coding-os 0.3.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1304) hide show
  1. adapters/claude/README.md +6 -0
  2. adapters/claude/_install_helpers/extract_stacks.py +43 -0
  3. adapters/claude/_install_helpers/update_mcp_json.py +75 -0
  4. adapters/claude/adapter.yaml +164 -0
  5. adapters/claude/hooks/README.md +40 -0
  6. adapters/claude/hooks/agent_memory_sync.py +131 -0
  7. adapters/claude/hooks/ensure-agent-memory-link.sh +36 -0
  8. adapters/claude/hooks/sync-agent-memory.sh +21 -0
  9. adapters/claude/install.sh +86 -0
  10. adapters/claude/sdk_dispatcher.py +871 -0
  11. adapters/claude/settings.local.template.json +31 -0
  12. adapters/claude/settings.template.json +808 -0
  13. adapters/claude/update_mcp_json.py +85 -0
  14. adapters/codex/adapter.yaml +254 -0
  15. adapters/codex/chat_provider.py +230 -0
  16. adapters/codex/commands/formula-f1.md +129 -0
  17. adapters/codex/commands/formula-f10.md +100 -0
  18. adapters/codex/commands/formula-f11.md +123 -0
  19. adapters/codex/commands/formula-f2.md +139 -0
  20. adapters/codex/commands/formula-f3.md +127 -0
  21. adapters/codex/commands/formula-f4.md +101 -0
  22. adapters/codex/commands/formula-f5.md +135 -0
  23. adapters/codex/commands/formula-f6.md +147 -0
  24. adapters/codex/commands/formula-f7.md +111 -0
  25. adapters/codex/commands/formula-f8.md +133 -0
  26. adapters/codex/commands/formula-f9.md +112 -0
  27. adapters/codex/enable_codex_hooks.py +94 -0
  28. adapters/codex/ensure_codex_mcp.py +124 -0
  29. adapters/codex/hooks/codex-merge-hook-output.py +72 -0
  30. adapters/codex/hooks/codex-normalize-edit.py +96 -0
  31. adapters/codex/hooks/codex-postedit-dispatch.sh +75 -0
  32. adapters/codex/hooks/codex-posttool-dispatch.sh +70 -0
  33. adapters/codex/hooks/codex-preedit-dispatch.sh +83 -0
  34. adapters/codex/hooks/codex-pretool-dispatch.sh +82 -0
  35. adapters/codex/hooks/codex-sessionend-dispatch.sh +20 -0
  36. adapters/codex/hooks/codex-sessionstart-dispatch.sh +68 -0
  37. adapters/codex/hooks/codex-stop-dispatch.sh +73 -0
  38. adapters/codex/hooks/codex-userpromptsubmit-dispatch.sh +74 -0
  39. adapters/codex/hooks.template.json +208 -0
  40. adapters/codex/install.sh +83 -0
  41. adapters/codex/sdk_dispatcher.py +449 -0
  42. board_os/__init__.py +39 -0
  43. board_os/_agent_runtime.py +256 -0
  44. board_os/config.py +421 -0
  45. board_os/git_coherence.py +107 -0
  46. board_os/hub_adapter_manifest.py +140 -0
  47. board_os/mcp_tools.py +3228 -0
  48. board_os/migration.py +166 -0
  49. board_os/parser.py +317 -0
  50. board_os/presence.py +156 -0
  51. board_os/sync.py +320 -0
  52. board_os/transition_gates.py +224 -0
  53. board_os/transition_gates_cli.py +272 -0
  54. board_os/transition_gates_validator.py +551 -0
  55. board_os/verify_suites.py +126 -0
  56. board_os/verify_suites_cli.py +328 -0
  57. board_os/workflow.py +967 -0
  58. cli/__init__.py +0 -0
  59. cli/_data_types.py +248 -0
  60. cli/_init_helpers.py +587 -0
  61. cli/_resources.py +100 -0
  62. cli/adapter_registry.py +239 -0
  63. cli/add_stack.py +315 -0
  64. cli/aggregator.py +438 -0
  65. cli/board_commands.py +1218 -0
  66. cli/brain_commands.py +255 -0
  67. cli/cognition.py +345 -0
  68. cli/config_composer.py +349 -0
  69. cli/core_version.py +41 -0
  70. cli/cron_commands.py +278 -0
  71. cli/db_reset.py +298 -0
  72. cli/doc_commands.py +111 -0
  73. cli/doctor.py +2953 -0
  74. cli/doctor_board.py +365 -0
  75. cli/doctor_extras.py +1121 -0
  76. cli/doctor_graph.py +608 -0
  77. cli/doctor_tokens.py +254 -0
  78. cli/graph_commands.py +1265 -0
  79. cli/hook_renderer.py +393 -0
  80. cli/hub_commands.py +580 -0
  81. cli/list_adapters.py +79 -0
  82. cli/list_stacks.py +105 -0
  83. cli/logs_commands.py +89 -0
  84. cli/main.py +3070 -0
  85. cli/materialize_file.py +65 -0
  86. cli/mcp_start.py +153 -0
  87. cli/module_commands.py +513 -0
  88. cli/pr_commands.py +2024 -0
  89. cli/preset_commands.py +126 -0
  90. cli/preset_registry.py +171 -0
  91. cli/project_overrides.py +119 -0
  92. cli/registry.py +365 -0
  93. cli/remove_stack.py +492 -0
  94. cli/renderer.py +620 -0
  95. cli/setup.py +464 -0
  96. cli/skill_commands.py +689 -0
  97. cli/skill_registry.py +235 -0
  98. cli/skills_list.py +332 -0
  99. cli/stack_lint.py +351 -0
  100. cli/stack_registry.py +688 -0
  101. cli/subsystems.py +335 -0
  102. cli/sync_all.py +310 -0
  103. cli/tail_command.py +410 -0
  104. cli/update.py +608 -0
  105. cli/verify_since_edit.py +439 -0
  106. coding_os-0.3.2.dist-info/METADATA +508 -0
  107. coding_os-0.3.2.dist-info/RECORD +1304 -0
  108. coding_os-0.3.2.dist-info/WHEEL +5 -0
  109. coding_os-0.3.2.dist-info/entry_points.txt +5 -0
  110. coding_os-0.3.2.dist-info/licenses/LICENSE +201 -0
  111. coding_os-0.3.2.dist-info/top_level.txt +10 -0
  112. core/__init__.py +0 -0
  113. core/board_os/__init__.py +39 -0
  114. core/board_os/_agent_runtime.py +256 -0
  115. core/board_os/config.py +421 -0
  116. core/board_os/git_coherence.py +107 -0
  117. core/board_os/hub_adapter_manifest.py +140 -0
  118. core/board_os/mcp_tools.py +3228 -0
  119. core/board_os/migration.py +166 -0
  120. core/board_os/parser.py +317 -0
  121. core/board_os/presence.py +156 -0
  122. core/board_os/sync.py +320 -0
  123. core/board_os/transition-gates.yaml +176 -0
  124. core/board_os/transition_gates.py +224 -0
  125. core/board_os/transition_gates_cli.py +272 -0
  126. core/board_os/transition_gates_validator.py +551 -0
  127. core/board_os/verify-suites.yaml +113 -0
  128. core/board_os/verify_suites.py +126 -0
  129. core/board_os/verify_suites_cli.py +328 -0
  130. core/board_os/workflow.py +967 -0
  131. core/commands/board.md +27 -0
  132. core/commands/classify.md +23 -0
  133. core/commands/compose.md +23 -0
  134. core/commands/daily.md +31 -0
  135. core/commands/diagnose.md +7 -0
  136. core/commands/memory-search.md +23 -0
  137. core/commands/new-project.md +33 -0
  138. core/commands/retro.md +38 -0
  139. core/commands/review.md +14 -0
  140. core/commands/task.md +17 -0
  141. core/commands/verify.md +34 -0
  142. core/docs/thinking_os-final-edition.md +1449 -0
  143. core/doctor-config.yaml +74 -0
  144. core/graph_os/__init__.py +29 -0
  145. core/graph_os/backend.py +233 -0
  146. core/graph_os/backends/__init__.py +13 -0
  147. core/graph_os/backends/sqlite_backend.py +1053 -0
  148. core/graph_os/bench/__init__.py +17 -0
  149. core/graph_os/bench/fixtures.py +56 -0
  150. core/graph_os/bench/harness.py +95 -0
  151. core/graph_os/bench/persian_precision.py +142 -0
  152. core/graph_os/bench/scale_500k.py +120 -0
  153. core/graph_os/bench/token_cost.py +170 -0
  154. core/graph_os/bench/viewer_fps.py +110 -0
  155. core/graph_os/communities.py +410 -0
  156. core/graph_os/enterprise.py +218 -0
  157. core/graph_os/entry_points.py +226 -0
  158. core/graph_os/extractors/__init__.py +25 -0
  159. core/graph_os/extractors/code_generic.py +914 -0
  160. core/graph_os/extractors/code_go.py +1422 -0
  161. core/graph_os/extractors/code_json.py +340 -0
  162. core/graph_os/extractors/code_php.py +979 -0
  163. core/graph_os/extractors/code_python.py +1454 -0
