celldetective 1.3.8__py3-none-any.whl → 1.3.9__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. celldetective/_version.py +1 -1
  2. celldetective/extra_properties.py +113 -17
  3. celldetective/filters.py +12 -12
  4. celldetective/gui/btrack_options.py +1 -1
  5. celldetective/gui/control_panel.py +1 -1
  6. celldetective/gui/gui_utils.py +4 -4
  7. celldetective/gui/measurement_options.py +1 -1
  8. celldetective/gui/plot_signals_ui.py +23 -6
  9. celldetective/gui/process_block.py +1 -1
  10. celldetective/gui/processes/measure_cells.py +4 -4
  11. celldetective/gui/processes/segment_cells.py +3 -3
  12. celldetective/gui/processes/track_cells.py +4 -4
  13. celldetective/gui/signal_annotator.py +26 -6
  14. celldetective/gui/signal_annotator2.py +1 -1
  15. celldetective/gui/signal_annotator_options.py +1 -1
  16. celldetective/gui/survival_ui.py +4 -1
  17. celldetective/gui/thresholds_gui.py +6 -5
  18. celldetective/io.py +1 -44
  19. celldetective/links/zenodo.json +233 -93
  20. celldetective/measure.py +22 -16
  21. celldetective/models/signal_detection/NucCond/classification_loss.png +0 -0
  22. celldetective/models/signal_detection/NucCond/classifier.h5 +0 -0
  23. celldetective/models/signal_detection/NucCond/config_input.json +1 -0
  24. celldetective/models/signal_detection/NucCond/log_classifier.csv +126 -0
  25. celldetective/models/signal_detection/NucCond/log_regressor.csv +282 -0
  26. celldetective/models/signal_detection/NucCond/regression_loss.png +0 -0
  27. celldetective/models/signal_detection/NucCond/regressor.h5 +0 -0
  28. celldetective/models/signal_detection/NucCond/scores.npy +0 -0
  29. celldetective/models/signal_detection/NucCond/test_confusion_matrix.png +0 -0
  30. celldetective/models/signal_detection/NucCond/test_regression.png +0 -0
  31. celldetective/models/signal_detection/NucCond/validation_confusion_matrix.png +0 -0
  32. celldetective/models/signal_detection/NucCond/validation_regression.png +0 -0
  33. celldetective/regionprops/__init__.py +1 -0
  34. celldetective/regionprops/_regionprops.py +310 -0
  35. celldetective/regionprops/props.json +63 -0
  36. celldetective/scripts/measure_relative.py +2 -20
  37. celldetective/segmentation.py +14 -4
  38. celldetective/utils.py +182 -171
  39. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/METADATA +1 -1
  40. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/RECORD +44 -29
  41. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/LICENSE +0 -0
  42. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/WHEEL +0 -0
  43. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/entry_points.txt +0 -0
  44. {celldetective-1.3.8.dist-info → celldetective-1.3.9.dist-info}/top_level.txt +0 -0
@@ -1,47 +1,47 @@
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  celldetective/__init__.py,sha256=bi3SGTMo6s2qQBsJAaKy-a4xaGcTQVW8zsqaiX5XKeY,139
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  celldetective/__main__.py,sha256=bxTlSvbKhqn3LW_azd2baDCnDsgb37PAP9DfuAJ1_5M,1844
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- celldetective/_version.py,sha256=47xEhOdVR5Y8-pZH8aVP6Z2UhhY8jGWTQ-rJHt5fIeU,22
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+ celldetective/_version.py,sha256=SaWgUI6v92kVfF_Qdoxbfc38bwA34RuDGZmXMqa5g3c,22
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  celldetective/events.py,sha256=UkjY_-THo6WviWWCLnDbma7jWOd_O9a60C4IOX2htG8,8254
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- celldetective/extra_properties.py,sha256=y556D6EMjLGhtjDqRoOTRGa85XxTIe0K1Asb26VZXmo,5643
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- celldetective/filters.py,sha256=DT3MyqNBSj3EMtb74oZUirdonKcwcowjtehTT72mrrk,4181
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- celldetective/io.py,sha256=kD8jvaZJHndlYXM-NwVjesKs8tRQNYiZJCH5VHmk2uA,123067
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- celldetective/measure.py,sha256=IfmyRaGzYjlTKh6uVBdn4qLEm6LgXQstb5NlB_Blc8I,58291
