cars 1.0.0rc1__cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl

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  1. cars/__init__.py +74 -0
  2. cars/applications/__init__.py +37 -0
  3. cars/applications/application.py +117 -0
  4. cars/applications/application_constants.py +29 -0
  5. cars/applications/application_template.py +146 -0
  6. cars/applications/auxiliary_filling/__init__.py +29 -0
  7. cars/applications/auxiliary_filling/abstract_auxiliary_filling_app.py +104 -0
  8. cars/applications/auxiliary_filling/auxiliary_filling_algo.py +475 -0
  9. cars/applications/auxiliary_filling/auxiliary_filling_from_sensors_app.py +630 -0
  10. cars/applications/auxiliary_filling/auxiliary_filling_wrappers.py +90 -0
  11. cars/applications/dem_generation/__init__.py +30 -0
  12. cars/applications/dem_generation/abstract_dem_generation_app.py +116 -0
  13. cars/applications/dem_generation/bulldozer_config/base_config.yaml +42 -0
  14. cars/applications/dem_generation/bulldozer_dem_app.py +655 -0
  15. cars/applications/dem_generation/bulldozer_memory.py +55 -0
  16. cars/applications/dem_generation/dem_generation_algo.py +107 -0
  17. cars/applications/dem_generation/dem_generation_constants.py +32 -0
  18. cars/applications/dem_generation/dem_generation_wrappers.py +323 -0
  19. cars/applications/dense_match_filling/__init__.py +30 -0
  20. cars/applications/dense_match_filling/abstract_dense_match_filling_app.py +242 -0
  21. cars/applications/dense_match_filling/fill_disp_algo.py +113 -0
  22. cars/applications/dense_match_filling/fill_disp_constants.py +39 -0
  23. cars/applications/dense_match_filling/fill_disp_wrappers.py +83 -0
  24. cars/applications/dense_match_filling/zero_padding_app.py +302 -0
  25. cars/applications/dense_matching/__init__.py +30 -0
  26. cars/applications/dense_matching/abstract_dense_matching_app.py +261 -0
  27. cars/applications/dense_matching/census_mccnn_sgm_app.py +1460 -0
  28. cars/applications/dense_matching/cpp/__init__.py +0 -0
  29. cars/applications/dense_matching/cpp/dense_matching_cpp.cpython-312-i386-linux-gnu.so +0 -0
  30. cars/applications/dense_matching/cpp/dense_matching_cpp.py +94 -0
  31. cars/applications/dense_matching/cpp/includes/dense_matching.hpp +58 -0
  32. cars/applications/dense_matching/cpp/meson.build +9 -0
  33. cars/applications/dense_matching/cpp/src/bindings.cpp +13 -0
  34. cars/applications/dense_matching/cpp/src/dense_matching.cpp +207 -0
  35. cars/applications/dense_matching/dense_matching_algo.py +401 -0
  36. cars/applications/dense_matching/dense_matching_constants.py +89 -0
  37. cars/applications/dense_matching/dense_matching_wrappers.py +951 -0
  38. cars/applications/dense_matching/disparity_grid_algo.py +588 -0
  39. cars/applications/dense_matching/loaders/__init__.py +23 -0
  40. cars/applications/dense_matching/loaders/config_census_sgm_default.json +31 -0
  41. cars/applications/dense_matching/loaders/config_census_sgm_homogeneous.json +30 -0
  42. cars/applications/dense_matching/loaders/config_census_sgm_mountain_and_vegetation.json +30 -0
  43. cars/applications/dense_matching/loaders/config_census_sgm_shadow.json +30 -0
  44. cars/applications/dense_matching/loaders/config_census_sgm_sparse.json +36 -0
  45. cars/applications/dense_matching/loaders/config_census_sgm_urban.json +30 -0
  46. cars/applications/dense_matching/loaders/config_mapping.json +13 -0
  47. cars/applications/dense_matching/loaders/config_mccnn.json +28 -0
  48. cars/applications/dense_matching/loaders/global_land_cover_map.tif +0 -0
  49. cars/applications/dense_matching/loaders/pandora_loader.py +593 -0
  50. cars/applications/dsm_filling/__init__.py +32 -0
  51. cars/applications/dsm_filling/abstract_dsm_filling_app.py +101 -0
  52. cars/applications/dsm_filling/border_interpolation_app.py +270 -0
  53. cars/applications/dsm_filling/bulldozer_config/base_config.yaml +44 -0
  54. cars/applications/dsm_filling/bulldozer_filling_app.py +279 -0
  55. cars/applications/dsm_filling/exogenous_filling_app.py +333 -0
  56. cars/applications/grid_generation/__init__.py +30 -0
  57. cars/applications/grid_generation/abstract_grid_generation_app.py +142 -0
  58. cars/applications/grid_generation/epipolar_grid_generation_app.py +327 -0
  59. cars/applications/grid_generation/grid_correction_app.py +496 -0
  60. cars/applications/grid_generation/grid_generation_algo.py +388 -0
  61. cars/applications/grid_generation/grid_generation_constants.py +46 -0
  62. cars/applications/grid_generation/transform_grid.py +88 -0
  63. cars/applications/ground_truth_reprojection/__init__.py +30 -0
  64. cars/applications/ground_truth_reprojection/abstract_ground_truth_reprojection_app.py +137 -0
  65. cars/applications/ground_truth_reprojection/direct_localization_app.py +629 -0
  66. cars/applications/ground_truth_reprojection/ground_truth_reprojection_algo.py +275 -0
  67. cars/applications/point_cloud_outlier_removal/__init__.py +30 -0
  68. cars/applications/point_cloud_outlier_removal/abstract_outlier_removal_app.py +385 -0
  69. cars/applications/point_cloud_outlier_removal/outlier_removal_algo.py +392 -0
  70. cars/applications/point_cloud_outlier_removal/outlier_removal_constants.py +43 -0
  71. cars/applications/point_cloud_outlier_removal/small_components_app.py +527 -0
  72. cars/applications/point_cloud_outlier_removal/statistical_app.py +531 -0
  73. cars/applications/rasterization/__init__.py +30 -0
  74. cars/applications/rasterization/abstract_pc_rasterization_app.py +183 -0
  75. cars/applications/rasterization/rasterization_algo.py +534 -0
  76. cars/applications/rasterization/rasterization_constants.py +38 -0