  164. core/graph_os/extractors/code_shell.py +538 -0
  165. core/graph_os/extractors/code_toml.py +302 -0
  166. core/graph_os/extractors/code_ts.py +1665 -0
  167. core/graph_os/extractors/code_yaml.py +394 -0
  168. core/graph_os/extractors/contracts.py +1592 -0
  169. core/graph_os/extractors/md_links.py +890 -0
  170. core/graph_os/extractors/task_deps.py +345 -0
  171. core/graph_os/groups/__init__.py +22 -0
  172. core/graph_os/groups/cross_repo.py +156 -0
  173. core/graph_os/groups/manifest.py +141 -0
  174. core/graph_os/ingest/__init__.py +19 -0
  175. core/graph_os/ingest/base.py +306 -0
  176. core/graph_os/ingest/github.py +112 -0
  177. core/graph_os/ingest/zip.py +95 -0
  178. core/graph_os/toolchain.py +393 -0
  179. core/graph_os/tools/__init__.py +9 -0
  180. core/graph_os/tools/graph.py +5573 -0
  181. core/graph_os/tools/reindex_dispatch.py +730 -0
  182. core/graph_os/tree_sitter_overlay.py +235 -0
  183. core/graph_os/types.py +252 -0
  184. core/graph_os/vec_index.py +277 -0
  185. core/graph_os/viewer/__init__.py +12 -0
  186. core/graph_os/viewer/exporter.py +93 -0
  187. core/graph_os/viewer/template.py +189 -0
  188. core/hooks/_helpers/_paths.py +40 -0
  189. core/hooks/_helpers/advance_role.py +72 -0
  190. core/hooks/_helpers/auto_compose.py +228 -0
  191. core/hooks/_helpers/auto_validate_lessons.py +55 -0
  192. core/hooks/_helpers/branch_guard_check.py +796 -0
  193. core/hooks/_helpers/check_commit_message.py +108 -0
  194. core/hooks/_helpers/check_dangerous_rm.py +80 -0
  195. core/hooks/_helpers/check_git_bypass.py +154 -0
  196. core/hooks/_helpers/check_git_destructive.py +77 -0
  197. core/hooks/_helpers/check_settings_write.py +97 -0
  198. core/hooks/_helpers/consume_override.py +51 -0
  199. core/hooks/_helpers/context_budget.py +77 -0
  200. core/hooks/_helpers/cos_say_json.py +103 -0
  201. core/hooks/_helpers/destructive_edit_check.py +163 -0
  202. core/hooks/_helpers/detect_status_transition.py +82 -0
  203. core/hooks/_helpers/digest_regen.py +56 -0
  204. core/hooks/_helpers/doc_sync_check.py +498 -0
  205. core/hooks/_helpers/drain_embedding_outbox.py +52 -0
  206. core/hooks/_helpers/extract_additional_context.py +51 -0
  207. core/hooks/_helpers/extract_commit_msg_arg.py +74 -0
  208. core/hooks/_helpers/git_command_parse.py +424 -0
  209. core/hooks/_helpers/git_settings_fields.py +47 -0
  210. core/hooks/_helpers/graph_context_match.py +37 -0
  211. core/hooks/_helpers/graph_marker_check.py +70 -0
  212. core/hooks/_helpers/jit_recall.py +56 -0
  213. core/hooks/_helpers/json_field.py +41 -0
  214. core/hooks/_helpers/narrative_signal.py +59 -0
  215. core/hooks/_helpers/observation_count.py +31 -0
  216. core/hooks/_helpers/pre_commit_batch.py +177 -0
  217. core/hooks/_helpers/pre_commit_fake_input.py +42 -0
  218. core/hooks/_helpers/presence_gc.py +102 -0
  219. core/hooks/_helpers/presence_write.py +167 -0
  220. core/hooks/_helpers/recover_indirect.py +35 -0
  221. core/hooks/_helpers/routing_evolution.py +104 -0
  222. core/hooks/_helpers/session_recap.py +72 -0
  223. core/hooks/_helpers/skill_primer.py +229 -0
  224. core/hooks/_helpers/task_sync.py +59 -0
  225. core/hooks/_helpers/tool_failure_capture.py +147 -0
  226. core/hooks/_helpers/trajectory_autosnap.py +278 -0
  227. core/hooks/_helpers/trajectory_startup.py +62 -0
  228. core/hooks/_helpers/turn_summary.py +82 -0
  229. core/hooks/_helpers/validate_task_frontmatter.py +98 -0
  230. core/hooks/_helpers/wip_limit_check.py +103 -0
  231. core/hooks/_helpers/wip_lines.py +53 -0
  232. core/hooks/_helpers/work_log_append.py +89 -0
  233. core/hooks/_helpers/wrap_dispatch_output.py +82 -0
  234. core/hooks/advance-role.sh +48 -0
  235. core/hooks/agent-presence.sh +179 -0
  236. core/hooks/auto-brain-decay.sh +184 -0
  237. core/hooks/auto-compose-roles.sh +83 -0
  238. core/hooks/auto-graph-reconcile-shell.sh +119 -0
  239. core/hooks/auto-regen-doc-index.sh +120 -0
  240. core/hooks/auto-reindex-docs.sh +130 -0
  241. core/hooks/auto-task-sync.sh +56 -0
  242. core/hooks/auto-trace-rotate.sh +88 -0
  243. core/hooks/block-bad-patterns.sh +212 -0
  244. core/hooks/block-dangerous-commands.sh +182 -0
  245. core/hooks/block-hardcoded-literals.sh +90 -0
  246. core/hooks/block-migration-conflict.sh +114 -0
  247. core/hooks/block-protected-files.sh +129 -0
  248. core/hooks/block-secrets.sh +185 -0
  249. core/hooks/block-shared-tree-edit.sh +75 -0
  250. core/hooks/block-uv-heredoc.sh +78 -0
  251. core/hooks/branch-guard.sh +122 -0
  252. core/hooks/capture-observation.sh +76 -0
  253. core/hooks/capture-tool-failure.sh +24 -0
  254. core/hooks/capture-work-log.sh +89 -0
  255. core/hooks/check-agents-md-refs.sh +75 -0
  256. core/hooks/check-agents-md-size.sh +49 -0
  257. core/hooks/check-capture-worked.sh +148 -0
  258. core/hooks/check-doc-size.sh +61 -0
  259. core/hooks/check-mcp-extras.sh +92 -0
  260. core/hooks/check-state.sh +87 -0
  261. core/hooks/classify-task-mode.sh +103 -0
  262. core/hooks/cos-env.sh +1301 -0
  263. core/hooks/drain-embedding-outbox.sh +24 -0
  264. core/hooks/enforce-anti-ambiguity.sh +74 -0
  265. core/hooks/enforce-commit-message.sh +73 -0
  266. core/hooks/enforce-doc-anchor.sh +224 -0
  267. core/hooks/enforce-doc-sync.sh +206 -0
  268. core/hooks/enforce-graph-context.sh +89 -0
  269. core/hooks/enforce-graph-first-read.sh +94 -0
  270. core/hooks/enforce-memory-check.sh +128 -0
  271. core/hooks/enforce-rename-plan.sh +78 -0
  272. core/hooks/enforce-scaffold-boundary.sh +68 -0
  273. core/hooks/enforce-skill.sh +125 -0
  274. core/hooks/enforce-task-body.sh +52 -0
  275. core/hooks/enforce-task-start.sh +81 -0
  276. core/hooks/enforce-task-transition.sh +75 -0
  277. core/hooks/enforce-template.sh +143 -0
  278. core/hooks/enforce-verify.sh +112 -0
  279. core/hooks/enforce-wip-limit.sh +43 -0
  280. core/hooks/enforce-zoom.sh +69 -0
  281. core/hooks/ensure-hub-up.sh +67 -0
  282. core/hooks/inject-mcp-caller-session.sh +70 -0
  283. core/hooks/jit-recall.sh +65 -0
  284. core/hooks/link-commit-to-task.sh +143 -0
  285. core/hooks/lint-task.sh +40 -0
  286. core/hooks/nudge-docs-first.sh +71 -0
  287. core/hooks/nudge-git-mode.sh +29 -0
  288. core/hooks/nudge-graph-os.sh +118 -0
  289. core/hooks/nudge-learn-narrative.sh +36 -0
  290. core/hooks/nudge-model-routing.sh +32 -0
  291. core/hooks/nudge-reentry.sh +101 -0
  292. core/hooks/nudge-reuse-first.sh +68 -0
  293. core/hooks/nudge-task-discovery.sh +81 -0
  294. core/hooks/nudge-thinking-os.sh +109 -0
  295. core/hooks/pr-reap.sh +23 -0
  296. core/hooks/reclaim-sweep.sh +58 -0
  297. core/hooks/record-verify-auto.sh +77 -0
  298. core/hooks/record-verify.sh +74 -0
  299. core/hooks/regen-reminder.sh +104 -0
  300. core/hooks/registry.yaml +1262 -0
  301. core/hooks/remind-daily.sh +27 -0
  302. core/hooks/remind-dogfood.sh +70 -0
  303. core/hooks/remind-learn-validate.sh +94 -0
  304. core/hooks/rules-primer.sh +50 -0
  305. core/hooks/search-enforce-inventory.sh +108 -0
  306. core/hooks/search-verify-remaining.sh +132 -0
  307. core/hooks/session-context.sh +729 -0
