bmtool 0.5.3__py3-none-any.whl → 0.5.5__py3-none-any.whl

bmtool/util/util.py

@@ -611,7 +611,11 @@ def connection_totals(config=None,nodes=None,edges=None,sources=[],targets=[],si
 
         total = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)]
         if include_gap == False:
-            total = total[total['is_gap_junction'] != True]
+            try: 
+                cons = cons[cons['is_gap_junction'] != True]
+            except:
+                raise Exception("no gap junctions found to drop from connections")
+            
         total = total.count()
         total = total.source_node_id # may not be the best way to pick
         return total
@@ -632,7 +636,11 @@ def percent_connections(config=None,nodes=None,edges=None,sources=[],targets=[],
 
         cons = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)]
         if include_gap == False:
-            cons = cons[cons['is_gap_junction'] != True]
+            try: 
+                cons = cons[cons['is_gap_junction'] != True]
+            except:
+                raise Exception("no gap junctions found to drop from connections")
+            
         total_cons = cons.count().source_node_id
         # to determine reciprocal connectivity
         # create a copy and flip source/dest
@@ -685,7 +693,10 @@ def connection_divergence(config=None,nodes=None,edges=None,sources=[],targets=[
 
         cons = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)]
         if include_gap == False:
-            cons = cons[cons['is_gap_junction'] != True]
+            try: 
+                cons = cons[cons['is_gap_junction'] != True]
+            except:
+                raise Exception("no gap junctions found to drop from connections")
 
         if convergence:
             if method == 'min':
@@ -739,7 +750,10 @@ def gap_junction_connections(config=None,nodes=None,edges=None,sources=[],target
         cons = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)] 
         #print(cons)
         
-        cons = cons[cons['is_gap_junction'] == True] #only gap_junctions
+        try: 
+            cons = cons[cons['is_gap_junction'] != True]
+        except:
+            raise Exception("no gap junctions found to drop from connections")
         mean = cons['target_node_id'].value_counts().mean()
         std = cons['target_node_id'].value_counts().std()
         return (round(mean,2)), (round(std,2))
@@ -755,7 +769,11 @@ def gap_junction_connections(config=None,nodes=None,edges=None,sources=[],target
 
         cons = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)]
         #add functionality that shows only the one's with gap_junctions
-        cons = cons[cons['is_gap_junction'] == True]
+        try: 
+            cons = cons[cons['is_gap_junction'] != True]
+        except:
+            raise Exception("no gap junctions found to drop from connections")
+        
         total_cons = cons.count().source_node_id
 
         num_sources = s_list[source_id_type].value_counts().sort_index().loc[source_id]
@@ -775,10 +793,6 @@ def gap_junction_percent_connections(config=None,nodes=None,edges=None,sources=[
     import pandas as pd
     
         
-        
-    
-    
-        
     
 def connection_probabilities(config=None,nodes=None,edges=None,sources=[],
     targets=[],sids=[],tids=[],prepend_pop=True,dist_X=True,dist_Y=True,dist_Z=True,num_bins=10,include_gap=True):
@@ -857,7 +871,10 @@ def connection_probabilities(config=None,nodes=None,edges=None,sources=[],
 
         relevant_edges = edges[(edges[source_id_type] == source_id) & (edges[target_id_type]==target_id)]
         if include_gap == False:
-            relevant_edges = relevant_edges[relevant_edges['is_gap_junction'] != True]
+            try: 
+                relevant_edges = relevant_edges[relevant_edges['is_gap_junction'] != True]
+            except:
+                raise Exception("no gap junctions found to drop from connections")
         connected_distances = eudist(relevant_edges,dist_X,dist_Y,dist_Z).values.tolist()
         if len(connected_distances)>0:
             if connected_distances[0]==0:

{bmtool-0.5.3.dist-info → bmtool-0.5.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bmtool
-Version: 0.5.3
+Version: 0.5.5
 Summary: BMTool
 Home-page: https://github.com/cyneuro/bmtool
 Download-URL: 
@@ -28,7 +28,8 @@ Requires-Dist: numpy
 Requires-Dist: pandas
 Requires-Dist: questionary
 Requires-Dist: pynmodlt
-Requires-Dist: plotly
+Requires-Dist: xarray
+Requires-Dist: fooof
 
 # bmtool
 A collection of modules to make developing [Neuron](https://www.neuron.yale.edu/neuron/) and [BMTK](https://alleninstitute.github.io/bmtk/) models easier.

