capytaine 3.0.0a1__cp38-cp38-macosx_15_0_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- capytaine/.dylibs/libgcc_s.1.1.dylib +0 -0
- capytaine/.dylibs/libgfortran.5.dylib +0 -0
- capytaine/.dylibs/libquadmath.0.dylib +0 -0
- capytaine/__about__.py +21 -0
- capytaine/__init__.py +32 -0
- capytaine/bem/__init__.py +0 -0
- capytaine/bem/airy_waves.py +111 -0
- capytaine/bem/engines.py +321 -0
- capytaine/bem/problems_and_results.py +601 -0
- capytaine/bem/solver.py +718 -0
- capytaine/bodies/__init__.py +4 -0
- capytaine/bodies/bodies.py +630 -0
- capytaine/bodies/dofs.py +146 -0
- capytaine/bodies/hydrostatics.py +540 -0
- capytaine/bodies/multibodies.py +216 -0
- capytaine/green_functions/Delhommeau_float32.cpython-38-darwin.so +0 -0
- capytaine/green_functions/Delhommeau_float64.cpython-38-darwin.so +0 -0
- capytaine/green_functions/__init__.py +2 -0
- capytaine/green_functions/abstract_green_function.py +64 -0
- capytaine/green_functions/delhommeau.py +522 -0
- capytaine/green_functions/hams.py +210 -0
- capytaine/io/__init__.py +0 -0
- capytaine/io/bemio.py +153 -0
- capytaine/io/legacy.py +228 -0
- capytaine/io/wamit.py +479 -0
- capytaine/io/xarray.py +673 -0
- capytaine/meshes/__init__.py +2 -0
- capytaine/meshes/abstract_meshes.py +375 -0
- capytaine/meshes/clean.py +302 -0
- capytaine/meshes/clip.py +347 -0
- capytaine/meshes/export.py +89 -0
- capytaine/meshes/geometry.py +259 -0
- capytaine/meshes/io.py +433 -0
- capytaine/meshes/meshes.py +826 -0
- capytaine/meshes/predefined/__init__.py +6 -0
- capytaine/meshes/predefined/cylinders.py +280 -0
- capytaine/meshes/predefined/rectangles.py +202 -0
- capytaine/meshes/predefined/spheres.py +55 -0
- capytaine/meshes/quality.py +159 -0
- capytaine/meshes/surface_integrals.py +82 -0
- capytaine/meshes/symmetric_meshes.py +641 -0
- capytaine/meshes/visualization.py +353 -0
- capytaine/post_pro/__init__.py +6 -0
- capytaine/post_pro/free_surfaces.py +85 -0
- capytaine/post_pro/impedance.py +92 -0
- capytaine/post_pro/kochin.py +54 -0
- capytaine/post_pro/rao.py +60 -0
- capytaine/tools/__init__.py +0 -0
- capytaine/tools/block_circulant_matrices.py +275 -0
- capytaine/tools/cache_on_disk.py +26 -0
- capytaine/tools/deprecation_handling.py +18 -0
- capytaine/tools/lists_of_points.py +52 -0
- capytaine/tools/memory_monitor.py +45 -0
- capytaine/tools/optional_imports.py +27 -0
- capytaine/tools/prony_decomposition.py +150 -0
- capytaine/tools/symbolic_multiplication.py +161 -0
- capytaine/tools/timer.py +90 -0
- capytaine/ui/__init__.py +0 -0
- capytaine/ui/cli.py +28 -0
- capytaine/ui/rich.py +5 -0
- capytaine-3.0.0a1.dist-info/LICENSE +674 -0
- capytaine-3.0.0a1.dist-info/METADATA +755 -0
- capytaine-3.0.0a1.dist-info/RECORD +65 -0
- capytaine-3.0.0a1.dist-info/WHEEL +4 -0
- capytaine-3.0.0a1.dist-info/entry_points.txt +3 -0
capytaine/bem/solver.py
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# Copyright (C) 2017-2024 Matthieu Ancellin
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# See LICENSE file at <https://github.com/capytaine/capytaine>
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"""Solver for the BEM problem.
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.. code-block:: python
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problem = RadiationProblem(...)
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result = BEMSolver(engine=..., method=...).solve(problem)
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"""
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import os
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import shutil
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import textwrap
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import logging
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import numpy as np
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from datetime import datetime
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from collections import defaultdict
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from rich.progress import track
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from capytaine.bem.problems_and_results import LinearPotentialFlowProblem, DiffractionProblem
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from capytaine.bem.engines import BasicMatrixEngine
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from capytaine.io.xarray import problems_from_dataset, assemble_dataset, kochin_data_array
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from capytaine.tools.memory_monitor import MemoryMonitor
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from capytaine.tools.optional_imports import silently_import_optional_dependency
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from capytaine.tools.lists_of_points import _normalize_points, _normalize_free_surface_points
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from capytaine.tools.symbolic_multiplication import supporting_symbolic_multiplication
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from capytaine.tools.timer import Timer
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LOG = logging.getLogger(__name__)
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# Mapping between a dtype and its complex version
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COMPLEX_DTYPE = {
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np.float32: np.complex64,
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np.float64: np.complex128,
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np.complex64 : np.complex64,
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np.complex128 : np.complex128
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}
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class BEMSolver:
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"""
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Solver for linear potential flow problems.
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Parameters
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----------
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engine: MatrixEngine, optional
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Object handling the building of matrices and the resolution of linear systems with these matrices.
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(default: :class:`~capytaine.bem.engines.BasicMatrixEngine`)
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method: string, optional
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select boundary integral equation used to solve the problems.
