cellects 0.2.6__py3-none-any.whl → 0.3.0__py3-none-any.whl

cellects/utils/formulas.py

@@ -744,7 +744,7 @@ def get_contour_width_from_im_shape(im_shape: Tuple) -> int:
     int
         The calculated contour width.
     """
-    return np.max((np.round(np.log10(np.max(im_shape)) - 2).astype(int), 1))
+    return np.max((np.round(np.log10(np.max(im_shape)) - 2).astype(int), 2))
 
 def scale_coordinates(coord: NDArray, scale: Tuple, dims: Tuple) -> Tuple[NDArray[np.int64], np.int64, np.int64, np.int64, np.int64]:
     """
@@ -798,3 +798,5 @@ def scale_coordinates(coord: NDArray, scale: Tuple, dims: Tuple) -> Tuple[NDArra
     min_x = np.max((0, np.min(coord[:, 1])))
     max_x = np.min((dims[1], np.max(coord[:, 1])))
     return coord, min_y, max_y, min_x, max_x
+
+

cellects/utils/load_display_save.py

@@ -672,7 +672,7 @@ def read_rotate_crop_and_reduce_image(image_name: str, prev_img: NDArray, crop_c
     prev_img = img.copy()
     if crop_coord is not None:
         img = img[crop_coord[0]:crop_coord[1], crop_coord[2]:crop_coord[3], :]
-    img = img[cr[0]:(cr[1] + 1), cr[2]:(cr[3] + 1), :]
+    img = img[cr[0]:cr[1], cr[2]:cr[3], :]
     if reduce_image_dim:
         img = img[:, :, 0]
     return img, prev_img

{cellects-0.2.6.dist-info → cellects-0.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellects
-Version: 0.2.6
+Version: 0.3.0
 Summary: Cell Expansion Computer Tracking Software.
 Author: Aurèle Boussard
 License:                     GNU GENERAL PUBLIC LICENSE

