biotite 0.39.0__cp312-cp312-win_amd64.whl → 0.41.0__cp312-cp312-win_amd64.whl

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: biotite
-Version: 0.39.0
+Version: 0.41.0
 Summary: A comprehensive library for computational molecular biology
 Author: The Biotite contributors
 License: BSD 3-Clause License
@@ -48,11 +48,11 @@ Classifier: Operating System :: Microsoft :: Windows
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Requires-Python: >=3.7
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 License-File: LICENSE.rst
 Requires-Dist: requests >=2.12
-Requires-Dist: numpy >=1.14.5
+Requires-Dist: numpy <=2.0,>=1.14.5
 Requires-Dist: msgpack >=0.5.6
 Requires-Dist: networkx >=2.0
 Provides-Extra: test

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/RECORD

@@ -1,6 +1,6 @@
-biotite/__init__.py,sha256=owozDFc8SQWwuheiCCYOy-yH3_j8q-gi9NGQU1qNqoI,543
+biotite/__init__.py,sha256=Ik4G4g6cxAnWqDNPfy8RfXVnO39z1jyD5QxOXwNKXng,541
 biotite/copyable.py,sha256=bS6JvqiG2G-8Kav7hzJb2mhO0mSpgjFvm_LD_t9dTLA,2042
-biotite/file.py,sha256=M7FlQdNOUjDOBjkLMrzPq-xljwEFe93jFCLrFV6rprw,7578
+biotite/file.py,sha256=Hu4NPQOgTtgt10fgRSOaD92Ur2rBMUUBW-fOniFUsJw,7680
 biotite/temp.py,sha256=zROAfIdwaqso8_cvpVkCM37LNtzpke-XIoidHZkDnuY,2130
 biotite/visualize.py,sha256=yuQJEwZhfbXPR8tWKUywusP1puFlLc_DAbctY_nCrhM,10092
 biotite/application/__init__.py,sha256=k1y1IgbK_vZJdHbQt4cgNgR1auc-riGcjrb5rkhyQuQ,1778
@@ -17,7 +17,7 @@ biotite/application/blast/webapp.py,sha256=J_uRQMFMdCOyGP-kEaXRNLgDHopUU68Wcuru5
 biotite/application/clustalo/__init__.py,sha256=11hGCckaAM6MOv9krf585L5-7JAgRMJv2bxv3UlrgAQ,336
 biotite/application/clustalo/app.py,sha256=hUA_bFHf_5M-Ath6brNC4-BzI0fdWS04AhDE_pV7M_U,8068
 biotite/application/dssp/__init__.py,sha256=ILnVuoQhzPQRXDyDVVu2_I4xCejdRtQY8PbsM1UExos,333
-biotite/application/dssp/app.py,sha256=l9J7VxfXP5WlpoCa-GZiNT1Vv5Tsyt73IwdbtsVkMd0,5081
+biotite/application/dssp/app.py,sha256=g2z5u8bty5NxVNufaYavBECg65UlqWpSn98BShblxFg,4980
 biotite/application/mafft/__init__.py,sha256=AtmjXcE6WsWc8JxbcmUtIHDqPBh8cH1XTZrxWlEihx8,325
 biotite/application/mafft/app.py,sha256=YUuKdY7ELYQUfzO6CZ6TkqDKP3WDx_nyggVaBbkKASQ,3622
 biotite/application/muscle/__init__.py,sha256=22UWh76stefAwlwMayawfD9kJTjlsXdUfgrsnVze8Bw,349
@@ -41,12 +41,12 @@ biotite/database/entrez/download.py,sha256=Ieqx9Rx_A36RZiEMzuY1pw8CXEnofHguLQ9qR
 biotite/database/entrez/key.py,sha256=XSaqJT7IhbGI1UUZNmgbu0elKJ9KWRvxHhOS6aw8QhI,1154
 biotite/database/entrez/query.py,sha256=n55TM0yhJVhywTA60o159_GDrnff3kfxXrS5MbrE76o,7245
 biotite/database/pubchem/__init__.py,sha256=pTsYwm9pQYHTVFmkVJC0qZkN0cxl21ZwT5KqIR_qpuQ,688
-biotite/database/pubchem/download.py,sha256=6BC3p9lM6dF-AXc34LlkrI04AgUQAT_ZAG1b8jutLks,10377
+biotite/database/pubchem/download.py,sha256=Y15plkcYOJCJOY7-kxGd_xoFs7xEscDLzj-INkFggxM,10257
 biotite/database/pubchem/error.py,sha256=rC91vT5WHPwdanldwLMJWUrYkdFDCZkjCiEHy_WpDZc,730
-biotite/database/pubchem/query.py,sha256=JhmrlulVF0FAFf92fmCipXkMALqTZgv9EV93pDcDxvs,27267
+biotite/database/pubchem/query.py,sha256=1yvLR_wYtT-1ywij7wW8JIM7ohj2qO8ux7flu4PLOVY,27252
