bsplot 0.0.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. bsplot/__init__.py +23 -0
  2. bsplot/anat.py +55 -0
  3. bsplot/animate.py +194 -0
  4. bsplot/bioicons.py +777 -0
  5. bsplot/brain.py +188 -0
  6. bsplot/colors.py +1935 -0
  7. bsplot/data/HCP_avg-SC.txt +379 -0
  8. bsplot/data/MNI152.rh.pial +0 -0
  9. bsplot/data/STN_lh.nii.gz +0 -0
  10. bsplot/data/STN_rh.nii.gz +0 -0
  11. bsplot/data/__init__.py +22 -0
  12. bsplot/data/left_electrode.ply +257270 -0
  13. bsplot/data/parcellations/HCP-MMP1.L.label.gii +442 -0
  14. bsplot/data/parcellations/HCP-MMP1.R.label.gii +442 -0
  15. bsplot/data/parcellations/code/split_hcpmmp1.sh +4 -0
  16. bsplot/data/right_electrode.ply +257270 -0
  17. bsplot/data/surface.py +112 -0
  18. bsplot/data/tpl-MNI152NLin2009b_atlas-hcpmmp1_desc-ordered_dseg.nii.gz +0 -0
  19. bsplot/figure.py +177 -0
  20. bsplot/graph/__init__.py +31 -0
  21. bsplot/graph/edges.py +312 -0
  22. bsplot/graph/flowchart.py +762 -0
  23. bsplot/graph/layout.py +201 -0
  24. bsplot/graph/network.py +974 -0
  25. bsplot/graph/nodes.py +452 -0
  26. bsplot/panels.py +110 -0
  27. bsplot/scientific_color_maps/__init__.py +0 -0
  28. bsplot/scientific_color_maps/_sync_from_zenodo_download.sh +1 -0
  29. bsplot/scientific_color_maps/batlowK.txt +256 -0
  30. bsplot/scientific_color_maps/batlowW.txt +256 -0
  31. bsplot/scientific_color_maps/cyclic/bamO.txt +256 -0
  32. bsplot/scientific_color_maps/cyclic/brocO.txt +256 -0
  33. bsplot/scientific_color_maps/cyclic/corkO.txt +256 -0
  34. bsplot/scientific_color_maps/cyclic/romaO.txt +256 -0
  35. bsplot/scientific_color_maps/cyclic/vikO.txt +256 -0
  36. bsplot/scientific_color_maps/diverging/bam.txt +256 -0
  37. bsplot/scientific_color_maps/diverging/berlin.txt +256 -0
  38. bsplot/scientific_color_maps/diverging/broc.txt +256 -0
  39. bsplot/scientific_color_maps/diverging/cork.txt +256 -0
  40. bsplot/scientific_color_maps/diverging/lisbon.txt +256 -0
  41. bsplot/scientific_color_maps/diverging/managua.txt +256 -0
  42. bsplot/scientific_color_maps/diverging/roma.txt +256 -0
  43. bsplot/scientific_color_maps/diverging/tofino.txt +256 -0
  44. bsplot/scientific_color_maps/diverging/vanimo.txt +256 -0
  45. bsplot/scientific_color_maps/diverging/vik.txt +256 -0
  46. bsplot/scientific_color_maps/multisequential/bukavu.txt +256 -0
  47. bsplot/scientific_color_maps/multisequential/fes.txt +256 -0
  48. bsplot/scientific_color_maps/multisequential/oleron.txt +256 -0
  49. bsplot/scientific_color_maps/naviaW.txt +256 -0
  50. bsplot/scientific_color_maps/sequential/acton.txt +256 -0
  51. bsplot/scientific_color_maps/sequential/bamako.txt +256 -0
  52. bsplot/scientific_color_maps/sequential/batlow.txt +256 -0
  53. bsplot/scientific_color_maps/sequential/bilbao.txt +256 -0
  54. bsplot/scientific_color_maps/sequential/buda.txt +256 -0
  55. bsplot/scientific_color_maps/sequential/davos.txt +256 -0
  56. bsplot/scientific_color_maps/sequential/devon.txt +256 -0
  57. bsplot/scientific_color_maps/sequential/glasgow.txt +256 -0
  58. bsplot/scientific_color_maps/sequential/grayC.txt +256 -0
  59. bsplot/scientific_color_maps/sequential/hawaii.txt +256 -0
  60. bsplot/scientific_color_maps/sequential/imola.txt +256 -0
  61. bsplot/scientific_color_maps/sequential/lajolla.txt +256 -0
  62. bsplot/scientific_color_maps/sequential/lapaz.txt +256 -0
  63. bsplot/scientific_color_maps/sequential/lipari.txt +256 -0
  64. bsplot/scientific_color_maps/sequential/navia.txt +256 -0
  65. bsplot/scientific_color_maps/sequential/nuuk.txt +256 -0
  66. bsplot/scientific_color_maps/sequential/oslo.txt +256 -0
  67. bsplot/scientific_color_maps/sequential/tokyo.txt +256 -0
  68. bsplot/scientific_color_maps/sequential/turku.txt +256 -0
  69. bsplot/streamlines.py +314 -0
  70. bsplot/style.py +791 -0
  71. bsplot/styles/black.mplstyle +78 -0
  72. bsplot/styles/bss.mplstyle +50 -0
  73. bsplot/styles/bwcomp.mplstyle +30 -0
  74. bsplot/styles/nature.mplstyle +57 -0
  75. bsplot/styles/transparent.mplstyle +16 -0
  76. bsplot/styles/tvbo.mplstyle +57 -0
  77. bsplot/surface.py +2370 -0
  78. bsplot/templates.py +270 -0
  79. bsplot/text.py +199 -0
  80. bsplot/text2obj.py +59 -0
  81. bsplot/timeseries.py +10 -0
  82. bsplot/utils.py +13 -0
  83. bsplot/volume.py +958 -0
  84. bsplot-0.0.2.dist-info/METADATA +60 -0
  85. bsplot-0.0.2.dist-info/RECORD +89 -0
  86. bsplot-0.0.2.dist-info/WHEEL +5 -0
  87. bsplot-0.0.2.dist-info/entry_points.txt +2 -0
  88. bsplot-0.0.2.dist-info/licenses/LICENSE +193 -0
  89. bsplot-0.0.2.dist-info/top_level.txt +1 -0
@@ -0,0 +1,78 @@
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+ # --- Axes ---
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+ axes.linewidth: 1.5
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+ axes.edgecolor: white
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+ axes.spines.top: False
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+ axes.spines.right: False
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+ axes.autolimit_mode: data
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+ axes.titlesize: 10
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+ axes.labelsize: 9
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+ axes.labelpad: 4
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+ axes.titlepad: 6
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+ axes.facecolor: black
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+
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+ # --- Font ---
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+ font.size: 9
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+ font.family: sans-serif
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+ font.sans-serif: Helvetica, Arial, DejaVu Sans
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+ text.color: white
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+ axes.labelcolor: white
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+ axes.titlecolor: white
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+
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+ # --- Ticks ---
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+ xtick.direction: out
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+ ytick.direction: out
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+ xtick.major.size: 6
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+ ytick.major.size: 6
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+ xtick.major.width: 1.5
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+ ytick.major.width: 1.5