{cellects-0.2.6.dist-info → cellects-0.3.0.dist-info}/RECORD

@@ -4,41 +4,41 @@ cellects/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/config/all_vars_dict.py,sha256=Vdu0JoIqwY6QPa8z_DDiZd5QTEdIhPkSvGDjyzX5GTU,6249
 cellects/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/core/cellects_paths.py,sha256=vwFEYXVAD16w0euoTuJ8Ca0tUyelsoiDNmWqryU5k-k,880
-cellects/core/cellects_threads.py,sha256=I3k-k7w4rnPHeJe-0furBzU6I4gBCZrFgiNWX477EOA,105390
-cellects/core/motion_analysis.py,sha256=R9a_ZL4qcj3pO3OlMSU6iTBCX9TggCMKaSIJBq9nkdc,97841
-cellects/core/one_image_analysis.py,sha256=YghJIVNjZLiTAsnNSxBQ8w_m5Xq5kfhQHyA-anrjqKQ,67361
-cellects/core/program_organizer.py,sha256=Quo34VH1qqeb6gmXw6TEil40gd80eRYB5xigL_8zUCg,89175
-cellects/core/script_based_run.py,sha256=00TecfdIseY7GuB63Vwpc1O2DcdLjn5F-SldcRPPoAM,7559
+cellects/core/cellects_threads.py,sha256=YRitz7JY5TVq9BSrqU3S8K-srW9gsFfkG16G3zVF--Y,96014
+cellects/core/motion_analysis.py,sha256=F2TpebmmvAgH0cY-P2J4CjqDxb_uB1BbAZlGcrGvVPI,99711
+cellects/core/one_image_analysis.py,sha256=Z5ztSmiRUeaJHGiTVPFOS_XbMtcjoER72g72Pa4_ziM,43557
+cellects/core/program_organizer.py,sha256=mJlznRrgMWxnPdAbrrkLtYQVhisvc4_WihpKSFIkDPA,92383
+cellects/core/script_based_run.py,sha256=EIGPK_pnyHLwExvCgM9C44LFOle9KKp_sRl0da4fA3o,7017
 cellects/gui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/gui/advanced_parameters.py,sha256=8lpXsSrLr7JZ0PUsl2rslddwU4KSNqWjmqUd68_u1Ng,77321
 cellects/gui/cellects.py,sha256=KpCOL1j3sBVcqp5l2epNc28knekGGLUYiLZ3XmEw5BE,8325
 cellects/gui/custom_widgets.py,sha256=tSB8sIPCJ8B10eTNrfj1iKoztSQS0iYX2WjYjGpI88o,34257
-cellects/gui/first_window.py,sha256=HZ_4ZmDMpDbNdEa-KVlMINKVqXyWGIZI7GYFcdLm0E8,28439
+cellects/gui/first_window.py,sha256=_uYruDNS2FTBMD-T4wUsUJjN6O3uJ_dI_Mf706Zrroo,28585
 cellects/gui/if_several_folders_window.py,sha256=9KcnWxzURtxS6ViyoWZVJ7dFBlH4XcRCCsWuL1v4L-c,13803
-cellects/gui/image_analysis_window.py,sha256=UDIRp20LcX-ORnyufJzGxcH-CW9XvasmVd3Kt0bKBm8,130692
+cellects/gui/image_analysis_window.py,sha256=DVd0b7IswiFyQIp3KxAWMreJoKQLBJ0r3QYEMFzSsvE,131348
 cellects/gui/required_output.py,sha256=ib3jXSzRuRzE_yU_ZNkrimCcq6NjAukz088T2Zgl95c,13654
-cellects/gui/ui_strings.py,sha256=ifkBJqHzitpTXEyMG_zp4sijPLLudSL2ot5DSn7FMdg,31116
+cellects/gui/ui_strings.py,sha256=_IdMR7Xalk6-USEQ3zNcUmFE04Tmf8QneLzvKs3rEOM,31181
 cellects/gui/video_analysis_window.py,sha256=hxIqEWKisJSV3tnceFQfVXkjmC_AuARCcqMZ5ucmGIQ,43340
 cellects/icons/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/icons/cellects_icon.icns,sha256=3GM5rpVKUoy-gAYEee5gGPh9lQx9KZqh9iRqYCT83Aw,393392
 cellects/icons/cellects_icon.ico,sha256=Eqlci8zZ0zdsRh2kSQAu4aHAPbR2NEzSbJPgaRQNenI,208076
 cellects/image_analysis/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/image_analysis/cell_leaving_detection.py,sha256=LtwLrjGXUVU6lBspSr3yN5UApun4-v4A23VBcP2A2ZU,5317
-cellects/image_analysis/image_segmentation.py,sha256=6ighRFLmCewnCOk-RFJDjMMh92Jo0se0K1P5g4okhEg,48876
-cellects/image_analysis/morphological_operations.py,sha256=M0uK3C1h0OH-SuE-hNJzJsK7RhHBNhlKBeAITOIVKkg,91452
+cellects/image_analysis/image_segmentation.py,sha256=QuoSQ01WM_4hS_QRFWkdpubSUU82attxZ-Ax4n9wirM,47095
+cellects/image_analysis/morphological_operations.py,sha256=ATkqIixqyTPl4ohp7siSjMJx-ep6s2-uibd_QzOIYhw,91380
 cellects/image_analysis/network_functions.py,sha256=QHBU09U8My3IQqzDhxcK9t6ZDhxhCac2mt5N1JwEfCI,107499
-cellects/image_analysis/one_image_analysis_threads.py,sha256=4mE6MTF1I9y3SIYQgZ1nj4b4DqJ5-BnwGqdQIVZvlpk,11607
+cellects/image_analysis/one_image_analysis_threads.py,sha256=Spq_LyGiVE4IhsnU8h0DS03c_Y_xHSeCzK2vPvyeah8,17675
 cellects/image_analysis/oscillations_functions.py,sha256=87dZAEVf4jzyVfM5_iFVsuUOJPxZ5gXSHsZsH3A7n7A,6853
 cellects/image_analysis/progressively_add_distant_shapes.py,sha256=WTIW0JZBPiVmnwP_vG18bp6BPRCsr0JPdGd1SEdUPUU,25719
-cellects/image_analysis/shape_descriptors.py,sha256=vuQvUGbajPG9VPxzgadmeBCLd2srBLRpaaebjdz8P1c,42995
+cellects/image_analysis/shape_descriptors.py,sha256=L9r4-Y-n4_k4hL1FpDbE1Plgo9Lq25sGkoZ4Lt9CnMY,41964
 cellects/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cellects/utils/decorators.py,sha256=kjZWSK71l5-LrrH7BZHb0kdFaAikC_qZu14_KjIUCms,361
-cellects/utils/formulas.py,sha256=xFURq95YpgQ42uPo41U7vj0iywcJq0fh5KjgFa8vvqo,25283
-cellects/utils/load_display_save.py,sha256=SxeEN4IVG-KA2BopsLH_ZI4OA9RQxNd8KiLLAnGW3ig,48981
+cellects/utils/formulas.py,sha256=C-koFJpqt42fUe4pfNO-5tzZqyEV90MyqmULt9CIYs8,25287
+cellects/utils/load_display_save.py,sha256=ZlqB7LFGrTphWCZBVDex0_ISZV4q3Xsmc9q_jyxVqSI,48969
 cellects/utils/utilitarian.py,sha256=mwGWUgrnaO_2Lne485cp0MxsCxtK68whK9O2fAJ725E,19735
-cellects-0.2.6.dist-info/LICENSE,sha256=RkNnEPPAi068Hv0ST1RwdKOi_Mc6Ukik5twIYPLWXjw,35176
-cellects-0.2.6.dist-info/METADATA,sha256=HX1JgLxbEGNyh_Y0kM8myr9ysL62x6KlHwyEItu7bRw,46231
-cellects-0.2.6.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
-cellects-0.2.6.dist-info/entry_points.txt,sha256=JT6rEvKpUuKyDPvfOYma-IMQNvfnKMstFMAoVJhXIGc,60
-cellects-0.2.6.dist-info/top_level.txt,sha256=8VlvCH4ka3bqugIpQnOVjc3UV9Vavfx5SXNyUV9_lGw,9
-cellects-0.2.6.dist-info/RECORD,,
+cellects-0.3.0.dist-info/LICENSE,sha256=RkNnEPPAi068Hv0ST1RwdKOi_Mc6Ukik5twIYPLWXjw,35176
+cellects-0.3.0.dist-info/METADATA,sha256=3XOypkc8hkgI-UwSyW6TDiwpKzsAhVGnBg1inIy__Fs,46231
+cellects-0.3.0.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
+cellects-0.3.0.dist-info/entry_points.txt,sha256=JT6rEvKpUuKyDPvfOYma-IMQNvfnKMstFMAoVJhXIGc,60
+cellects-0.3.0.dist-info/top_level.txt,sha256=8VlvCH4ka3bqugIpQnOVjc3UV9Vavfx5SXNyUV9_lGw,9
+cellects-0.3.0.dist-info/RECORD,,