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Accepted values: "indirect" (as in e.g. Nemoh), "direct" (as in e.g. WAMIT)
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Default value: "indirect"
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green_function: AbstractGreenFunction, optional
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For convenience and backward compatibility, the Green function can be
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set here if the engine is the default one.
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This argument is just passed to the default engine at initialization.
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Attributes
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----------
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timer: Timer
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Storing the time spent on each subtasks of the resolution
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exportable_settings : dict
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Settings of the solver that can be saved to reinit the same solver later.
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"""
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def __init__(self, *, green_function=None, engine=None, method="indirect"):
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if engine is None:
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self.engine = BasicMatrixEngine(green_function=green_function)
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else:
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if green_function is not None:
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raise ValueError("If you are not using the default engine, set the Green function in the engine.\n"
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"Setting the Green function in the solver is only a shortcut to set up "
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"the Green function of the default engine since Capytaine version 3.0")
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self.engine = engine
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if method.lower() not in {"direct", "indirect"}:
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raise ValueError(f"Unrecognized method when initializing solver: {repr(method)}. Expected \"direct\" or \"indirect\".")
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self.method = method.lower()
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self.reset_timer()
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self.exportable_settings = {
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**self.engine.exportable_settings,
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"method": self.method,
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}
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def __str__(self):
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return f"BEMSolver(engine={self.engine}, method={self.method})"
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def __repr__(self):
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return self.__str__()
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def reset_timer(self):
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self.timer = Timer(default_tags={"process": 0})
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self.solve = self.timer.wraps_function(step="Total solve function")(self._solve)
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def timer_summary(self):
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df = self.timer.as_dataframe()
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df["step"] = df["step"].where(
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df["step"].str.startswith("Total"), " " + df["step"]
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)
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total = (
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df.groupby(["step", "process"])
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["timing"].sum()
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.unstack()
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)
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return total
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def displayed_total_summary(self, width=None):
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total = self.timer_summary()
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if width is None:
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width = shutil.get_terminal_size(fallback=(80, 20)).columns - 25
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total_str = total.to_string(
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float_format="{:.2f}".format,
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line_width=width,
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)
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return textwrap.indent(total_str, " ")
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def _repr_pretty_(self, p, cycle):
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p.text(self.__str__())
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@classmethod
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def from_exported_settings(settings):
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raise NotImplementedError
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def _solve(self, problem, method=None, keep_details=True, _check_wavelength=True):
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"""Solve the linear potential flow problem.
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Parameters
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----------
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problem: LinearPotentialFlowProblem
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the problem to be solved
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method: string, optional
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select boundary integral equation used to solve the problem.
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It is recommended to set the method more globally when initializing the solver.
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If provided here, the value in argument of `solve` overrides the global one.
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keep_details: bool, optional
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if True, store the sources and the potential on the floating body in the output object
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(default: True)
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_check_wavelength: bool, optional (default: True)
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If True, the frequencies are compared to the mesh resolution and
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the estimated first irregular frequency to warn the user.
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Returns
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-------
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LinearPotentialFlowResult
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an object storing the problem data and its results
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"""
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LOG.info("Solve %s.", problem)
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if _check_wavelength:
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self._check_wavelength_and_mesh_resolution([problem])
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self._check_wavelength_and_irregular_frequencies([problem])
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if isinstance(problem, DiffractionProblem) and float(problem.encounter_omega) in {0.0, np.inf}:
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raise ValueError("Diffraction problems at zero or infinite frequency are not defined")
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# This error used to be raised when initializing the problem.
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# It is now raised here, in order to be catchable by
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# _solve_and_catch_errors, such that batch resolution
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# can include this kind of problems without the full batch
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# failing.
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# Note that if this error was not raised here, the resolution
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# would still fail with a less explicit error message.
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if problem.forward_speed != 0.0:
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omega, wavenumber = problem.encounter_omega, problem.encounter_wavenumber
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else:
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omega, wavenumber = problem.omega, problem.wavenumber
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gf_params = dict(free_surface=problem.free_surface, water_depth=problem.water_depth, wavenumber=wavenumber)
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linear_solver = supporting_symbolic_multiplication(self.engine.linear_solver)
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method = method if method is not None else self.method
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if (method == 'direct'):
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if problem.forward_speed != 0.0:
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raise NotImplementedError("Direct solver is not able to solve problems with forward speed.")
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with self.timer(step="Green function"):
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S, D = self.engine.build_matrices(
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problem.body.mesh_including_lid, problem.body.mesh_including_lid,
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**gf_params, adjoint_double_layer=False, diagonal_term_in_double_layer=True,
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)
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with self.timer(step="Matrix-vector product"):
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rhs = S @ problem.boundary_condition
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with self.timer(step="Linear solver"):
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rhs = rhs.astype(COMPLEX_DTYPE[D.dtype.type])
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potential = linear_solver(D, rhs)
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pressure = 1j * omega * problem.rho * potential
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sources = None
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else:
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with self.timer(step="Green function"):
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S, K = self.engine.build_matrices(
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problem.body.mesh_including_lid, problem.body.mesh_including_lid,
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**gf_params, adjoint_double_layer=True, diagonal_term_in_double_layer=True,
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)
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with self.timer(step="Linear solver"):
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rhs = problem.boundary_condition.astype(COMPLEX_DTYPE[K.dtype.type])
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sources = linear_solver(K, rhs)
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with self.timer(step="Matrix-vector product"):
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potential = S @ sources
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pressure = 1j * omega * problem.rho * potential
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if problem.forward_speed != 0.0:
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result = problem.make_results_container(sources=sources)
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# Temporary result object to compute the ∇Φ term
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nabla_phi = self._compute_potential_gradient(problem.body.mesh_including_lid, result)
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pressure += problem.rho * problem.forward_speed * nabla_phi[:, 0]
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pressure_on_hull = pressure[problem.body.hull_mask] # Discards pressure on lid if any
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forces = problem.body.integrate_pressure(pressure_on_hull)
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if not keep_details:
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result = problem.make_results_container(forces)
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else:
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result = problem.make_results_container(forces, sources, potential, pressure)
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LOG.debug("Done!")
