clinicedc 2.0.12__py3-none-any.whl → 2.0.14__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- {clinicedc-2.0.12.dist-info → clinicedc-2.0.14.dist-info}/METADATA +2 -2
- {clinicedc-2.0.12.dist-info → clinicedc-2.0.14.dist-info}/RECORD +101 -24
- edc_action_item/migrations/0017_auto_20190305_0123.py +1 -1
- edc_action_item/migrations/0030_edcpermissions.py +1 -1
- edc_adverse_event/migrations/0001_initial.py +1 -1
- edc_adverse_event/migrations/0002_auto_20190802_0059.py +1 -1
- edc_adverse_event/migrations/0008_auto_20220825_0451.py +1 -1
- edc_adverse_event/migrations/0009_auto_20220907_0157.py +1 -1
- edc_adverse_event/model_mixins/hospitaization/hospitalization_model_mixin.py +1 -3
- edc_analytics/__init__.py +3 -0
- edc_analytics/apps.py +8 -0
- edc_analytics/constants.py +26 -0
- edc_analytics/custom_tables/__init__.py +11 -0
- edc_analytics/custom_tables/age.py +72 -0
- edc_analytics/custom_tables/art.py +88 -0
- edc_analytics/custom_tables/bmi.py +125 -0
- edc_analytics/custom_tables/bp.py +103 -0
- edc_analytics/custom_tables/fasting.py +126 -0
- edc_analytics/custom_tables/fbg.py +98 -0
- edc_analytics/custom_tables/fbg_ogtt.py +384 -0
- edc_analytics/custom_tables/gender.py +12 -0
- edc_analytics/custom_tables/hba1c.py +87 -0
- edc_analytics/custom_tables/ogtt.py +95 -0
- edc_analytics/custom_tables/waist.py +105 -0
- edc_analytics/data.py +36 -0
- edc_analytics/row/__init__.py +4 -0
- edc_analytics/row/row_definition.py +43 -0
- edc_analytics/row/row_definitions.py +32 -0
- edc_analytics/row/row_statistics.py +88 -0
- edc_analytics/row/row_statistics_with_gender.py +115 -0
- edc_analytics/stata/__init__.py +1 -0
- edc_analytics/stata/get_stata_labels_from_model.py +44 -0
- edc_analytics/styler.py +93 -0
- edc_analytics/table.py +108 -0
- edc_analytics/urls.py +6 -0
- edc_appointment/migrations/0018_auto_20190305_0123.py +1 -1
- edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py +1 -1
- edc_auth/migrations/0012_auto_20191026_0034.py +1 -1
- edc_auth/migrations/0013_auto_20191026_0055.py +1 -1
- edc_auth/migrations/0025_permissions.py +1 -1
- edc_consent/migrations/0001_initial.py +1 -1
- edc_dashboard/migrations/0001_initial.py +1 -1
- edc_data_manager/migrations/0001_initial.py +1 -1
- edc_data_manager/migrations/0025_edcpermissions.py +1 -1
- edc_dx/__init__.py +6 -0
- edc_dx/apps.py +5 -0
- edc_dx/diagnoses.py +250 -0
- edc_dx/form_validators/__init__.py +2 -0
- edc_dx/form_validators/diagnosis_form_validator_mixin.py +54 -0
- edc_dx/form_validators/result_form_validator_mixin.py +65 -0
- edc_dx/utils.py +42 -0
- edc_dx_review/__init__.py +0 -0
- edc_dx_review/apps.py +5 -0
- edc_dx_review/auth_objects.py +13 -0
- edc_dx_review/auths.py +12 -0
- edc_dx_review/choices.py +24 -0
- edc_dx_review/constants.py +7 -0
- edc_dx_review/fieldsets.py +47 -0
- edc_dx_review/form_mixins/__init__.py +3 -0
- edc_dx_review/form_mixins/clinical_review_baseline_required_form_mixin.py +25 -0
- edc_dx_review/form_validator_mixins/__init__.py +6 -0
- edc_dx_review/form_validator_mixins/clinical_review_baseline_form_validator_mixin.py +7 -0
- edc_dx_review/form_validator_mixins/clinical_review_followup_form_validator_mixin.py +25 -0
- edc_dx_review/list_data.py +19 -0
- edc_dx_review/medical_date.py +195 -0
- edc_dx_review/migrations/0001_initial.py +307 -0
- edc_dx_review/migrations/0002_diagnosislocations_extra_value_and_more.py +32 -0
- edc_dx_review/migrations/0003_alter_diagnosislocations_options_and_more.py +148 -0
- edc_dx_review/migrations/0004_remove_diagnosislocations_edc_dx_revi_name_a39b40_idx_and_more.py +20 -0
- edc_dx_review/migrations/__init__.py +0 -0
- edc_dx_review/model_mixins/__init__.py +20 -0
- edc_dx_review/model_mixins/clinical_review_baseline_model_mixin.py +25 -0
- edc_dx_review/model_mixins/clinical_review_followup/__init__.py +5 -0
- edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_chol_model_mixin.py +54 -0
- edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_dm_model_mixin.py +54 -0
- edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_hiv_model_mixin.py +54 -0
- edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_htn_model_mixin.py +56 -0
- edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_model_mixin.py +25 -0
- edc_dx_review/model_mixins/dx_location_model_mixin.py +17 -0
- edc_dx_review/model_mixins/factory/__init__.py +4 -0
- edc_dx_review/model_mixins/factory/baseline_review_model_mixin_factory.py +55 -0
- edc_dx_review/model_mixins/factory/calculate_date.py +43 -0
- edc_dx_review/model_mixins/factory/dx_initial_review_model_mixin_factory.py +97 -0
- edc_dx_review/model_mixins/factory/followup_review_model_mixin_factory.py +39 -0
- edc_dx_review/model_mixins/factory/rx_initial_review_model_mixin_factory.py +69 -0
- edc_dx_review/model_mixins/followup_review/__init__.py +2 -0
