celldetective 1.2.0__py3-none-any.whl → 1.2.2__py3-none-any.whl

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Files changed (54) hide show
  1. celldetective/__main__.py +12 -5
  2. celldetective/events.py +28 -2
  3. celldetective/gui/about.py +0 -1
  4. celldetective/gui/analyze_block.py +3 -18
  5. celldetective/gui/btrack_options.py +126 -21
  6. celldetective/gui/classifier_widget.py +68 -107
  7. celldetective/gui/configure_new_exp.py +37 -4
  8. celldetective/gui/control_panel.py +14 -30
  9. celldetective/gui/generic_signal_plot.py +793 -0
  10. celldetective/gui/gui_utils.py +401 -226
  11. celldetective/gui/json_readers.py +0 -2
  12. celldetective/gui/layouts.py +269 -25
  13. celldetective/gui/measurement_options.py +14 -23
  14. celldetective/gui/neighborhood_options.py +6 -16
  15. celldetective/gui/plot_measurements.py +10 -23
  16. celldetective/gui/plot_signals_ui.py +53 -687
  17. celldetective/gui/process_block.py +320 -186
  18. celldetective/gui/retrain_segmentation_model_options.py +30 -47
  19. celldetective/gui/retrain_signal_model_options.py +5 -14
  20. celldetective/gui/seg_model_loader.py +129 -113
  21. celldetective/gui/signal_annotator.py +93 -103
  22. celldetective/gui/signal_annotator2.py +9 -13
  23. celldetective/gui/styles.py +32 -0
  24. celldetective/gui/survival_ui.py +49 -712
  25. celldetective/gui/tableUI.py +4 -39
  26. celldetective/gui/thresholds_gui.py +38 -11
  27. celldetective/gui/viewers.py +6 -7
  28. celldetective/io.py +62 -84
  29. celldetective/measure.py +374 -15
  30. celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json +130 -0
  31. celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal +0 -0
  32. celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json +37 -0
  33. celldetective/neighborhood.py +3 -7
  34. celldetective/preprocessing.py +2 -4
  35. celldetective/relative_measurements.py +0 -3
  36. celldetective/scripts/analyze_signals.py +0 -1
  37. celldetective/scripts/measure_cells.py +1 -3
  38. celldetective/scripts/measure_relative.py +1 -2
  39. celldetective/scripts/segment_cells.py +16 -12
  40. celldetective/scripts/segment_cells_thresholds.py +17 -10
  41. celldetective/scripts/track_cells.py +18 -18
  42. celldetective/scripts/train_segmentation_model.py +1 -2
  43. celldetective/scripts/train_signal_model.py +0 -3
  44. celldetective/segmentation.py +1 -1
  45. celldetective/signals.py +20 -8
  46. celldetective/tracking.py +2 -1
  47. celldetective/utils.py +126 -18
  48. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/METADATA +19 -12
  49. celldetective-1.2.2.dist-info/RECORD +92 -0
  50. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/WHEEL +1 -1
  51. celldetective-1.2.0.dist-info/RECORD +0 -88
  52. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/LICENSE +0 -0
  53. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/entry_points.txt +0 -0
  54. {celldetective-1.2.0.dist-info → celldetective-1.2.2.dist-info}/top_level.txt +0 -0
celldetective/gui/styles.py CHANGED
@@ -1,3 +1,7 @@
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+ from celldetective.utils import get_software_location
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+ from PyQt5.QtGui import QIcon
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+ import os
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+
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  class Styles(object):
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  def __init__(self):
@@ -6,7 +10,11 @@ class Styles(object):
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  self.init_tab_styles()
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  self.init_label_styles()
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+ self.help_color = "#1958b7"
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+
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+
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  self.celldetective_blue = "#1565c0"
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+ self.celldetective_icon = QIcon(os.sep.join([get_software_location(),'celldetective','icons','logo.png']))
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  self.action_lbl_style_sheet = """
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  font-size: 10px;
@@ -65,6 +73,30 @@ class Styles(object):
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  '''
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+ self.button_style_sheet_5 = '''
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+ QPushButton {
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+ background-color: transparent;
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+ border: 3px solid #1565c0;
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+ color: #000000;
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+ border-radius: 15px;
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+ padding: 7px;
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+ font-size: 12px;
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+ }
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+ QPushButton:hover {
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+ background-color: #ecf0f1;
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+ }
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+ QPushButton:pressed {
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+ background-color: #ff8a00;
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+ }
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+
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+ QPushButton:disabled {
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+ border: 3px solid rgba(21, 101, 192, 0.50);
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+ color: rgba(21, 101, 192, 0.50);
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+ }
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+
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+ '''
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+
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+
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  self.button_style_sheet_2_not_done = '''
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  QPushButton {
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  background-color: transparent;