cars 1.0.0rc1__cp313-cp313-musllinux_1_2_i686.whl

cars/orchestrator/cluster/mp_cluster/mp_wrapper.py

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+#!/usr/bin/env python
+# coding: utf8
+#
+# Copyright (c) 2020 Centre National d'Etudes Spatiales (CNES).
+#
+# This file is part of CARS
+# (see https://github.com/CNES/cars).
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+"""
+Contains functions for wrapper disk
+"""
+
+# Standard imports
+import logging
+import os
+import pickle
+import shutil
+from abc import ABCMeta, abstractmethod
+from multiprocessing.pool import ThreadPool
+
+import pandas
+
+# Third party imports
+import xarray as xr
+
+# CARS imports
+from cars.core.utils import safe_makedirs
+from cars.data_structures import cars_dataset, cars_dict
+from cars.orchestrator.cluster.mp_cluster.mp_tools import replace_data
+
+# Third party imports
+
+
+DENSE_NAME = "DenseDO"
+SPARSE_NAME = "SparseDO"
+DICT_NAME = "DictDO"
+SHARED_NAME = "SharedDO"
+
+
+class AbstractWrapper(metaclass=ABCMeta):
+    """
+    AbstractWrapper
+    """
+
+    @abstractmethod
+    def get_obj(self, obj):
+        """
+        Get Object
+
+        :param obj: object to transform
+
+        :return: object
+        """
+
+    @abstractmethod
+    def get_function_and_kwargs(self, func, kwargs, nout=1):
+        """
+        Get function to apply and overloaded key arguments
+
+        :param func: function to run
+        :param kwargs: key arguments of func
+        :param nout: number of outputs
+
+        :return: function to apply, overloaded key arguments
+        """
+
+    @abstractmethod
+    def cleanup(self, **kwargs):
+        """
+        Cleanup tmp_dir
+        """
+
+    @abstractmethod
+    def cleanup_future_res(self, future_res):
+        """
+        Cleanup future result
+
+        :param future_res: future result to clean
+        """
+
+
+class WrapperNone(AbstractWrapper):
+    """
+    AbstractWrapper
+    """
+
+    def __init__(self, tmp_dir):
+        """
+        Init function of WrapperDisk
+        :param tmp_dir: temporary directory
+        """
+
+    def get_obj(self, obj):
+        """
+        Get Object
+
+        :param obj: object to transform
+
+        :return: object
+        """
+        return obj
+
+    def get_function_and_kwargs(self, func, kwargs, nout=1):
+        """
+        Get function to apply and overloaded key arguments
+
+        :param func: function to run
+        :param kwargs: key arguments of func
+        :param nout: number of outputs
+
+        :return: function to apply, overloaded key arguments
+        """
+
+        # apply disk wrapper
+        new_func = none_wrapper_fun
+
+        # Get overloaded key arguments
+
+        new_kwargs = kwargs
+        new_kwargs["fun"] = func
+
+        return new_func, kwargs
+
+    def cleanup(self, **kwargs):
+        """
+        Cleanup tmp_dir
+        """
+
+    def cleanup_future_res(self, future_res):
+        """
+        Cleanup future result
+
+        :param future_res: future result to clean
+        """
+        del future_res
+
+
+class WrapperDisk(AbstractWrapper):
+    """
+    WrapperDisk
+    """
+
+    def __init__(self, tmp_dir):
+        """
+        Init function of WrapperDisk
+        :param tmp_dir: temporary directory
+        """
+        # Directory for data passing from a wrapper to another
+        self.tmp_dir = os.path.join(tmp_dir, "tmp")
+        if not os.path.exists(self.tmp_dir):
+            os.makedirs(self.tmp_dir)
+
+        # Directory for data shared by multiple wrappers
+        self.shared_dir = os.path.join(tmp_dir, "shared")
+        if not os.path.exists(self.shared_dir):
+            os.makedirs(self.shared_dir)
+
+        self.current_object_id = 0
+
+        # Create a thead pool for removing data
+        self.removing_pool = ThreadPool(1)
+
+    def cleanup(self, keep_shared_dir=False):
+        """
+        Cleanup tmp_dir
+        :param keep_shared_dir: do not clean directory of shared objects
+        """
+
+        logging.info("Clean removing thread pool ...")