- edc_dx_review/model_mixins/followup_review/followup_review_model_mixin.py +22 -0
- edc_dx_review/model_mixins/followup_review/hiv_followup_review_model_mixin.py +32 -0
- edc_dx_review/model_mixins/initial_review/__init__.py +6 -0
- edc_dx_review/model_mixins/initial_review/chol_initial_review_model_mixin.py +34 -0
- edc_dx_review/model_mixins/initial_review/hiv_initial_model_mixins.py +119 -0
- edc_dx_review/model_mixins/initial_review/ncd_initial_review_model_mixin.py +42 -0
- edc_dx_review/models.py +20 -0
- edc_dx_review/radio_fields.py +30 -0
- edc_dx_review/utils.py +220 -0
- edc_export/migrations/0004_auto_20190305_0123.py +1 -1
- edc_export/migrations/0013_edcpermissions.py +1 -1
- edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py +1 -1
- edc_vitals/model_mixins/blood_pressure_model_mixin.py +1 -0
- {clinicedc-2.0.12.dist-info → clinicedc-2.0.14.dist-info}/WHEEL +0 -0
- {clinicedc-2.0.12.dist-info → clinicedc-2.0.14.dist-info}/licenses/LICENSE +0 -0
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Metadata-Version: 2.4
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Name: clinicedc
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Version: 2.0.
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Version: 2.0.14
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Summary: A clinical trials data management framework built on Django
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Keywords: django,clinicedc,edc,clinical trials,research,data management,esource
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Author: Erik van Widenfelt, Jonathan Willitts
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Requires-Dist: twilio>=9.7.0
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Maintainer: Erik van Widenfelt
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Maintainer-email: Erik van Widenfelt <ew2789@gmail.com>
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Requires-Python: >=3.12, <3.14
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Project-URL: Changelog, https://github.com/clinicedc/clinicedc/blob/main/CHANGES
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Project-URL: Documentation, https://github.com/clinicedc/clinicedc/docs
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Project-URL: Homepage, https://github.com/clinicedc/clinicedc
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edc_analytics/row/row_definition.py,sha256=me9QGvDb7aijLPoRD_jey1cLkJ3TuBLkF6IpzoyV_Y4,1434
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edc_analytics/stata/get_stata_labels_from_model.py,sha256=3EjENwn-ACITNYQvkwahdvdMsefSR4V077EH43zF5ls,1463
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edc_analytics/styler.py,sha256=IvuKalHPSJLZTjzOKAt7wK2kCRRvZGL9_PxM70Vo68Q,3086
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edc_analytics/table.py,sha256=yt1XvKYJvk_VjsBl324iCRJNGofkq9yg0u0h5ZHVnvw,3752
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edc_appointment/migrations/0017_auto_20190201_0446.py,sha256=TIKyvuwgHVGEjX7zlNmSRYuCjj-Wv6aGl8Ssh4kkrXI,679
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edc_appointment/migrations/0020_auto_20190922_0439.py,sha256=mM9HZOjjUtE-DoL_Umz41jz1SyRTFo7uomB_Pbp8zQ4,575
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edc_auth/migrations/0001_initial.py,sha256=WngjFQWRyFpZTErODm6LFXJc06xwu7YHjWLpI5l9F08,2716
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edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py,sha256=
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edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py,sha256=qxASSPcKICTYa3ZYveS9hp1CFF879WIYDmxOe73ITm0,23092
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edc_auth/migrations/0002_auto_20180803_0515.py,sha256=6Ch7NyVYqefgT_0v-weOAUwRUuEDhaLSeA0_NnXxKjM,638
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edc_auth/migrations/0004_auto_20180804_2041.py,sha256=ck_GbmYszO2HfVMhvegPehE2T4lsQyYNuGeG2zr-S2M,530
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edc_auth/migrations/0009_userprofile_alternate_email.py,sha256=vRueOEzp5f2fvq38llSKcr3S98khzaTatVi98WI5W1U,466
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edc_auth/migrations/0011_auto_20191025_2335.py,sha256=lmZmvCM9haFv95Tga5D2-zQFvfwaLhIKm3QhHMr6-bI,988
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edc_auth/migrations/0013_auto_20191026_0055.py,sha256=0IG22yVit375TtrA0ykQZx9ctXOYciHdpMzM9X5AtRU,5732
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edc_auth/migrations/0024_alter_userprofile_export_format.py,sha256=nTpbe5aZ-JhIicK5xM-H390-RTeEjNzdBFDbYa34xBU,925
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edc_auth/migrations/0025_permissions.py,sha256=aAazWUPuNtJJ5nQpWwa0h1mulcoTEVHP-bO3a0z8lI0,3904
