celldetective 1.1.1.post4__py3-none-any.whl → 1.2.1__py3-none-any.whl

celldetective/utils.py

@@ -24,7 +24,84 @@ import shutil
 import tempfile
 from scipy.interpolate import griddata
 import re
+from scipy.ndimage.morphology import distance_transform_edt
+from scipy import ndimage
+from skimage.morphology import disk
 
+def contour_of_instance_segmentation(label, distance):
+
+	"""
+
+	Generate an instance mask containing the contour of the segmented objects.
+
+	Parameters
+	----------
+	label : ndarray
+		The instance segmentation labels.
+	distance : int, float, list, or tuple
+		The distance or range of distances from the edge of each instance to include in the contour.
+		If a single value is provided, it represents the maximum distance. If a tuple or list is provided,
+		it represents the minimum and maximum distances.
+
+	Returns
+	-------
+	border_label : ndarray
+		An instance mask containing the contour of the segmented objects.
+
+	Notes
+	-----
+	This function generates an instance mask representing the contour of the segmented instances in the label image.
+	It use the distance_transform_edt function from the scipy.ndimage module to compute the Euclidean distance transform.
+	The contour is defined based on the specified distance(s) from the edge of each instance.
+	The resulting mask, `border_label`, contains the contour regions, while the interior regions are set to zero.
+
+	Examples
+	--------
+	>>> border_label = contour_of_instance_segmentation(label, distance=3)
+	# Generate a binary mask containing the contour of the segmented instances with a maximum distance of 3 pixels.
+
+	"""
+	if isinstance(distance,(list,tuple)) or distance >= 0 :
+
+		edt = distance_transform_edt(label)
+
+		if isinstance(distance, list) or isinstance(distance, tuple):
+			min_distance = distance[0]; max_distance = distance[1]
+
+		elif isinstance(distance, (int, float)):
+			min_distance = 0
+			max_distance = distance
+
+		thresholded = (edt <= max_distance) * (edt > min_distance)
+		border_label = np.copy(label)
+		border_label[np.where(thresholded == 0)] = 0
+
+	else:
+		size = (2*abs(int(distance))+1, 2*abs(int(distance))+1)
+		dilated_image = ndimage.grey_dilation(label, footprint=disk(int(abs(distance)))) #size=size,
+		border_label=np.copy(dilated_image)
+		matching_cells = np.logical_and(dilated_image != 0, label == dilated_image)
+		border_label[np.where(matching_cells == True)] = 0
+		border_label[label!=0] = 0.
+
+	return border_label
+
+def extract_identity_col(trajectories):
+
+	if 'TRACK_ID' in list(trajectories.columns):
+		if not np.all(trajectories['TRACK_ID'].isnull()):
+			id_col = 'TRACK_ID'
+		else:
+			if 'ID' in list(trajectories.columns):
+				id_col = 'ID'
+	elif 'ID' in list(trajectories.columns):
+		
+		id_col = 'ID'
+	else:
+		print('ID or TRACK ID column could not be found in the table...')
+		id_col = None
+
+	return id_col
 
 def derivative(x, timeline, window, mode='bi'):
 	