  77. cars/applications/rasterization/rasterization_wrappers.py +634 -0
  78. cars/applications/rasterization/simple_gaussian_app.py +1152 -0
  79. cars/applications/resampling/__init__.py +28 -0
  80. cars/applications/resampling/abstract_resampling_app.py +187 -0
  81. cars/applications/resampling/bicubic_resampling_app.py +762 -0
  82. cars/applications/resampling/resampling_algo.py +614 -0
  83. cars/applications/resampling/resampling_constants.py +36 -0
  84. cars/applications/resampling/resampling_wrappers.py +309 -0
  85. cars/applications/sparse_matching/__init__.py +30 -0
  86. cars/applications/sparse_matching/abstract_sparse_matching_app.py +498 -0
  87. cars/applications/sparse_matching/sift_app.py +735 -0
  88. cars/applications/sparse_matching/sparse_matching_algo.py +360 -0
  89. cars/applications/sparse_matching/sparse_matching_constants.py +68 -0
  90. cars/applications/sparse_matching/sparse_matching_wrappers.py +238 -0
  91. cars/applications/triangulation/__init__.py +32 -0
  92. cars/applications/triangulation/abstract_triangulation_app.py +227 -0
  93. cars/applications/triangulation/line_of_sight_intersection_app.py +1243 -0
  94. cars/applications/triangulation/pc_transform.py +552 -0
  95. cars/applications/triangulation/triangulation_algo.py +371 -0
  96. cars/applications/triangulation/triangulation_constants.py +38 -0
  97. cars/applications/triangulation/triangulation_wrappers.py +259 -0
  98. cars/bundleadjustment.py +757 -0
  99. cars/cars.py +177 -0
  100. cars/conf/__init__.py +23 -0
  101. cars/conf/geoid/egm96.grd +0 -0
  102. cars/conf/geoid/egm96.grd.hdr +15 -0
  103. cars/conf/input_parameters.py +156 -0
  104. cars/conf/mask_cst.py +35 -0
  105. cars/core/__init__.py +23 -0
  106. cars/core/cars_logging.py +402 -0
  107. cars/core/constants.py +191 -0
  108. cars/core/constants_disparity.py +50 -0
  109. cars/core/datasets.py +140 -0
  110. cars/core/geometry/__init__.py +27 -0
  111. cars/core/geometry/abstract_geometry.py +1119 -0
  112. cars/core/geometry/shareloc_geometry.py +598 -0
  113. cars/core/inputs.py +568 -0
  114. cars/core/outputs.py +176 -0
  115. cars/core/preprocessing.py +722 -0
  116. cars/core/projection.py +843 -0
  117. cars/core/roi_tools.py +215 -0
  118. cars/core/tiling.py +774 -0
  119. cars/core/utils.py +164 -0
  120. cars/data_structures/__init__.py +23 -0
  121. cars/data_structures/cars_dataset.py +1541 -0
  122. cars/data_structures/cars_dict.py +74 -0
  123. cars/data_structures/corresponding_tiles_tools.py +186 -0
  124. cars/data_structures/dataframe_converter.py +185 -0
  125. cars/data_structures/format_transformation.py +297 -0
  126. cars/devibrate.py +689 -0
  127. cars/extractroi.py +264 -0
  128. cars/orchestrator/__init__.py +23 -0
  129. cars/orchestrator/achievement_tracker.py +125 -0
  130. cars/orchestrator/cluster/__init__.py +37 -0
  131. cars/orchestrator/cluster/abstract_cluster.py +244 -0
  132. cars/orchestrator/cluster/abstract_dask_cluster.py +375 -0
  133. cars/orchestrator/cluster/dask_cluster_tools.py +103 -0
  134. cars/orchestrator/cluster/dask_config/README.md +94 -0
  135. cars/orchestrator/cluster/dask_config/dask.yaml +21 -0
  136. cars/orchestrator/cluster/dask_config/distributed.yaml +70 -0
  137. cars/orchestrator/cluster/dask_config/jobqueue.yaml +26 -0
  138. cars/orchestrator/cluster/dask_config/reference_confs/dask-schema.yaml +137 -0
  139. cars/orchestrator/cluster/dask_config/reference_confs/dask.yaml +26 -0
  140. cars/orchestrator/cluster/dask_config/reference_confs/distributed-schema.yaml +1009 -0
  141. cars/orchestrator/cluster/dask_config/reference_confs/distributed.yaml +273 -0
  142. cars/orchestrator/cluster/dask_config/reference_confs/jobqueue.yaml +212 -0
  143. cars/orchestrator/cluster/dask_jobqueue_utils.py +204 -0
  144. cars/orchestrator/cluster/local_dask_cluster.py +116 -0
  145. cars/orchestrator/cluster/log_wrapper.py +1075 -0
  146. cars/orchestrator/cluster/mp_cluster/__init__.py +27 -0
  147. cars/orchestrator/cluster/mp_cluster/mp_factorizer.py +212 -0
  148. cars/orchestrator/cluster/mp_cluster/mp_objects.py +535 -0
  149. cars/orchestrator/cluster/mp_cluster/mp_tools.py +93 -0
  150. cars/orchestrator/cluster/mp_cluster/mp_wrapper.py +505 -0
  151. cars/orchestrator/cluster/mp_cluster/multiprocessing_cluster.py +873 -0
  152. cars/orchestrator/cluster/mp_cluster/multiprocessing_profiler.py +399 -0
  153. cars/orchestrator/cluster/pbs_dask_cluster.py +207 -0
  154. cars/orchestrator/cluster/sequential_cluster.py +139 -0
  155. cars/orchestrator/cluster/slurm_dask_cluster.py +234 -0
  156. cars/orchestrator/orchestrator.py +905 -0
  157. cars/orchestrator/orchestrator_constants.py +29 -0
  158. cars/orchestrator/registry/__init__.py +23 -0
  159. cars/orchestrator/registry/abstract_registry.py +143 -0
  160. cars/orchestrator/registry/compute_registry.py +106 -0
  161. cars/orchestrator/registry/id_generator.py +116 -0
  162. cars/orchestrator/registry/replacer_registry.py +213 -0
  163. cars/orchestrator/registry/saver_registry.py +363 -0
  164. cars/orchestrator/registry/unseen_registry.py +118 -0
  165. cars/orchestrator/tiles_profiler.py +279 -0
  166. cars/pipelines/__init__.py +26 -0
  167. cars/pipelines/conf_resolution/conf_final_resolution.yaml +5 -0
  168. cars/pipelines/conf_resolution/conf_first_resolution.yaml +2 -0
  169. cars/pipelines/conf_resolution/conf_intermediate_resolution.yaml +2 -0
  170. cars/pipelines/default/__init__.py +26 -0
  171. cars/pipelines/default/default_pipeline.py +786 -0
  172. cars/pipelines/parameters/__init__.py +0 -0
