celldetective 1.2.0__py3-none-any.whl → 1.2.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. celldetective/__main__.py +12 -5
  2. celldetective/events.py +28 -2
  3. celldetective/gui/about.py +0 -1
  4. celldetective/gui/analyze_block.py +3 -18
  5. celldetective/gui/btrack_options.py +126 -21
  6. celldetective/gui/classifier_widget.py +68 -107
  7. celldetective/gui/configure_new_exp.py +37 -4
  8. celldetective/gui/control_panel.py +14 -30
  9. celldetective/gui/generic_signal_plot.py +793 -0
  10. celldetective/gui/gui_utils.py +401 -226
  11. celldetective/gui/json_readers.py +0 -2
  12. celldetective/gui/layouts.py +269 -25
  13. celldetective/gui/measurement_options.py +14 -23
  14. celldetective/gui/neighborhood_options.py +6 -16
  15. celldetective/gui/plot_measurements.py +10 -23
  16. celldetective/gui/plot_signals_ui.py +53 -687
  17. celldetective/gui/process_block.py +320 -186
  18. celldetective/gui/retrain_segmentation_model_options.py +30 -47
  19. celldetective/gui/retrain_signal_model_options.py +5 -14
  20. celldetective/gui/seg_model_loader.py +129 -113
  21. celldetective/gui/signal_annotator.py +93 -103
  22. celldetective/gui/signal_annotator2.py +9 -13
  23. celldetective/gui/styles.py +32 -0
  24. celldetective/gui/survival_ui.py +49 -712
  25. celldetective/gui/tableUI.py +4 -39
  26. celldetective/gui/thresholds_gui.py +38 -11
  27. celldetective/gui/viewers.py +6 -7
  28. celldetective/io.py +62 -84
  29. celldetective/measure.py +374 -15
  30. celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json +130 -0
  31. celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal +0 -0
  32. celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json +37 -0
  33. celldetective/neighborhood.py +3 -7
  34. celldetective/preprocessing.py +2 -4
  35. celldetective/relative_measurements.py +0 -3
  36. celldetective/scripts/analyze_signals.py +0 -1
  37. celldetective/scripts/measure_cells.py +1 -3
  38. celldetective/scripts/measure_relative.py +1 -2
  39. celldetective/scripts/segment_cells.py +16 -12
  40. celldetective/scripts/segment_cells_thresholds.py +17 -10
  41. celldetective/scripts/track_cells.py +18 -18
  42. celldetective/scripts/train_segmentation_model.py +1 -2
  43. celldetective/scripts/train_signal_model.py +0 -3
  44. celldetective/segmentation.py +1 -1
  45. celldetective/signals.py +20 -8
  46. celldetective/tracking.py +2 -1
  47. celldetective/utils.py +126 -18
  48. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/METADATA +19 -12
  49. celldetective-1.2.2.dist-info/RECORD +92 -0
  50. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/WHEEL +1 -1
  51. celldetective-1.2.0.dist-info/RECORD +0 -88
  52. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/LICENSE +0 -0
  53. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/entry_points.txt +0 -0
  54. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,92 @@
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+ celldetective/__init__.py,sha256=PH25g2_AZt7N5Jg1KB3YT9wFvfMr9lIb2WxYzmDqlX4,105
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+ celldetective/__main__.py,sha256=Ua_3mAlW5Y53ih3rkZrAeYfvOc8-Xz6sZosyUCFtTZI,14842
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+ celldetective/events.py,sha256=D07LyzBerq4QkXKRhMj0ZChzNkqBrW45E9TgBtEa3tk,4735
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+ celldetective/extra_properties.py,sha256=8DkxTvVs7gASsnnGurVZ3_zt6uR0pvvJhBKO2LC6hGk,5118
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+ celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
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+ celldetective/io.py,sha256=ZenCko4gdyJE0hwdTb2DWEXhUJRoF5FwAcpgZRdZtAo,85024
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+ celldetective/measure.py,sha256=7bfCUdLfJbGmFWWwhu_C9-l1buj_-We7izBaFWTe4ok,54910
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+ celldetective/neighborhood.py,sha256=GjF_fTmtcU8jq5XZT-DnDSp28VDTrsaHjIGJG7W2Ppk,52799
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+ celldetective/preprocessing.py,sha256=iV5or20s8XPJXQZDsWzis7OBaqzPDyAo_cwcDVDuX5A,38188
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+ celldetective/relative_measurements.py,sha256=qPHC6gtUaICNGKh6Qfh8y6NA4OUJauGcaj9_TUbrswg,24998
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+ celldetective/segmentation.py,sha256=H_6BH_RKaG6injUPZ3gQzQ112pMyzQ33u5GEpLE9dsQ,30426
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+ celldetective/signals.py,sha256=485axzJwE3xsSsN4AmBQlZ2at7uWu9QRg0XrUHvLBUE,120552