@@ -590,6 +667,22 @@ def rename_intensity_column(df, channels):
 						else:
 							new_name = new_name.replace('centre_of_mass', "centre_of_mass_orientation")
 						to_rename.update({intensity_columns[k]: new_name.replace('-', '_')})
+					elif sections[-2] == "2":
+						new_name = np.delete(measure, -1)
+						new_name = '_'.join(list(new_name))
+						if 'edge' in intensity_columns[k]:
+							new_name = new_name.replace('centre_of_mass_displacement', "edge_centre_of_mass_x")
+						else:
+							new_name = new_name.replace('centre_of_mass', "centre_of_mass_x")
+						to_rename.update({intensity_columns[k]: new_name.replace('-', '_')})
+					elif sections[-2] == "3":
+						new_name = np.delete(measure, -1)
+						new_name = '_'.join(list(new_name))
+						if 'edge' in intensity_columns[k]:
+							new_name = new_name.replace('centre_of_mass_displacement', "edge_centre_of_mass_y")
+						else:
+							new_name = new_name.replace('centre_of_mass', "centre_of_mass_y")
+						to_rename.update({intensity_columns[k]: new_name.replace('-', '_')})
 				if 'radial_gradient' in intensity_columns[k]:
 					# sections = np.array(re.split('-|_', intensity_columns[k]))
 					measure = np.array(re.split('-|_', new_name))
@@ -1196,16 +1289,27 @@ def _extract_channel_indices_from_config(config, channels_to_extract):
 	# V2
 	channels = []
 	for c in channels_to_extract:
-		if c!='None' and c is not None:
-			try:
-				c1 = int(ConfigSectionMap(config,"Channels")[c])
-				channels.append(c1)
-			except Exception as e:
-				print(f"Error {e}. The channel required by the model is not available in your data... Check the configuration file.")
-				channels = None
-				break
-		else:
+		try:
+			c1 = int(ConfigSectionMap(config,"Channels")[c])
+			channels.append(c1)
+		except Exception as e:
+			print(f"Warning... The channel {c} required by the model is not available in your data...")
 			channels.append(None)
+	if np.all([c is None for c in channels]):
+		channels = None
+
+	# channels = []
+	# for c in channels_to_extract:
+	# 	if c!='None' and c is not None:
+	# 		try:
+	# 			c1 = int(ConfigSectionMap(config,"Channels")[c])
+	# 			channels.append(c1)
+	# 		except Exception as e:
+	# 			print(f"Error {e}. The channel required by the model is not available in your data... Check the configuration file.")
+	# 			channels = None
+	# 			break
+	# 	else:
+	# 		channels.append(None)
 
 	# LEGACY
 	if channels is None:
@@ -2071,6 +2175,8 @@ def load_image_dataset(datasets, channels, train_spatial_calibration=None, mask_
 	- Spatial calibration adjustment involves rescaling the images and masks to match the `train_spatial_calibration`.
 	- Only images with a corresponding mask and a valid configuration file specifying channel indices and
 	  spatial calibration are loaded.
+	- The image samples must have at least one channel in common with the required channels to be accepted. The missing
+	  channels are passed as black frames.
 
 	Examples
 	--------
@@ -2109,24 +2215,29 @@ def load_image_dataset(datasets, channels, train_spatial_calibration=None, mask_
 					# Load config
 					with open(config_path, 'r') as f:
 						config = json.load(f)
-					try:
+
+					existing_channels = config['channels']
+					intersection = list(set(list(channels)) & set(list(existing_channels)))
+					print(f'{existing_channels=} {intersection=}')
+					if len(intersection)==0:
+						print(e,' channels could not be found in the config... Skipping image.')
+						continue
+					else:
 						ch_idx = []
 						for c in channels:
-							if c!='None':
-								idx = config['channels'].index(c)
+							if c in existing_channels:
+								idx = existing_channels.index(c)
 								ch_idx.append(idx)
 							else:
+								# For None or missing channel pass black frame
 								ch_idx.append(np.nan)
 						im_calib = config['spatial_calibration']
-					except Exception as e:
-						print(e,' channels and/or spatial calibration could not be found in the config... Skipping image.')
-						continue
 				
 				ch_idx = np.array(ch_idx)
 				ch_idx_safe = np.copy(ch_idx)
 				ch_idx_safe[ch_idx_safe!=ch_idx_safe] = 0
 				ch_idx_safe = ch_idx_safe.astype(int)
-				print(ch_idx_safe)
+				
 				image = image[ch_idx_safe]
 				image[np.where(ch_idx!=ch_idx)[0],:,:] = 0
 
@@ -2140,6 +2251,14 @@ def load_image_dataset(datasets, channels, train_spatial_calibration=None, mask_
 					