 biotite/database/pubchem/throttle.py,sha256=GK-x6_zV7gJ3gUyxEUSbO8YbT5J6Oj3XIB5zs5ZoU1c,3643
 biotite/database/rcsb/__init__.py,sha256=qb0x-Z4npqOyGi5nY5A-66xXb7woPSy1M2d_jVadRj4,343
-biotite/database/rcsb/download.py,sha256=aZkP5KrrEChhhZgOv-PKnAiVmfbVBxRTI-lJrRLutL8,5949
+biotite/database/rcsb/download.py,sha256=ZlbYbAvCsri4NnpDvaLeCSTJUSlz6etQOExd_301rN0,6163
 biotite/database/rcsb/query.py,sha256=CzV9YOujbyjmIv-2OuLVJN3iHC4WiOAaNcZfnPC7muc,34023
 biotite/database/uniprot/__init__.py,sha256=0U1mt1nphhPZomlauOeMEVDfFx-6Npyi2eGsf6ztH6E,347
 biotite/database/uniprot/check.py,sha256=wmxqqAV9NkEHlC4st4uP9yqhrjJ26uFQfuJM1ItFqIk,1278
@@ -54,9 +54,9 @@ biotite/database/uniprot/download.py,sha256=MGxeS3DwSIn8WUur1-hOFEKgr4tgKZLmDdTc
 biotite/database/uniprot/query.py,sha256=283jqn5qr_Lfsi5oUQ-LkK5Cutauy8kDih26rZdkEzg,7099
 biotite/sequence/__init__.py,sha256=K2I_Ds-pEmY25pEbzrIKCUMt9De2pPOG-hoMfsxn8nQ,3106
 biotite/sequence/alphabet.py,sha256=-f1p9hVGEgFbjawce2J3Ybug5VY2hkZiN3gPujeYStU,18350
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-biotite/sequence/codec.c,sha256=cKplAG5Vvl3HNucSyymCR9th9v8ChjFIlPix5QOp2pY,1528304
-biotite/sequence/codec.cp312-win_amd64.pyd,sha256=3gWOdpqKYI2tJRc_a0rV6krB4_pZM6YG4JsBjKQn5gg,249856
+biotite/sequence/annotation.py,sha256=U1-vAsQvF02eazhEE0qqujBSkTv1_jiPrjSkoU8LY88,30575
+biotite/sequence/codec.c,sha256=UNq8JS6SrqYoq37dCO_fJ8xA9rh4ZR3qM4p2aYK1P6U,1528672
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 biotite/sequence/codon.py,sha256=g3CfUkCbzm0kwDf0jsQdOk0RBKU9B4HvJEq5bCqTvRc,16921
 biotite/sequence/codon_tables.txt,sha256=knCf-Q8tZToxEr7s4nM9xuq_5BlhL_IYEyNh9rfwWEQ,10411
 biotite/sequence/profile.py,sha256=a455N4r1ua9e5tDZIp8u014ELxZE-Sxw_IUeCuqjgrQ,17269
@@ -65,33 +65,33 @@ biotite/sequence/seqtypes.py,sha256=NjBXwpTer2PhcEwngpWBYwYwR6yj3N_7JTILIoG3UNM,
 biotite/sequence/sequence.py,sha256=aRA8oHwWt8xyC8mHD0vPNpbYJiihyanD1hkUl9-qrfo,12285
 biotite/sequence/align/__init__.py,sha256=0nXg-din6JaXqPAZsv9yf0F7YICjNsXTc4erZotaF10,1752
 biotite/sequence/align/alignment.py,sha256=IiD_v_N10M3xRn2Xn5BdPT3E7dRIS7Qsne0WQUWWRks,21995
-biotite/sequence/align/banded.c,sha256=EAzvqA1OWV0L4JmRSGC7ERvpzQYJZq0hDIn8brHOUlI,2577668
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+biotite/sequence/align/banded.c,sha256=J8FddOqr0oy98ElShIo52eJzdHWjOZ13WCKYes2Q6lc,2578219
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 biotite/sequence/align/buckets.py,sha256=smW_ioFzL_tkc1ybfzbmLVujgEBFeESCZSXc4Fx9KIs,2490
-biotite/sequence/align/cigar.py,sha256=jx5Str7TTIfRPZwvIk-JLE8_cueVMoobokAweq5TUv4,13303
-biotite/sequence/align/kmeralphabet.c,sha256=StvTZRZGys4_HZ6SBax2Oxcp6znodzdRBlul-0orQa4,1912290
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 biotite/sequence/align/matrix.py,sha256=LAh-OYS5Lsp_P9M-Zk31785Dz2LVb8C6mJr5P6mBY9o,13692
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 biotite/sequence/align/primes.txt,sha256=XcNX2_hYQI4H-8MPvZH1oiYeQ1lfxU8rBvuwMlcQa3Y,10961
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 biotite/sequence/align/statistics.py,sha256=m8O15sp8ENnyM_PcJEmiTy0lJ9O9h9-Cw3FEIzQXpVY,9996
