322
|
+
"--sweep-changelog",
|
|
323
|
+
action="store_true",
|
|
324
|
+
help="Retire legacy changelog rows (NULL expiry) instead of running GC",
|
|
325
|
+
)
|
|
326
|
+
parser.add_argument(
|
|
327
|
+
"--confirm",
|
|
328
|
+
action="store_true",
|
|
329
|
+
help="With --sweep-changelog: archive-first then delete (default is dry-run)",
|
|
330
|
+
)
|
|
331
|
+
parser.add_argument(
|
|
332
|
+
"--undo", default=None, metavar="ARCHIVE", help="Restore rows from a sweep archive"
|
|
333
|
+
)
|
|
334
|
+
parser.add_argument("--vacuum", action="store_true", help="VACUUM the DB to reclaim bytes")
|
|
335
|
+
parser.add_argument(
|
|
336
|
+
"--grace-days",
|
|
337
|
+
type=int,
|
|
338
|
+
default=14,
|
|
339
|
+
help="With --sweep-changelog: protect rows newer than N days (default 14)",
|
|
340
|
+
)
|
|
341
|
+
args = parser.parse_args()
|
|
342
|
+
|
|
343
|
+
db = args.db or str(Path(args.project_root) / ".coding-os" / "coding-os.db")
|
|
344
|
+
if args.undo:
|
|
345
|
+
stats = undo_sweep(db, args.undo)
|
|
346
|
+
elif args.vacuum:
|
|
347
|
+
stats = vacuum_db(db)
|
|
348
|
+
elif args.sweep_changelog:
|
|
349
|
+
stats = sweep_changelog(db, dry_run=not args.confirm, grace_days=args.grace_days)
|
|
350
|
+
else:
|
|
351
|
+
stats = gc_memory(db, dry_run=args.dry_run)
|
|
352
|
+
print(json.dumps(stats, indent=2))
|
|
353
|
+
|
|
354
|
+
|
|
355
|
+
if __name__ == "__main__":
|
|
356
|
+
main()
|
|
@@ -0,0 +1,318 @@
|
|
|
1
|
+
"""thinking_os — background embedding migrator.
|
|
2
|
+
|
|
3
|
+
DEPENDS: embeddings.py (encoder + dim helpers), db.py migration v12
|
|
4
|
+
(`embedding_dim` column).
|
|
5
|
+
"""
|
|
6
|
+
|
|
7
|
+
from __future__ import annotations
|
|
8
|
+
|
|
9
|
+
import json
|
|
10
|
+
import logging
|
|
11
|
+
import os
|
|
12
|
+
import sqlite3
|
|
13
|
+
import time
|
|
14
|
+
from dataclasses import asdict, dataclass, field
|
|
15
|
+
from pathlib import Path
|
|
16
|
+
from typing import Any
|
|
17
|
+
|
|
18
|
+
import embeddings
|
|
19
|
+
|
|
20
|
+
logger = logging.getLogger("coding_os.migrator_embeddings")
|
|
21
|
+
|
|
22
|
+
DEFAULT_BATCH_SIZE = 256
|
|
23
|
+
DEFAULT_TARGET_MODEL = "BAAI/bge-m3"
|
|
24
|
+
DEFAULT_CHECKPOINT = ".coding-os/.embedding-migration.json"
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
@dataclass
|
|
28
|
+
class MigrationCheckpoint:
|
|
29
|
+
"""On-disk progress marker — survives crash / SIGTERM."""