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+ celldetective/extra_properties.py,sha256=PUs-lltSj_jSko_Gd-w483OxZW6oR3BAHQrw51DUxMg,8081
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+ celldetective/filters.py,sha256=6pl2IGPK2FH8KPWbjzQEbT4C-ruqE1fQ8NQNN7Euvy8,4433
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+ celldetective/io.py,sha256=HEy9KbidrPVbzzbC1kJcXR0TsvIxNgRiDk31ecdjxpE,121954
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+ celldetective/measure.py,sha256=h1F08Vf7sy-20syMFZTUl1lHzE4h6cQvswJpwD9fcfE,58475
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  celldetective/neighborhood.py,sha256=s-zVsfGnPlqs6HlDJCXRh21lLiPKbA_S1JC6uZvfG_0,56712
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  celldetective/preprocessing.py,sha256=Wlt_PJua97CpMuWe_M65znUmz_yjYPqWIcs2ZK_RLgk,44109
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  celldetective/relative_measurements.py,sha256=-GWig0lC5UWAcJSPlo9Sp45khGj80fxuQfFk-bdBca0,30117
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- celldetective/segmentation.py,sha256=ul8E-cjjaWxaMZfjAtbrH7joUjxbZSeb77GL3Alp5Os,30779
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+ celldetective/segmentation.py,sha256=WApzoU1s3Ntvp0eIw_pRZXNwCA8LDKC9YoyR52tioz4,30943
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  celldetective/signals.py,sha256=nMyyGUpla8D2sUYKY1zjbWsAueVPI_gUalY0KXfWteI,111595
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  celldetective/tracking.py,sha256=VBJLd-1EeJarOVPBNEomhVBh9UYAMdSnH0tmUiUoTrY,40242
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- celldetective/utils.py,sha256=lX9W8H7y4z8B5DajUDqAoXlycJbIIzOmX7O-2b7eb04,108440
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+ celldetective/utils.py,sha256=RoNkCGCs9V3EiIn63N20qNKBQ_-H9bogF5LgByQ2UZo,106316
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  celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  celldetective/gui/InitWindow.py,sha256=TPKWYczhPHvPKWg654sXnE9xCEx6U-oWX0_OJgLTWbU,15044
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  celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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  celldetective/gui/about.py,sha256=FJZrj6C-p6uqp_3UaprKosuW-Sw9_HPNQAvFbis9Gdk,1749
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  celldetective/gui/analyze_block.py,sha256=h0sp7Tk3hZFM8w0yTidwIjZX4WRI-lQF3JCFObrLCPo,2761
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- celldetective/gui/btrack_options.py,sha256=ZXaJuCdqB_BK1CFRbgZErlAlXMbzDF2DP7opLSd6III,44682
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+ celldetective/gui/btrack_options.py,sha256=F2wrhuaNSaBr6vNApI22XSjdI5Cl3q138qCYBk-FDu4,44684
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  celldetective/gui/classifier_widget.py,sha256=nHWmaWXse2CxxRFmR4mA0JRADr5i0MsWldaqJQIQ-i8,19992
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  celldetective/gui/configure_new_exp.py,sha256=N4SdL-4Xo0XbTAkCtt1ywr74HmHc5eaPlHGv1XgxAX0,20772
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- celldetective/gui/control_panel.py,sha256=1TWUCvEif19ZLy4pDUupPrGzIKnG6Tg6kWGp_R8OSG4,22045
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+ celldetective/gui/control_panel.py,sha256=jFpedm03x6_jKabeadsNiigKnlh7sXCkulwe4gMCJaM,22042
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  celldetective/gui/generic_signal_plot.py,sha256=Gv4KhA5vhbgVSj5jteE42T0aNCoQZtmIAUkEsMi6JNA,36309
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- celldetective/gui/gui_utils.py,sha256=n9JVXBantJK3RFt8fQ7HJYKdCC4ezBMBwlgT5QT2I9o,39343
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+ celldetective/gui/gui_utils.py,sha256=lF3YqMecN_xEyFN_MS0j2KWYZoCnOvMmZeMj4lTRFu4,39335
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  celldetective/gui/json_readers.py,sha256=SkI_bR1MlAKd8NLBmQUVjJfZ7mKiU_FEjgC4dUwBACk,3698
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  celldetective/gui/layouts.py,sha256=XsqiHR58DXsG5SSD5S8KOtUv4yw-y-s2_wZx_XsHeJs,52013
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- celldetective/gui/measurement_options.py,sha256=cfiC4lq-XqY4Sa4Vkw5mys7JKaa9tE2BgeN8_k-SIDY,40355