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+ xtick.minor.visible: False
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+ ytick.minor.visible: False
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+ xtick.bottom: True
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+ ytick.left: True
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+ xtick.labelsize: 8
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+ ytick.labelsize: 8
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+ xtick.color: white
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+ ytick.color: white
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+
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+ # --- Grid ---
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+ axes.grid: False
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+ grid.linestyle: -
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+ grid.linewidth: 0.5
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+ grid.alpha: 0.3
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+ grid.color: 0.4
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+
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+ # --- Figure ---
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+ figure.dpi: 150
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+ figure.figsize: 7.2, 5.0
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+ figure.constrained_layout.use: True
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+ figure.facecolor: black
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+ figure.edgecolor: black
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+
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+ # --- Savefig ---
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+ savefig.dpi: 300
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+ savefig.bbox: tight
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+ savefig.pad_inches: 0.05
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+ savefig.format: pdf
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+ savefig.facecolor: black
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+ savefig.edgecolor: black
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+ savefig.transparent: False
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+
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+ # --- Lines and markers ---
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+ lines.linewidth: 1.5
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+ lines.markersize: 4
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+
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+ # --- Legend ---
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+ legend.frameon: True
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+ legend.fontsize: 8
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+ legend.loc: best
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+ legend.facecolor: 0.07
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+ legend.edgecolor: white
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+ legend.framealpha: 0.8
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+ legend.labelcolor: white
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+
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+ # --- Patches ---
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+ patch.edgecolor: white
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+ patch.force_edgecolor: True
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+
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+ # --- Color cycle ---
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+ axes.prop_cycle: cycler(color=["#FFFFFF", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7"])
@@ -0,0 +1,50 @@
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+ # Font settings for Arial or Helvetica
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+ font.family: Arial # Or Helvetica if Arial is unavailable
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+ font.size: 10 # Font size 5-7 pt as required for figures
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+ text.color: black
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+
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+
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+ # Color-safe and distinct color palette, avoiding red and green
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+ axes.prop_cycle: cycler(color=["#000000", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7"])
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+
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+ # Grid and tick settings
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+ axes.grid: False
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+ axes.facecolor: white
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+ axes.edgecolor: black
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+ axes.spines.right: False
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+ axes.spines.top: False
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+ axes.linewidth: 1
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+ xtick.major.width: 1
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+ ytick.major.width: 1
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+ axes.labelcolor: black # White font color for labels
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+ axes.titlecolor: black # White font color for titles
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+
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+
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+ axes.titlesize: medium
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+ axes.labelpad: 2
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+
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+ xtick.direction: out
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+ ytick.direction: out
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+ xtick.color: black # White font color for x-ticks
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+ ytick.color: black # White font color for y-ticks
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+
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+
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+ # Figure dimensions for journal specifications (double column by default)
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+ figure.figsize: 7.09, 4.38 # Width for double-column figures, max height
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+