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+ celldetective/tracking.py,sha256=HGeOtfQ-nmpaea9_Q-sq2WcwZfdPXRH028JyFlt6eUs,37901
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+ celldetective/utils.py,sha256=UkRHPHWZixj8HOI8pc79jgsRjWvpCkF-2lfJ9JfddgA,86311
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+ celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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+ celldetective/gui/about.py,sha256=fed6nh-WwKy6bEbavy6L62P0CQB8VsOO0PajOjHsnFk,1694
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+ celldetective/gui/analyze_block.py,sha256=sat8RECEeZxlaconZZIxI0IrIjwJo121PcBXqJmA1-o,24756
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+ celldetective/gui/btrack_options.py,sha256=OrvbG5coZhLRk5jtXiLFJu34z1hWHN9kHkBiZ7XMZoI,39269
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+ celldetective/gui/classifier_widget.py,sha256=hyonoHikEkqEsxtE1PZ6cFAn72KcxfSIp8H8PlFPL1c,15822
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+ celldetective/gui/configure_new_exp.py,sha256=Eyr-M4FH-4xrUJbIGNdKXAtXb_ULr8lCol26JSzXEww,20125
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+ celldetective/gui/control_panel.py,sha256=vU6dfjiO2nmDiY-qF2xCzcwDih6M87ItYTJOeOP51c8,19006
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+ celldetective/gui/generic_signal_plot.py,sha256=OzlFr2RxspkyxW1YIhl_c3q63RXAngMPouYPhEtk0S0,29509
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+ celldetective/gui/gui_utils.py,sha256=snYUefDEFpIP8RlsNG4QhfI0rLiVE9_t1E8Q7dMIj4k,27747
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+ celldetective/gui/json_readers.py,sha256=Su3angSobroeGrrumGgQcs3Cr_9l9p52-Hfm3qneVcI,3664
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+ celldetective/gui/layouts.py,sha256=feeAYh7I21ZgH-x4I7lg2DAvz5PBm71D7MovCrtb9QE,47325
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+ celldetective/gui/measurement_options.py,sha256=fDm8mlak8o9jC8OHhmou9kAmrVY8fCZ8ZKZ0bimhuPo,47133
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+ celldetective/gui/neighborhood_options.py,sha256=BvWwsIX1KWogUgHWRZptqY3ZRmH1aj7r8tiLmbRFhW4,19783
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+ celldetective/gui/plot_measurements.py,sha256=SBFkY3542hW4H_vllOCMxMOgBz09KUE2FLhhgI8avXk,51024
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+ celldetective/gui/plot_signals_ui.py,sha256=dQINAOyOmAOHMfmjfCsx1hJ7HGeCgNCq8kESuADbQqo,15864
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+ celldetective/gui/process_block.py,sha256=PdgKKEfr-GFad3P1y0n9LB_OaIBvuBuaQdBRtzRNhDg,72245
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+ celldetective/gui/retrain_segmentation_model_options.py,sha256=eGGrimwmNfJXRPRpZ6NZ74TWx6TK70HoNRHnJl1_8XQ,22292
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+ celldetective/gui/retrain_signal_model_options.py,sha256=XigNdGlNu3KWB_MYBcKQhfXjcWwVZNMmu0qmxNoo14E,21919
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+ celldetective/gui/seg_model_loader.py,sha256=vWvPMU6nkTiQfI-x2WjQHrdJGFdV4a4Ne-4YIOq_YZ8,18153
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+ celldetective/gui/signal_annotator.py,sha256=5Ho7o6lze3BWUbCKJ-53Jh4S46QlTmUq237FAAOfECA,87069
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+ celldetective/gui/signal_annotator2.py,sha256=Y43JSCg3bO_QL7zsqdeQ-FY8TNq_5WiV1cHO-knK0QE,109375
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+ celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
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+ celldetective/gui/styles.py,sha256=fup0_U1Zk0IJAjyruHde_r-X7d7cTMcrpPLPl-HuKAM,4820
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+ celldetective/gui/survival_ui.py,sha256=tzvtI0eC0bgd7Lfm20HqU7rfCJ60gy9a_Sc9cZLSKhs,9439
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+ celldetective/gui/tableUI.py,sha256=9yJ4CjeNAQoYdHXfsVvD0qr_IdYWuQwIBhvfU3QoNtc,40602
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+ celldetective/gui/thresholds_gui.py,sha256=t1hTDdaJTJWHBt9vtRCE4B1TsVHhobQwCpKfntVgaQI,50510
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+ celldetective/gui/viewers.py,sha256=mCyE9DaUX2rGq65oYEwyEfNtEUPrHdoFNg2MRp1kXs4,27701
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+ celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
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+ celldetective/icons/logo.png,sha256=wV2OS8_dU5Td5cgdPbCOU3JpMpTwNuYLnfVcnQX0tJA,2437
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+ celldetective/icons/signals_icon.png,sha256=vEiKoqWTtN0-uJgVqtAlwCuP-f4QeWYOlO3sdp2tg2w,3969