 			X.append(image)
 			Y.append(mask)
+
+			# fig,ax = plt.subplots(1,image.shape[-1]+1)
+			# for k in range(image.shape[-1]):
+			# 	ax[k].imshow(image[:,:,k],cmap='gray')
+			# ax[image.shape[-1]].imshow(mask)
+			# plt.pause(1)
+			# plt.close()
+
 			files.append(im)
 
 	assert len(X)==len(Y),'The number of images does not match with the number of masks... Abort.'
@@ -2274,4 +2393,46 @@ def interpolate_nan(img, method='nearest'):
 		interp_grid = griddata(points, values, (x_grid, y_grid), method=method)
 		return interp_grid
 	else:
-		return img
+		return img
+
+def collapse_trajectories_by_status(df, status=None, projection='mean', population='effectors', groupby_columns=['position','TRACK_ID']):
+	
+	static_columns = ['well_index', 'well_name', 'pos_name', 'position', 'well', 'status', 't0', 'class','cell_type','concentration', 'antibody', 'pharmaceutical_agent','TRACK_ID','position', 'neighbor_population', 'reference_population', 'NEIGHBOR_ID', 'REFERENCE_ID', 'FRAME']
+
+	if status is None or status not in list(df.columns):
+		print('invalid status selection...')
+		return None
+
+	df = df.dropna(subset=status,ignore_index=True)
+	unique_statuses = np.unique(df[status].to_numpy())
+
+	df_sections = []
+	for s in unique_statuses:
+		subtab = df.loc[df[status]==s,:]
+		op = getattr(subtab.groupby(groupby_columns), projection)
+		subtab_projected = op(subtab.groupby(groupby_columns))
+		frame_duration = subtab.groupby(groupby_columns).size().to_numpy()
+		for c in static_columns:
+			try:
+				subtab_projected[c] = subtab.groupby(groupby_columns)[c].apply(lambda x: x.unique()[0])
+			except Exception as e:
+				print(e)
+				pass
+		subtab_projected['duration_in_state'] = frame_duration
+		df_sections.append(subtab_projected)
+
+	group_table = pd.concat(df_sections,axis=0,ignore_index=True)
+	if population=='pairs':
+		for col in ['duration_in_state',status, 'neighbor_population', 'reference_population', 'NEIGHBOR_ID', 'REFERENCE_ID']:
+			first_column = group_table.pop(col) 
+			group_table.insert(0, col, first_column)				
+	else:
+		for col in ['duration_in_state',status,'TRACK_ID']:
+			first_column = group_table.pop(col) 
+			group_table.insert(0, col, first_column)
+
+	group_table.pop('FRAME')
+	group_table = group_table.sort_values(by=groupby_columns + [status],ignore_index=True)
+	group_table = group_table.reset_index(drop=True)
+
+	return group_table

{celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: celldetective
-Version: 1.1.1.post4
+Version: 1.2.1
 Summary: description
 Home-page: http://github.com/remyeltorro/celldetective
 Author: Rémy Torro
@@ -12,14 +12,14 @@ Requires-Dist: wheel
 Requires-Dist: nbsphinx
 Requires-Dist: nbsphinx-link
 Requires-Dist: sphinx-rtd-theme
-Requires-Dist: sphinx ==5.0.2
-Requires-Dist: jinja2 <3.1
+Requires-Dist: sphinx==5.0.2
+Requires-Dist: jinja2<3.1
 Requires-Dist: ipykernel
 Requires-Dist: stardist
-Requires-Dist: cellpose <3
+Requires-Dist: cellpose<3
 Requires-Dist: scikit-learn
 Requires-Dist: btrack
-Requires-Dist: tensorflow <=2.12.1
+Requires-Dist: tensorflow<=2.12.1
 Requires-Dist: napari
 Requires-Dist: tqdm
 Requires-Dist: mahotas
@@ -29,11 +29,11 @@ Requires-Dist: lifelines
 Requires-Dist: setuptools
 Requires-Dist: scipy
 Requires-Dist: seaborn
-Requires-Dist: opencv-python-headless ==4.7.0.72
+Requires-Dist: opencv-python-headless==4.7.0.72
 Requires-Dist: liblapack
 Requires-Dist: gputools
-Requires-Dist: lmfit ~=1.2.2
-Requires-Dist: superqt[cmap] >=0.6.1
+Requires-Dist: lmfit~=1.2.2
+Requires-Dist: superqt[cmap]>=0.6.1
 Requires-Dist: matplotlib-scalebar
 
