biotite 0.38.0__cp310-cp310-macosx_11_0_arm64.whl → 0.40.0__cp310-cp310-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of biotite might be problematic. Click here for more details.

Files changed (124) hide show
  1. biotite/__init__.py +3 -3
  2. biotite/application/application.py +33 -28
  3. biotite/application/dssp/app.py +18 -18
  4. biotite/application/sra/__init__.py +5 -0
  5. biotite/application/sra/app.py +337 -55
  6. biotite/database/entrez/__init__.py +2 -1
  7. biotite/database/entrez/check.py +14 -3
  8. biotite/database/entrez/download.py +20 -13
  9. biotite/database/entrez/key.py +44 -0
  10. biotite/database/entrez/query.py +38 -34
  11. biotite/database/pubchem/query.py +44 -44
  12. biotite/database/rcsb/download.py +19 -14
  13. biotite/database/rcsb/query.py +46 -46
  14. biotite/sequence/align/__init__.py +5 -1
  15. biotite/sequence/align/banded.c +1408 -1025
  16. biotite/sequence/align/banded.cpython-310-darwin.so +0 -0
  17. biotite/sequence/align/buckets.py +69 -0
  18. biotite/sequence/align/cigar.py +389 -0
  19. biotite/sequence/align/kmeralphabet.c +3220 -2850
  20. biotite/sequence/align/kmeralphabet.cpython-310-darwin.so +0 -0
  21. biotite/sequence/align/kmersimilarity.c +713 -663
  22. biotite/sequence/align/kmersimilarity.cpython-310-darwin.so +0 -0
  23. biotite/sequence/align/kmertable.cpp +68398 -0
  24. biotite/sequence/align/kmertable.cpython-310-darwin.so +0 -0
  25. biotite/sequence/align/localgapped.c +1507 -1074
  26. biotite/sequence/align/localgapped.cpython-310-darwin.so +0 -0
  27. biotite/sequence/align/localungapped.c +1143 -833
  28. biotite/sequence/align/localungapped.cpython-310-darwin.so +0 -0
  29. biotite/sequence/align/multiple.c +1569 -1092
  30. biotite/sequence/align/multiple.cpython-310-darwin.so +0 -0
  31. biotite/sequence/align/pairwise.c +1612 -1212
  32. biotite/sequence/align/pairwise.cpython-310-darwin.so +0 -0
  33. biotite/sequence/align/permutation.c +33259 -0
  34. biotite/sequence/align/permutation.cpython-310-darwin.so +0 -0
  35. biotite/sequence/align/primes.txt +821 -0
  36. biotite/sequence/align/{kmertable.c → selector.c} +9129 -16497
  37. biotite/sequence/align/selector.cpython-310-darwin.so +0 -0
  38. biotite/sequence/align/tracetable.c +685 -646
  39. biotite/sequence/align/tracetable.cpython-310-darwin.so +0 -0
  40. biotite/sequence/codec.c +1159 -841
  41. biotite/sequence/codec.cpython-310-darwin.so +0 -0
  42. biotite/sequence/graphics/alignment.py +212 -2
  43. biotite/sequence/io/genbank/annotation.py +11 -11
  44. biotite/sequence/phylo/nj.c +684 -636
  45. biotite/sequence/phylo/nj.cpython-310-darwin.so +0 -0
  46. biotite/sequence/phylo/tree.c +970 -673
  47. biotite/sequence/phylo/tree.cpython-310-darwin.so +0 -0
  48. biotite/sequence/phylo/upgma.c +672 -626
  49. biotite/sequence/phylo/upgma.cpython-310-darwin.so +0 -0