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+ # Line settings
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+ lines.antialiased: True
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+
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+ # Background color for figures
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+ figure.facecolor: white
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+ figure.edgecolor: none # Transparent edges for cleaner vector graphics
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+
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+ # File export settings (vector-based preferred)
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+ savefig.format: pdf # Default to PDF for vector graphics
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+ savefig.transparent: True
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+ savefig.bbox: tight
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+ savefig.dpi: 1000
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+
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+ # Text settings
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+ text.usetex: False # Set to True if using LaTeX-rendered text for symbols
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+ text.parse_math: True
@@ -0,0 +1,30 @@
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+ # Style module: bwcomp (black-white compatible)
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+ # Uses #767676 grey for all chrome — the mathematically optimal grey
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+ # that maximises minimum WCAG contrast against both black and white
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+ # (~4.54:1 each, meeting WCAG AA).
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+ # Combine with other styles:
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+ # bsplot.style.use("bwcomp")
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+ # bsplot.style.use("tvbo-bwcomp")
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+ # bsplot.style.use("bwcomp-transparent")
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+ # bsplot.style.use("tvbo-bwcomp-transparent")
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+
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+ # --- Colors ---
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+ text.color: 767676
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+ axes.edgecolor: 767676
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+ axes.labelcolor: 767676
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+ axes.titlecolor: 767676
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+ xtick.color: 767676
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+ ytick.color: 767676
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+
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+ # --- Grid ---
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+ grid.color: 767676
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+
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+ # --- Legend ---
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+ legend.edgecolor: 767676
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+ legend.labelcolor: 767676
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+
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+ # --- Patches ---
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+ patch.edgecolor: 767676
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+
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+ # --- Color cycle (grey-first, then colorblind-safe) ---
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+ axes.prop_cycle: cycler(color=["#767676", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7"])
@@ -0,0 +1,57 @@
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+ # --- Axes ---
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+ axes.linewidth: 1.5
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+ axes.edgecolor: black
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+ axes.spines.top: False
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+ axes.spines.right: False
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+ axes.autolimit_mode: data
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+ axes.titlesize: 10
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+ axes.labelsize: 9
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+ axes.labelpad: 4
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+ axes.titlepad: 6
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+
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+ # --- Font ---
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+ font.size: 9
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+ font.family: sans-serif
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+ font.sans-serif: Helvetica, Arial, DejaVu Sans
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+
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+ # --- Ticks ---
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+ xtick.direction: out
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+ ytick.direction: out
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+ xtick.major.size: 6
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+ ytick.major.size: 6
22
+ xtick.major.width: 1.5
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+ ytick.major.width: 1.5
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+ xtick.minor.visible: False
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+ ytick.minor.visible: False
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+ xtick.bottom: True
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+ ytick.left: True
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+ xtick.labelsize: 8
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+ ytick.labelsize: 8
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+
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+ # --- Grid ---
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+ grid.linestyle: -
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+ grid.linewidth: 0.5
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+ grid.alpha: 0.3
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+ grid.color: grey
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+
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+ # --- Figure ---
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+ figure.dpi: 300
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+ figure.figsize: 7.2, 5.0