{bmtool-0.5.3.dist-info → bmtool-0.5.5.dist-info}/RECORD

@@ -1,22 +1,24 @@
+bmtool/SLURM.py,sha256=8XbzNLIQfE_lNRd_Z8ya2PEDT4TqhVnDZkil-ckLUCU,11508
 bmtool/__init__.py,sha256=ZStTNkAJHJxG7Pwiy5UgCzC4KlhMS5pUNPtUJZVwL_Y,136
 bmtool/__main__.py,sha256=TmFkmDxjZ6250nYD4cgGhn-tbJeEm0u-EMz2ajAN9vE,650
-bmtool/bmplot.py,sha256=MiUJ4KoN2v285en0aBdrTqrWIaZJEnb2DPzS3kYaCdM,39680
-bmtool/connectors.py,sha256=t8L25eb19vZgCduWW8fJFSrEyUQ4_zGNaENMomw0d0Q,66376
-bmtool/graphs.py,sha256=j6xEXSFCoeh3mdoyXAKEjWRk8oFbNAesAbddmzAMIs0,5752
+bmtool/bmplot.py,sha256=p39s3SwXvG1D7ujYwY5zCmeUql2epnzLKqXZMBn_vjo,43511
+bmtool/connectors.py,sha256=RPQGFfefKxJxu5sM6uge-RKHvLAE96EVFh8xXj8HR0A,71560
+bmtool/graphs.py,sha256=K8BiughRUeXFVvAgo8UzrwpSClIVg7UfmIcvtEsEsk0,6020
 bmtool/manage.py,sha256=_lCU0qBQZ4jSxjzAJUd09JEetb--cud7KZgxQFbLGSY,657
 bmtool/plot_commands.py,sha256=Tqujyf0c0u8olhiHOMwgUSJXIIE1hgjv6otb25G9cA0,12298
-bmtool/singlecell.py,sha256=2kepmupsUs_QVPHmH9GURvmUyYCNBSvF1G1_6lFjDyM,24965
+bmtool/singlecell.py,sha256=Q4poQvG9fw0jlyMmHFzbRPrpcEkPz5MKS8Guuo73Bzs,26849
+bmtool/synapses.py,sha256=FD_WKXd6rXEZGVbcaU6k4h9ufrjt742V6sWOK5Io32Q,26782
 bmtool/debug/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/debug/commands.py,sha256=AwtcR7BUUheM0NxvU1Nu234zCdpobhJv5noX8x5K2vY,583
 bmtool/debug/debug.py,sha256=xqnkzLiH3s-tS26Y5lZZL62qR2evJdi46Gud-HzxEN4,207
 bmtool/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/util/commands.py,sha256=zJF-fiLk0b8LyzHDfvewUyS7iumOxVnj33IkJDzux4M,64396
-bmtool/util/util.py,sha256=J9fA73DnPF8Kp8CWONDFCuNza9e_3PNTd0jXuVb5iFs,56060
+bmtool/util/util.py,sha256=24E5rUoDU86nqypDF4uZJkuJKO1BrwrQE8lZzAxu1kw,56770
 bmtool/util/neuron/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bmtool/util/neuron/celltuner.py,sha256=xSRpRN6DhPFz4q5buq_W8UmsD7BbUrkzYBEbKVloYss,87194
-bmtool-0.5.3.dist-info/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
-bmtool-0.5.3.dist-info/METADATA,sha256=zEDBcXW6HyIngsb6RXAg17wHiDJ1-tM4PlJk7M21H74,24084
-bmtool-0.5.3.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-bmtool-0.5.3.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
-bmtool-0.5.3.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
-bmtool-0.5.3.dist-info/RECORD,,
+bmtool-0.5.5.dist-info/LICENSE,sha256=qrXg2jj6kz5d0EnN11hllcQt2fcWVNumx0xNbV05nyM,1068
+bmtool-0.5.5.dist-info/METADATA,sha256=aRwr0X8bt33WJDcPh6Js-YULLKSfTlD_nPsMn1bSZTs,24105
+bmtool-0.5.5.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+bmtool-0.5.5.dist-info/entry_points.txt,sha256=0-BHZ6nUnh0twWw9SXNTiRmKjDnb1VO2DfG_-oprhAc,45
+bmtool-0.5.5.dist-info/top_level.txt,sha256=gpd2Sj-L9tWbuJEd5E8C8S8XkNm5yUE76klUYcM-eWM,7
+bmtool-0.5.5.dist-info/RECORD,,

{bmtool-0.5.3.dist-info → bmtool-0.5.5.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (75.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any