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+ celldetective/icons/splash-test.png,sha256=W9smcuuwJUF9DU-rz4aACx7_rCmGRsxYUGPBDlDnrJk,17523
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+ celldetective/icons/splash.png,sha256=J_1jPJylxwHGzGF1xCGocc-BmylHtHTII9VJSLKnezY,17895
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+ celldetective/icons/splash0.png,sha256=qVXsrYUinm5g6-vbHcqwyjh8SIqs9lEqPWnPa1WijaQ,14233
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+ celldetective/icons/survival2.png,sha256=8zsualD7d9VPAecoFA4Om9TFARErqpJzMg6U7XANXf4,4479
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+ celldetective/icons/vignette_signals2.png,sha256=hsVOdQDpEfMGM45aaSeacEm3lvxbquRKKYutiS9qoS0,20743
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+ celldetective/icons/vignette_signals2.svg,sha256=muGNcQudV1jG-bmFd9FwV-Wb8PcrRV5osdZ7pHR7Ekk,5947
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+ celldetective/links/zenodo.json,sha256=7WKRuZY7MHTR-IChWBbU0i47H_479NtlxsCGaJn9-xM,22728
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+ celldetective/models/pair_signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/segmentation_effectors/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/segmentation_effectors/primNK_cfse/config_input.json,sha256=gwEGP5wc6iVcwLrR5IbEb-9lTbdQuPyLLFYXh00374U,509
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+ celldetective/models/segmentation_effectors/primNK_cfse/cp-cfse-transfer,sha256=ps4BAzGxr2i2R0uBGJqfF9wjg5bIeSeBGQb0YcUChhY,26559970
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+ celldetective/models/segmentation_effectors/primNK_cfse/training_instructions.json,sha256=DqEO4_oQuQmJkZiefREXz8ts60svoqxIQB-LMScuCnc,909
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+ celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json,sha256=4KUHF-DAHcJgJf9wiGEd880qxRMRKCkiFjDi0PE7Dvg,10579
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+ celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal,sha256=xmTtQVIlrqLMitjS8WKhnVxcUFuJDbvmn0TghUMM6pE,26559153
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+ celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json,sha256=yIz0oMDX2lTCjwMO0PlRp_7B_RD9O9aMQizd-6SAQEc,831
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+ celldetective/models/segmentation_generic/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/segmentation_targets/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ celldetective/models/tracking_configs/mcf7.json,sha256=iDjb8i6yxs0GleW39dvY3Ld5bZJatlXJrwI8PG3vCT0,1780
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+ celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
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+ celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
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+ celldetective/scripts/analyze_signals.py,sha256=YE05wZujl2hQFWkvqATBcCx-cAd_V3RxnvKoh0SB7To,2194
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+ celldetective/scripts/measure_cells.py,sha256=L9TRc8B1_Y1jco29fWm4MVNicTFQNVeA_4Vbu3o_H1o,11735
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+ celldetective/scripts/measure_relative.py,sha256=L_NjIUfHSGupkAKLZkubBHJdZh0ugPhCTJem80b0zMM,4261
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+ celldetective/scripts/segment_cells.py,sha256=bnNacgp_6qpb1fvwPizxVctsUNiFBegKalo-PSpXPEU,8262
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+ celldetective/scripts/segment_cells_thresholds.py,sha256=6ERg-hxdHMSgXPQSBPtYt2lccTlkz9ZLktYgb57Avmw,5168
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+ celldetective/scripts/track_cells.py,sha256=ezNpenAYBz010iMZNRIk0qwGAceiXRLvY7ZxoQcT2IM,8052
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+ celldetective/scripts/train_segmentation_model.py,sha256=XExaGg8kkdirgN206J0mwiWtqeRE076-Ld2b89tReAI,9229
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+ celldetective/scripts/train_signal_model.py,sha256=D643wKVYg-LWHF2VU9FWKSuazXrpCpQK0YjGqoIimD0,3167
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+ tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ tests/test_events.py,sha256=eLFwwEEJfQAdwhews3-fn1HSvzozcNNFN_Qn0gOvQkE,685
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+ tests/test_filters.py,sha256=iJksl_HgquqGzPPv46qpNtlD4rkBpZ5eVtIotgZ7LDs,656
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+ tests/test_io.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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+ tests/test_measure.py,sha256=FEUAs1rVHylvIvubCb0bJDNGZLVmkgXNgI3NaGQ1dA8,4542