  50. biotite/structure/__init__.py +1 -1
  51. biotite/structure/atoms.py +1 -1
  52. biotite/structure/basepairs.py +7 -12
  53. biotite/structure/bonds.c +3861 -3749
  54. biotite/structure/bonds.cpython-310-darwin.so +0 -0
  55. biotite/structure/celllist.c +727 -707
  56. biotite/structure/celllist.cpython-310-darwin.so +0 -0
  57. biotite/structure/charges.c +1561 -1560
  58. biotite/structure/charges.cpython-310-darwin.so +0 -0
  59. biotite/structure/filter.py +30 -37
  60. biotite/structure/info/__init__.py +5 -8
  61. biotite/structure/info/atoms.py +25 -67
  62. biotite/structure/info/bonds.py +46 -100
  63. biotite/structure/info/ccd/README.rst +8 -0
  64. biotite/structure/info/ccd/amino_acids.txt +1646 -0
  65. biotite/structure/info/ccd/carbohydrates.txt +1133 -0
  66. biotite/structure/info/ccd/components.bcif +0 -0
  67. biotite/structure/info/ccd/nucleotides.txt +797 -0
  68. biotite/structure/info/ccd.py +95 -0
  69. biotite/structure/info/groups.py +90 -0
  70. biotite/structure/info/masses.py +21 -20
  71. biotite/structure/info/misc.py +11 -22
  72. biotite/structure/info/standardize.py +17 -12
  73. biotite/structure/io/__init__.py +2 -4
  74. biotite/structure/io/ctab.py +1 -1
  75. biotite/structure/io/general.py +37 -43
  76. biotite/structure/io/mmtf/__init__.py +3 -0
  77. biotite/structure/io/mmtf/convertarray.c +528 -365
  78. biotite/structure/io/mmtf/convertarray.cpython-310-darwin.so +0 -0
  79. biotite/structure/io/mmtf/convertfile.c +725 -676
  80. biotite/structure/io/mmtf/convertfile.cpython-310-darwin.so +0 -0
  81. biotite/structure/io/mmtf/decode.c +1070 -754
  82. biotite/structure/io/mmtf/decode.cpython-310-darwin.so +0 -0
  83. biotite/structure/io/mmtf/encode.c +727 -677
  84. biotite/structure/io/mmtf/encode.cpython-310-darwin.so +0 -0
  85. biotite/structure/io/mmtf/file.py +34 -26
  86. biotite/structure/io/npz/__init__.py +3 -0
  87. biotite/structure/io/npz/file.py +21 -18
  88. biotite/structure/io/pdb/__init__.py +3 -3
  89. biotite/structure/io/pdb/file.py +72 -70
  90. biotite/structure/io/pdb/hybrid36.c +540 -478
  91. biotite/structure/io/pdb/hybrid36.cpython-310-darwin.so +0 -0
  92. biotite/structure/io/pdbqt/file.py +82 -68
  93. biotite/structure/io/pdbx/__init__.py +13 -6
  94. biotite/structure/io/pdbx/bcif.py +649 -0
  95. biotite/structure/io/pdbx/cif.py +1028 -0
  96. biotite/structure/io/pdbx/component.py +243 -0
  97. biotite/structure/io/pdbx/convert.py +707 -359
  98. biotite/structure/io/pdbx/encoding.c +112813 -0
  99. biotite/structure/io/pdbx/encoding.cpython-310-darwin.so +0 -0
  100. biotite/structure/io/pdbx/error.py +14 -0
  101. biotite/structure/io/pdbx/legacy.py +267 -0
  102. biotite/structure/molecules.py +151 -151
  103. biotite/structure/residues.py +40 -40
  104. biotite/structure/sasa.c +713 -644