  173. cars/pipelines/parameters/advanced_parameters.py +417 -0
  174. cars/pipelines/parameters/advanced_parameters_constants.py +69 -0
  175. cars/pipelines/parameters/application_parameters.py +71 -0
  176. cars/pipelines/parameters/depth_map_inputs.py +0 -0
  177. cars/pipelines/parameters/dsm_inputs.py +918 -0
  178. cars/pipelines/parameters/dsm_inputs_constants.py +25 -0
  179. cars/pipelines/parameters/output_constants.py +52 -0
  180. cars/pipelines/parameters/output_parameters.py +454 -0
  181. cars/pipelines/parameters/sensor_inputs.py +842 -0
  182. cars/pipelines/parameters/sensor_inputs_constants.py +49 -0
  183. cars/pipelines/parameters/sensor_loaders/__init__.py +29 -0
  184. cars/pipelines/parameters/sensor_loaders/basic_classif_loader.py +86 -0
  185. cars/pipelines/parameters/sensor_loaders/basic_image_loader.py +98 -0
  186. cars/pipelines/parameters/sensor_loaders/pivot_classif_loader.py +90 -0
  187. cars/pipelines/parameters/sensor_loaders/pivot_image_loader.py +105 -0
  188. cars/pipelines/parameters/sensor_loaders/sensor_loader.py +93 -0
  189. cars/pipelines/parameters/sensor_loaders/sensor_loader_template.py +71 -0
  190. cars/pipelines/parameters/sensor_loaders/slurp_classif_loader.py +86 -0
  191. cars/pipelines/pipeline.py +119 -0
  192. cars/pipelines/pipeline_constants.py +31 -0
  193. cars/pipelines/pipeline_template.py +139 -0
  194. cars/pipelines/unit/__init__.py +26 -0
  195. cars/pipelines/unit/unit_pipeline.py +2850 -0
  196. cars/starter.py +167 -0
  197. cars-1.0.0rc1.dist-info/METADATA +292 -0
  198. cars-1.0.0rc1.dist-info/RECORD +200 -0
  199. cars-1.0.0rc1.dist-info/WHEEL +6 -0
  200. cars-1.0.0rc1.dist-info/entry_points.txt +8 -0
@@ -0,0 +1,28 @@
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+ # !/usr/bin/env python
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+ # coding: utf8
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+ #
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+ # Copyright (c) 2020 Centre National d'Etudes Spatiales (CNES).
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+ #
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+ # This file is part of CARS
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+ # (see https://github.com/CNES/cars).
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
12
+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ #
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+ """
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+ CARS core resampling module init file
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+ """
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+ # flake8: noqa: F401
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+
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+ from cars.applications.resampling.abstract_resampling_app import Resampling
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+
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+ from . import bicubic_resampling_app
@@ -0,0 +1,187 @@
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+ #!/usr/bin/env python
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+ # coding: utf8
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+ #
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+ # Copyright (c) 2020 Centre National d'Etudes Spatiales (CNES).
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+ #
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+ # This file is part of CARS
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+ # (see https://github.com/CNES/cars).
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ #
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+ """
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+ this module contains the abstract resampling application class.
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+ """
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+ import logging
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+ from abc import ABCMeta, abstractmethod
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+ from typing import Dict
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+
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+ from cars.applications.application import Application
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+ from cars.applications.application_template import ApplicationTemplate
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+
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+
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+ @Application.register("resampling")
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+ class Resampling(ApplicationTemplate, metaclass=ABCMeta):
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+ """
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+ Resampling
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+ """
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+
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+ available_applications: Dict = {}
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+ default_application = "bicubic"
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+
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+ def __new__(cls, orchestrator=None, conf=None): # pylint: disable=W0613
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+ """
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+ Return the required application
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+ :raises:
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+ - KeyError when the required application is not registered