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edc_auth/migrations/0026_rename_permissions_edcpermissions.py,sha256=sLjWpZUDCp5ynsk1dC5MVCuJ9SVG8kD2zGXIF8pbxRk,337
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edc_auth/migrations/0027_alter_edcpermissions_options.py,sha256=IcLwiUe4uh8WVeZCwaKZ7WvmakfopWnJIxedY66f5xk,471
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edc_auth/migrations/0028_alter_role_options.py,sha256=4Ob3NvQCYInz06JH9UFfIVGTZYV7afqATjbn_Ye1Zj4,740
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edc_consent/migrations/0002_alter_edcpermissions_device_created_and_more.py,sha256=paH1V4RR3KaLYQHvpDnbnSzpAfsXB3jjWD51qL_OJv0,1534
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edc_consent/migrations/0003_edcpermissions_locale_created_and_more.py,sha256=RhjGmLpjbhhaDNKCzoLgxIUzBteVlSEZNn5Ve24CqA0,976
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edc_consent/migrations/0004_alter_edcpermissions_options_and_more.py,sha256=8g4GHIuyvUl8vNQzNSlpqhtRJfJSSVm616Ve0LWcQN4,1227
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edc_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py,sha256=YRLPeqmGt9wp5CV9h9EvkayEkcR_o6hlcMgOas3_pJw,1547
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edc_dashboard/migrations/0004_edcpermissions_locale_created_and_more.py,sha256=ixiVtOAtw69-fvHW3aHQSF7Yk-GFwBj2KFTM_RbJgE8,978
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edc_data_manager/migrations/0024_alter_dataquery_action_identifier_and_more.py,sha256=yzzkHecsRBBXhflfbW_iDIgUoBdBzwROWGZ0XDbHepk,637
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edc_data_manager/migrations/0028_alter_dataquery_options_alter_queryrule_options_and_more.py,sha256=EcA00ACxPHSuLJvcHEfWjQzJzs9FVBKvSSFrtflLHpA,1736
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edc_dx/form_validators/__init__.py,sha256=0Xdntahcc_2lYyYIdigkkcZMtfGTa1qX3C1zo0NW-eo,138
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edc_dx/form_validators/result_form_validator_mixin.py,sha256=4Yby5_ZZyNmqAanJENcQh-c_yMybi7JjI20_SbtCHu4,2492
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edc_dx_review/model_mixins/__init__.py,sha256=-Yga4EAzAyBO9Q6Wmtj9bfKujnVBFPxklp98pkhvijw,700
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+
edc_dx_review/model_mixins/clinical_review_baseline_model_mixin.py,sha256=Pt_P8wejad66krsuiYLjm6rWaWmdK8oM3xTfFjg3qHk,926
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edc_dx_review/model_mixins/clinical_review_followup/__init__.py,sha256=vhLjTnrXT89BYohT18JHRmxN8ua6I_KSBO-bkmJiP34,403
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904
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edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_chol_model_mixin.py,sha256=0926O-SKcTRLv06bCx-6VZSQXFryH5-W818_vakDRDA,1677
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edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_dm_model_mixin.py,sha256=LanclLOeI_FE85YeyuQk4_fmTVCHg8qoo3SJ3lEHrGw,1653
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+
edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_hiv_model_mixin.py,sha256=JDQX4YoDCKbFOMRr2yB-G3qBaHuhr9PefFYgnHrzuu0,1680
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+
edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_htn_model_mixin.py,sha256=6NtMzddh3eQjGpZwU7TmXbvKQ_XB7jZ0tb3KteMyqQA,1738
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908
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+
edc_dx_review/model_mixins/clinical_review_followup/clinical_review_followup_model_mixin.py,sha256=UoH1P_MHw4XL46FTLa4juYK9iYbXeki0OdicdTkBeS8,892
|
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909
|
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edc_dx_review/model_mixins/dx_location_model_mixin.py,sha256=aJYuHDUrJ8TPpMIuhBMT3QyIAVKua5bWrWyVhzKXYQE,425
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edc_dx_review/model_mixins/factory/__init__.py,sha256=IdBPEgN-mJm9v0vjSDLGc10v12pIp-NFpBi-E0y5Zmk,348
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+
edc_dx_review/model_mixins/factory/baseline_review_model_mixin_factory.py,sha256=mPdS6lOhlZ1e21ikxBkKjjqjg4ba9Oad3tiCgfJ_l3E,1746
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|
+
edc_dx_review/model_mixins/factory/calculate_date.py,sha256=wBLnTj3-JN70fp58uLvukmr0zfzVlVpYFut3-cXNdjM,1526
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edc_dx_review/model_mixins/factory/dx_initial_review_model_mixin_factory.py,sha256=FVf2NcwpA0rDBJNX_f5KSv0i7VmsEM47kIn7Zf500kw,3222
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edc_dx_review/model_mixins/factory/followup_review_model_mixin_factory.py,sha256=rlsct84TTyfbHkB1hdsHKEHE_FC_0TA1f_xgc_n7ufs,1246
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edc_dx_review/model_mixins/factory/rx_initial_review_model_mixin_factory.py,sha256=a98icJL6J31xEyYQ1eppVYTte-jPQdo9C2KdgpmwZ4g,2376