  105. biotite/structure/sasa.cpython-310-darwin.so +0 -0
  106. biotite/structure/superimpose.py +158 -115
  107. biotite/visualize.py +9 -11
  108. {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/METADATA +2 -2
  109. {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/RECORD +112 -102
  110. {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/WHEEL +1 -1
  111. biotite/structure/info/amino_acids.json +0 -1556
  112. biotite/structure/info/amino_acids.py +0 -42
  113. biotite/structure/info/carbohydrates.json +0 -1122
  114. biotite/structure/info/carbohydrates.py +0 -39
  115. biotite/structure/info/intra_bonds.msgpack +0 -0
  116. biotite/structure/info/link_types.msgpack +0 -1
  117. biotite/structure/info/nucleotides.json +0 -772
  118. biotite/structure/info/nucleotides.py +0 -39
  119. biotite/structure/info/residue_masses.msgpack +0 -0
  120. biotite/structure/info/residue_names.msgpack +0 -3
  121. biotite/structure/info/residues.msgpack +0 -0
  122. biotite/structure/io/pdbx/file.py +0 -652
  123. {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/LICENSE.rst +0 -0
  124. {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/top_level.txt +0 -0
@@ -1,47 +1,48 @@
1
- biotite-0.38.0.dist-info/RECORD,,
2
- biotite-0.38.0.dist-info/WHEEL,sha256=ReeDLt7JoWNv8uQs9jcofmiBOX-MvocIgD8kJPMfr7M,110
3
- biotite-0.38.0.dist-info/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
4
- biotite-0.38.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
5
- biotite-0.38.0.dist-info/METADATA,sha256=3gtuDtbXn5u1rQpxJ5huN9peBeZQSlZed16aX1pGGtE,7145
1
+ biotite-0.40.0.dist-info/RECORD,,
2
+ biotite-0.40.0.dist-info/WHEEL,sha256=E2L8cNry8_qENFWMb8KxRWLe-RhZW94hLc32Xo3HiTg,110
3
+ biotite-0.40.0.dist-info/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
4
+ biotite-0.40.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
5
+ biotite-0.40.0.dist-info/METADATA,sha256=F_Wg3VF0txg1mUbDMmCGUR4_Omt6fNY_xpNmUqEeMoQ,7151
6
6
  biotite/copyable.py,sha256=Rmsso_e9quxWc23SBQh2M45jTT36SerwSmt3ONng04M,1972
7
- biotite/__init__.py,sha256=DImmXnTUPci0an512zShQMRh10J30amuoWEE7vDszW8,524
8
- biotite/visualize.py,sha256=Vefoz1HbPdKrdBbsFmPdE-BtCffoMPSD5zJ7qHaOdKg,9971
7
+ biotite/__init__.py,sha256=xHwZNZlRcAlkSZFw6EMrVf5GqBoft7VfnmLDkqxF2Fo,522
8
+ biotite/visualize.py,sha256=mLME6fOGwdcUZLUzDTbwUpZokC4D1cVE6ICdtJDc0yw,9842
9
9
  biotite/file.py,sha256=flQknYLaLSlbX38D8_I3fG9DAo4D3ExeoRzweMoZMno,7335
10
10
  biotite/temp.py,sha256=AenIC7m3rrezikJDKgTEnLZigACubfsw_UcmYMGyGa8,2045
11
11
  biotite/database/error.py,sha256=oEJGj28R9VRkLt_DcsqNsf-rwHe3E2ma5uduzqAgZ1w,408
12
12
  biotite/database/__init__.py,sha256=_C25CsDE8O_770Vmk6sCK4FKlQ0A1hUhWaMRPOvkDtM,724
13
- biotite/database/entrez/check.py,sha256=oYBphVUEAMA3pilMHEBkb6uW48ZZHGrYBKVOQfNOaG0,1497
14
- biotite/database/entrez/query.py,sha256=A1ZMrEsCg89_EFUYSbNtSck9XAjZH1B5GDNSPWXjCsM,6808