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+
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+ :param orchestrator: orchestrator used
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+ :param conf: configuration for resampling
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+ :return: an application_to_use object
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+ """
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+
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+ resampling_method = cls.default_application
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+ if bool(conf) is False or "method" not in conf:
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+ logging.info(
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+ "Resampling method not specified, default"
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+ " {} is used".format(resampling_method)
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+ )
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+ else:
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+ resampling_method = conf["method"]
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+
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+ if resampling_method not in cls.available_applications:
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+ logging.error(
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+ "No resampling application named {} registered".format(
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+ resampling_method
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+ )
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+ )
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+ raise KeyError(
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+ "No resampling application named {} registered".format(
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+ resampling_method
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+ )
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+ )
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+
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+ logging.info(
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+ "The Resampling({}) application will be used".format(
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+ resampling_method
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+ )
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+ )
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+
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+ return super(Resampling, cls).__new__(
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+ cls.available_applications[resampling_method]
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+ )
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+
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+ def __init_subclass__(cls, short_name, **kwargs): # pylint: disable=E0302
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+ super().__init_subclass__(**kwargs)
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+ cls.available_applications[short_name] = cls
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+
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+ def __init__(self, conf=None):
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+ """
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+ Init function of Resampling
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+
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+ :param conf: configuration
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+ :return: an application_to_use object
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+ """
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+
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+ super().__init__(conf=conf)
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+
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+ @abstractmethod
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+ def run( # pylint: disable=too-many-positional-arguments
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+ self,
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+ sensor_image_left,
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+ sensor_image_right,
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+ grid_left,
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+ grid_right,
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+ geom_plugin,
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+ orchestrator=None,
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+ pair_folder=None,
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+ pair_key="PAIR_0",
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+ margins_fun=None,
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+ tile_width=None,
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+ tile_height=None,
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+ step=None,
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+ add_color=True,
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+ add_classif=True,
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+ epipolar_roi=None,
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+ required_bands=None,
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+ texture_bands=None,
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+ resolution=1,
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+ ): # noqa: C901
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+ """
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+ Run resampling application.