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edc_dx_review/model_mixins/followup_review/__init__.py,sha256=2vTnIxKhFrmxXDVdngv5RumwycrpnWh7FaMU8CA99LU,139
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edc_dx_review/model_mixins/followup_review/followup_review_model_mixin.py,sha256=41DfNIvUUd6NUbbjCMbC-5dBA5KEV3JQfTmtob88oSM,673
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edc_dx_review/model_mixins/followup_review/hiv_followup_review_model_mixin.py,sha256=HLTl0wUV4FUY5_uwww79ZzwircfQyjZ7FbV29lenrmc,1034
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edc_dx_review/model_mixins/initial_review/__init__.py,sha256=nSRBcgZcJnbACdazzI_1oJ9B5YHjAbvpCO3KlFsn510,250
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920
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edc_dx_review/model_mixins/initial_review/chol_initial_review_model_mixin.py,sha256=efe7lG6HiUPVROZNl9GYuUi_wRO0mBTkVHetwG48gCk,1000
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edc_dx_review/model_mixins/initial_review/hiv_initial_model_mixins.py,sha256=V99wib43CfTFdFB9-U7EAbpPbXDWHHJdHQcYkWODTX0,3641
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edc_dx_review/model_mixins/initial_review/ncd_initial_review_model_mixin.py,sha256=4EKYkCUGEBmLhH1gs2CikFAh7jP6aJWHfNBu9zc841o,1192
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edc_dx_review/models.py,sha256=j270tH76Fb-WYMc7nR_4JfIT9An5QQ-FSTiiGer4YUE,610
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edc_dx_review/radio_fields.py,sha256=bbQrzZoWtbQ7ywP3e8yR0d_uzW5rloqpgZT0zuLzbQ4,833
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925
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edc_dx_review/utils.py,sha256=i3dmJLzyaGwLlCY9GMDpDx8zWMCcFzcWA5zqSXOSiKo,6985
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edc_egfr/__init__.py,sha256=q9hW6cas07gJxgElFaN7AtUGzwTwHuXvexxGFej3_pQ,56
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edc_egfr/admin/__init__.py,sha256=X4SsX1UIcGwxzNHH2uG4rnLxLQiYcLJeGLi4agxnkEQ,79
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851
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edc_egfr/admin/egfr_drop_notification_admin_mixin.py,sha256=Chet4mYDfZI4ohYrAyyf4CymZE6jCkYUB7y7uSAP-rs,2431
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@@ -894,7 +971,7 @@ edc_export/managers.py,sha256=piE9G2TVtGc6nWKF7C-J7SEdyub-2f9bCpeID2upeWU,1202
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894
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edc_export/migrations/0001_initial.py,sha256=9DbV6QOtBpi7XRBueAdcw4YZkKeOJY2O6jhoWAbS1QU,59347
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edc_export/migrations/0002_auto_20180922_1843.py,sha256=0Qu02ZQcroXd0JNufE0H5QRpNcl2t3BXlmcOnt2DUNg,495
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edc_export/migrations/0003_auto_20181108_0353.py,sha256=EOKWHz85wvsdy2MVsfuZxPYiNEDiW7uCUSOaW1_Y5gU,1520
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897
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edc_export/migrations/0004_auto_20190305_0123.py,sha256=
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edc_export/migrations/0004_auto_20190305_0123.py,sha256=VuxCw4ki_uS_Jnyx7gMsFMSaGDnDQSCmCQ-28qHg8Vs,18255
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975
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edc_export/migrations/0005_exportdata_importdata.py,sha256=wwmna0PSA8EIsWFaYZ3KrtlNK3_88Hd-0Ob8kI8tVTo,1293
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899
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edc_export/migrations/0006_auto_20200512_0208.py,sha256=64dWWC__7Q7y6Ofnrp3EtGUMm1mN8QXBdo90LX4jAJ8,869
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edc_export/migrations/0007_auto_20200512_0452.py,sha256=bArviQEPu0y1XR3oqJNUn7TjIb-quc3RDIiTO2komtw,673
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@@ -903,7 +980,7 @@ edc_export/migrations/0009_auto_20210510_2036.py,sha256=F5wk4LVc5NHM1Xq1gOojB0oj
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903
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edc_export/migrations/0010_auto_20210910_1636.py,sha256=eiIpAJIAe63p9rgHZrmD1k-A-AlJtXYZCPJMAgNwYwo,641
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edc_export/migrations/0011_auto_20220215_2308.py,sha256=6OERqWBbmshSSmrhHknTytD2I_KYGcVBv-jd9QSar_g,1301
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edc_export/migrations/0012_auto_20220704_1841.py,sha256=-cSkGlWNAyeDGrYBvxbrtdcVtwmRwxs3Br6VCVTXwOQ,3017
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906
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-
edc_export/migrations/0013_edcpermissions.py,sha256=
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983