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return result
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def _solve_and_catch_errors(self, problem, *args, _display_errors, **kwargs):
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"""Same as BEMSolver.solve() but returns a
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FailedLinearPotentialFlowResult when the resolution failed."""
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try:
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res = self.solve(problem, *args, **kwargs)
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except Exception as e:
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res = problem.make_failed_results_container(e)
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if _display_errors:
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self._display_errors([res])
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return res
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@staticmethod
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def _display_errors(results):
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"""Displays errors that occur during the solver execution and groups them according
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to the problem type and exception type for easier reading."""
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failed_results = defaultdict(list)
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for res in results:
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if hasattr(res, "exception") and hasattr(res, "problem"):
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key = (type(res.exception), str(res.exception), res.problem.omega, res.problem.water_depth, res.problem.forward_speed)
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failed_results[key].append(res.problem)
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for (exc_type, exc_msg, omega, water_depth, forward_speed), problems in failed_results.items():
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nb = len(problems)
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if nb > 1:
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if forward_speed != 0.0:
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LOG.warning("Skipped %d problems for body=%s, omega=%s, water_depth=%s, forward_speed=%s\nbecause of %s(%r)",
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nb, problems[0].body.__short_str__(), omega, water_depth, forward_speed, exc_type.__name__, exc_msg)
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else:
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LOG.warning("Skipped %d problems for body=%s, omega=%s, water_depth=%s\nbecause of %s(%r)",
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nb, problems[0].body.__short_str__(), omega, water_depth, exc_type.__name__, exc_msg)
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else:
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LOG.warning("Skipped %s\nbecause of %s(%r)", problems[0], exc_type.__name__, exc_msg)
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def solve_all(self, problems, *, method=None, n_jobs=1, n_threads=None, progress_bar=None, _check_wavelength=True, _display_errors=True, **kwargs):
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"""Solve several problems.
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257
|
+
Optional keyword arguments are passed to `BEMSolver.solve`.
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258
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+
|
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259
|
+
Parameters
|
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260
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+
----------
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261
|
+
problems: list of LinearPotentialFlowProblem
|
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262
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+
several problems to be solved
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+
method: string, optional
|
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264
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+
select boundary integral equation used to solve the problems.
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265
|
+
It is recommended to set the method more globally when initializing the solver.
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266
|
+
If provided here, the value in argument of `solve_all` overrides the global one.
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267
|
+
n_jobs: int, optional (default: 1)
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268
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+
the number of jobs to run in parallel using the optional dependency ``joblib``
|
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269
|
+
By defaults: do not use joblib and solve sequentially.
|
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270
|
+
n_threads: int, optional
|
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271
|
+
the number of threads used to solve each problem.
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272
|
+
The total number of used CPU will be n_jobs×n_threads.
|
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273
|
+
By default: use as much as possible.
|
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274
|
+
Requires the optional dependency ``threadpoolctl`` if ``n_jobs==1``.
|
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275
|
+
Also controlled by the environment variables ``OMP_NUM_THREADS`` and ``MKL_NUM_THREADS``.
|
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276
|
+
progress_bar: bool, optional
|
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277
|
+
Display a progress bar while solving.
|
|
278
|
+
If no value is provided to this method directly,
|
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279
|
+
check whether the environment variable `CAPYTAINE_PROGRESS_BAR` is defined
|
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280
|
+
and otherwise default to True.
|
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281
|
+
_check_wavelength: bool, optional (default: True)
|
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282
|
+
If True, the frequencies are compared to the mesh resolution and
|
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283
|
+
the estimated first irregular frequency to warn the user.
|
|
284
|
+
|
|
285
|
+
Returns
|
|
286
|
+
-------
|
|
287
|
+
list of LinearPotentialFlowResult
|
|
288
|
+
the solved problems
|
|
289
|
+
"""
|
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290
|
+
if _check_wavelength:
|
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291
|
+
self._check_wavelength_and_mesh_resolution(problems)
|
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292
|
+
self._check_wavelength_and_irregular_frequencies(problems)
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293
|
+
|
|
294
|
+
self._check_ram(problems, n_jobs)
|
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295
|
+
|
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296
|
+
if progress_bar is None:
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297
|
+
if "CAPYTAINE_PROGRESS_BAR" in os.environ:
|
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298
|
+
env_var = os.environ["CAPYTAINE_PROGRESS_BAR"].lower()
|
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299
|
+
if env_var in {'true', '1', 't'}:
|
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300
|
+
progress_bar = True
|
|
301
|
+
elif env_var in {'false', '0', 'f'}:
|
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302
|
+
progress_bar = False
|
|
303
|
+
else:
|
|
304
|
+
raise ValueError("Invalid value '{}' for the environment variable CAPYTAINE_PROGRESS_BAR.".format(os.environ["CAPYTAINE_PROGRESS_BAR"]))
|
|
305
|
+
else:
|
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306
|
+
progress_bar = True
|
|
307
|
+
|
|
308
|
+
monitor = MemoryMonitor()
|
|
309
|
+
if n_jobs == 1: # force sequential resolution
|
|
310
|
+
problems = sorted(problems)
|
|
311
|
+
if progress_bar:
|
|
312
|
+
problems = track(problems, total=len(problems), description="Solving BEM problems")
|
|
313
|
+
if n_threads is None:
|
|
314
|
+
results = [self._solve_and_catch_errors(pb, method=method, _display_errors=_display_errors, _check_wavelength=False, **kwargs) for pb in problems]
|
|
315
|
+
else:
|
|
316
|
+
threadpoolctl = silently_import_optional_dependency("threadpoolctl")
|
|
317
|
+
if threadpoolctl is None:
|
|
318
|
+
raise ImportError(f"Setting the `n_threads` argument to {n_threads} with `n_jobs=1` requires the missing optional dependency 'threadpoolctl'.")