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+ celldetective/gui/measurement_options.py,sha256=sxtQPKSixVbrFcBC1XLLC4-h7ZHlgTLcPfVAW2RVV7w,40357
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  celldetective/gui/neighborhood_options.py,sha256=FBNDvlzMPKp8s0Grxds90pCPHG1s27XrpMN0HV2gf0I,19839
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  celldetective/gui/plot_measurements.py,sha256=n0pDUcYcsKlSMaUaBSVplGziuWp_7jKaeXdREs-MqyI,50848
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- celldetective/gui/plot_signals_ui.py,sha256=u7b36pmjF8sf0Ctb9KCrnRcvAD3vlNaaIVkX3-rHCA0,17332
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- celldetective/gui/process_block.py,sha256=3v4q5kAq5uY6w0f3zyImXi_iTp8Qv2EFvzNjTEvqG9E,71210
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+ celldetective/gui/plot_signals_ui.py,sha256=7jCu-wLk_NDL4ThLZwhltODngre8iqPMUcEhJNNllo8,18189
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+ celldetective/gui/process_block.py,sha256=dH0zHIEouL8ApAD4uN7IR9dSl8X8QqE-hXL6U7HZHaM,71212
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  celldetective/gui/retrain_segmentation_model_options.py,sha256=7iawDN4kwq56Z-dX9kQe9tLW8B3YMrIW_D85LMAAYwk,23906
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  celldetective/gui/retrain_signal_model_options.py,sha256=GCa0WKKsgmH2CFDHAKxPGbHtCE19p1_bbcWNasyZw5o,22482
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  celldetective/gui/seg_model_loader.py,sha256=b1BiHuAf_ZqroE4jSEVCo7ASQv-xyWMPWU799alpbNM,19727
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- celldetective/gui/signal_annotator.py,sha256=9l_qbIO9V862eGk6mVOCXo0jsG8Z3WP9kx7wCBFGvKU,89014
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- celldetective/gui/signal_annotator2.py,sha256=qBDPk3UHmMoY4_i5KJt3Nr8kxjLOkYay_xNc6xrn_pE,106340
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- celldetective/gui/signal_annotator_options.py,sha256=ekxy7Qtw5EGqXa82KdZezaSlmprSAGMW2ZZoE1SObRM,11013
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+ celldetective/gui/signal_annotator.py,sha256=lf15PWZoWx2S1qZtrMsbBeZKtwVEKTjwwyIIG-XHdQA,89541
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+ celldetective/gui/signal_annotator2.py,sha256=RhcMX32FH_zg8GgAofGIyda9H8euSFADau301qi1NU0,106342
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+ celldetective/gui/signal_annotator_options.py,sha256=Tq20tybpelHFUqFCSemqH9es2FqM8S3I6Fab-u0FK0A,11015
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  celldetective/gui/styles.py,sha256=SZy_ACkA6QB_4ANyY1V0m1QF66C0SVGssOrwW1Qt1Aw,5076
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- celldetective/gui/survival_ui.py,sha256=J4ZYjX8ne0wT0ruQu9WL3WfLnRIAQalkaAR8ngb7PkI,14170
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+ celldetective/gui/survival_ui.py,sha256=Q-530cAK-SsKPr8sWFTbhGekB2CFLWd0SNjtV1Wr0oo,14202
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  celldetective/gui/tableUI.py,sha256=Yz_pHk1ERXRb0QsBPrvLEwAGpvVlawgn1b6uzz5wL_0,58022
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- celldetective/gui/thresholds_gui.py,sha256=VjCVBCDsNh_LoXfEqUn32nsYQwO9-Elh3Gl1RBv7acc,48756
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+ celldetective/gui/thresholds_gui.py,sha256=O7NkeaPV1nnQdTbduXd3lMttWPBzKcJ-9jI5OMr8H-0,48808
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  celldetective/gui/viewers.py,sha256=HDLB6j1FJwgKR6dQwzeHmcDvDMbDIYwD2svd-VZhJFE,47806
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  celldetective/gui/help/DL-segmentation-strategy.json,sha256=PZD9xXjrwbX3TiudHJPuvcyZD28o4k-fVgeTd7dBKzI,1583
@@ -56,9 +56,9 @@ celldetective/gui/help/propagate-classification.json,sha256=F7Ir1mtgRVTXWLN7n3ny
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  celldetective/gui/help/track-postprocessing.json,sha256=VaGd8EEkA33OL-EI3NXWZ8yHeWWyUeImDF5yAjsVYGA,3990
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  celldetective/gui/help/tracking.json,sha256=yIAoOToqCSQ_XF4gwEZCcyXcvQ3mROju263ZPDvlUyY,776