|
|
30
|
+
|
|
31
|
+
target_model: str = DEFAULT_TARGET_MODEL
|
|
32
|
+
total: int = 0
|
|
33
|
+
done: int = 0
|
|
34
|
+
last_id: int = 0
|
|
35
|
+
eta_seconds: float = 0.0
|
|
36
|
+
started_at: float = field(default_factory=time.time)
|
|
37
|
+
updated_at: float = field(default_factory=time.time)
|
|
38
|
+
|
|
39
|
+
@classmethod
|
|
40
|
+
def load(cls, path: str | Path) -> MigrationCheckpoint:
|
|
41
|
+
p = Path(path)
|
|
42
|
+
if not p.exists():
|
|
43
|
+
return cls()
|
|
44
|
+
try:
|
|
45
|
+
data = json.loads(p.read_text(encoding="utf-8"))
|
|
46
|
+
except (json.JSONDecodeError, OSError) as exc:
|
|
47
|
+
logger.warning("checkpoint load failed (%s); starting fresh", exc)
|
|
48
|
+
return cls()
|
|
49
|
+
return cls(
|
|
50
|
+
target_model=data.get("target_model", DEFAULT_TARGET_MODEL),
|
|
51
|
+
total=int(data.get("total", 0)),
|
|
52
|
+
done=int(data.get("done", 0)),
|
|
53
|
+
last_id=int(data.get("last_id", 0)),
|
|
54
|
+
eta_seconds=float(data.get("eta_seconds", 0.0)),
|
|
55
|
+
started_at=float(data.get("started_at", time.time())),
|
|
56
|
+
updated_at=float(data.get("updated_at", time.time())),
|
|
57
|
+
)
|
|
58
|
+
|
|
59
|
+
def save(self, path: str | Path) -> None:
|
|
60
|
+
p = Path(path)
|
|
61
|
+
p.parent.mkdir(parents=True, exist_ok=True)
|
|
62
|
+
self.updated_at = time.time()
|
|
63
|
+
# Atomic replace — partial writes never corrupt the checkpoint.
|
|
64
|
+
tmp = p.with_suffix(p.suffix + ".tmp")
|
|
65
|
+
tmp.write_text(json.dumps(asdict(self), indent=2), encoding="utf-8")
|
|
66
|
+
tmp.replace(p)
|
|
67
|
+
|
|
68
|
+
|
|
69
|
+
# ---------------------------------------------------------------------------
|
|
70
|
+
# Work selection
|
|
71
|
+
# ---------------------------------------------------------------------------
|
|
72
|
+
|
|
73
|
+
|
|
74
|
+
def _pick_pending_rows(
|
|
75
|
+
conn: sqlite3.Connection,
|
|
76
|
+
*,
|
|
77
|
+
target_model: str,
|
|
78
|
+
last_id: int,
|
|
79
|
+
batch_size: int,
|
|
80
|
+
) -> list[sqlite3.Row]:
|
|
81
|
+
"""Return rows whose model is not yet the target, after last_id."""
|
|
82
|
+
conn.row_factory = sqlite3.Row
|
|
83
|
+
return conn.execute(
|
|
84
|
+
"""
|
|
85
|
+
SELECT id, source_table, source_id, text_hash, model_name
|
|
86
|
+
FROM embeddings
|
|
87
|
+
WHERE (model_name IS NULL OR model_name != ?) AND id > ?
|
|
88
|
+
ORDER BY id ASC
|
|
89
|
+
LIMIT ?
|
|
90
|
+
""",
|
|
91
|
+
(target_model, int(last_id), int(batch_size)),
|
|
92
|
+
).fetchall()
|
|
93
|
+
|
|
94
|
+
|
|
95
|
+
def _text_for_row(conn: sqlite3.Connection, row: sqlite3.Row) -> str | None:
|
|
96
|
+
"""Reconstruct the source text the old embedding was computed from."""