+        self.removing_pool.close()
+        self.removing_pool.join()
+
+        logging.info("Clean tmp directory ...")
+        removing_disk_data(self.tmp_dir)
+
+        if not keep_shared_dir:
+            logging.info("Clean shared directory ...")
+            removing_disk_data(self.shared_dir)
+
+    def cleanup_future_res(self, future_res):
+        """
+        Cleanup future result
+
+        :param future_res: future result to clean
+        """
+
+        if isinstance(future_res, tuple):
+            for future_res_i in future_res:
+                if is_dumped_object(future_res_i):
+                    self.removing_pool.apply_async(
+                        removing_disk_data, args=[future_res_i]
+                    )
+
+        else:
+            if is_dumped_object(future_res):
+                self.removing_pool.apply_async(
+                    removing_disk_data, args=[future_res]
+                )
+
+    def get_function_and_kwargs(self, func, kwargs, nout=1):
+        """
+        Get function to apply and overloaded key arguments
+
+        :param func: function to run
+        :param kwargs: key arguments of func
+        :param nout: number of outputs
+
+        :return: function to apply, overloaded key arguments
+        """
+
+        # apply disk wrapper
+        new_func = disk_wrapper_fun
+
+        # Get overloaded key arguments
+        # Create ids
+        id_list = []
+        for _ in range(nout):
+            id_list.append(self.current_object_id)
+            self.current_object_id += 1
+        new_kwargs = kwargs
+        new_kwargs["id_list"] = id_list
+        new_kwargs["fun"] = func
+        new_kwargs["tmp_dir"] = self.tmp_dir
+
+        return new_func, new_kwargs
+
+    def get_obj(self, obj):
+        """
+        Get Object
+
+        :param obj: object to transform
+
+        :return: object
+        """
+        res = load(obj)
+        return res
+
+    def scatter_obj(self, obj):
+        """
+        Distribute data through workers
+
+        :param obj: object to dump
+        """
+        directory = os.path.join(
+            self.shared_dir, SHARED_NAME + "_" + repr(self.current_object_id)
+        )
+        safe_makedirs(directory)
+        self.current_object_id += 1
+        path = os.path.join(directory, "obj")
+        with open(path, "wb") as handle:
+            pickle.dump(obj, handle, protocol=pickle.HIGHEST_PROTOCOL)
+        return path
+
+
+def removing_disk_data(path):
+    """
+    Remove directory from disk
+
+    :param path: path to delete
+    """
+    shutil.rmtree(path)
+
+
+def none_wrapper_fun(*argv, **kwargs):
+    """
+    Create a wrapper for functionn running it
+
+    :param argv: args of func
+    :param kwargs: kwargs of func
+
+    :return: path to results
+    """
+
+    func = kwargs["fun"]
+    kwargs.pop("fun")
+    return func(*argv, **kwargs)
+
+
+def disk_wrapper_fun(*argv, **kwargs):
+    """
+    Create a wrapper for function
+
+    :param argv: args of func
+    :param kwargs: kwargs of func
+
+    :return: path to results
+    """
+
+    # Get function to wrap and id_list
+    try:
+        id_list = kwargs["id_list"]
+        func = kwargs["fun"]
+        tmp_dir = kwargs["tmp_dir"]
+        kwargs.pop("id_list")
+        kwargs.pop("fun")
+        kwargs.pop("tmp_dir")
+    except Exception as exc:  # pylint: disable=W0702 # noqa: B001, E722
+        raise RuntimeError(
+            "Failed in unwrapping. \n Args: {}, \n Kwargs: {}\n".format(
+                argv, kwargs
+            )
+        ) from exc
+
+    # load args
+    loaded_argv = load_args_or_kwargs(argv)
+    loaded_kwargs = load_args_or_kwargs(kwargs)
+
+    # call function
+    res = func(*loaded_argv[:], **loaded_kwargs)
+
+    if res is not None:
+        to_disk_res = dump(res, tmp_dir, id_list)
+    else:
+        to_disk_res = res
+
+    return to_disk_res
+
+
+def load_args_or_kwargs(args_or_kwargs):