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  celldetective/gui/processes/downloader.py,sha256=SuMTuM82QOZBqLfj36I14fhZ2k3NmLp0PBcGUHxnpXI,3287
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- celldetective/gui/processes/measure_cells.py,sha256=1nJNHhLKHBL7kVsmmPbWv0NHcar0D8Gihjj_AD1UxnI,12851
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- celldetective/gui/processes/segment_cells.py,sha256=AVdRGuDnoQcrevk7itiEu5xluBeqaqXRSFVZAd7q91g,11313
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- celldetective/gui/processes/track_cells.py,sha256=og23iqc7WyVbpqsdygltVjejLGUVIb5ocxAForGnhl0,9947
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+ celldetective/gui/processes/measure_cells.py,sha256=MLkVLLuUtVVgwQB9a9N8eZ5TzF-Xtuhzb5wtcFRa1lU,12846
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+ celldetective/gui/processes/segment_cells.py,sha256=49Bh3nejkrxlLNhlP3Y_6-flkBOhkqFMQmrc2qDj7Dk,11320
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+ celldetective/gui/processes/track_cells.py,sha256=y8ohHAMcGtAjrJOP1WqvDfy_K85LbmdXoN7CA7BYpaY,9942
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  celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
@@ -70,7 +70,7 @@ celldetective/icons/splash0.png,sha256=qVXsrYUinm5g6-vbHcqwyjh8SIqs9lEqPWnPa1Wij
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- celldetective/links/zenodo.json,sha256=puCKI6vQi_L_7H70Nii_UzIqRcYVWUQGRKpTulyoHPo,30549
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+ celldetective/links/zenodo.json,sha256=Y1C0KFQ5K9rx8jXMLVbisU5Obg3389KK4MIpid3uWX8,34441
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+ celldetective/models/signal_detection/NucCond/log_classifier.csv,sha256=d1gX2DkQPc8qFJIFFZvFPkpQuAEPQHD_3IbcgU0cruI,24955
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+ celldetective/models/signal_detection/NucCond/log_regressor.csv,sha256=_Q5vt6V9Z_vZEmgM3pXgPBKUQlClNIRHDRt7iWry6dY,39505
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+ celldetective/regionprops/__init__.py,sha256=ohe9vC7j4lnpKnGXidVo1PVfoQfC8TqCuHTNo8rXmdg,44
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+ celldetective/regionprops/_regionprops.py,sha256=K1yHZDdLe81N9w73XMmRVLVsaMXJ3IE5VLP8ui6QsL4,9855
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+ celldetective/regionprops/props.json,sha256=sCwACmbh0n-JAw9eve9yV85REukoMBJLsRjxCwTRMm8,2424
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+ celldetective/scripts/measure_relative.py,sha256=wI7ibgWCsh5NVfcYum9LK0khL7cwKyCxwHFaXG4oWjM,3698
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  celldetective/scripts/segment_cells_thresholds.py,sha256=lsW5hsHenNPiyIwZuZHipeCN2Wer69VcLko5rS96GAU,5118
94
109
  celldetective/scripts/track_cells.py,sha256=_OPfn9BsbvdpAU4dg36SXmOTx_BkDkZL4N05X0_Tig4,8795
@@ -106,9 +121,9 @@ tests/test_segmentation.py,sha256=k1b_zIZdlytEdJcHjAUQEO3gTBAHtv5WvrwQN2xD4kc,34
106
121
  tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
107
122
  tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
108
123
  tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
109
- celldetective-1.3.8.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
110
- celldetective-1.3.8.dist-info/METADATA,sha256=z9xNWbdnrXwtyVXG_C8WjV8GR3bCl3Ivs8T9erqRwDs,10747
111
- celldetective-1.3.8.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
112
- celldetective-1.3.8.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
113
- celldetective-1.3.8.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
114
- celldetective-1.3.8.dist-info/RECORD,,
124
+ celldetective-1.3.9.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
125
+ celldetective-1.3.9.dist-info/METADATA,sha256=POcWapSbuacLCmplgT1JURcBQIQ25jNSigcN5ltnx5s,10747
126
+ celldetective-1.3.9.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
127
+ celldetective-1.3.9.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
128
+ celldetective-1.3.9.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
129
+ celldetective-1.3.9.dist-info/RECORD,,