 # Celldetective

{celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/RECORD

@@ -1,41 +1,43 @@
-celldetective/__init__.py,sha256=FEZpJKcskBH2IginYzeqPWoR1lVGuyYCXhv7Hnlkoo8,49
+celldetective/__init__.py,sha256=PH25g2_AZt7N5Jg1KB3YT9wFvfMr9lIb2WxYzmDqlX4,105
 celldetective/__main__.py,sha256=TQzL_FLAeEF1YIyRZXMiai40xXy21roPPV23ig4jwG0,14494
 celldetective/events.py,sha256=s2pWnR3Z1fcB15sET5WsF2Pi6v6qv16hks_m3WiklNs,3658
-celldetective/extra_properties.py,sha256=ZdWV046RR8jrQPYxLSVVb1cXkWYxfrrLj2tXfc358cU,4179
+celldetective/extra_properties.py,sha256=8DkxTvVs7gASsnnGurVZ3_zt6uR0pvvJhBKO2LC6hGk,5118
 celldetective/filters.py,sha256=b0qKwHor1fvNA_dHovP17nQz8EsW5YlyhT2TJnayn08,3615
-celldetective/io.py,sha256=_ivq2zE5ffHadZ-YOWSSX5J1GTlEohg6WPvC3xEBZvQ,82819
-celldetective/measure.py,sha256=HDQZfSRx3daOCV5Snu1paYU5JYkwu8engO2qZqhTAUo,48089
-celldetective/neighborhood.py,sha256=Jl9VujKYZ9R2pcqmPt5HyeCy5LieNal-oCsD8b7uIWQ,51182
+celldetective/io.py,sha256=28rN_spEv-kV3teTxCdz4qUygcbAs7S6wJ24wumwreU,86023
+celldetective/measure.py,sha256=kTKoGeCEYvACOf-pg11NPfyByogBMIC91lIZA-qZk1E,41344
+celldetective/neighborhood.py,sha256=u8VfR1Olo20zVcB0y2hzjZOCfXV1u2C5SDJTlWJ2J64,53042
 celldetective/preprocessing.py,sha256=TKOJTc5o4rSgXqtYeZz-0ox062dD494VMiie3L-9aV4,38305
+celldetective/relative_measurements.py,sha256=WRTUewDZ7JKSjPZUZVQ5hUusevAYsFGHjkzCZ3yKHzg,25056
 celldetective/segmentation.py,sha256=L2VJKmOewC1CNZPiWCO6yUfxt78u9k1NHPr2qTyTaBM,30458
-celldetective/signals.py,sha256=P7eiDZGGIAYCFBKjGCBi8gMBvJYywxlxZNzyGgw-26Y,102783
-celldetective/tracking.py,sha256=A0mhdF4uq4m8OX1-rhtuhG69rlh_6Pb34Aebu7hIeKM,37601
-celldetective/utils.py,sha256=ahHZkLr6ceUDY5sN6uOcGzqKaLjpOIdB_kjhXj_gggA,79003
+celldetective/signals.py,sha256=ec955qS7DfjePXeynNXCI6RQz0zpi3818-CBTwcDFDI,120428
+celldetective/tracking.py,sha256=k5CtlLqH8WjTwAu7ELwBd9VUuiVPjaNxL5h07KKgjEQ,37860
+celldetective/utils.py,sha256=CqGgzcSdVl0V11v3tSrlXsDbWP2x4JbPM9LzRLNvU9w,85157
 celldetective/datasets/segmentation_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/datasets/signal_annotations/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-celldetective/gui/__init__.py,sha256=y2dvrUdJi17QMgPjl8WN3XFHYzJpu2ul4_8y7MQV1Bk,941
+celldetective/gui/__init__.py,sha256=2_r2xfOj4_2xj0yBkCTIfzlF94AHKm-j6Pvpd7DddQc,989
 celldetective/gui/about.py,sha256=i-y54Opb10pKTVNUEcJC-D6Cbiqud2EJ3ZLayXqhdqc,1715
-celldetective/gui/analyze_block.py,sha256=WD3JQQylx_dVozFCvNqrOyR6LcNHV7R1_gGh7XqOVeI,25423
+celldetective/gui/analyze_block.py,sha256=vF3ORldZBZHnXUHCj4PeI6KXJ3skY0qV28LxuazGdmk,25429
 celldetective/gui/btrack_options.py,sha256=eQEf63yTUsPCN-d1LqgAMmUQpfv2FH85FqnOSaR-9Q8,35575