+    """
+    Load args or kwargs from disk to memory
+
+    :param args_or_kwargs: args or kwargs of func
+
+    :return: new args
+
+    """
+
+    def transform_path_to_obj(obj):
+        """
+        Transform path to object
+
+        :param obj: object
+
+        """
+        res = obj
+        if is_dumped_object(obj):
+            res = load(obj)
+
+        return res
+
+    # replace data
+    return replace_data(args_or_kwargs, transform_path_to_obj)
+
+
+def is_dumped_object(obj):
+    """
+    Check if a given object is dumped
+
+    :param obj: object
+
+    :return: is dumped
+    :rtype: bool
+    """
+
+    is_dumped = False
+    if isinstance(obj, str):
+        if (
+            DENSE_NAME in obj
+            or SPARSE_NAME in obj
+            or DICT_NAME in obj
+            or SHARED_NAME in obj
+        ):
+            is_dumped = True
+
+    return is_dumped
+
+
+def load(path):
+    """
+    Load object from disk
+
+    :param path: path
+    :type path: str
+
+    :return: object
+    """
+
+    if path is not None:
+        obj = path
+        if DENSE_NAME in path:
+            obj = cars_dataset.CarsDataset("arrays").load_single_tile(path)
+        elif SPARSE_NAME in path:
+            obj = cars_dataset.CarsDataset("points").load_single_tile(path)
+        elif DICT_NAME in path:
+            obj = cars_dataset.CarsDataset("dict").load_single_tile(path)
+        elif SHARED_NAME in path:
+            obj = load_shared_data(path)
+
+        else:
+            logging.warning(
+                "Not a dumped arrays or points or dict or shared data"
+            )
+
+    else:
+        obj = None
+    return obj
+
+
+def load_shared_data(path):
+    """
+    Load shared object from disk
+
+    :param path: path
+    :type path: str
+
+    :return: object
+    """
+    with open(path, "rb") as handle:
+        obj = pickle.load(handle)
+    return obj
+
+
+def dump_single_object(obj, path):
+    """
+    Dump object to disk
+
+    :param path: path
+    :type path: str
+    """
+    if isinstance(obj, xr.Dataset):
+        # is from array
+        cars_dataset.CarsDataset("arrays").save_single_tile(obj, path)
+    elif isinstance(obj, pandas.DataFrame):
+        # is from points
+        cars_dataset.CarsDataset("points").save_single_tile(obj, path)
+    elif isinstance(obj, cars_dict.CarsDict):
+        # is from points
+        cars_dataset.CarsDataset("dict").save_single_tile(obj, path)
+    else:
+        raise TypeError("Not an arrays or points or dict")
+
+
+def create_path(obj, tmp_dir, id_num):
+    """
+    Create path where to dump object
+
+    :param tmp_dir: tmp_dir
+    :param id_num: id of object
+
+    :return: path
+    """
+
+    path = None
+
+    if isinstance(obj, xr.Dataset):
+        # is from array
+        path = DENSE_NAME
+    elif isinstance(obj, pandas.DataFrame):
+        # is from points
+        path = SPARSE_NAME
+    elif isinstance(obj, cars_dict.CarsDict):
+        # is from dict
+        path = DICT_NAME
+    else:
+        logging.warning("Not an arrays or points or dict")
+        path = obj
+
+    path = os.path.join(tmp_dir, path + "_" + repr(id_num))
+
+    return path
+
+
+def dump(res, tmp_dir, id_list):
+    """
+    Dump results to tmp_dir, according to ids
+
+    :param res: objects to dump
+    :param tmp_dir: tmp_dir
+    :param id_list: list of ids of objects
+
+    :return: path
+    """
+
+    paths = None
+
+    if len(id_list) > 1:
+        paths = []
+        for i, single_id in enumerate(id_list):
+            if res[i] is not None:
+                path = create_path(res[i], tmp_dir, single_id)
+                dump_single_object(res[i], path)
+                paths.append(path)
+            else:
+                paths.append(None)
+
+        paths = (*paths,)
+
+    else:
+        paths = create_path(res, tmp_dir, id_list[0])
+        dump_single_object(res, paths)
+
+    return paths