  308. core/hooks/session-end.sh +145 -0
  309. core/hooks/session-skill-primer.sh +43 -0
  310. core/hooks/snapshot-transcript.sh +56 -0
  311. core/hooks/sync-task-current.sh +85 -0
  312. core/hooks/test-first-reminder.sh +120 -0
  313. core/hooks/test-governor.sh +173 -0
  314. core/hooks/thinking_os-gate.sh +52 -0
  315. core/hooks/track-backtrack.sh +35 -0
  316. core/hooks/track-discovery.sh +121 -0
  317. core/hooks/track-skill.sh +53 -0
  318. core/hooks/validate-task-frontmatter.sh +49 -0
  319. core/hooks/verify-rename-callers.sh +119 -0
  320. core/hooks/warn-abandoned-task.sh +99 -0
  321. core/hooks/warn-destructive-edit.sh +64 -0
  322. core/hooks/warn-diff-size.sh +43 -0
  323. core/hooks/warn-graph-empty.sh +81 -0
  324. core/hooks/warn-mcp-down.sh +190 -0
  325. core/hooks/write-state.sh +55 -0
  326. core/logging_os/__init__.py +33 -0
  327. core/logging_os/api.py +127 -0
  328. core/logging_os/bridge.py +80 -0
  329. core/logging_os/config.py +172 -0
  330. core/logging_os/fingerprint.py +25 -0
  331. core/logging_os/redact.py +53 -0
  332. core/logging_os/render.py +83 -0
  333. core/logging_os/sinks.py +164 -0
  334. core/rules/anti-overengineering.md +44 -0
  335. core/rules/api-contract-discipline.md +41 -0
  336. core/rules/dimension-registry.md +155 -0
  337. core/rules/git-workflow.md +57 -0
  338. core/rules/memory.md +46 -0
  339. core/rules/model-routing.md +22 -0
  340. core/rules/skill-enforcement.md +75 -0
  341. core/rules/test-discipline.md +38 -0
  342. core/rules/thinking_os.md +48 -0
  343. core/rules/transparency-banner.md +37 -0
  344. core/runtime_paths.yaml +36 -0
  345. core/scaffold_manifest.json +14430 -0
  346. core/scheduled/__init__.py +0 -0
  347. core/scheduled/_activity.py +126 -0
  348. core/scheduled/_state.py +113 -0
  349. core/scheduled/config.py +86 -0
  350. core/scheduled/dep_reconcile.py +135 -0
  351. core/scheduled/error_sweep.py +137 -0
  352. core/scheduled/nightly.py +930 -0
  353. core/scheduled/responsive_extract.py +65 -0
  354. core/schemas/adapter.schema.json +269 -0
  355. core/schemas/preset.schema.json +50 -0
  356. core/schemas/skill.schema.json +81 -0
  357. core/schemas/stack.schema.json +404 -0
  358. core/scripts/_lib.sh +9 -0
  359. core/scripts/docs-lint.sh +228 -0
  360. core/scripts/docs-nav-fix.sh +133 -0
  361. core/scripts/docs-staleness-check.sh +154 -0
  362. core/scripts/install-adapter.sh +266 -0
  363. core/scripts/link-stack-skills.sh +52 -0
  364. core/scripts/log-latest.sh +106 -0
  365. core/scripts/log-search.sh +89 -0
  366. core/scripts/log-write.sh +134 -0
  367. core/scripts/ref-resolve.sh +71 -0
  368. core/skills/a11y/SKILL.md +305 -0
  369. core/skills/a11y/assets/a11y-checklist.md +137 -0
  370. core/skills/a11y/references/aria-and-focus.md +247 -0
  371. core/skills/a11y/references/rn-accessibility.md +343 -0
  372. core/skills/a11y/references/screen-reader-testing.md +190 -0
  373. core/skills/agent-memory/SKILL.md +191 -0
  374. core/skills/agent-memory/assets/memory-checklist.md +21 -0
  375. core/skills/agent-memory/references/memory-recipes.md +57 -0
  376. core/skills/api-design/SKILL.md +232 -0
  377. core/skills/api-design/assets/api-design-checklist.md +110 -0
  378. core/skills/api-design/references/error-envelope.md +381 -0
  379. core/skills/api-design/references/idempotency-pagination.md +312 -0
  380. core/skills/api-design/references/rest-contracts.md +426 -0
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  1051. templates/nextjs/scaffold/docs/pages-content-spec/00-index.md +78 -0
  1052. templates/nextjs/scaffold/docs/playbooks/content-seo.md +55 -0
  1053. templates/nextjs/scaffold/docs/playbooks/docs-governance.md +51 -0
  1054. templates/nextjs/scaffold/docs/playbooks/frontend-ui.md +63 -0
  1055. templates/nextjs/scaffold/src/frontend/app/layout.tsx +14 -0
  1056. templates/nextjs/scaffold/src/frontend/app/page.tsx +3 -0
  1057. templates/nextjs/scaffold/src/frontend/eslint.config.js +17 -0
  1058. templates/nextjs/scaffold/src/frontend/lib/greeting.test.ts +9 -0
  1059. templates/nextjs/scaffold/src/frontend/lib/greeting.ts +3 -0
  1060. templates/nextjs/scaffold/src/frontend/package.json +28 -0
  1061. templates/nextjs/scaffold/src/frontend/tsconfig.json +18 -0
  1062. templates/nextjs/scaffold/src/frontend/vitest.config.ts +10 -0
  1063. templates/nextjs/scaffold-boundary.yaml +30 -0
  1064. templates/nextjs/skills/nextjs-react/SKILL.md +485 -0
  1065. templates/nextjs/skills/nextjs-react/references/anatomy.md +116 -0
  1066. templates/nextjs/skills/nextjs-react/scripts/new_component.py +72 -0
  1067. templates/nextjs/stack.yaml +81 -0
  1068. templates/node-express/rules/backend.md +20 -0
  1069. templates/node-express/scaffold/docs/engineering/express-rules.md +30 -0
  1070. templates/node-express/scaffold/docs/playbooks/express-service.md +35 -0
  1071. templates/node-express/scaffold/src/backend/package.json +24 -0
  1072. templates/node-express/scaffold/src/backend/src/index.ts +17 -0
  1073. templates/node-express/scaffold/src/backend/src/middleware/error-handler.ts +12 -0
  1074. templates/node-express/scaffold/src/backend/src/routes/health.test.ts +33 -0
  1075. templates/node-express/scaffold/src/backend/src/routes/health.ts +7 -0
  1076. templates/node-express/scaffold/src/backend/tsconfig.json +15 -0
  1077. templates/node-express/scaffold/src/backend/types/express-bootstrap.d.ts +21 -0
  1078. templates/node-express/scaffold-boundary.yaml +25 -0
  1079. templates/node-express/skills/node-express/SKILL.md +70 -0
  1080. templates/node-express/skills/node-express/references/anatomy.md +63 -0
  1081. templates/node-express/stack.yaml +63 -0
  1082. templates/python/scaffold/docs/engineering/python-rules.md +27 -0
  1083. templates/python/scaffold/docs/playbooks/python-library.md +35 -0
  1084. templates/python/stack.yaml +60 -0
  1085. templates/rails/rules/backend.md +10 -0
  1086. templates/rails/scaffold/docs/engineering/rails-rules.md +33 -0
  1087. templates/rails/scaffold/docs/playbooks/rails-service.md +42 -0
  1088. templates/rails/scaffold/src/backend/Gemfile +12 -0
  1089. templates/rails/scaffold/src/backend/app/controllers/application_controller.rb +26 -0
  1090. templates/rails/scaffold/src/backend/app/controllers/health_controller.rb +6 -0
  1091. templates/rails/scaffold/src/backend/app/models/health.rb +6 -0
  1092. templates/rails/scaffold/src/backend/config/application.rb +12 -0
  1093. templates/rails/scaffold/src/backend/config/boot.rb +3 -0
  1094. templates/rails/scaffold/src/backend/config/routes.rb +4 -0
  1095. templates/rails/scaffold/src/backend/config.ru +5 -0
  1096. templates/rails/scaffold/src/backend/spec/rails_helper.rb +18 -0
  1097. templates/rails/scaffold/src/backend/spec/requests/health_spec.rb +24 -0
  1098. templates/rails/scaffold-boundary.yaml +25 -0
  1099. templates/rails/skills/rails/SKILL.md +62 -0
  1100. templates/rails/skills/rails/references/anatomy.md +71 -0
  1101. templates/rails/stack.yaml +72 -0
  1102. templates/react-native/rules/mobile.md +26 -0
  1103. templates/react-native/scaffold/docs/engineering/accessibility-mobile.md +95 -0