|
|
319
|
+
with threadpoolctl.threadpool_limits(limits=n_threads):
|
|
320
|
+
results = [self._solve_and_catch_errors(pb, method=method, _display_errors=_display_errors, _check_wavelength=False, **kwargs) for pb in problems]
|
|
321
|
+
else:
|
|
322
|
+
joblib = silently_import_optional_dependency("joblib")
|
|
323
|
+
if joblib is None:
|
|
324
|
+
raise ImportError(f"Setting the `n_jobs` argument to {n_jobs} requires the missing optional dependency 'joblib'.")
|
|
325
|
+
groups_of_problems = LinearPotentialFlowProblem._group_for_parallel_resolution(problems)
|
|
326
|
+
with joblib.parallel_config(backend='loky', inner_max_num_threads=n_threads):
|
|
327
|
+
parallel = joblib.Parallel(return_as="generator", n_jobs=n_jobs)
|
|
328
|
+
groups_of_results = parallel(joblib.delayed(self._solve_all_and_return_timer)(grp, method=method, n_threads=None, progress_bar=False, _display_errors=False, _check_wavelength=False, **kwargs) for grp in groups_of_problems)
|
|
329
|
+
if progress_bar:
|
|
330
|
+
groups_of_results = track(groups_of_results,
|
|
331
|
+
total=len(groups_of_problems),
|
|
332
|
+
description=f"Solving BEM problems with {n_jobs} processes:")
|
|
333
|
+
results = []
|
|
334
|
+
process_id_mapping = {}
|
|
335
|
+
for grp_results, other_timer, process_id in groups_of_results:
|
|
336
|
+
results.extend(grp_results)
|
|
337
|
+
self._display_errors(grp_results)
|
|
338
|
+
if process_id not in process_id_mapping:
|
|
339
|
+
process_id_mapping[process_id] = len(process_id_mapping) + 1
|
|
340
|
+
self.timer.add_data_from_other_timer(other_timer, process=process_id_mapping[process_id])
|
|
341
|
+
memory_peak = monitor.get_memory_peak()
|
|
342
|
+
if memory_peak is None:
|
|
343
|
+
LOG.info("Actual peak RAM usage: Not measured since optional dependency `psutil` cannot be found.")
|
|
344
|
+
else:
|
|
345
|
+
LOG.info(f"Actual peak RAM usage: {memory_peak} GB.")
|
|
346
|
+
LOG.info("Solver timer summary (in seconds):\n%s", self.displayed_total_summary())
|
|
347
|
+
return results
|
|
348
|
+
|
|
349
|
+
def _solve_all_and_return_timer(
|
|
350
|
+
self, grp, *,
|
|
351
|
+
method, n_threads,
|
|
352
|
+
progress_bar, _check_wavelength, **kwargs
|
|
353
|
+
):
|
|
354
|
+
# This method is only called in joblib's Parallel loop.
|
|
355
|
+
# It contains some pre-processing and post-processing that
|
|
356
|
+
# should be done in each process when solving the batch of problems.
|
|
357
|
+
|
|
358
|
+
self.reset_timer()
|
|
359
|
+
# Timer data will be concatenated to the Timer of process 0.
|
|
360
|
+
# We reset the timer at each call to avoid concatenating
|
|
361
|
+
# the same data twice in the main process.
|
|
362
|
+
|
|
363
|
+
results = self.solve_all(
|
|
364
|
+
grp, method=method, n_jobs=1,
|
|
365
|
+
n_threads=n_threads, progress_bar=progress_bar,
|
|
366
|
+
_check_wavelength=_check_wavelength, **kwargs
|
|
367
|
+
)
|
|
368
|
+
return results, self.timer, os.getpid()
|
|
369
|
+
|
|
370
|
+
@staticmethod
|
|
371
|
+
def _check_wavelength_and_mesh_resolution(problems):
|
|
372
|
+
"""Display a warning if some of the problems have a mesh resolution
|
|
373
|
+
that might not be sufficient for the given wavelength."""
|
|
374
|
+
LOG.debug("Check wavelength with mesh resolution.")
|
|
375
|
+
risky_problems = [pb for pb in problems
|
|
376
|
+
if 0.0 < pb.wavelength < pb.body.minimal_computable_wavelength]
|
|
377
|
+
nb_risky_problems = len(risky_problems)
|
|
378
|
+
if nb_risky_problems == 1:
|
|
379
|
+
pb = risky_problems[0]
|
|
380
|
+
freq_type = risky_problems[0].provided_freq_type
|
|
381
|
+
freq = pb.__getattribute__(freq_type)
|
|
382
|
+
LOG.warning(f"Mesh resolution for {pb}:\n"
|
|
383
|
+
f"The resolution of the mesh of the body {pb.body.__short_str__()} might "
|
|
384
|
+
f"be insufficient for {freq_type}={freq}.\n"
|
|
385
|
+
"This warning appears because the largest panel of this mesh "
|
|
386
|
+
f"has radius {pb.body.mesh.faces_radiuses.max():.3f} > wavelength/8."