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+
edc_export/migrations/0013_edcpermissions.py,sha256=vU4YDZE29mPob-U_vPkuHOx_LEVCy8G6bc-JE5_kkMI,3670
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907
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edc_export/migrations/0014_alter_plan_options.py,sha256=JYJ1qFQKIi1AuPcr-vLID1z6_P4CRN_muy7lMfpTZaI,720
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908
985
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edc_export/migrations/0015_alter_datarequest_managers_and_more.py,sha256=z-a8J09rXJM4147Km4yW6s6sqybBzZ9fvrQiQbdjvKQ,1834
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909
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edc_export/migrations/0016_alter_datarequest_device_created_and_more.py,sha256=VEBDPVGzGBgt9NDpr6ceSI6xsOr2XKiCLjW9GsMq1Mw,16453
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@@ -976,7 +1053,7 @@ edc_facility/migrations/0001_initial.py,sha256=lez34ZmETFkmkJFGKAgyKOZcMWIXm90lY
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976
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edc_facility/migrations/0002_auto_20180102_1158.py,sha256=7euFTkf0JP5C3-SzRcgys-fQoBTWz24SNRHIJVHFz3o,1180
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edc_facility/migrations/0003_auto_20190901_1100.py,sha256=9FCKSWu5F7Jhiq3lwtbR7wiLMpP8D3a_Re6nCSWKsJs,479
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978
1055
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edc_facility/migrations/0004_auto_20210423_1451.py,sha256=GmDtxRVp8jk-aQePPXfsHy2TzsNueY3bI51iPTLpBTQ,410
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979
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-
edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py,sha256=
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+
edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py,sha256=t_zdWZUEwGW0BL1Sft_rnphFtN7n5OYPaEzKx1K9_VA,17937
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980
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edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py,sha256=tL0ha1D_E9o4wvr9_J1VEPNrwYScnMSEoXmHmQNCjxY,674
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981
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edc_facility/migrations/0007_healthfacilitytypes_extra_value.py,sha256=6hKkWs0Xi1_t2AG8n3_BSUN1kup5lczbh8zmW2Yr0Ws,441
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982
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edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py,sha256=GeN_8KUMIIhIPPiyHoOHLJAOmiJopMfes4ug85Z0i9M,2831
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@@ -3316,7 +3393,7 @@ edc_vitals/form_validators/bmi_form_validator_mixin.py,sha256=rQMLHMOkqLUGT9c2-D
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3316
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edc_vitals/form_validators/weight_height_with_bmi_form_validator_mixin.py,sha256=cZDmENLbwnuKQd7jirq-oxkeTKU9wYNd0x-DTrf_ldk,553
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3317
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edc_vitals/migrations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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3318
3395
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edc_vitals/model_mixins/__init__.py,sha256=Nvu9-rNd0P5efB7KS74OHUE_AMJL_qtjUepEt0BuT8I,177
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3319
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-
edc_vitals/model_mixins/blood_pressure_model_mixin.py,sha256=
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edc_vitals/model_mixins/blood_pressure_model_mixin.py,sha256=BP9-rns3xDG40DoIFbkpzTSc78u68vNNddRxh8EXOEY,2054
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edc_vitals/model_mixins/weight_height_bmi_model_mixin.py,sha256=tI-F5wU3hMXbxWRIEWsOF0bbwt_JdBFgMYiluwn7JxA,1096
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edc_vitals/models/__init__.py,sha256=kojBDnW6CZiBORa4hn7CtVl0D6pku3i7M1t8uVoVhWg,210
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edc_vitals/models/fields/__init__.py,sha256=2mpaP8hoI0-4c5vlZZVoUFvGuy9rjfT7im3k8jykDyU,327
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@@ -3329,7 +3406,7 @@ edc_vitals/models/fields/waist_circumference.py,sha256=fZcHFDdEwWLjIVLktKrFCD9UU
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edc_vitals/models/fields/weight.py,sha256=zo9_9e3Cpu0UqoRbWS-iDkcDo6fK80b1dDQy4x4MyxE,921
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edc_vitals/utils.py,sha256=vXid44KUXxeaSyund_y5MNXc5DFJs052_PwUAjszE2k,1384
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edc_vitals/validators.py,sha256=vNiElWMs0rRnHRNuVoPLRf0rW_C_0xcfUyep1Y_Si5s,156
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clinicedc-2.0.