  1104. templates/react-native/scaffold/docs/engineering/mobile-rules.md +56 -0
  1105. templates/react-native/scaffold/docs/engineering/offline-first.md +61 -0
  1106. templates/react-native/scaffold/docs/playbooks/mobile-app.md +49 -0
  1107. templates/react-native/scaffold/src/mobile/App.tsx +9 -0
  1108. templates/react-native/scaffold/src/mobile/eslint.config.js +17 -0
  1109. templates/react-native/scaffold/src/mobile/package.json +23 -0
  1110. templates/react-native/scaffold/src/mobile/src/greeting.test.ts +9 -0
  1111. templates/react-native/scaffold/src/mobile/src/greeting.ts +3 -0
  1112. templates/react-native/scaffold/src/mobile/tsconfig.json +17 -0
  1113. templates/react-native/scaffold/src/mobile/vitest.config.ts +10 -0
  1114. templates/react-native/scaffold-boundary.yaml +30 -0
  1115. templates/react-native/skills/react-native-mobile/SKILL.md +119 -0
  1116. templates/react-native/skills/react-native-mobile/assets/rn-mobile-checklist.md +28 -0
  1117. templates/react-native/skills/react-native-mobile/references/anatomy.md +140 -0
  1118. templates/react-native/skills/react-native-mobile/references/rn-2026-practices.md +54 -0
  1119. templates/react-native/skills/react-native-mobile/scripts/new_screen.py +73 -0
  1120. templates/react-native/skills/react-native-mobile/versions.json +16 -0
  1121. templates/react-native/skills/react-native-patterns/SKILL.md +512 -0
  1122. templates/react-native/skills/react-native-patterns/assets/rn-review-checklist.md +26 -0
  1123. templates/react-native/skills/react-native-patterns/references/anatomy.md +62 -0
  1124. templates/react-native/skills/react-native-patterns/references/list-performance.md +70 -0
  1125. templates/react-native/skills/react-native-patterns/scripts/scan_rn_perf.py +77 -0
  1126. templates/react-native/stack.yaml +70 -0
  1127. templates/ruby-plain/scaffold/src/backend/Gemfile +8 -0
  1128. templates/ruby-plain/scaffold/src/backend/main.rb +3 -0
  1129. templates/ruby-plain/scaffold-boundary.yaml +23 -0
  1130. templates/ruby-plain/stack.yaml +50 -0
  1131. templates/rust-axum/rules/backend.md +20 -0
  1132. templates/rust-axum/scaffold/docs/engineering/rust-axum-rules.md +35 -0
  1133. templates/rust-axum/scaffold/docs/playbooks/rust-axum-service.md +43 -0
  1134. templates/rust-axum/scaffold/src/backend/Cargo.toml +20 -0
  1135. templates/rust-axum/scaffold/src/backend/src/app.rs +12 -0
  1136. templates/rust-axum/scaffold/src/backend/src/error.rs +48 -0
  1137. templates/rust-axum/scaffold/src/backend/src/main.rs +24 -0
  1138. templates/rust-axum/scaffold/src/backend/src/routes/health.rs +37 -0
  1139. templates/rust-axum/scaffold/src/backend/src/routes/mod.rs +2 -0
  1140. templates/rust-axum/scaffold-boundary.yaml +25 -0
  1141. templates/rust-axum/skills/rust/SKILL.md +73 -0
  1142. templates/rust-axum/skills/rust/references/anatomy.md +63 -0
  1143. templates/rust-axum/stack.yaml +65 -0
  1144. templates/rust-plain/scaffold/src/backend/Cargo.toml +6 -0
  1145. templates/rust-plain/scaffold/src/backend/src/main.rs +3 -0
  1146. templates/rust-plain/scaffold-boundary.yaml +23 -0
  1147. templates/rust-plain/stack.yaml +51 -0
  1148. templates/spring-boot/rules/backend.md +20 -0
  1149. templates/spring-boot/scaffold/docs/engineering/spring-boot-rules.md +35 -0
  1150. templates/spring-boot/scaffold/docs/playbooks/spring-boot-service.md +45 -0
  1151. templates/spring-boot/scaffold/src/backend/mvnw +302 -0
  1152. templates/spring-boot/scaffold/src/backend/pom.xml +69 -0
  1153. templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/Application.java +16 -0
  1154. templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/common/GlobalExceptionHandler.java +31 -0
  1155. templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthController.java +22 -0
  1156. templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthService.java +12 -0
  1157. templates/spring-boot/scaffold/src/backend/src/main/java/com/example/app/health/HealthStatus.java +4 -0
  1158. templates/spring-boot/scaffold/src/backend/src/test/java/com/example/app/health/HealthServiceTest.java +15 -0
  1159. templates/spring-boot/scaffold-boundary.yaml +26 -0
  1160. templates/spring-boot/skills/spring-boot/SKILL.md +84 -0
  1161. templates/spring-boot/skills/spring-boot/references/anatomy.md +63 -0
  1162. templates/spring-boot/stack.yaml +65 -0
  1163. templates/svelte-sveltekit/rules/frontend.md +20 -0
  1164. templates/svelte-sveltekit/scaffold/docs/engineering/svelte-sveltekit-rules.md +37 -0
  1165. templates/svelte-sveltekit/scaffold/docs/playbooks/svelte-sveltekit-app.md +36 -0
  1166. templates/svelte-sveltekit/scaffold/src/frontend/package.json +22 -0
  1167. templates/svelte-sveltekit/scaffold/src/frontend/src/app.html +12 -0
  1168. templates/svelte-sveltekit/scaffold/src/frontend/src/hooks.server.ts +14 -0
  1169. templates/svelte-sveltekit/scaffold/src/frontend/src/lib/components/Greeting.svelte +6 -0
  1170. templates/svelte-sveltekit/scaffold/src/frontend/src/lib/stores/count.test.ts +26 -0
  1171. templates/svelte-sveltekit/scaffold/src/frontend/src/lib/stores/count.ts +4 -0
  1172. templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+layout.svelte +24 -0
  1173. templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+page.svelte +9 -0
  1174. templates/svelte-sveltekit/scaffold/src/frontend/src/routes/+page.ts +7 -0
  1175. templates/svelte-sveltekit/scaffold/src/frontend/src/routes/health/+server.ts +7 -0
  1176. templates/svelte-sveltekit/scaffold/src/frontend/svelte.config.js +10 -0
  1177. templates/svelte-sveltekit/scaffold/src/frontend/tsconfig.json +7 -0
  1178. templates/svelte-sveltekit/scaffold/src/frontend/vite.config.ts +7 -0
  1179. templates/svelte-sveltekit/scaffold/src/frontend/vitest.config.ts +11 -0
  1180. templates/svelte-sveltekit/scaffold-boundary.yaml +29 -0
  1181. templates/svelte-sveltekit/skills/svelte/SKILL.md +90 -0
  1182. templates/svelte-sveltekit/skills/svelte/references/anatomy.md +62 -0
  1183. templates/svelte-sveltekit/stack.yaml +70 -0
  1184. templates/typescript-plain/scaffold/src/index.ts +3 -0
  1185. templates/typescript-plain/scaffold/tsconfig.json +13 -0
  1186. templates/typescript-plain/scaffold-boundary.yaml +22 -0
  1187. templates/typescript-plain/stack.yaml +44 -0
  1188. templates/vue-nuxt/rules/frontend.md +19 -0
  1189. templates/vue-nuxt/scaffold/docs/engineering/nuxt-rules.md +30 -0
  1190. templates/vue-nuxt/scaffold/docs/playbooks/nuxt-app.md +29 -0
  1191. templates/vue-nuxt/scaffold/src/frontend/app.vue +3 -0
  1192. templates/vue-nuxt/scaffold/src/frontend/nuxt.config.ts +11 -0
  1193. templates/vue-nuxt/scaffold/src/frontend/package.json +20 -0
  1194. templates/vue-nuxt/scaffold/src/frontend/pages/index.test.ts +19 -0
  1195. templates/vue-nuxt/scaffold/src/frontend/pages/index.vue +11 -0
  1196. templates/vue-nuxt/scaffold/src/frontend/vitest.config.ts +12 -0
  1197. templates/vue-nuxt/scaffold-boundary.yaml +26 -0
  1198. templates/vue-nuxt/skills/vue-nuxt/SKILL.md +57 -0
  1199. templates/vue-nuxt/skills/vue-nuxt/references/anatomy.md +60 -0
  1200. templates/vue-nuxt/stack.yaml +61 -0