|
|
387
|
+
)
|
|
388
|
+
elif nb_risky_problems > 1:
|
|
389
|
+
freq_type = risky_problems[0].provided_freq_type
|
|
390
|
+
freqs = np.array([float(pb.__getattribute__(freq_type)) for pb in risky_problems])
|
|
391
|
+
LOG.warning(f"Mesh resolution for {nb_risky_problems} problems:\n"
|
|
392
|
+
"The resolution of the mesh might be insufficient "
|
|
393
|
+
f"for {freq_type} ranging from {freqs.min():.3f} to {freqs.max():.3f}.\n"
|
|
394
|
+
"This warning appears when the largest panel of this mesh "
|
|
395
|
+
"has radius > wavelength/8."
|
|
396
|
+
)
|
|
397
|
+
|
|
398
|
+
@staticmethod
|
|
399
|
+
def _check_wavelength_and_irregular_frequencies(problems):
|
|
400
|
+
"""Display a warning if some of the problems might encounter irregular frequencies."""
|
|
401
|
+
LOG.debug("Check wavelength with estimated irregular frequency.")
|
|
402
|
+
risky_problems = [pb for pb in problems
|
|
403
|
+
if pb.free_surface != np.inf and
|
|
404
|
+
pb.body.first_irregular_frequency_estimate(g=pb.g) < pb.omega < np.inf]
|
|
405
|
+
nb_risky_problems = len(risky_problems)
|
|
406
|
+
if nb_risky_problems >= 1:
|
|
407
|
+
if any(pb.body.lid_mesh is None for pb in problems):
|
|
408
|
+
recommendation = "Setting a lid for the floating body is recommended."
|
|
409
|
+
else:
|
|
410
|
+
recommendation = "The lid might need to be closer to the free surface."
|
|
411
|
+
if nb_risky_problems == 1:
|
|
412
|
+
pb = risky_problems[0]
|
|
413
|
+
freq_type = risky_problems[0].provided_freq_type
|
|
414
|
+
freq = pb.__getattribute__(freq_type)
|
|
415
|
+
LOG.warning(f"Irregular frequencies for {pb}:\n"
|
|
416
|
+
f"The body {pb.body.__short_str__()} might display irregular frequencies "
|
|
417
|
+
f"for {freq_type}={freq}.\n"
|
|
418
|
+
+ recommendation
|
|
419
|
+
)
|
|
420
|
+
elif nb_risky_problems > 1:
|
|
421
|
+
freq_type = risky_problems[0].provided_freq_type
|
|
422
|
+
freqs = np.array([float(pb.__getattribute__(freq_type)) for pb in risky_problems])
|
|
423
|
+
LOG.warning(f"Irregular frequencies for {nb_risky_problems} problems:\n"
|
|
424
|
+
"Irregular frequencies might be encountered "
|
|
425
|
+
f"for {freq_type} ranging from {freqs.min():.3f} to {freqs.max():.3f}.\n"
|
|
426
|
+
+ recommendation
|
|
427
|
+
)
|
|
428
|
+
|
|
429
|
+
def _check_ram(self,problems, n_jobs = 1):
|
|
430
|
+
"""Display a warning if the RAM estimation is larger than a certain limit."""
|
|
431
|
+
LOG.debug("Check RAM estimation.")
|
|
432
|
+
psutil = silently_import_optional_dependency("psutil")
|
|
433
|
+
if psutil is None:
|
|
434
|
+
ram_limit = 8
|
|
435
|
+
else :
|
|
436
|
+
ram_limit = psutil.virtual_memory().total / (1024**3) * 0.3
|
|
437
|
+
|
|
438
|
+
if n_jobs == - 1:
|
|
439
|
+
n_jobs = os.cpu_count()
|
|
440
|
+
|
|
441
|
+
estimated_peak_memory = n_jobs*max(self.engine.compute_ram_estimation(pb) for pb in problems)
|
|
442
|
+
|
|
443
|
+
if estimated_peak_memory < 0.5:
|
|
444
|
+
LOG.info("Estimated peak RAM usage: <1 GB.")
|
|
445
|
+
|
|
446
|
+
elif estimated_peak_memory < ram_limit:
|
|
447
|
+
LOG.info(f"Estimated peak RAM usage: {int(np.ceil(estimated_peak_memory))} GB.")
|
|
448
|
+
|
|
449
|
+
else:
|
|
450
|
+
LOG.warning(f"Estimated peak RAM usage: {int(np.ceil(estimated_peak_memory))} GB.")
|
|
451
|
+
|
|
452
|
+
def fill_dataset(self, dataset, bodies, *, method=None, n_jobs=1, n_threads=None, _check_wavelength=True, progress_bar=None, **kwargs):
|
|
453
|
+
"""Solve a set of problems defined by the coordinates of an xarray dataset.
|
|
454
|
+
|
|
455
|
+
Parameters
|
|
456
|
+
----------
|
|
457
|
+
dataset : xarray Dataset
|
|
458
|
+
dataset containing the problems parameters: frequency, radiating_dof, water_depth, ...