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+
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+ Creates left and right CarsDataset filled with xarray.Dataset,
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+ corresponding to sensor images resampled in epipolar geometry.
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+
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+ :param sensor_images_left: tiled sensor left image
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+ Dict Must contain keys : "image", "texture", "geomodel",
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+ "no_data", "mask", "classification". Paths must be absolutes
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+ :type sensor_images_left: CarsDataset
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+ :param sensor_images_right: tiled sensor right image
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+ Dict Must contain keys : "image", "texture", "geomodel",
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+ "no_data", "mask", "classification". Paths must be absolutes
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+ :type sensor_images_right: CarsDataset
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+ :param grid_left: left epipolar grid
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+ Grid CarsDataset contains :
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+
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+ - A single tile stored in [0,0], containing a (N, M, 2) shape
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+ array in xarray Dataset
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+ - Attributes containing: "grid_spacing", "grid_origin", \
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+ "epipolar_size_x", "epipolar_size_y", "epipolar_origin_x",\
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+ "epipolar_origin_y", epipolar_spacing_x",\
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+ "epipolar_spacing", "disp_to_alt_ratio",\
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+ :type grid_left: CarsDataset
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+ :param grid_right: right epipolar grid. Grid CarsDataset contains :
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+
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+ - A single tile stored in [0,0], containing a (N, M, 2) shape \
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+ array in xarray Dataset
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+ - Attributes containing: "grid_spacing", "grid_origin",\
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+ "epipolar_size_x", "epipolar_size_y", "epipolar_origin_x",\
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+ "epipolar_origin_y", epipolar_spacing_x",\
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+ "epipolar_spacing", "disp_to_alt_ratio",
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+ :type grid_right: CarsDataset
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+ :param orchestrator: orchestrator used
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+ :param pair_folder: folder used for current pair
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+ :type pair_folder: directory to save files to
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+ :param pair_key: pair id
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+ :type pair_key: str
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+ :param margins: margins to use
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+ :type margins: xr.Dataset
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+ :param optimum_tile_size: optimum tile size to use
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+ :type optimum_tile_size: int
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+ :param add_color: add color image to dataset
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+ :type add_color: bool
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+ :param epipolar_roi: Epipolar roi to use if set.
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+ Set None tiles outsize roi
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+ :type epipolar_roi: list(int), [row_min, row_max, col_min, col_max]
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+ :param required_bands: bands to resample on left and right image
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+ :type required_bands: dict
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+ :param texture_bands: name of bands used for output texture
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+ :type texture_bands: list
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+ :param resolution: resolution for downsampling
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+ :type resolution: int
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+
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+ :return: left epipolar image, right epipolar image. \
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+ Each CarsDataset contains:
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+
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+ - N x M Delayed tiles. \
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+ Each tile will be a future xarray Dataset containing:
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+
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+ - data with keys : "im", "msk", "texture", "classif"
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+ - attrs with keys: "margins" with "disp_min" and "disp_max"\
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+ "transform", "crs", "valid_pixels", "no_data_mask",
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+ "no_data_img"
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+ - attributes containing: \
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+ "largest_epipolar_region","opt_epipolar_tile_size"
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+
186
+ :rtype: Tuple(CarsDataset, CarsDataset)
187
+ """