  1201. templates/wordpress/rules/backend.md +19 -0
  1202. templates/wordpress/scaffold/docs/engineering/wordpress-rules.md +28 -0
  1203. templates/wordpress/scaffold/docs/playbooks/wordpress-service.md +29 -0
  1204. templates/wordpress/scaffold/src/backend/composer.json +17 -0
  1205. templates/wordpress/scaffold/src/backend/phpcs.xml.dist +11 -0
  1206. templates/wordpress/scaffold/src/backend/phpunit.xml +10 -0
  1207. templates/wordpress/scaffold/src/backend/plugin/inc/health.php +8 -0
  1208. templates/wordpress/scaffold/src/backend/plugin/plugin.php +28 -0
  1209. templates/wordpress/scaffold/src/backend/tests/HealthStatusTest.php +15 -0
  1210. templates/wordpress/scaffold/src/backend/theme/functions.php +18 -0
  1211. templates/wordpress/scaffold/src/backend/theme/style.css +11 -0
  1212. templates/wordpress/scaffold-boundary.yaml +23 -0
  1213. templates/wordpress/skills/wordpress/SKILL.md +110 -0
  1214. templates/wordpress/skills/wordpress/assets/wp-checklist.md +28 -0
  1215. templates/wordpress/skills/wordpress/references/wp-development.md +75 -0
  1216. templates/wordpress/skills/wordpress/references/wp-security.md +68 -0
  1217. templates/wordpress/skills/wordpress/scripts/scan_wp_smells.py +91 -0
  1218. templates/wordpress/skills/wordpress/versions.json +16 -0
  1219. templates/wordpress/stack.yaml +60 -0
  1220. thinking_os/__init__.py +1 -0
  1221. thinking_os/_agent_markers.py +32 -0
  1222. thinking_os/background.py +405 -0
  1223. thinking_os/bootstrap_outcomes.py +200 -0
  1224. thinking_os/budget.py +302 -0
  1225. thinking_os/capture.py +495 -0
  1226. thinking_os/cognition.py +516 -0
  1227. thinking_os/cognition_schemas.py +517 -0
  1228. thinking_os/compress.py +192 -0
  1229. thinking_os/concepts.py +233 -0
  1230. thinking_os/dashboard.py +159 -0
  1231. thinking_os/database.py +2883 -0
  1232. thinking_os/decay.py +393 -0
  1233. thinking_os/digest.py +295 -0
  1234. thinking_os/dispatcher.py +192 -0
  1235. thinking_os/dispatcher_helpers.py +48 -0
  1236. thinking_os/dispatchers/__init__.py +3 -0
  1237. thinking_os/dispatchers/default.py +47 -0
  1238. thinking_os/distill.py +192 -0
  1239. thinking_os/doc_indexer.py +905 -0
  1240. thinking_os/embeddings.py +943 -0
  1241. thinking_os/formula_composer.py +556 -0
  1242. thinking_os/gate_marker.py +75 -0
  1243. thinking_os/graph.py +296 -0
  1244. thinking_os/graph_indexer.py +360 -0
  1245. thinking_os/health_check.py +517 -0
  1246. thinking_os/impact.py +119 -0
  1247. thinking_os/memory_gc.py +356 -0
  1248. thinking_os/migrator_embeddings.py +318 -0
  1249. thinking_os/precision.py +194 -0
  1250. thinking_os/record_outcome.py +399 -0
  1251. thinking_os/repair.py +105 -0
  1252. thinking_os/retrieval_quality.py +239 -0
  1253. thinking_os/roles_state.py +168 -0
  1254. thinking_os/sanitizer.py +320 -0
  1255. thinking_os/server.py +3160 -0
  1256. thinking_os/session_enrich.py +272 -0
  1257. thinking_os/session_observe_worker.py +111 -0
  1258. thinking_os/session_startup.py +74 -0
  1259. thinking_os/session_summary.py +245 -0
  1260. thinking_os/task_analyzer.py +462 -0
  1261. thinking_os/task_parser.py +342 -0
  1262. thinking_os/task_sync.py +73 -0
  1263. thinking_os/tools/__init__.py +6 -0
  1264. thinking_os/tools/_shared.py +947 -0
  1265. thinking_os/tools/cognition.py +1867 -0
  1266. thinking_os/tools/docs.py +770 -0
  1267. thinking_os/tools/learning.py +2078 -0
  1268. thinking_os/tools/logs.py +79 -0
  1269. thinking_os/tools/memory.py +840 -0
  1270. thinking_os/tools/metrics.py +200 -0
  1271. thinking_os/tools/retrieve.py +415 -0
  1272. thinking_os/tools/routing.py +658 -0
  1273. thinking_os/tools/tasks.py +449 -0
  1274. thinking_os/tools/trajectory.py +181 -0
  1275. thinking_os/tracing.py +235 -0
  1276. web/__init__.py +5 -0
  1277. web/_cache.py +118 -0
  1278. web/_deps.py +56 -0
  1279. web/_envelope.py +85 -0
  1280. web/_project_context.py +140 -0
  1281. web/chat_providers.py +108 -0
  1282. web/init_jobs.py +216 -0
  1283. web/routes/__init__.py +25 -0
  1284. web/routes/_bounded_read.py +76 -0
  1285. web/routes/board.py +1089 -0
  1286. web/routes/cognition.py +1838 -0
  1287. web/routes/config.py +635 -0
  1288. web/routes/graph.py +513 -0
  1289. web/routes/health.py +180 -0
  1290. web/routes/hooks.py +288 -0
  1291. web/routes/hub.py +1219 -0
  1292. web/routes/logs.py +374 -0
  1293. web/routes/metrics.py +43 -0
  1294. web/routes/observability.py +400 -0
  1295. web/routes/patterns.py +227 -0
  1296. web/routes/presence.py +609 -0
  1297. web/routes/roles.py +446 -0
  1298. web/routes/scheduled.py +261 -0
  1299. web/routes/search.py +238 -0
  1300. web/routes/sessions.py +220 -0
  1301. web/routes/settings.py +363 -0
  1302. web/routes/stream.py +547 -0
  1303. web/security.py +157 -0
  1304. web/server.py +283 -0
cli/_init_helpers.py ADDED
@@ -0,0 +1,587 @@
1
+ """Helpers for `cos init` — target resolution, name validation, git init.
2
+
3
+ Separated from main.py to keep init logic testable and linear.
4
+ """
5
+
6
+ from __future__ import annotations
7
+
8
+ import re
9
+ import shutil
10
+ import subprocess
11
+ from dataclasses import dataclass
12
+ from enum import IntEnum
13
+ from pathlib import Path
14
+ from typing import TYPE_CHECKING
15
+
16
+ from cli._resources import scripts_dir
17
+
18
+ if TYPE_CHECKING:
19
+ from cli._data_types import AggregatedWorld
20
+
21
+ CODING_OS_ROOT = Path(__file__).resolve().parent.parent.parent
22
+ DEBUG_DIR = CODING_OS_ROOT / ".build" / "debug"
23
+ DEFAULT_DEBUG_NAME = "the-script-output"
24
+
25
+ NAME_REGEX = re.compile(r"^[a-z0-9][a-z0-9._-]{0,63}$")
26
+
27
+
28
+ def is_coding_os_source_tree(project: Path) -> bool:
29
+ """True when `project` is the coding-os meta-repo source tree itself.
30
+
31
+ The source tree ships a hand-written AGENTS.md (CLAUDE.md symlinks to it);
32
+ any scaffold path (init, add/remove-stack, module toggle) must detect this
33
+ and refuse to clobber it. Same telltale markers used by the init guard."""
34
+ return (project / "src" / "core" / "thinking_os" / "server.py").exists() and (
35
+ project / "src" / "cli" / "main.py"
36
+ ).exists()
37
+
38
+
39
+ class InitExit(IntEnum):
40
+ """Stable exit codes for `cos init` error paths.
41
+
42
+ FLAG_CONFLICT — mutually exclusive flags or unmet preconditions
43
+ TARGET_STATE — target exists non-empty, is a file, or OS error
44
+ BAD_NAME — --name does not match NAME_REGEX
45
+ """
46
+
47
+ FLAG_CONFLICT = 2
48
+ TARGET_STATE = 3
49
+ BAD_NAME = 4
50
+
51
+
52
+ class InitError(ValueError):
53
+ """Raised when init flags / target state are invalid."""
54
+
55
+ def __init__(self, message: str, exit_code: int = InitExit.FLAG_CONFLICT) -> None:
56
+ super().__init__(message)
57
+ self.exit_code = int(exit_code)
58
+
59
+
60
+ @dataclass(frozen=True)
61
+ class InitTarget:
62
+ path: Path
63
+ debug: bool
64
+ forced_empty: bool # True if we removed an existing non-empty dir
65
+ nested_in_git: bool # True if target sits inside an existing git repo
66
+
67
+
68
+ def validate_name(name: str) -> None:
69
+ """Raise InitError if `name` doesn't match the allowed regex."""