-celldetective/gui/classifier_widget.py,sha256=PNg72YlFvKjGdlARaquvY4ALpNV7KZps9LJqAemSUqc,17225
+celldetective/gui/classifier_widget.py,sha256=yS0yqCH_i8eJNDraoTNPjjJJu9wFYJbpr0FXCJJAnfU,17566
 celldetective/gui/configure_new_exp.py,sha256=ANJ-Zn4sjBphtj_aoJu6m1PFEKyv9gxeh9XqS6xOGjk,18969
-celldetective/gui/control_panel.py,sha256=srpQMxMA8ZOuxqfzRgFZl0OtV1H9bgf2nt20A7vtFps,18101
+celldetective/gui/control_panel.py,sha256=LNWixLPyR3wHb-fq-RWdRir-E1R3eLkxi3uBTDsm0WM,19845
 celldetective/gui/gui_utils.py,sha256=PidFfdc8XASeIzZO5pfKgwqe4vROG7-KpYMcBZ42jdw,22673
 celldetective/gui/json_readers.py,sha256=fTrNrlxv9NCae8ZJexBEHxI3yCLRqt6F0Yo1OeDycfA,3686
-celldetective/gui/layouts.py,sha256=MCmGOjZFoL2a24Gu6WH9UgOnI6ZbGNqWxEEf1QMVqqQ,37678
+celldetective/gui/layouts.py,sha256=Qrs_5ugNaLWy6l72zzPegrV8idfNWEnNNA2ltH1DC_M,37768
 celldetective/gui/measurement_options.py,sha256=i0CdAfupHJAqhOT7RsufEK919sAzQnFBkQO4IAMYZL0,47704
-celldetective/gui/neighborhood_options.py,sha256=sASKSSRl4Fwu0NwLaH-xX0SCvGRiyRA5JuNA288lP8o,20436
+celldetective/gui/neighborhood_options.py,sha256=cWCu3dP0jdC6RHOrotTeH8E07F2mJyzQZQYN374g_z4,20550
 celldetective/gui/plot_measurements.py,sha256=xUoGxV6uXcen-t4yWtAmcGTUayICI-FxTVKPrWMNlfg,51799
-celldetective/gui/plot_signals_ui.py,sha256=TwWU2u3_mkRNsM8er0kI_kwr5EoZ29YEzlr0cQzyW4A,43732
-celldetective/gui/process_block.py,sha256=7n9glZ1ojEi1bObqwIj4giNhrteT69X1EPMQ1hK63aU,53565
-celldetective/gui/retrain_segmentation_model_options.py,sha256=VixtKZTjoJFJy8X6aDbAf0zgK46aXj3I6oPP_92yqhA,22457
-celldetective/gui/retrain_signal_model_options.py,sha256=gdK1ITuaTPNvnQWXYuUBcP_pH5cvaEEns5XejjTi_Eo,17854
+celldetective/gui/plot_signals_ui.py,sha256=96iMud47aDGErVht_kQdUS9f0uQAIYeAg3OaGk4XBVw,44551
+celldetective/gui/process_block.py,sha256=oT0bmZqqOjSZvdthqBKoy9MejButRrqdmZQRnUWfJy8,67366
+celldetective/gui/retrain_segmentation_model_options.py,sha256=8mZpW5fb5ts6HjKPzRpG0_tIOQgtsQth_h7ruLdKVss,22954
+celldetective/gui/retrain_signal_model_options.py,sha256=6OqiulBk4Rn709jyENl5rHKpOHJoUsEzslxSxhRugHw,22478
 celldetective/gui/seg_model_loader.py,sha256=uKp8oab-4QdTGqb-tb6bOD-FLD_154GOvgWFYz97BwY,17350
-celldetective/gui/signal_annotator.py,sha256=yHsVCu6Nm8_7bxXfvBfx-xymH9bXBpnQ4TUih1d66cM,86791
-celldetective/gui/signal_annotator_options.py,sha256=-Q7f8eCwniqbgLJqMCa91Wc-V3VHAZidwt7LPd4Z5yU,10879
+celldetective/gui/signal_annotator.py,sha256=ArcLcFBH-FZaTqGVSGhir4f-UIor7POot9_Ht-oWRxk,87539
+celldetective/gui/signal_annotator2.py,sha256=pO8kIJqvpueOGRWfqFks9bub0CtuxHfTl794Wj_VYw8,109622
+celldetective/gui/signal_annotator_options.py,sha256=ztFFgA70SJ0QkntxYGsgDNCvSuSR5GjF7_J6pYVYc1g,11020