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clinicedc-2.0.
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clinicedc-2.0.
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clinicedc-2.0.
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3409
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+
clinicedc-2.0.14.dist-info/licenses/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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+
clinicedc-2.0.14.dist-info/WHEEL,sha256=-neZj6nU9KAMg2CnCY6T3w8J53nx1kFGw_9HfoSzM60,79
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3411
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+
clinicedc-2.0.14.dist-info/METADATA,sha256=a7A-WWb6AFZpj0BYTYZehRKcprgb84Jcbp9u6d9WzF4,15899
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clinicedc-2.0.14.dist-info/RECORD,,
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@@ -2,7 +2,7 @@
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2
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3
3
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import django_audit_fields.fields.hostname_modification_field
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import django_audit_fields.fields.userfield
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import
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import django.utils.timezone
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from django.db import migrations, models
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import django.utils.timezone
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import django_audit_fields.fields.hostname_modification_field
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import django_audit_fields.fields.userfield
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import django_audit_fields.fields.uuid_auto_field
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import
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+
import django.utils.timezone
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import django_revision.revision_field
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9
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from django.db import migrations, models
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import django.utils.timezone
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@@ -4,7 +4,7 @@ import _socket
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import django_audit_fields.fields.hostname_modification_field
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5
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import django_audit_fields.fields.userfield
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6
6
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import django_audit_fields.fields.uuid_auto_field
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7
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-
import
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7
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+
import django.utils.timezone
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8
8
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import django_revision.revision_field
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9
9
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from django.db import migrations, models
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10
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import django.utils.timezone
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@@ -4,7 +4,7 @@ import _socket
|
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4
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import django_audit_fields.fields.hostname_modification_field
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5
5
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import django_audit_fields.fields.userfield
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6
6
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import django_audit_fields.fields.uuid_auto_field
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7
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-
import
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7
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+
import django.utils.timezone
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8
8
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import django_revision.revision_field
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9
9
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from django.db import migrations, models
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10
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import django.utils.timezone
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@@ -4,7 +4,7 @@ import _socket
|
|
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4
4
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import django_audit_fields.fields.hostname_modification_field
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5
5
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import django_audit_fields.fields.userfield
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6
6
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import django_audit_fields.fields.uuid_auto_field
|
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7
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-
import
|