|
|
459
|
+
bodies : FloatingBody or Multibody or list of FloatingBody or list of Multibody
|
|
460
|
+
The body or bodies involved in the problems
|
|
461
|
+
They should all have different names.
|
|
462
|
+
method: string, optional
|
|
463
|
+
select boundary integral equation used to solve the problems.
|
|
464
|
+
It is recommended to set the method more globally when initializing the solver.
|
|
465
|
+
If provided here, the value in argument of `fill_dataset` overrides the global one.
|
|
466
|
+
n_jobs: int, optional (default: 1)
|
|
467
|
+
the number of jobs to run in parallel using the optional dependency ``joblib``.
|
|
468
|
+
By defaults: do not use joblib and solve sequentially.
|
|
469
|
+
n_threads: int, optional
|
|
470
|
+
the number of threads used to solve each problem.
|
|
471
|
+
The total number of used CPU will be n_jobs×n_threads.
|
|
472
|
+
By default: use as much as possible.
|
|
473
|
+
Requires the optional dependency ``threadpoolctl`` if ``n_jobs==1``.
|
|
474
|
+
Also controlled by the environment variables ``OMP_NUM_THREADS`` and ``MKL_NUM_THREADS``.
|
|
475
|
+
progress_bar: bool, optional
|
|
476
|
+
Display a progress bar while solving.
|
|
477
|
+
If no value is provided to this method directly,
|
|
478
|
+
check whether the environment variable `CAPYTAINE_PROGRESS_BAR` is defined
|
|
479
|
+
and otherwise default to True.
|
|
480
|
+
_check_wavelength: bool, optional (default: True)
|
|
481
|
+
If True, the frequencies are compared to the mesh resolution and
|
|
482
|
+
the estimated first irregular frequency to warn the user.
|
|
483
|
+
|
|
484
|
+
Returns
|
|
485
|
+
-------
|
|
486
|
+
xarray Dataset
|
|
487
|
+
"""
|
|
488
|
+
attrs = {'start_of_computation': datetime.now().isoformat(),
|
|
489
|
+
**self.exportable_settings}
|
|
490
|
+
if method is not None: # Overrides the method in self.exportable_settings
|
|
491
|
+
attrs["method"] = method
|
|
492
|
+
problems = problems_from_dataset(dataset, bodies)
|
|
493
|
+
if 'theta' in dataset.coords:
|
|
494
|
+
results = self.solve_all(problems, keep_details=True, method=method, n_jobs=n_jobs, n_threads=n_threads, _check_wavelength=_check_wavelength, progress_bar=progress_bar)
|
|
495
|
+
kochin = kochin_data_array(results, dataset.coords['theta'])
|
|
496
|
+
dataset = assemble_dataset(results, attrs=attrs, **kwargs)
|
|
497
|
+
dataset.update(kochin)
|
|
498
|
+
else:
|
|
499
|
+
results = self.solve_all(problems, keep_details=False, method=method, n_jobs=n_jobs, n_threads=n_threads, _check_wavelength=_check_wavelength, progress_bar=progress_bar)
|
|
500
|
+
dataset = assemble_dataset(results, attrs=attrs, **kwargs)
|
|
501
|
+
return dataset
|
|
502
|
+
|
|
503
|
+
|
|
504
|
+
def compute_potential(self, points, result):
|
|
505
|
+
"""Compute the value of the potential at given points for a previously solved potential flow problem.
|
|
506
|
+
|
|
507
|
+
Parameters
|
|
508
|
+
----------
|
|
509
|
+
points: array of shape (3,) or (N, 3), or 3-ple of arrays returned by meshgrid, or MeshLike object
|
|
510
|
+
Coordinates of the point(s) at which the potential should be computed
|
|
511
|
+
result: LinearPotentialFlowResult
|
|
512
|
+
The return of the BEM solver
|
|
513
|
+
|
|
514
|
+
Returns
|
|
515
|
+
-------
|
|
516
|
+
complex-valued array of shape (1,) or (N,) or (nx, ny, nz) or (mesh.nb_faces,) depending of the kind of input
|
|
517
|
+
The value of the potential at the points
|
|
518
|
+
|
|
519
|
+
Raises
|
|
520
|
+
------
|
|
521
|
+
Exception: if the :code:`LinearPotentialFlowResult` object given as input does not contain the source distribution.
|
|
522
|
+
"""
|
|
523
|
+
gf_params = dict(free_surface=result.free_surface, water_depth=result.water_depth, wavenumber=result.encounter_wavenumber)
|
|
524
|
+
|
|
525
|
+
points, output_shape = _normalize_points(points)
|
|
526
|
+
if result.sources is None:
|
|
527
|
+
raise Exception(f"""The values of the sources of {result} cannot been found.
|
|
528
|
+
They probably have not been stored by the solver because the option keep_details=True have not been set or the direct method has been used.
|
|
529
|
+
Please re-run the resolution with the indirect method and keep_details=True.""")
|
|
530
|
+
|
|
531
|
+
with self.timer(step="Post-processing potential"):
|
|
532
|
+
S = self.engine.build_S_matrix(points, result.body.mesh_including_lid, **gf_params)
|
|
533
|
+
potential = S @ result.sources # Sum the contributions of all panels in the mesh
|
|
534
|
+
return potential.reshape(output_shape)
|
|
535
|
+
|
|
536
|
+
def _compute_potential_gradient(self, points, result):
|
|
537
|
+
points, output_shape = _normalize_points(points, keep_mesh=True)
|
|
538
|
+
# keep_mesh, because we need the normal vectors associated with each collocation points to compute the fullK matrix
|
|
539
|
+
|
|
540
|
+
if result.sources is None:
|
|
541
|
+
raise Exception(f"""The values of the sources of {result} cannot been found.