 celldetective/gui/styles.py,sha256=Vw4wr6MQ4iBwhOY-ZWAxFDZZ3CNohmEnuPPazwhJaho,4129
-celldetective/gui/survival_ui.py,sha256=2JGLC5m6D_gVLwnBAM7uEvuCKw1Cli8nM9i5s7TIpGg,33612
-celldetective/gui/tableUI.py,sha256=jkvXkLv2GLimApClvwtwAgpYJi8cpLKBM7MEBdbejbE,34572
+celldetective/gui/survival_ui.py,sha256=sWY5rsxLaNHgfUCB0fphBM2c8J4LLY9q5cdSxF1aq1Q,33792
+celldetective/gui/tableUI.py,sha256=Tgq7fr1eSuVpGbuUlg0qTp3rFXP_zNGdbMZGI3Yq3kI,40636
 celldetective/gui/thresholds_gui.py,sha256=b8SkG4DlfxBRjacKTe1NSNkq7rJm8lnSLifH-mg846k,49529
 celldetective/gui/viewers.py,sha256=buBholjAieaVVb6YinVhxPshEHxBEU3er_N0UrkwAew,27734
 celldetective/icons/logo-large.png,sha256=FXSwV3u6zEKcfpuSn4unnqB0oUnN9cHqQ9BCKWytrpg,36631
@@ -48,23 +50,28 @@ celldetective/icons/survival2.png,sha256=8zsualD7d9VPAecoFA4Om9TFARErqpJzMg6U7XA
 celldetective/icons/vignette_signals2.png,sha256=hsVOdQDpEfMGM45aaSeacEm3lvxbquRKKYutiS9qoS0,20743
 celldetective/icons/vignette_signals2.svg,sha256=muGNcQudV1jG-bmFd9FwV-Wb8PcrRV5osdZ7pHR7Ekk,5947
 celldetective/links/zenodo.json,sha256=7WKRuZY7MHTR-IChWBbU0i47H_479NtlxsCGaJn9-xM,22728
+celldetective/models/pair_signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/models/segmentation_effectors/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/models/segmentation_effectors/primNK_cfse/config_input.json,sha256=gwEGP5wc6iVcwLrR5IbEb-9lTbdQuPyLLFYXh00374U,509
 celldetective/models/segmentation_effectors/primNK_cfse/cp-cfse-transfer,sha256=ps4BAzGxr2i2R0uBGJqfF9wjg5bIeSeBGQb0YcUChhY,26559970
 celldetective/models/segmentation_effectors/primNK_cfse/training_instructions.json,sha256=DqEO4_oQuQmJkZiefREXz8ts60svoqxIQB-LMScuCnc,909
+celldetective/models/segmentation_effectors/ricm-bimodal/config_input.json,sha256=4KUHF-DAHcJgJf9wiGEd880qxRMRKCkiFjDi0PE7Dvg,10579
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 celldetective/models/segmentation_generic/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/models/segmentation_targets/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/models/signal_detection/blank,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 celldetective/models/tracking_configs/mcf7.json,sha256=iDjb8i6yxs0GleW39dvY3Ld5bZJatlXJrwI8PG3vCT0,1780
 celldetective/models/tracking_configs/ricm.json,sha256=L-vmwCR1f89U-qnH2Ms0cBfPFR_dxIWoe2ccH8V-QBA,2727
 celldetective/models/tracking_configs/ricm2.json,sha256=DDjJ6ScYcDWvlsy7ujPID8v8H28vcNcMuZmNR8XmGxo,2718
-celldetective/scripts/analyze_signals.py,sha256=23TXGNw-j5xT3ss4mXlnKdBgFLnQ50JUEQOC6_H7Q_0,2203
-celldetective/scripts/measure_cells.py,sha256=4uRG6Dg0WsO-N8ZaBJ4loWOvX6FdHaCblIFXq6Dtirc,11000
-celldetective/scripts/segment_cells.py,sha256=55hM3JbMoW5TB43uENgtvADL8BziI17B3GjG4axsj6s,8291