15
- biotite/database/entrez/download.py,sha256=icgNYWSeEzQIZ11MVtXQUegJmLjOsaUGrpo7kqur7tI,7219
16
- biotite/database/entrez/__init__.py,sha256=9_-F1emCojdmmGwbu7J2H-BH4S7YLy-18A1TPQ2Bwl0,368
13
+ biotite/database/entrez/check.py,sha256=0k_shKrxNeN-UDSzs-NSnMYKKTmqW91J1O9YZZqc2xI,1838
14
+ biotite/database/entrez/query.py,sha256=c23d7IBNM4ANx9ihazW4raKAhjc6ApvzVVzX7aIhycc,7022
15
+ biotite/database/entrez/key.py,sha256=G2VjGYA9JMnHjve-8EVQ5FNmDGq5MX12w_As7Ch-t7I,1111
16
+ biotite/database/entrez/download.py,sha256=kc4J1Q4sixDqMFct_TuwmxEi6cD8zMhj8SKx4GpyLfg,7424
17
+ biotite/database/entrez/__init__.py,sha256=kEqKdo14RWWiLI5rhDoTIdbWZy2ztNODcxxh54ugbcc,387
17
18
  biotite/database/entrez/dbnames.py,sha256=Cf87B9-2bVQuZpuSwB94vOuVO3x3UdEcwxR0DNupwXY,2614
18
19
  biotite/database/uniprot/check.py,sha256=vSIZ6t7zzOvAifhRONFcYHUxxs0YFB9lflB_9YBEUGw,1246
19
20
  biotite/database/uniprot/query.py,sha256=bzJenXwN3iKLxwJT9uaB19LBam8GRYWfeBzS_Pyones,6890
20
21
  biotite/database/uniprot/download.py,sha256=rWrgLrDCnItLe5fU3_oSZvYJToqWmqfffN5JvBumdyM,4378
21
22
  biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
22
23
  biotite/database/pubchem/error.py,sha256=5kLtd9r3KkR9PZfTEfaRA5LRIG2K-XQKqiEBZZ0pd4g,711
23
- biotite/database/pubchem/query.py,sha256=KaNCrOcuonOyMR6fKcQu5b_IBDPKdjvvfq3V_3t_BOU,26610
24
+ biotite/database/pubchem/query.py,sha256=odzR1G-psQnMAcWL97pj_xc9BH6sUlgru1vg4SD00Vc,26440
24
25
  biotite/database/pubchem/download.py,sha256=rio_-ykW1xAZhhWcd-U88NYrwcI1lsJNrG75PEuGRfc,10117
25
26
  biotite/database/pubchem/__init__.py,sha256=Lnk0h85FzSFBu6KAG3P5ssbGfXE2lX-EMYXWCafPF0o,668
26
27
  biotite/database/pubchem/throttle.py,sha256=RzMFaBKJVWygH2QlLQEFO_EBcN7nGxj6Sq-sAB7njvY,3534
27
- biotite/database/rcsb/query.py,sha256=ahxskCJRnOo1o4DPBH0M0FRw24JIZaEgH-OEqahYQvg,33263
28
- biotite/database/rcsb/download.py,sha256=LcuB7UnjGyra6ERPrljnrNoWxfp15ZyD7SIiQ6FBQTg,5787
28
+ biotite/database/rcsb/query.py,sha256=I5eAsdsW8FT-O0cKz_71dpS-HrEe0VtauliAPQMPBSo,33065
29
+ biotite/database/rcsb/download.py,sha256=A34iNIVufjUu1b21hj3jhcxIlXmUWDLt5I5jCMBOW1I,5996
29
30
  biotite/database/rcsb/__init__.py,sha256=D0aWxH2qmDycBBNtSUUQQHusOYxS1sf_4P4rJI85kyU,331
30
31
  biotite/application/util.py,sha256=KmvdyozUayuvlmGZ2QYkXeJCkqayvEmpQJDSXPL8I7w,2104
31
32
  biotite/application/localapp.py,sha256=RA6MVIn5lSOhfv62H1QP6ymkiiMvzjK3swb9JSY6xAs,9450
32
33
  biotite/application/webapp.py,sha256=8jaHFsjJmt5EUMX1ajiOVm1yJqpFRfH_2zb44J5H9xc,2226
33
34
  biotite/application/__init__.py,sha256=ZsDk_A34W4W1jrA2zlHWhXXqe2uBKQVWDMa58d0IZiY,1736
34
- biotite/application/application.py,sha256=szjri5DKhPUadFLKLCctQNCObFfUeUiqEzlChjimAzY,8104
35
+ biotite/application/application.py,sha256=6-UfFW1ssAeU6Xfd17ovjOREoa6owFIYWWDDIHVNUgE,8129
35
36
  biotite/application/msaapp.py,sha256=tAXy8OKqHProreN4zDgNGcFFC7vFGoK6YFgNLeD9QxA,12346
36