|
|
97
|
+
table = row["source_table"]
|
|
98
|
+
source_id = int(row["source_id"])
|
|
99
|
+
|
|
100
|
+
# Table-specific text columns mirror reindex_all in embeddings.py.
|
|
101
|
+
# Missing / malformed tables are tolerated — we simply skip the row.
|
|
102
|
+
queries: dict[str, tuple[str, tuple[str, ...]]] = {
|
|
103
|
+
"observations": (
|
|
104
|
+
"SELECT title, narrative, concepts FROM observations WHERE id = ?",
|
|
105
|
+
("title", "narrative", "concepts"),
|
|
106
|
+
),
|
|
107
|
+
"learned_patterns": (
|
|
108
|
+
"SELECT pattern, concepts FROM learned_patterns WHERE id = ?",
|
|
109
|
+
("pattern", "concepts"),
|
|
110
|
+
),
|
|
111
|
+
"outcome_history": (
|
|
112
|
+
"SELECT narrative_key_insight, narrative_what_failed, "
|
|
113
|
+
"narrative_what_worked FROM outcome_history WHERE id = ?",
|
|
114
|
+
(
|
|
115
|
+
"narrative_key_insight",
|
|
116
|
+
"narrative_what_failed",
|
|
117
|
+
"narrative_what_worked",
|
|
118
|
+
),
|
|
119
|
+
),
|
|
120
|
+
"document_chunks": (
|
|
121
|
+
"SELECT heading_path, content FROM document_chunks WHERE id = ?",
|
|
122
|
+
("heading_path", "content"),
|
|
123
|
+
),
|
|
124
|
+
"tasks": (
|
|
125
|
+
"SELECT title, goal_text, requirements FROM tasks WHERE id = ?",
|
|
126
|
+
("title", "goal_text", "requirements"),
|
|
127
|
+
),
|
|
128
|
+
# graph_nodes embeddings (Wave 1) — without this the migrator silently
|
|
129
|
+
# skips every code-symbol vector (returns None → never re-embedded),
|
|
130
|
+
# leaving the graph half-migrated. Mirrors embeddings.reindex_all.
|
|
131
|
+
"graph_nodes": (
|
|
132
|
+
"SELECT label, signature, doc_blob FROM graph_nodes WHERE id = ?",
|
|
133
|
+
("label", "signature", "doc_blob"),
|
|
134
|
+
),
|
|
135
|
+
}
|
|
136
|
+
handler = queries.get(table)
|
|
137
|
+
if handler is None:
|
|
138
|
+
return None
|
|
139
|
+
sql, fields = handler
|
|
140
|
+
try:
|
|
141
|
+
record = conn.execute(sql, (source_id,)).fetchone()
|
|
142
|
+
except sqlite3.OperationalError:
|
|
143
|
+
return None
|
|
144
|
+
if record is None:
|
|
145
|
+
return None
|
|
146
|
+
parts = [record[i] for i in range(len(fields))]
|
|
147
|
+
cleaned = " ".join(p for p in parts if p)
|
|
148
|
+
return cleaned or None
|
|
149
|
+
|
|
150
|
+
|
|
151
|
+
# ---------------------------------------------------------------------------
|
|
152
|
+
# Batch execution
|
|
153
|
+
# ---------------------------------------------------------------------------
|
|
154
|
+
|
|
155
|
+
|
|
156
|
+
def _total_pending(conn: sqlite3.Connection, target_model: str) -> int:
|
|
157
|
+
row = conn.execute(
|
|
158
|
+
"SELECT COUNT(*) FROM embeddings WHERE model_name IS NULL OR model_name != ?",
|
|
159
|
+
(target_model,),
|
|
160
|
+
).fetchone()
|
|
161
|
+
return int(row[0]) if row else 0
|
|
162
|
+
|
|
163
|
+
|
|
164
|
+
def run_one_batch(
|
|
165
|
+
conn: sqlite3.Connection,
|
|
166
|
+
*,
|
|
167
|
+
target_model: str = DEFAULT_TARGET_MODEL,
|
|
168
|
+
batch_size: int = DEFAULT_BATCH_SIZE,
|
|
169
|
+
checkpoint_path: str | Path = DEFAULT_CHECKPOINT,
|
|
170
|
+
) -> dict:
|
|
171
|
+
"""Process one batch; persist checkpoint; return status dict."""