|
|
542
|
+
They probably have not been stored by the solver because the option keep_details=True have not been set.
|
|
543
|
+
Please re-run the resolution with this option.""")
|
|
544
|
+
|
|
545
|
+
gf_params = dict(free_surface=result.free_surface, water_depth=result.water_depth, wavenumber=result.encounter_wavenumber)
|
|
546
|
+
with self.timer(step="Post-processing velocity"):
|
|
547
|
+
gradG = self.engine.build_fullK_matrix(points, result.body.mesh_including_lid, **gf_params)
|
|
548
|
+
velocities = np.einsum('ijk,j->ik', gradG, result.sources) # Sum the contributions of all panels in the mesh
|
|
549
|
+
return velocities.reshape((*output_shape, 3))
|
|
550
|
+
|
|
551
|
+
def compute_velocity(self, points, result):
|
|
552
|
+
"""Compute the value of the velocity vector at given points for a previously solved potential flow problem.
|
|
553
|
+
|
|
554
|
+
Parameters
|
|
555
|
+
----------
|
|
556
|
+
points: array of shape (3,) or (N, 3), or 3-ple of arrays returned by meshgrid, or MeshLike object
|
|
557
|
+
Coordinates of the point(s) at which the velocity should be computed
|
|
558
|
+
result: LinearPotentialFlowResult
|
|
559
|
+
The return of the BEM solver
|
|
560
|
+
|
|
561
|
+
Returns
|
|
562
|
+
-------
|
|
563
|
+
complex-valued array of shape (3,) or (N,, 3) or (nx, ny, nz, 3) or (mesh.nb_faces, 3) depending of the kind of input
|
|
564
|
+
The value of the velocity at the points
|
|
565
|
+
|
|
566
|
+
Raises
|
|
567
|
+
------
|
|
568
|
+
Exception: if the :code:`LinearPotentialFlowResult` object given as input does not contain the source distribution.
|
|
569
|
+
"""
|
|
570
|
+
nabla_phi = self._compute_potential_gradient(points, result)
|
|
571
|
+
if result.forward_speed != 0.0:
|
|
572
|
+
nabla_phi[..., 0] -= result.forward_speed
|
|
573
|
+
return nabla_phi
|
|
574
|
+
|
|
575
|
+
def compute_pressure(self, points, result):
|
|
576
|
+
"""Compute the value of the pressure at given points for a previously solved potential flow problem.
|
|
577
|
+
|
|
578
|
+
Parameters
|
|
579
|
+
----------
|
|
580
|
+
points: array of shape (3,) or (N, 3), or 3-ple of arrays returned by meshgrid, or MeshLike object
|
|
581
|
+
Coordinates of the point(s) at which the pressure should be computed
|
|
582
|
+
result: LinearPotentialFlowResult
|
|
583
|
+
The return of the BEM solver
|
|
584
|
+
|
|
585
|
+
Returns
|
|
586
|
+
-------
|
|
587
|
+
complex-valued array of shape (1,) or (N,) or (nx, ny, nz) or (mesh.nb_faces,) depending of the kind of input
|
|
588
|
+
The value of the pressure at the points
|
|
589
|
+
|
|
590
|
+
Raises
|
|
591
|
+
------
|
|
592
|
+
Exception: if the :code:`LinearPotentialFlowResult` object given as input does not contain the source distribution.
|
|
593
|
+
"""
|
|
594
|
+
if result.forward_speed != 0:
|
|
595
|
+
pressure = 1j * result.encounter_omega * result.rho * self.compute_potential(points, result)
|
|
596
|
+
nabla_phi = self._compute_potential_gradient(points, result)
|
|
597
|
+
pressure += result.rho * result.forward_speed * nabla_phi[..., 0]
|
|
598
|
+
else:
|
|
599
|
+
pressure = 1j * result.omega * result.rho * self.compute_potential(points, result)
|
|
600
|
+
return pressure
|
|
601
|
+
|
|
602
|
+
|
|
603
|
+
def compute_free_surface_elevation(self, points, result):
|
|
604
|
+
"""Compute the value of the free surface elevation at given points for a previously solved potential flow problem.
|
|
605
|
+
|
|
606
|
+
Parameters
|
|
607
|
+
----------
|
|
608
|
+
points: array of shape (2,) or (N, 2), or 2-ple of arrays returned by meshgrid, or MeshLike object
|
|
609
|
+
Coordinates of the point(s) at which the free surface elevation should be computed
|
|
610
|
+
result: LinearPotentialFlowResult
|
|
611
|
+
The return of the BEM solver
|
|
612
|
+
|
|
613
|
+
Returns
|
|
614
|
+
-------
|
|
615
|
+
complex-valued array of shape (1,) or (N,) or (nx, ny, nz) or (mesh.nb_faces,) depending of the kind of input
|
|
616
|
+
The value of the free surface elevation at the points
|
|
617
|
+
|
|
618
|
+
Raises
|
|
619
|
+
------
|
|
620
|
+
Exception: if the :code:`LinearPotentialFlowResult` object given as input does not contain the source distribution.