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7
|
+
import django.utils.timezone
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8
8
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import django_revision.revision_field
|
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9
9
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from django.db import migrations, models
|
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10
10
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import django.utils.timezone
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@@ -4,7 +4,7 @@ import _socket
|
|
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4
4
|
import django_audit_fields.fields.hostname_modification_field
|
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5
5
|
import django_audit_fields.fields.userfield
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6
6
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import django_audit_fields.fields.uuid_auto_field
|
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7
|
-
import
|
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7
|
+
import django.utils.timezone
|
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8
8
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import django_revision.revision_field
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9
9
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from django.db import migrations, models
|
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10
10
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import django.utils.timezone
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|
@@ -54,9 +54,7 @@ class HospitalizationModelMixin(NonUniqueSubjectIdentifierFieldMixin, models.Mod
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)
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55
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|
narrative = models.TextField(
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verbose_name="Narrative",
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max_length=500,
|
|
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|
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blank=True,
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+
verbose_name="Narrative", max_length=500, blank=True, default=""
|
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)
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|
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62
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|
class Meta(NonUniqueSubjectIdentifierFieldMixin.Meta):
|
edc_analytics/apps.py
ADDED
|
@@ -0,0 +1,26 @@
|
|
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1
|
+
MEAN_95CI = "mean_95ci"
|
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2
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+
MEAN_RANGE = "mean_range"
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+
MEAN_SD = "mean_sd"
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+
MEDIAN_IQR = "median_iqr"
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MEDIAN_RANGE = "median_range"
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6
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+
N_MEAN = "n_mean"
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|
+
N_ONLY = "n_only"
|
|
8
|
+
N_RANGE = "n_range"
|
|
9
|
+
N_WITH_COL_PROP = "n_with_col_prop"
|
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10
|
+
N_WITH_ROW_PROP: str = "n_with_row_prop"
|
|
11
|
+
|
|
12
|
+
COUNT_COLUMN = "count"
|
|
13
|
+
TITLE_COLUMN = "title"
|
|
14
|
+
|
|
15
|
+
STATISTICS = [
|
|
16
|
+
MEAN_95CI,
|
|
17
|
+
MEAN_RANGE,
|
|
18
|
+
MEAN_SD,
|
|
19
|
+
MEDIAN_IQR,
|
|
20
|
+
MEDIAN_RANGE,
|
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|
+
N_MEAN,
|
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22
|
+
N_ONLY,
|
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23
|
+
N_RANGE,
|
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24
|
+
N_WITH_COL_PROP,
|
|
25
|
+
N_WITH_ROW_PROP,
|
|
26
|
+
]
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
from .age import AgeTable
|
|
2
|
+
from .art import ArtTable
|
|
3
|
+
from .bmi import BmiTable
|
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4
|
+
from .bp import BpTable
|
|
5
|
+
from .fasting import FastingTable
|
|
6
|
+
from .fbg import FbgTable
|
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7
|
+
from .fbg_ogtt import FbgOgttTable
|
|
8
|
+
from .gender import GenderTable
|
|
9
|
+
from .hba1c import HbA1cTable
|
|
10
|
+
from .ogtt import OgttTable
|
|
11
|
+
from .waist import WaistCircumferenceTable
|
|
@@ -0,0 +1,72 @@
|
|
|
1
|
+
import pandas as pd
|
|
2
|
+
from edc_constants.constants import FEMALE, MALE
|
|
3
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+
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|
4
|
+
from ..constants import MEDIAN_RANGE, N_ONLY, N_WITH_COL_PROP, N_WITH_ROW_PROP
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|
5
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+
from ..row import RowDefinition, RowDefinitions
|
|
6
|
+
from ..table import Table
|
|
7
|
+
|
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8
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+
|
|
9
|
+
class AgeTable(Table):
|
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10
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+
|
|
11
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+
col_a = FEMALE
|