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+
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+ # --- Savefig ---
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+ savefig.dpi: 300
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+ savefig.bbox: tight
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+ savefig.pad_inches: 0.05
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+ savefig.format: pdf
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+
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+ # --- Lines and markers ---
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+ lines.linewidth: 1.5
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+ lines.markersize: 4
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+
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+ # --- Legend ---
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+ legend.frameon: True
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+ legend.fontsize: 8
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+ legend.loc: best
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+
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+ # --- Color cycle ---
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+ axes.prop_cycle: cycler("color", ["black", "#1b9e77", "#d95f02", "#7570b3", "#e7298a", "#66a61e"])
@@ -0,0 +1,16 @@
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+ # Style module: transparent
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+ # Removes all background patches (axes + figure). Combine with any base style:
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+ # bsplot.style.use("black-transparent")
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+ # bsplot.style.use("tvbo-transparent")
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+
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+ # --- Axes ---
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+ axes.facecolor: none
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+
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+ # --- Figure ---
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+ figure.facecolor: none
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+ figure.edgecolor: none
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+
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+ # --- Savefig ---
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+ savefig.facecolor: none
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+ savefig.edgecolor: none
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+ savefig.transparent: True
@@ -0,0 +1,57 @@
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+ # --- Axes ---
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+ axes.linewidth: 1.5
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+ axes.edgecolor: black
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+ axes.spines.top: False
5
+ axes.spines.right: False
6
+ axes.autolimit_mode: data
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+ axes.titlesize: 10
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+ axes.labelsize: 9
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+ axes.labelpad: 4
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+ axes.titlepad: 6
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+
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+ # --- Font ---
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+ font.size: 9
14
+ font.family: sans-serif
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+ font.sans-serif: Helvetica, Arial, DejaVu Sans
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+
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+ # --- Ticks ---
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+ xtick.direction: out
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+ ytick.direction: out
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+ xtick.major.size: 6
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+ ytick.major.size: 6
22
+ xtick.major.width: 1.5
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+ ytick.major.width: 1.5
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+ xtick.minor.visible: False
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+ ytick.minor.visible: False
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+ xtick.bottom: True
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+ ytick.left: True
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+ xtick.labelsize: 8
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+ ytick.labelsize: 8
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+
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+ # --- Grid ---
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+ grid.linestyle: -
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+ grid.linewidth: 0.5
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+ grid.alpha: 0.3
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+ grid.color: grey
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+
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+ # --- Figure ---
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+ figure.dpi: 300
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+ figure.figsize: 7.2, 5.0
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+
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+ # --- Savefig ---
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+ savefig.dpi: 300
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+ savefig.bbox: tight
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+ savefig.pad_inches: 0.05
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+ savefig.format: pdf
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+
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+ # --- Lines and markers ---
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+ lines.linewidth: 1.5
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+ lines.markersize: 4
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+
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+ # --- Legend ---
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+ legend.frameon: True
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+ legend.fontsize: 8
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+ legend.loc: best
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+
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+ # --- Color cycle ---
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+ axes.prop_cycle: cycler(color=["#000000", "#440154", "#414487", "#2a788e", "#22a884", "#7ad151", "#fde725"])