|
|
621
|
+
"""
|
|
622
|
+
points, output_shape = _normalize_free_surface_points(points)
|
|
623
|
+
|
|
624
|
+
if result.forward_speed != 0:
|
|
625
|
+
fs_elevation = -1/result.g * (-1j*result.encounter_omega) * self.compute_potential(points, result)
|
|
626
|
+
nabla_phi = self._compute_potential_gradient(points, result)
|
|
627
|
+
fs_elevation += -1/result.g * result.forward_speed * nabla_phi[..., 0]
|
|
628
|
+
else:
|
|
629
|
+
fs_elevation = -1/result.g * (-1j*result.omega) * self.compute_potential(points, result)
|
|
630
|
+
|
|
631
|
+
return fs_elevation.reshape(output_shape)
|
|
632
|
+
|
|
633
|
+
|
|
634
|
+
## Legacy
|
|
635
|
+
|
|
636
|
+
def get_potential_on_mesh(self, result, mesh, chunk_size=50):
|
|
637
|
+
"""Compute the potential on a mesh for the potential field of a previously solved problem.
|
|
638
|
+
Since the interaction matrix does not need to be computed in full to compute the matrix-vector product,
|
|
639
|
+
only a few lines are evaluated at a time to reduce the memory cost of the operation.
|
|
640
|
+
|
|
641
|
+
The newer method :code:`compute_potential` should be preferred in the future.
|
|
642
|
+
|
|
643
|
+
Parameters
|
|
644
|
+
----------
|
|
645
|
+
result : LinearPotentialFlowResult
|
|
646
|
+
the return of the BEM solver
|
|
647
|
+
mesh : MeshLike
|
|
648
|
+
a mesh
|
|
649
|
+
chunk_size: int, optional
|
|
650
|
+
Number of lines to compute in the matrix.
|
|
651
|
+
(legacy, should be passed as an engine setting instead).
|
|
652
|
+
|
|
653
|
+
Returns
|
|
654
|
+
-------
|
|
655
|
+
array of shape (mesh.nb_faces,)
|
|
656
|
+
potential on the faces of the mesh
|
|
657
|
+
|
|
658
|
+
Raises
|
|
659
|
+
------
|
|
660
|
+
Exception: if the :code:`Result` object given as input does not contain the source distribution.
|
|
661
|
+
"""
|
|
662
|
+
LOG.info(f"Compute potential on {mesh.name} for {result}.")
|
|
663
|
+
|
|
664
|
+
if result.sources is None:
|
|
665
|
+
raise Exception(f"""The values of the sources of {result} cannot been found.
|
|
666
|
+
They probably have not been stored by the solver because the option keep_details=True have not been set or the direct method has been used.
|
|
667
|
+
Please re-run the resolution with the indirect method and keep_details=True.""")
|
|
668
|
+
|
|
669
|
+
gf_params = dict(free_surface=result.free_surface, water_depth=result.water_depth, wavenumber=result.encounter_wavenumber)
|
|
670
|
+
if chunk_size > mesh.nb_faces:
|
|
671
|
+
S = self.engine.build_S_matrix(mesh, result.body.mesh_including_lid, **gf_params)
|
|
672
|
+
phi = S @ result.sources
|
|
673
|
+
|
|
674
|
+
else:
|
|
675
|
+
phi = np.empty((mesh.nb_faces,), dtype=np.complex128)
|
|
676
|
+
for i in range(0, mesh.nb_faces, chunk_size):
|
|
677
|
+
faces_to_extract = list(range(i, min(i+chunk_size, mesh.nb_faces)))
|
|
678
|
+
S = self.engine.build_S_matrix(
|
|
679
|
+
mesh.extract_faces(faces_to_extract),
|
|
680
|
+
result.body.mesh_including_lid,
|
|
681
|
+
**gf_params
|
|
682
|
+
)
|
|
683
|
+
phi[i:i+chunk_size] = S @ result.sources
|
|
684
|
+
|
|
685
|
+
LOG.debug(f"Done computing potential on {mesh.name} for {result}.")
|
|
686
|
+
|
|
687
|
+
return phi
|
|
688
|
+
|
|
689
|
+
def get_free_surface_elevation(self, result, free_surface, keep_details=False):
|
|
690
|
+
"""Compute the elevation of the free surface on a mesh for a previously solved problem.
|
|
691
|
+
|
|
692
|
+
The newer method :code:`compute_free_surface_elevation` should be preferred in the future.
|
|
693
|
+
|
|
694
|
+
Parameters
|
|
695
|
+
----------
|
|
696
|
+
result : LinearPotentialFlowResult
|
|
697
|
+
the return of the solver
|
|
698
|
+
free_surface : FreeSurface
|
|
699
|
+
a meshed free surface
|
|
700
|
+
keep_details : bool, optional
|
|
701
|
+
if True, keep the free surface elevation in the LinearPotentialFlowResult (default:False)
|
|
702
|
+
|
|
703
|
+
Returns
|
|
704
|
+
-------
|
|
705
|
+
array of shape (free_surface.nb_faces,)
|
|
706
|
+
the free surface elevation on each faces of the meshed free surface
|
|
707
|
+
|
|
708
|
+
Raises
|
|
709
|
+
------
|
|
710
|
+
Exception: if the :code:`Result` object given as input does not contain the source distribution.
|
|
711
|
+
"""
|
|
712
|
+
if result.forward_speed != 0.0:
|
|
713
|
+
raise NotImplementedError("For free surface elevation with forward speed, please use the `compute_free_surface_elevation` method.")
|
|
714
|
+
|
|
715
|
+
fs_elevation = 1j*result.omega/result.g * self.get_potential_on_mesh(result, free_surface.mesh)
|
|
716
|
+
if keep_details:
|
|
717
|
+
result.fs_elevation[free_surface] = fs_elevation
|
|
718
|
+
return fs_elevation
|