|
|
172
|
+
checkpoint = MigrationCheckpoint.load(checkpoint_path)
|
|
173
|
+
if checkpoint.target_model != target_model:
|
|
174
|
+
checkpoint = MigrationCheckpoint(target_model=target_model)
|
|
175
|
+
|
|
176
|
+
total = _total_pending(conn, target_model) + checkpoint.done
|
|
177
|
+
checkpoint.total = total
|
|
178
|
+
if total == 0 or checkpoint.done >= total:
|
|
179
|
+
checkpoint.save(checkpoint_path)
|
|
180
|
+
return {
|
|
181
|
+
"done": checkpoint.done,
|
|
182
|
+
"total": total,
|
|
183
|
+
"migrated_this_batch": 0,
|
|
184
|
+
"remaining": max(total - checkpoint.done, 0),
|
|
185
|
+
"target_model": target_model,
|
|
186
|
+
"eta_seconds": 0.0,
|
|
187
|
+
"stopped_reason": "idle",
|
|
188
|
+
}
|
|
189
|
+
|
|
190
|
+
rows = _pick_pending_rows(
|
|
191
|
+
conn,
|
|
192
|
+
target_model=target_model,
|
|
193
|
+
last_id=checkpoint.last_id,
|
|
194
|
+
batch_size=batch_size,
|
|
195
|
+
)
|
|
196
|
+
if not rows:
|
|
197
|
+
# Nothing left above last_id — reset cursor and retry in case we
|
|
198
|
+
# wrapped after a partial earlier pass.
|
|
199
|
+
checkpoint.last_id = 0
|
|
200
|
+
rows = _pick_pending_rows(
|
|
201
|
+
conn,
|
|
202
|
+
target_model=target_model,
|
|
203
|
+
last_id=0,
|
|
204
|
+
batch_size=batch_size,
|
|
205
|
+
)
|
|
206
|
+
|
|
207
|
+
started = time.time()
|
|
208
|
+
migrated = 0
|
|
209
|
+
for row in rows:
|
|
210
|
+
text = _text_for_row(conn, row)
|
|
211
|
+
if text is None:
|
|
212
|
+
# Row references a gone/empty source row — mark it processed
|
|
213
|
+
# by nudging last_id forward so we don't retry it forever.
|
|
214
|
+
checkpoint.last_id = max(checkpoint.last_id, int(row["id"]))
|
|
215
|
+
continue
|
|
216
|
+
status = embeddings.upsert_embedding(
|
|
217
|
+
conn,
|
|
218
|
+
row["source_table"],
|
|
219
|
+
int(row["source_id"]),
|
|
220
|
+
text,
|
|
221
|
+
model_name=target_model,
|
|
222
|
+
)
|
|
223
|
+
if status.get("status") in ("inserted", "updated", "unchanged"):
|
|
224
|
+
migrated += 1
|
|
225
|
+
checkpoint.last_id = max(checkpoint.last_id, int(row["id"]))
|
|
226
|
+
|
|
227
|
+
elapsed = time.time() - started
|
|
228
|
+
checkpoint.done += migrated
|
|
229
|
+
remaining = max(total - checkpoint.done, 0)
|
|
230
|
+
if migrated and elapsed > 0:
|
|
231
|
+
# Simple EMA-ish smoothing: blend fresh estimate with previous.
|
|
232
|
+
fresh_eta = (elapsed / migrated) * remaining
|
|
233
|
+
checkpoint.eta_seconds = (
|
|
234
|
+
(checkpoint.eta_seconds * 0.5 + fresh_eta * 0.5)
|
|
235
|
+
if checkpoint.eta_seconds
|
|
236
|
+
else fresh_eta
|
|
237
|
+
)
|
|
238
|
+
checkpoint.save(checkpoint_path)
|
|
239
|
+
|
|
240
|
+
return {
|
|
241
|
+
"done": checkpoint.done,
|
|
242
|
+
"total": total,
|
|
243
|
+
"migrated_this_batch": migrated,
|
|
244
|
+
"remaining": remaining,
|
|
245
|
+
"target_model": target_model,
|
|
246
|
+
"eta_seconds": round(checkpoint.eta_seconds, 1),
|
|
247
|
+
"stopped_reason": "batch_done",
|
|
248
|
+
}
|
|
249
|
+
|
|
250
|
+
|
|
251
|
+
def migration_status(
|
|
252
|
+
conn: sqlite3.Connection,
|
|
253
|
+
*,
|
|
254
|
+
target_model: str = DEFAULT_TARGET_MODEL,
|
|
255
|
+
checkpoint_path: str | Path = DEFAULT_CHECKPOINT,
|
|
256
|
+
) -> dict:
|
|
257
|
+
"""Read-only: report current migration state."""
|
|
258
|
+
checkpoint = MigrationCheckpoint.load(checkpoint_path)
|
|
259
|
+
pending = _total_pending(conn, target_model)
|
|
260
|
+
done = checkpoint.done
|
|
261
|
+
total = max(done + pending, checkpoint.total)
|
|
262
|
+
complete = pending == 0
|
|
263
|
+
return {
|
|
264
|
+
"done": done,
|
|
265
|
+
"total": total,
|
|
266
|
+
"remaining": pending,
|
|
267
|
+
"target_model": target_model,
|
|
268
|
+
"migration_complete": complete,
|
|
269
|
+
"eta_seconds": round(checkpoint.eta_seconds, 1),
|
|
270
|
+
"started_at": checkpoint.started_at,
|
|
271
|
+
"updated_at": checkpoint.updated_at,
|
|
272
|
+
}
|
|
273
|
+
|
|
274
|
+
|
|
275
|
+
def run_until_idle(
|
|
276
|
+
conn: sqlite3.Connection,
|
|
277
|
+
*,
|
|
278
|
+
target_model: str = DEFAULT_TARGET_MODEL,
|
|
279
|
+
batch_size: int = DEFAULT_BATCH_SIZE,
|
|
280
|
+
checkpoint_path: str | Path = DEFAULT_CHECKPOINT,
|
|
281
|
+
max_batches: int | None = None,
|
|
282
|
+
) -> dict:
|
|
283
|
+
"""Synchronous driver — for tests and manual runs only."""
|
|
284
|
+
if not embeddings.is_available():
|
|
285
|
+
return {
|
|
286
|
+
"status": "skipped",
|
|
287
|
+
"reason": "unavailable",
|
|
288
|
+
"target_model": target_model,
|
|
289
|
+
}
|
|
290
|
+
|
|
291
|
+
iterations = 0
|
|
292
|
+
last: dict[str, Any] = {}
|
|
293
|
+
while True:
|
|
294
|
+
last = run_one_batch(
|
|
295
|
+
conn,
|
|
296
|
+
target_model=target_model,
|
|
297
|
+
batch_size=batch_size,
|
|
298
|
+
checkpoint_path=checkpoint_path,
|
|
299
|
+
)
|
|
300
|
+
iterations += 1
|
|
301
|
+
if last["migrated_this_batch"] == 0 or last["remaining"] == 0:
|
|
302
|
+
break
|
|
303
|
+
if max_batches is not None and iterations >= max_batches:
|
|
304
|
+
last["stopped_reason"] = "max_batches"
|
|
305
|
+
break
|
|
306
|
+
last["batches_executed"] = iterations
|
|
307
|
+
return last
|
|
308
|
+
|
|
309
|
+
|
|
310
|
+
__all__ = [
|
|
311
|
+
"DEFAULT_BATCH_SIZE",
|
|
312
|
+
"DEFAULT_CHECKPOINT",
|
|
313
|
+
"DEFAULT_TARGET_MODEL",
|
|
314
|
+
"MigrationCheckpoint",
|
|
315
|
+
"migration_status",
|
|
316
|
+
"run_one_batch",
|
|
317
|
+
"run_until_idle",
|
|
318
|
+
]
|