70
+ if not NAME_REGEX.match(name):
71
+ raise InitError(
72
+ f"invalid --name '{name}': must match ^[a-z0-9][a-z0-9._-]{{0,63}}$ "
73
+ "(lowercase, digits, dot/underscore/hyphen, no slashes/spaces)",
74
+ exit_code=InitExit.BAD_NAME,
75
+ )
76
+
77
+
78
+ def _safe_remove_tree(path: Path) -> None:
79
+ """Remove path whether it's a regular dir, symlink, or file.
80
+
81
+ shutil.rmtree on a symlink follows the link and wipes its destination,
82
+ which is dangerous. Detect symlinks and unlink them instead.
83
+ """
84
+ if path.is_symlink():
85
+ path.unlink()
86
+ elif path.is_dir():
87
+ shutil.rmtree(path)
88
+ elif path.exists():
89
+ path.unlink()
90
+
91
+
92
+ def _cwd_inside_coding_os(cwd: Path) -> bool:
93
+ """Return True if `cwd` is the coding-os source repo or inside it."""
94
+ try:
95
+ cwd.resolve().relative_to(CODING_OS_ROOT)
96
+ return True
97
+ except ValueError:
98
+ return False
99
+
100
+
101
+ def _is_nested_in_git(path: Path) -> bool:
102
+ """Return True if `path` has a git repo as an ancestor.
103
+
104
+ Walks up from path looking for a `.git` directory. Stops at filesystem
105
+ root. Note: checks ancestors, not `path` itself — a fresh empty dir is
106
+ not considered "nested" unless a parent has `.git`.
107
+ """
108
+ for ancestor in [path, *path.parents]:
109
+ if ancestor == path:
110
+ continue
111
+ if (ancestor / ".git").exists():
112
+ return True
113
+ return False
114
+
115
+
116
+ def _is_dir_empty(path: Path) -> bool:
117
+ return not any(path.iterdir())
118
+
119
+
120
+ def resolve_init_target(
121
+ *,
122
+ name: str | None,
123
+ project_dir: str | None,
124
+ debug: bool,
125
+ force: bool,
126
+ cwd: Path,
127
+ adopt: bool = False,
128
+ pre_wipe_hook: object | None = None,
129
+ ) -> InitTarget:
130
+ """Compute the final target directory for `cos init`.
131
+
132
+ Resolution order (see plan D1/D5/D6):
133
+ 1. --debug:
134
+ - must be inside coding-os repo
135
+ - --project-dir is mutually exclusive
136
+ - name = --name or DEFAULT_DEBUG_NAME
137
+ - target = <repo>/.build/debug/<name>
138
+ 2. --name: parent = --project-dir or cwd, target = parent/name
139
+ 3. --project-dir alone: target = that path
140
+ 4. else: target = cwd
141
+ """
142
+ if debug:
143
+ if project_dir is not None:
144
+ raise InitError(
145
+ "--debug and --project-dir are mutually exclusive",
146
+ exit_code=InitExit.FLAG_CONFLICT,
147
+ )
148
+ if not _cwd_inside_coding_os(cwd):
149
+ raise InitError(
150
+ "--debug requires running inside the coding-os source repo. "
151
+ f"Current cwd {cwd} is outside {CODING_OS_ROOT}. "
152
+ "Use --project-dir instead.",
153
+ exit_code=InitExit.FLAG_CONFLICT,
154
+ )
155
+ effective_name = name or DEFAULT_DEBUG_NAME
156
+ validate_name(effective_name)
157
+ target = DEBUG_DIR / effective_name
158
+ elif name is not None:
159
+ validate_name(name)
160
+ parent = Path(project_dir).absolute() if project_dir else cwd
161
+ target = parent / name
162
+ elif project_dir is not None:
163
+ target = Path(project_dir).absolute()
164
+ else:
165
+ target = cwd
166
+
167
+ # Use absolute() (not resolve()) so we can detect symlinks before they
168
+ # collapse. Only resolve AFTER the symlink rejection check below.
169
+ target = target.absolute()
170
+
171
+ forced_empty = False
172
+ try:
173
+ if target.is_symlink():
174
+ raise InitError(
175
+ f"target {target} is a symlink; refusing to scaffold into symlinked paths",
176
+ exit_code=InitExit.TARGET_STATE,
177
+ )
178
+ if target.exists():
179
+ if target.is_file():
180
+ raise InitError(
181
+ f"target {target} exists and is a file, not a directory",
182
+ exit_code=InitExit.TARGET_STATE,
183
+ )
184
+ # Fire pre-wipe hook BEFORE any destructive action so the caller
185
+ # can refuse operations on the coding-os repo itself (or any
186
+ # other sentinel target) without losing files.
187
+ if pre_wipe_hook is not None:
188
+ pre_wipe_hook(target) # type: ignore[misc]
189
+ # adopt overlays onto an existing repo: keep its contents in place,
190
+ # never refuse and never wipe (brownfield user code must survive).
191
+ if not _is_dir_empty(target) and not adopt:
192
+ if not force:
193
+ raise InitError(
194
+ f"target {target} is not empty. Use --force to overwrite.",
195
+ exit_code=InitExit.TARGET_STATE,
196
+ )
197
+ _safe_remove_tree(target)
198
+ target.mkdir(parents=True)
199
+ forced_empty = True
200
+ else:
201
+ target.mkdir(parents=True)
202
+ except OSError as exc:
203
+ raise InitError(
204
+ f"filesystem error preparing target {target}: {exc}",
205
+ exit_code=InitExit.TARGET_STATE,
206
+ ) from exc
207
+
208
+ return InitTarget(
209
+ path=target,
210
+ debug=debug,
211
+ forced_empty=forced_empty,
212
+ nested_in_git=_is_nested_in_git(target),
213
+ )
214
+
215
+
216
+ @dataclass(frozen=True)
217
+ class GitInitResult:
218
+ ran: bool
219
+ skipped_reason: str | None
220
+ error: str | None
221
+
222
+
223
+ def maybe_git_init(target: InitTarget, *, enabled: bool) -> GitInitResult:
224
+ """Run `git init -q` unless disabled or target is nested in git.
225
+
226
+ Per plan D7/D21: nested-in-git → skip silently; command failure → WARN
227
+ (caller decides how to surface), not FAIL.
228
+ """
229
+ if not enabled:
230
+ return GitInitResult(ran=False, skipped_reason="--no-git flag", error=None)
231
+ if target.nested_in_git:
232
+ return GitInitResult(ran=False, skipped_reason="nested in existing git repo", error=None)
233
+ if (target.path / ".git").exists():
234
+ return GitInitResult(ran=False, skipped_reason="already a git repo", error=None)
235
+ try:
236
+ proc = subprocess.run(
237
+ ["git", "init", "-q"],
238
+ cwd=str(target.path),
239
+ capture_output=True,
240
+ text=True,
241
+ timeout=30,
242
+ check=False,
243
+ )
244
+ except (FileNotFoundError, subprocess.TimeoutExpired) as exc:
245
+ return GitInitResult(ran=False, skipped_reason=None, error=str(exc))
246
+ if proc.returncode != 0:
247
+ return GitInitResult(
248
+ ran=False,
249
+ skipped_reason=None,
250
+ error=(proc.stderr or proc.stdout or "non-zero exit").strip(),
251
+ )
252
+ return GitInitResult(ran=True, skipped_reason=None, error=None)
253
+
254
+
255
+ # The coding-os runtime carve-outs that MUST be present even when the project
256
+ # already ships a baseline .gitignore (from `_base/scaffold`): the cognitive DB
257
+ # + WAL sidecars and the rendered, machine-local adapters never enter history.
258
+ # `ensure_gitignore` appends this block to any existing file that lacks it.
259
+ _RUNTIME_GITIGNORE_BLOCK = """\
260
+ # Databases (runtime — coding-os cognitive DB + WAL sidecars)
261
+ *.db
262
+ *.db-shm
263
+ *.db-wal
264
+ *.db.backup-*
265
+
266
+ # coding-os runtime state — keep only the tracked config files
267
+ .coding-os/*
268
+ !.coding-os/rag-config.yaml
269
+ !.coding-os/domain-config.json
270
+ !.coding-os/scrumban-config.yaml
271
+
272
+ # Rendered agent adapters — regenerated by `cos update`; they hold
273
+ # machine-absolute symlink paths that do not survive a clone.
274
+ .claude/
275
+ .codex/
276
+ .mcp.json
277
+ """
278
+
279
+ # Mirrors the meta-repo .gitignore's runtime-ignore intent, minus the
280
+ # meta-specific lines (web/ui build, scaffold un-ignores, golden un-ignores).
281
+ CONSUMER_GITIGNORE = (
282
+ """\
283
+ # coding-os project .gitignore — generated by `cos init`.