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+ tests/test_neighborhood.py,sha256=gk5FmoI7ANEczUtNXYRxc48KzkfYzemwS_eYaLq4_NI,2093
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+ tests/test_preprocessing.py,sha256=FI-Wk-kc4wWmOQg_NLCUIZC1oti396wr5cC-BauBai0,1436
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+ tests/test_segmentation.py,sha256=_HB8CCq-Ci6amf0xAmDIUuwtBUU_EGpgqLvcvSHrGug,3427
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+ tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
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+ tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
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+ tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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+ celldetective-1.2.2.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ celldetective-1.2.2.dist-info/METADATA,sha256=yBHxQ0wF0j9HE_EVb39sby8wF4-AflSJ79UzC8TIYtE,12833
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+ celldetective-1.2.2.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
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+ celldetective-1.2.2.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
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+ celldetective-1.2.2.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
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+ celldetective-1.2.2.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (72.1.0)
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+ Generator: setuptools (75.1.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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@@ -1,88 +0,0 @@
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- celldetective/__init__.py,sha256=PH25g2_AZt7N5Jg1KB3YT9wFvfMr9lIb2WxYzmDqlX4,105
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- celldetective/__main__.py,sha256=TQzL_FLAeEF1YIyRZXMiai40xXy21roPPV23ig4jwG0,14494
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- celldetective/events.py,sha256=s2pWnR3Z1fcB15sET5WsF2Pi6v6qv16hks_m3WiklNs,3658
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- celldetective/extra_properties.py,sha256=8DkxTvVs7gASsnnGurVZ3_zt6uR0pvvJhBKO2LC6hGk,5118
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- celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
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- celldetective/io.py,sha256=Y6YJQr4rmQYH3wrBGD9IfHJKqH_AbsJ8Qg99b9c2KuY,86058
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- celldetective/measure.py,sha256=kTKoGeCEYvACOf-pg11NPfyByogBMIC91lIZA-qZk1E,41344
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- celldetective/neighborhood.py,sha256=2SV0upNfaScp1Gg9JBiDho3AozyTtC0_SXPyHmnm6Ok,52994
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- celldetective/preprocessing.py,sha256=TKOJTc5o4rSgXqtYeZz-0ox062dD494VMiie3L-9aV4,38305
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- celldetective/relative_measurements.py,sha256=WRTUewDZ7JKSjPZUZVQ5hUusevAYsFGHjkzCZ3yKHzg,25056
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- celldetective/segmentation.py,sha256=L2VJKmOewC1CNZPiWCO6yUfxt78u9k1NHPr2qTyTaBM,30458
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- celldetective/signals.py,sha256=tnqEBb0LkdUHqKQwnNBct7J5zQ_UWR8tVP70UFh22PQ,120176
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- celldetective/tracking.py,sha256=k5CtlLqH8WjTwAu7ELwBd9VUuiVPjaNxL5h07KKgjEQ,37860
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- celldetective/utils.py,sha256=C-hZnd09qvvdoTAwj-sw4e6Gq25QyY1mBR6Ydchwdv8,82442
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- celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
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- celldetective/gui/about.py,sha256=i-y54Opb10pKTVNUEcJC-D6Cbiqud2EJ3ZLayXqhdqc,1715
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- celldetective/gui/analyze_block.py,sha256=vF3ORldZBZHnXUHCj4PeI6KXJ3skY0qV28LxuazGdmk,25429
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- celldetective/gui/btrack_options.py,sha256=eQEf63yTUsPCN-d1LqgAMmUQpfv2FH85FqnOSaR-9Q8,35575
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- celldetective/gui/classifier_widget.py,sha256=cDMdg8XjT_YG08hmXqqJk2X_yLArkupBMvxkhEya1d8,17271
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- celldetective/gui/configure_new_exp.py,sha256=ANJ-Zn4sjBphtj_aoJu6m1PFEKyv9gxeh9XqS6xOGjk,18969
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- celldetective/gui/control_panel.py,sha256=LNWixLPyR3wHb-fq-RWdRir-E1R3eLkxi3uBTDsm0WM,19845
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