+celldetective/scripts/analyze_signals.py,sha256=c_vdd6Z0yAcuNAQJioVH5k6WmOnQBuvRqdWkn6fnCjg,2204
+celldetective/scripts/measure_cells.py,sha256=ex9fOcc8CP7RTVBbSyNHX5yHozhhl1XhTmHJXvtIr1Y,11870
+celldetective/scripts/measure_relative.py,sha256=lGW3zxtXcr4jEPMMkhLbc--OE6vE5GGlLnxa9ma7yfY,4296
+celldetective/scripts/segment_cells.py,sha256=YtTVPjaaLuIqBaV3hlpa__fMeDB3trTPOFJRfEl0jQs,8231
 celldetective/scripts/segment_cells_thresholds.py,sha256=GbWXa6xoO8s4PinJPZIxAuosw4vpzyJ7FiFYpSURojk,4998
-celldetective/scripts/track_cells.py,sha256=AaNiYEW4osYKKR2kbdVLOUnQEBbcZIA-D0mkhcxPWTY,7985
-celldetective/scripts/train_segmentation_model.py,sha256=rw5LD70PrE_SCBvaFt0ri1uSa-YI5DM5exH_BGVlw5Y,8515
-celldetective/scripts/train_signal_model.py,sha256=9-dmPCLKJ9ypjsV9AwFd-Sb6B6YaHS0QGT218H5hUPo,1861
+celldetective/scripts/track_cells.py,sha256=qATUotwsFrINe_uBMGlcCZbFU0iT1J9K8bEZ3TVouIg,8173
+celldetective/scripts/train_segmentation_model.py,sha256=Fm-46uhn5zd_1iwRiunBq_ziqiO4Fv-bzS5OgS0B_2c,9284
+celldetective/scripts/train_signal_model.py,sha256=LNLIViFEMzyDZvbdfU2L1p90uu2Bha5FLH2qCKSX424,3234
 tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tests/test_events.py,sha256=eLFwwEEJfQAdwhews3-fn1HSvzozcNNFN_Qn0gOvQkE,685
 tests/test_filters.py,sha256=iJksl_HgquqGzPPv46qpNtlD4rkBpZ5eVtIotgZ7LDs,656
@@ -76,9 +83,9 @@ tests/test_segmentation.py,sha256=_HB8CCq-Ci6amf0xAmDIUuwtBUU_EGpgqLvcvSHrGug,34
 tests/test_signals.py,sha256=No4cah6KxplhDcKXnU8RrA7eDla4hWw6ccf7xGnBokU,3599
 tests/test_tracking.py,sha256=8hebWSqEIuttD1ABn-6dKCT7EXKRR7-4RwyFWi1WPFo,8800
 tests/test_utils.py,sha256=NKRCAC1d89aBK5cWjTb7-pInYow901RrT-uBlIdz4KI,3692
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-celldetective-1.1.1.post4.dist-info/METADATA,sha256=hN7LbHEXIAV9Saz6XZZIxWnhbVQmvbJ9QRFwJ00PHLo,12418
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-celldetective-1.1.1.post4.dist-info/entry_points.txt,sha256=2NU6_EOByvPxqBbCvjwxlVlvnQreqZ3BKRCVIKEv3dg,62
-celldetective-1.1.1.post4.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
-celldetective-1.1.1.post4.dist-info/RECORD,,
+celldetective-1.2.1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+celldetective-1.2.1.dist-info/METADATA,sha256=cjQ13u8SwSQ5ayCkYTkj_TbXTPpqky7HB1eMdx37KIA,12405
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+celldetective-1.2.1.dist-info/top_level.txt,sha256=6rsIKKfGMKgud7HPuATcpq6EhdXwcg_yknBVWn9x4C4,20
+celldetective-1.2.1.dist-info/RECORD,,

{celldetective-1.1.1.post4.dist-info → celldetective-1.2.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (70.3.0)
+Generator: setuptools (73.0.1)
 Root-Is-Purelib: true
 Tag: py3-none-any