celldetective 1.0.2__py3-none-any.whl

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Files changed (66) hide show
  1. celldetective/__init__.py +2 -0
  2. celldetective/__main__.py +432 -0
  3. celldetective/datasets/segmentation_annotations/blank +0 -0
  4. celldetective/datasets/signal_annotations/blank +0 -0
  5. celldetective/events.py +149 -0
  6. celldetective/extra_properties.py +100 -0
  7. celldetective/filters.py +89 -0
  8. celldetective/gui/__init__.py +20 -0
  9. celldetective/gui/about.py +44 -0
  10. celldetective/gui/analyze_block.py +563 -0
  11. celldetective/gui/btrack_options.py +898 -0
  12. celldetective/gui/classifier_widget.py +386 -0
  13. celldetective/gui/configure_new_exp.py +532 -0
  14. celldetective/gui/control_panel.py +438 -0
  15. celldetective/gui/gui_utils.py +495 -0
  16. celldetective/gui/json_readers.py +113 -0
  17. celldetective/gui/measurement_options.py +1425 -0
  18. celldetective/gui/neighborhood_options.py +452 -0
  19. celldetective/gui/plot_signals_ui.py +1042 -0
  20. celldetective/gui/process_block.py +1055 -0
  21. celldetective/gui/retrain_segmentation_model_options.py +706 -0
  22. celldetective/gui/retrain_signal_model_options.py +643 -0
  23. celldetective/gui/seg_model_loader.py +460 -0
  24. celldetective/gui/signal_annotator.py +2388 -0
  25. celldetective/gui/signal_annotator_options.py +340 -0
  26. celldetective/gui/styles.py +217 -0
  27. celldetective/gui/survival_ui.py +903 -0
  28. celldetective/gui/tableUI.py +608 -0
  29. celldetective/gui/thresholds_gui.py +1300 -0
  30. celldetective/icons/logo-large.png +0 -0
  31. celldetective/icons/logo.png +0 -0
  32. celldetective/icons/signals_icon.png +0 -0
  33. celldetective/icons/splash-test.png +0 -0
  34. celldetective/icons/splash.png +0 -0
  35. celldetective/icons/splash0.png +0 -0
  36. celldetective/icons/survival2.png +0 -0
  37. celldetective/icons/vignette_signals2.png +0 -0
  38. celldetective/icons/vignette_signals2.svg +114 -0
  39. celldetective/io.py +2050 -0
  40. celldetective/links/zenodo.json +561 -0
  41. celldetective/measure.py +1258 -0
  42. celldetective/models/segmentation_effectors/blank +0 -0
  43. celldetective/models/segmentation_generic/blank +0 -0
  44. celldetective/models/segmentation_targets/blank +0 -0
  45. celldetective/models/signal_detection/blank +0 -0
  46. celldetective/models/tracking_configs/mcf7.json +68 -0
  47. celldetective/models/tracking_configs/ricm.json +203 -0
  48. celldetective/models/tracking_configs/ricm2.json +203 -0
  49. celldetective/neighborhood.py +717 -0
  50. celldetective/scripts/analyze_signals.py +51 -0
  51. celldetective/scripts/measure_cells.py +275 -0
  52. celldetective/scripts/segment_cells.py +212 -0
  53. celldetective/scripts/segment_cells_thresholds.py +140 -0
  54. celldetective/scripts/track_cells.py +206 -0
  55. celldetective/scripts/train_segmentation_model.py +246 -0
  56. celldetective/scripts/train_signal_model.py +49 -0
  57. celldetective/segmentation.py +712 -0
  58. celldetective/signals.py +2826 -0
  59. celldetective/tracking.py +974 -0
  60. celldetective/utils.py +1681 -0
  61. celldetective-1.0.2.dist-info/LICENSE +674 -0
  62. celldetective-1.0.2.dist-info/METADATA +192 -0
  63. celldetective-1.0.2.dist-info/RECORD +66 -0
  64. celldetective-1.0.2.dist-info/WHEEL +5 -0
  65. celldetective-1.0.2.dist-info/entry_points.txt +2 -0
  66. celldetective-1.0.2.dist-info/top_level.txt +1 -0
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