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 biotite/sequence/align/matrix_data/BLOSUM100.mat,sha256=W-q25YSvx6Eh_OMpjlHAxHS1CN2n8pfKvxVzTYeE-ck,2205
 biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=s5AR5BjhXVly2A900JiriOodp2I5tv95wqw87TUAyOk,2153
 biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=0PksmPiSphINnKFWBh1jQieLg0F5bIISIwZVwS7trFc,2153
@@ -210,7 +210,7 @@ biotite/sequence/graphics/color_schemes/wither.json,sha256=SawwzITBHvhS4XYf6CkND
 biotite/sequence/io/__init__.py,sha256=MbsrDuoq0Cxd77d9m0ueUvI0lsftNt5EibJIYUo6a0M,326
 biotite/sequence/io/general.py,sha256=OO-hwLh9Htg7zXGQLQQDCgf3mPdQrgJwBKp9ZryN7tA,6762
 biotite/sequence/io/fasta/__init__.py,sha256=D3tP3axh_WL7dlDEve8lsjTi_KFnJnbXIv8Uh8OurfU,740
-biotite/sequence/io/fasta/convert.py,sha256=9A1J5rbKWVuuS1eVwyxaE3q3VYHKkwVxuaJlpNi-Ow0,9720
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 biotite/sequence/io/fasta/file.py,sha256=_N_XR60SA-MuK41p46VKtXXFY6oJ-QdRNmCb74otaW0,9714
 biotite/sequence/io/fastq/__init__.py,sha256=9gwrwPLZ-2-3AU-PIBKxJfs9DmB4I9mCMupeL8rIkec,605
 biotite/sequence/io/fastq/convert.py,sha256=HekmBDfG45Wp_eX5G61dE-9iwqYV-ox1qhT9CdgW-XM,3886
@@ -224,110 +224,116 @@ biotite/sequence/io/gff/__init__.py,sha256=8VlLeqLj707W2Df_2heO8GLRFr1w6VZZdZYC0
 biotite/sequence/io/gff/convert.py,sha256=2pQ15ZndbMd2zdlHu9wkbXJek8prcWWxWVNVtDvpVxc,4831
 biotite/sequence/io/gff/file.py,sha256=Vs6J_tFVsouke9Vfw4Gr84pVEnY2fZwAczzG9DXOWlg,16501
 biotite/sequence/phylo/__init__.py,sha256=aQFrdnlkwdrI-7JaU74puj3Jd9n8YOb8xBr_MWgRJqg,1295
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 biotite/structure/atoms.py,sha256=7sE_YceqnjoC0fxiIaOc9woujWdvIjb6Dfi2L8hG71I,49471
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 biotite/structure/io/tng/__init__.py,sha256=3aQ_lcXAswoklT3IkbCK6yLKDMjBJwE7jU0ke0aNLmE,368
 biotite/structure/io/tng/file.py,sha256=MW861kpo8fRqd3GFHFuV0LALkP6Q8nPhQkuj-uz1gU0,1348
 biotite/structure/io/trr/__init__.py,sha256=ayqC8DyqjJ93VVytJEdmBHNcHTaIZOCfktzpBdxFFwU,370
 biotite/structure/io/trr/file.py,sha256=4rS9HNoXQXCauquOTbkUWeveq9LEy0CKBNgi_IMTL-s,1348
 biotite/structure/io/xtc/__init__.py,sha256=NHHFO6mTJCj3pfbP4saehOcKXrYr9CxVMSuJVb9QJHE,368
 biotite/structure/io/xtc/file.py,sha256=UQ-QF5leM2ujMPde8RFe3dNShHXjl8lJ0qWU77QkbCY,1344
-biotite-0.39.0.dist-info/LICENSE.rst,sha256=wDDtR8LuBedgqNIor2N5YGv4nj9flZltCDSu2fhjGbo,1564
-biotite-0.39.0.dist-info/METADATA,sha256=Bkpi3y2PMDrs0DCtqrC-BPGw9YN8CnStATb4l1XX1DU,7333
-biotite-0.39.0.dist-info/WHEEL,sha256=j9Aissza3750LQHFAQyYerNjmkEON1-8w_RaZNFtKSs,102
-biotite-0.39.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
-biotite-0.39.0.dist-info/RECORD,,
+biotite-0.41.0.dist-info/LICENSE.rst,sha256=wDDtR8LuBedgqNIor2N5YGv4nj9flZltCDSu2fhjGbo,1564
+biotite-0.41.0.dist-info/METADATA,sha256=0LGUK1F2cL2-XIIPgWe4eINM6GkgaA3rUggBNeh2MZQ,7340
+biotite-0.41.0.dist-info/WHEEL,sha256=fZWyj_84lK0cA-ZNCsdwhbJl0OTrpWkxInEn424qrSs,102
+biotite-0.41.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
+biotite-0.41.0.dist-info/RECORD,,

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: false
 Tag: cp312-cp312-win_amd64