284
+
285
+ # Python
286
+ __pycache__/
287
+ *.pyc
288
+ *.pyo
289
+ .venv/
290
+ venv/
291
+ *.egg-info/
292
+ .mypy_cache/
293
+ .pytest_cache/
294
+ .ruff_cache/
295
+ .coverage
296
+ .coverage.*
297
+ htmlcov/
298
+ coverage.xml
299
+
300
+ # Node / frontend build output
301
+ node_modules/
302
+ dist/
303
+ build/
304
+
305
+ # Secrets & environment
306
+ .env
307
+ .env.*
308
+ !.env.example
309
+ *.pem
310
+ *.key
311
+
312
+ # Editor / OS noise
313
+ .idea/
314
+ .vscode/
315
+ *.swp
316
+ *.swo
317
+ .DS_Store
318
+ Thumbs.db
319
+
320
+ # Logs
321
+ *.log
322
+ changes.log
323
+
324
+ """
325
+ + _RUNTIME_GITIGNORE_BLOCK
326
+ )
327
+
328
+ _BASELINE_COMMIT_MESSAGE = "chore: scaffold coding-os project"
329
+
330
+
331
+ def ensure_gitignore(project: Path) -> bool:
332
+ """Write or top up a coding-os `.gitignore`. Idempotent.
333
+
334
+ No file → write the full template. A pre-existing file (a user's own, or the
335
+ `_base/scaffold` baseline copied at init) is never rewritten, but the runtime
336
+ carve-outs are appended when absent so the cognitive DB and rendered adapters
337
+ never land in history regardless of the baseline's contents.
338
+ """
339
+ gitignore = project / ".gitignore"
340
+ if not gitignore.exists():
341
+ gitignore.write_text(CONSUMER_GITIGNORE, encoding="utf-8")
342
+ return True
343
+ existing = gitignore.read_text(encoding="utf-8")
344
+ if any(line.strip() == ".coding-os/*" for line in existing.splitlines()):
345
+ return False
346
+ separator = "" if existing.endswith("\n") else "\n"
347
+ gitignore.write_text(existing + separator + "\n" + _RUNTIME_GITIGNORE_BLOCK, encoding="utf-8")
348
+ return True
349
+
350
+
351
+ @dataclass(frozen=True)
352
+ class InitialCommitResult:
353
+ committed: bool
354
+ skipped_reason: str | None
355
+ error: str | None
356
+
357
+
358
+ def maybe_initial_commit(target: InitTarget, *, enabled: bool) -> InitialCommitResult:
359
+ """Stage the freshly-scaffolded tree and make one baseline commit.
360
+
361
+ Runs only when `cos init` itself created the repo (caller passes
362
+ `git and git_result.ran`); a nested / pre-existing repo is left
363
+ untouched so we never sweep a parent project's working tree. Fail-open:
364
+ a missing committer identity falls back to a tool identity so a headless
365
+ / CI consumer still gets a clean baseline; any other failure is reported
366
+ (WARN), never fatal.
367
+ """
368
+ if not enabled:
369
+ return InitialCommitResult(committed=False, skipped_reason="no fresh repo", error=None)
370
+ try:
371
+ add = subprocess.run(
372
+ ["git", "add", "-A"],
373
+ cwd=str(target.path),
374
+ capture_output=True,
375
+ text=True,
376
+ timeout=30,
377
+ check=False,
378
+ )
379
+ if add.returncode != 0:
380
+ return InitialCommitResult(
381
+ committed=False,
382
+ skipped_reason=None,
383
+ error=(add.stderr or add.stdout or "git add failed").strip(),
384
+ )
385
+ commit_args = ["commit", "-q", "-m", _BASELINE_COMMIT_MESSAGE]
386
+ commit = subprocess.run(
387
+ ["git", *commit_args],
388
+ cwd=str(target.path),
389
+ capture_output=True,
390
+ text=True,
391
+ timeout=30,
392
+ check=False,
393
+ )
394
+ if commit.returncode != 0:
395
+ # Most common cause: no user.name/user.email configured. Retry
396
+ # once with a tool identity so the baseline always lands.
397
+ commit = subprocess.run(
398
+ [
399
+ "git",
400
+ "-c",
401
+ "user.name=coding-os",
402
+ "-c",
403
+ "user.email=init@coding-os.local",
404
+ *commit_args,
405
+ ],
406
+ cwd=str(target.path),
407
+ capture_output=True,
408
+ text=True,
409
+ timeout=30,
410
+ check=False,
411
+ )
412
+ if commit.returncode != 0:
413
+ return InitialCommitResult(
414
+ committed=False,
415
+ skipped_reason=None,
416
+ error=(commit.stderr or commit.stdout or "git commit failed").strip(),
417
+ )
418
+ except (FileNotFoundError, subprocess.TimeoutExpired) as exc:
419
+ return InitialCommitResult(committed=False, skipped_reason=None, error=str(exc))
420
+ return InitialCommitResult(committed=True, skipped_reason=None, error=None)
421
+
422
+
423
+ @dataclass(frozen=True)
424
+ class GitHooksResult:
425
+ installed: tuple[str, ...]
426
+ skipped_reason: str | None
427
+ error: str | None
428
+
429
+
430
+ def install_consumer_git_hooks(project: Path, *, enabled: bool) -> GitHooksResult:
431
+ """Copy the human-persona git hooks into the fresh repo's .git/hooks.
432
+
433
+ The bodies resolve `.claude/.codex` hooks at runtime, so the human
434
+ / Codex-GUI commit path — which bypasses every PreToolUse hook — still gets
435
+ the doc-anchor + commit-message backstop. Never clobbers a user's existing
436
+ hook; fail-open — a missing body / OS error is reported, never fatal.
437
+ """
438
+ if not enabled:
439
+ return GitHooksResult(installed=(), skipped_reason="no fresh repo", error=None)
440
+ hooks_dir = project / ".git" / "hooks"
441
+ if not (project / ".git").is_dir():
442
+ return GitHooksResult(installed=(), skipped_reason="no .git", error=None)
443
+ pairs = (
444
+ ("pre-commit", scripts_dir("_pre_commit_body.sh")),
445
+ ("commit-msg", scripts_dir("_commit_msg_body.sh")),
446
+ )
447
+ installed: list[str] = []
448
+ try:
449
+ hooks_dir.mkdir(parents=True, exist_ok=True)
450
+ for name, src in pairs:
451
+ if not src.is_file():
452
+ return GitHooksResult(
453
+ installed=tuple(installed),
454
+ skipped_reason=None,
455
+ error=f"hook body missing: {src.name}",
456
+ )
457
+ dst = hooks_dir / name
458
+ if dst.exists():
459
+ continue # never overwrite a user-authored hook
460
+ shutil.copy2(src, dst)
461
+ dst.chmod(0o755)
462
+ installed.append(name)
463
+ except OSError as exc:
464
+ return GitHooksResult(installed=tuple(installed), skipped_reason=None, error=str(exc))
465
+ return GitHooksResult(installed=tuple(installed), skipped_reason=None, error=None)
466
+
467
+
468
+ def ensure_agents_md(project: Path, world: AggregatedWorld) -> bool:
469
+ """Generate AGENTS.md from fragments if missing. Idempotent.
470
+
471
+ Returns True if the file was just created, False if it already existed.
472
+ Never overwrites user-customized AGENTS.md — the `if not exists` guard
473
+ is the contract that lets `init`, `add-adapter`, and `update` all call
474
+ this safely without clobbering edits.
475
+ """
476
+ from cli.renderer import render_agents_md
477
+ from cli.subsystems import module_state
478
+
479
+ agents_md = project / "AGENTS.md"
480
+ if agents_md.exists():
481
+ return False
482
+ agents_md.write_text(render_agents_md(world, module_state(project)), encoding="utf-8")
483
+ return True
484
+
485
+
486
+ def materialize_makefile_targets(project: Path, state: Path, world: AggregatedWorld) -> bool:
487
+ """Render stack-contributed make targets into a generated include and wire
488
+ it into the project Makefile.
489
+
490
+ Writes `world.makefile_targets` to ``<state>/Makefile.stacks`` and ensures
491
+ the project Makefile pulls it in via ``-include``. Returns True if anything
492
+ changed. The user-authored Makefile is never rewritten beyond ensuring the
493
+ single include line is present — so re-running on an edited Makefile is safe.
494
+ """
495
+ from cli.renderer import render_makefile_targets
496
+
497
+ stacks_path = state / "Makefile.stacks"
498
+ rendered = render_makefile_targets(world)
499
+ changed = not stacks_path.exists() or stacks_path.read_text(encoding="utf-8") != rendered
500
+ if changed:
501
+ stacks_path.parent.mkdir(parents=True, exist_ok=True)
502
+ stacks_path.write_text(rendered, encoding="utf-8")
503
+
504
+ # Wire the `-include` ONLY when a stack actually contributes targets. With an
505
+ # empty world (e.g. the meta stack) the .stacks file is just a placeholder, so
506
+ # adding an include to a hand-authored Makefile would dirty it on every `cos
507
+ # update` for no benefit — the line appears the moment a stack first contributes.
