celldetective 1.1.1.post4__py3-none-any.whl → 1.2.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. celldetective/__init__.py +2 -1
  2. celldetective/extra_properties.py +62 -34
  3. celldetective/gui/__init__.py +1 -0
  4. celldetective/gui/analyze_block.py +2 -1
  5. celldetective/gui/classifier_widget.py +15 -9
  6. celldetective/gui/control_panel.py +50 -6
  7. celldetective/gui/layouts.py +5 -4
  8. celldetective/gui/neighborhood_options.py +13 -9
  9. celldetective/gui/plot_signals_ui.py +39 -11
  10. celldetective/gui/process_block.py +413 -95
  11. celldetective/gui/retrain_segmentation_model_options.py +17 -4
  12. celldetective/gui/retrain_signal_model_options.py +106 -6
  13. celldetective/gui/signal_annotator.py +29 -9
  14. celldetective/gui/signal_annotator2.py +2708 -0
  15. celldetective/gui/signal_annotator_options.py +3 -1
  16. celldetective/gui/survival_ui.py +15 -6
  17. celldetective/gui/tableUI.py +222 -60
  18. celldetective/io.py +536 -420
  19. celldetective/measure.py +919 -969
  20. celldetective/models/pair_signal_detection/blank +0 -0
  21. celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json +130 -0
  22. celldetective/models/segmentation_effectors/ricm-bimodal/ricm-bimodal +0 -0
  23. celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json +37 -0
  24. celldetective/neighborhood.py +428 -354
  25. celldetective/relative_measurements.py +648 -0
  26. celldetective/scripts/analyze_signals.py +1 -1
  27. celldetective/scripts/measure_cells.py +28 -8
  28. celldetective/scripts/measure_relative.py +103 -0
  29. celldetective/scripts/segment_cells.py +5 -5
  30. celldetective/scripts/track_cells.py +4 -1
  31. celldetective/scripts/train_segmentation_model.py +23 -18
  32. celldetective/scripts/train_signal_model.py +33 -0
  33. celldetective/signals.py +405 -8
  34. celldetective/tracking.py +8 -2
  35. celldetective/utils.py +178 -17
  36. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/METADATA +8 -8
  37. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/RECORD +41 -34
  38. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/WHEEL +1 -1
  39. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/LICENSE +0 -0
  40. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/entry_points.txt +0 -0
  41. {celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/top_level.txt +0 -0
celldetective/models/pair_signal_detection/blank ADDED
File without changes
celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json ADDED
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+ "model_type": "cellpose",
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+ "spatial_calibration": 0.2,
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+ "dataset": {
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+ "train": [
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+ }
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+ }
celldetective/models/segmentation_effectors/ricm-bimodal/training_instructions.json ADDED
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