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12
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+
col_b = MALE
|
|
13
|
+
column_name = "gender"
|
|
14
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+
|
|
15
|
+
def __init__(self, main_df: pd.DataFrame = None):
|
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16
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+
super().__init__(colname="age_in_years", main_df=main_df, title="Age (years)")
|
|
17
|
+
|
|
18
|
+
@property
|
|
19
|
+
def row_definitions(self) -> RowDefinitions:
|
|
20
|
+
df_tmp = self.main_df.copy()
|
|
21
|
+
row_defs = RowDefinitions(reverse_rows=False)
|
|
22
|
+
row0 = RowDefinition(
|
|
23
|
+
title=self.title,
|
|
24
|
+
label=self.default_sublabel,
|
|
25
|
+
condition=(df_tmp[self.column_name].notna()),
|
|
26
|
+
columns={
|
|
27
|
+
self.col_a: (N_ONLY, 2),
|
|
28
|
+
self.col_b: (N_ONLY, 2),
|
|
29
|
+
"All": (N_ONLY, 2),
|
|
30
|
+
},
|
|
31
|
+
drop=False,
|
|
32
|
+
)
|
|
33
|
+
row_defs.add(row0)
|
|
34
|
+
columns = {
|
|
35
|
+
self.col_a: (N_WITH_COL_PROP, 2),
|
|
36
|
+
self.col_b: (N_WITH_COL_PROP, 2),
|
|
37
|
+
"All": (N_WITH_ROW_PROP, 2),
|
|
38
|
+
}
|
|
39
|
+
bin1 = (df_tmp[self.colname] >= 18) & (df_tmp[self.colname] < 35)
|
|
40
|
+
bin2 = (df_tmp[self.colname] >= 35) & (df_tmp[self.colname] < 50)
|
|
41
|
+
bin3 = (df_tmp[self.colname] >= 50) & (df_tmp[self.colname] < 65)
|
|
42
|
+
bin4 = df_tmp[self.colname] >= 65
|
|
43
|
+
row_defs.add(RowDefinition(label="18-34", condition=bin1, columns=columns, drop=False))
|
|
44
|
+
row_defs.add(RowDefinition(label="35-49", condition=bin2, columns=columns, drop=False))
|
|
45
|
+
row_defs.add(RowDefinition(label="50-64", condition=bin3, columns=columns, drop=False))
|
|
46
|
+
row_defs.add(
|
|
47
|
+
RowDefinition(label="65 and older", condition=bin4, columns=columns, drop=False)
|
|
48
|
+
)
|
|
49
|
+
if len(df_tmp[df_tmp[self.colname].isna()]) > 0:
|
|
50
|
+
row_defs.add(
|
|
51
|
+
RowDefinition(
|
|
52
|
+
colname="age_in_years",
|
|
53
|
+
label="not recorded",
|
|
54
|
+
condition=(df_tmp[self.colname].isna()),
|
|
55
|
+
columns=columns,
|
|
56
|
+
drop=False,
|
|
57
|
+
)
|
|
58
|
+
)
|
|
59
|
+
columns = {
|
|
60
|
+
self.col_a: (MEDIAN_RANGE, 2),
|
|
61
|
+
self.col_b: (MEDIAN_RANGE, 2),
|
|
62
|
+
"All": (MEDIAN_RANGE, 2),
|
|
63
|
+
}
|
|
64
|
+
row_defs.add(
|
|
65
|
+
RowDefinition(
|
|
66
|
+
colname="age_in_years",
|
|
67
|
+
label="Median (range)",
|
|
68
|
+
condition=(self.main_df[self.colname].notna()),
|
|
69
|
+
columns=columns,
|
|
70
|
+
)
|
|
71
|
+
)
|
|
72
|
+
return row_defs
|
|
@@ -0,0 +1,88 @@
|
|
|
1
|
+
import pandas as pd
|
|
2
|
+
from edc_constants.constants import FEMALE, MALE
|
|
3
|
+
|
|
4
|
+
from ..constants import N_ONLY, N_WITH_COL_PROP, N_WITH_ROW_PROP
|
|
5
|
+
from ..row import RowDefinition, RowDefinitions
|
|
6
|
+
from ..table import Table
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
class ArtTable(Table):
|
|
10
|
+
def __init__(self, main_df: pd.DataFrame = None):
|
|
11
|
+
super().__init__(colname=None, main_df=main_df, title="HIV Care")
|
|
12
|
+
|
|
13
|
+
@property
|
|
14
|
+
def row_definitions(self) -> RowDefinitions:
|
|
15
|
+
df_tmp = self.main_df.copy()
|
|
16
|
+
row_defs = RowDefinitions(reverse_rows=False)
|
|
17
|
+
row0 = RowDefinition(
|
|
18
|
+
title=self.title,
|
|
19
|
+
label=self.default_sublabel,
|
|
20
|
+
condition=(df_tmp["gender"].notna()),
|
|
21
|
+
columns={FEMALE: (N_ONLY, 2), MALE: (N_ONLY, 2), "All": (N_ONLY, 2)},
|
|
22
|
+
drop=False,
|
|
23
|
+
)
|
|
24
|
+
row_defs.add(row0)
|
|
25
|
+
columns = {
|
|
26
|
+
FEMALE: (N_WITH_COL_PROP, 2),
|
|
27
|
+
MALE: (N_WITH_COL_PROP, 2),
|
|
28
|
+
"All": (N_WITH_ROW_PROP, 2),
|
|
29
|
+
}
|
|
30
|
+
|
|
31
|
+
cond_art_stable = (
|
|
32
|
+
(df_tmp["on_rx_stable"] == "Yes")
|
|
33
|
+
& (df_tmp["vl_undetectable"] == "Yes")
|
|
34
|
+
& (df_tmp["art_six_months"] == "Yes")
|
|
35
|
+
)
|
|
36
|
+
row_defs.add(
|
|
37
|
+
RowDefinition(
|
|
38
|
+
label="Stable on ART (6m)",
|
|
39
|
+
condition=cond_art_stable,
|
|
40
|
+
columns=columns,
|
|
41
|
+
drop=True,
|
|
42
|
+
)
|
|
43
|
+
)
|
|
44
|
+
|
|
45
|
+
# look for anyone that is not stable by these three values
|
|
46
|
+
condition_partially_stable = (
|
|
47
|
+
(df_tmp["on_rx_stable"] == "Yes")
|
|
48
|
+
| (df_tmp["vl_undetectable"] == "Yes")
|
|
49
|
+
| (df_tmp["art_six_months"] == "Yes")
|
|
50
|
+
)
|
|
51
|
+
row_defs.add(
|
|
52
|
+
RowDefinition(
|
|
53
|
+
label="Other stable (`VL` or `on ART` or `stable 6m`)",
|
|
54
|
+
condition=condition_partially_stable,
|
|
55
|
+
columns=columns,
|
|
56
|
+
drop=True,
|
|
57
|
+
)
|
|
58
|
+
)
|
|
59
|
+
|
|
60
|
+
condition_other = (
|
|
61
|
+
(df_tmp["on_rx_stable"] == "No")
|
|
62
|
+
| (df_tmp["vl_undetectable"] == "No")
|
|
63
|
+
| (df_tmp["art_six_months"] == "No")
|
|
64
|
+
)
|
|
65
|
+
|
|
66
|
+
row_defs.add(
|
|
67
|
+
RowDefinition(
|
|
68
|
+
label="Other",
|
|
69
|
+
condition=condition_other,
|
|
70
|
+
columns=columns,
|
|
71
|
+
drop=True,
|
|
72
|
+
)
|
|
73
|
+
)
|
|
74
|
+
|
|
75
|
+
condition_not_recorded = (
|
|
76
|
+
(df_tmp["on_rx_stable"].isna())
|
|
77
|
+
& (df_tmp["vl_undetectable"].isna())
|
|
78
|
+
& (df_tmp["art_six_months"].isna())
|
|
79
|
+
)
|
|
80
|
+
row_defs.add(
|
|
81
|
+
RowDefinition(
|
|
82
|
+
label="Not recorded",
|
|
83
|
+
condition=condition_not_recorded,
|
|
84
|
+
columns=columns,
|
|
85
|
+
drop=True,
|
|
86
|
+
)
|
|
87
|
+
)
|
|
88
|
+
return row_defs
|