508
+ makefile = project / "Makefile"
509
+ if makefile.exists() and world.makefile_targets:
510
+ state_rel = (
511
+ state.relative_to(project).as_posix() if state.is_relative_to(project) else state.name
512
+ )
513
+ if _ensure_stacks_include(makefile, state_rel):
514
+ changed = True
515
+ return changed
516
+
517
+
518
+ def materialize_ci_workflow(project: Path, world: AggregatedWorld) -> bool:
519
+ """Render the delegating CI workflow into <project>/.github/workflows/ci.yml.
520
+
521
+ Consumer-owned and write-once (the `ensure_*` idiom): written when absent,
522
+ never overwritten — a `cos update` keeps any consumer edits. A world with no
523
+ verifiable targets renders nothing → no file.
524
+ """
525
+ from cli.renderer import render_ci_workflow
526
+
527
+ ci_path = project / ".github" / "workflows" / "ci.yml"
528
+ if ci_path.exists():
529
+ return False
530
+ rendered = render_ci_workflow(world)
531
+ if not rendered:
532
+ return False
533
+ ci_path.parent.mkdir(parents=True, exist_ok=True)
534
+ ci_path.write_text(rendered, encoding="utf-8")
535
+ return True
536
+
537
+
538
+ def materialize_dockerfiles(project: Path, world: AggregatedWorld) -> bool:
539
+ """Write a Dockerfile + .dockerignore at every category=backend stack root.
540
+
541
+ World-driven (overlay + relocation aware): the backend roots come from
542
+ `world.anatomy`, the language from the matching verify row's glob — so a bare
543
+ or exempt backend (no verify row, e.g. a `*-plain` stack) gets none, like
544
+ frontend/mobile/library. Consumer-owned and write-once: never overwrites an
545
+ existing file, so a `cos update` keeps the consumer's CMD/entrypoint edits.
546
+ """
547
+ from cli.renderer import language_for_glob, render_dockerfile, render_dockerignore
548
+
549
+ language_by_root: dict[str, str] = {}
550
+ for row in world.verify_rows:
551
+ if "/**" not in row.glob:
552
+ continue
553
+ language = language_for_glob(row.glob)
554
+ if language:
555
+ language_by_root.setdefault(row.glob.split("/**", 1)[0].rstrip("/"), language)
556
+
557
+ changed = False
558
+ for entry in world.anatomy:
559
+ if entry.category != "backend":
560
+ continue
561
+ root = entry.root.rstrip("/")
562
+ content = render_dockerfile(language_by_root.get(root, ""))
563
+ if not content:
564
+ continue
565
+ base = project / root if root else project
566
+ for name, text in (("Dockerfile", content), (".dockerignore", render_dockerignore())):
567
+ target = base / name
568
+ if target.exists():
569
+ continue
570
+ target.parent.mkdir(parents=True, exist_ok=True)
571
+ target.write_text(text, encoding="utf-8")
572
+ changed = True
573
+ return changed
574
+
575
+
576
+ def _ensure_stacks_include(makefile: Path, state_rel: str) -> bool:
577
+ text = makefile.read_text(encoding="utf-8")
578
+ if "Makefile.stacks" in text:
579
+ return False
580
+ include_line = f"-include {state_rel}/Makefile.stacks\n"
581
+ base_marker = f"include {state_rel}/Makefile.base\n"
582
+ if base_marker in text:
583
+ text = text.replace(base_marker, base_marker + include_line, 1)
584
+ else:
585
+ text = text.rstrip("\n") + "\n" + include_line
586
+ makefile.write_text(text, encoding="utf-8")
587
+ return True
cli/_resources.py ADDED
@@ -0,0 +1,100 @@
1
+ """Locate the bundled data trees (core/, adapters/, templates/, scripts/) at
2
+ runtime — correctly under BOTH a src-layout editable install and a built wheel.
3
+
4
+ The legacy `Path(__file__).parent.parent.parent / "src" / "core"` resolves the
5
+ *source checkout* and breaks once `cos` is pip/uvx-installed (site-packages has
6
+ no `src/` tree). Here we resolve relative to the installed `core` package so the
7
+ same code path works in either install mode. TASK-219.
8
+ """
9
+
10
+ from __future__ import annotations
11
+
12
+ import importlib.util
13
+ import os
14
+ from functools import lru_cache
15
+ from pathlib import Path
16
+
17
+
18
+ @lru_cache(maxsize=1)
19
+ def data_root() -> Path:
20
+ """Directory that CONTAINS the core/adapters/templates/scripts trees.
21
+
22
+ Source (editable) install -> `<repo>/src`; wheel install -> `site-packages`.
23
+ Both place `core/` directly inside this dir, so `data_root()/ "core"` etc.
24
+ resolve identically.
25
+ """
26
+ spec = importlib.util.find_spec("core")
27
+ if spec is not None and spec.origin:
28
+ # .../<root>/core/__init__.py -> <root>
29
+ return Path(spec.origin).resolve().parent.parent
30
+ # Fallback for an unusual import state: src/cli/_resources.py -> src/
31
+ return Path(__file__).resolve().parent.parent
32
+
33
+
34
+ def core_dir(*parts: str) -> Path:
35
+ """Path under the bundled `core` tree (hooks, commands, skills, rules, ...)."""
36
+ return data_root().joinpath("core", *parts)
37
+
38
+
39
+ def adapters_dir(*parts: str) -> Path:
40
+ """Path under the bundled `adapters` tree."""
41
+ return data_root().joinpath("adapters", *parts)
42
+
43
+
44
+ def templates_dir(*parts: str) -> Path:
45
+ """Path under the bundled `templates` tree (per-stack scaffolds)."""
46
+ return data_root().joinpath("templates", *parts)
47
+
48
+
49
+ def scripts_dir(*parts: str) -> Path:
50
+ """Path under the bundled `scripts` tree (git-hook bodies, installers)."""
51
+ return data_root().joinpath("scripts", *parts)
52
+
53
+
54
+ # ---------------------------------------------------------------------------
55
+ # Out-of-tree plugin overlay (community stacks / adapters) — mirrors the
56
+ # community-skill model (skill_commands.user_skills_dir / $COS_USER_SKILLS_DIR).
57
+ # A third party drops a stack at $COS_USER_TEMPLATES_DIR/<id>/stack.yaml or an
58
+ # adapter at $COS_USER_ADAPTERS_DIR/<id>/adapter.yaml and the registries
59
+ # discover it WITHOUT forking the repo. The bundled tree always wins on an id
60
+ # collision (a community plugin may not shadow a core stack/adapter).
61
+ # ---------------------------------------------------------------------------
62
+ def user_templates_dir() -> Path:
63
+ """Out-of-tree community-stack root. Override with $COS_USER_TEMPLATES_DIR."""
64
+ override = os.environ.get("COS_USER_TEMPLATES_DIR")
65
+ return Path(override) if override else Path.home() / ".coding-os" / "templates"
66
+
67
+
68
+ def user_adapters_dir() -> Path:
69
+ """Out-of-tree community-adapter root. Override with $COS_USER_ADAPTERS_DIR."""
70
+ override = os.environ.get("COS_USER_ADAPTERS_DIR")
71
+ return Path(override) if override else Path.home() / ".coding-os" / "adapters"
72
+
73
+
74
+ def user_modules_dir() -> Path:
75
+ """Out-of-tree community-module (subsystem) root. Override with $COS_USER_MODULES_DIR.
76
+
77
+ A plugin author drops a `<id>.yaml` here with a `modules:` block and
78
+ load_subsystems() merges it over the core registry WITHOUT forking the repo
79
+ (the bundled tree always wins on an id collision)."""
80
+ override = os.environ.get("COS_USER_MODULES_DIR")
81
+ return Path(override) if override else Path.home() / ".coding-os" / "modules.d"
82
+
83
+
84
+ def overlay_module_files() -> tuple[Path, ...]:
85
+ """User-overlay module YAML files that actually exist (see overlay_template_dirs)."""
86
+ d = user_modules_dir()
87
+ return tuple(sorted(d.glob("*.yaml"))) if d.is_dir() else ()
88
+
89
+
90
+ def overlay_template_dirs() -> tuple[Path, ...]:
91
+ """User-overlay template dirs that actually exist — empty in CI / a fresh
92
+ install, so default-resolving them is a no-op (no test pollution)."""
93
+ d = user_templates_dir()
94
+ return (d,) if d.is_dir() else ()
95
+
96
+
97
+ def overlay_adapter_dirs() -> tuple[Path, ...]:
98
+ """User-overlay adapter dirs that actually exist (see overlay_template_dirs)."""
99
+ d = user_adapters_dir()
100
+ return (d,) if d.is_dir() else ()