37
  biotite/application/dssp/__init__.py,sha256=CdRcAe_Uc_kGl_I0_Cn1Qk_4RsFn_n-u8SbLrklvYEM,322
37
- biotite/application/dssp/app.py,sha256=PLSsCMi2EuxygpDJu-_QPUj_xxg0Vr6W7mvu3K5glqw,4929
38
+ biotite/application/dssp/app.py,sha256=5l3ZKHHacp18w1L3tC1MImpfIWWyltQkV-cATlDmCvc,4828
38
39
  biotite/application/viennarna/rnaalifold.py,sha256=4petrddQWumjtUzWxjVKqategejEczthqkwMIjkPvDE,10556
39
40
  biotite/application/viennarna/util.py,sha256=mmfX6uJjJfPyc4lNx4FvbhIP2PFxVvjwxWQrEm9P7MQ,2675
40
41
  biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
41
42
  biotite/application/viennarna/rnaplot.py,sha256=B5brOyj5MxUXP0H0O6m3iOuiKwB9KvNTXFpE1Ub9ejc,6193
42
43
  biotite/application/viennarna/rnafold.py,sha256=vTA6QYvKqQXoIb7yGIOmeM1ZO7ql0h4ONF2KyepZ-1A,8355
43
- biotite/application/sra/__init__.py,sha256=0fUuouwrJGMDKLrZbOj4gd55-2VZoJvshtDtdbcyJeY,343
44
- biotite/application/sra/app.py,sha256=1Yp8gVpm0LPJHMNV4qo-atOfMop5YFbZ647DR8f6CCU,6539
44
+ biotite/application/sra/__init__.py,sha256=zaa9acXWJ1xZBDY8Jgtynhw2t02a6NxuYSqQux2l88E,552
45
+ biotite/application/sra/app.py,sha256=aUV81ZUPCv_jow9oVjGHgtZITRl6YukBaI1c7yaHFX4,15898
45
46
  biotite/application/autodock/__init__.py,sha256=DYbdIDGdRX2GUP1wTb23e7uaVfkLMFneFGDIlXEO6Fg,314
46
47
  biotite/application/autodock/app.py,sha256=Aoi0T0fhabadL_OxY5RqVRonQM4EHJ55PugcpMM4qXQ,18803
47
48
  biotite/application/blast/alignment.py,sha256=BAZvhURmcsfqd0oNaHN_58Es2BpbhZEvwndtZcVQOB4,3068
@@ -56,10 +57,10 @@ biotite/application/clustalo/app.py,sha256=tPZFZ5SP1jCE1OQlTz7WzFOmdZ5B6JHTTjaCU
56
57
  biotite/application/muscle/app3.py,sha256=tm51pw2zuDcuua-an5eaD_oBGh_PBL8vdlGdfUkXLF4,8450
57
58
  biotite/application/muscle/__init__.py,sha256=UZFXceMzefsY6Y1CokOpWC2ZgWeiM8NiCHqEzLJDeQ8,337
58
59
  biotite/application/muscle/app5.py,sha256=9tbw6XISmu9CEvFPDxoXW72HnrpAPf0MZY4jH7F8jK0,4799
59
- biotite/sequence/codec.c,sha256=NWdyXCUWPIbTZViWAUmtdCFwrdGNgBuBWJDqmB0eaDI,1522185
60
+ biotite/sequence/codec.c,sha256=P4UdW9t94Bl2jhuap3YFelCf3RM7zyc74jBhpFqnOlg,1534101
60
61
  biotite/sequence/annotation.py,sha256=h8e1IJhmHXoqs8yw1Y6QwFLrGcb5XF8ewDkkxPhThXo,29786
61
62
  biotite/sequence/sequence.py,sha256=AbOf4a3ApXUBgflzYRux2nqpd6jDCXVAByUBkt9Jroo,11911
62
- biotite/sequence/codec.cpython-310-darwin.so,sha256=8wTg7SVY4dlLfhFSwkjnB_q_Mz9rRr61rEOwCChX4nA,319000
63
+ biotite/sequence/codec.cpython-310-darwin.so,sha256=CoXBDmHY-gWd-LZ7AzIBEKbBlTcbrt2JKwd3O5Fc_so,319096
63
64
  biotite/sequence/profile.py,sha256=LkH-jcTmxOyWMmhTgjjF7ykmQ7KlKidAdGp3X5_Wm-4,16813
64
65
  biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
65
66
  biotite/sequence/__init__.py,sha256=jwkyw2DlOVCyeZAfT5V1P-q6lZN7c7kINhNbtF2tODs,3033
@@ -75,7 +76,7 @@ biotite/sequence/io/fasta/file.py,sha256=JYTeHugajnSJ9lwSwcVgsBBEei9pf9S4LWZrM2V
75
76
  biotite/sequence/io/gff/convert.py,sha256=BnAMkQl7mVO6b2vupznhDyd5-tpbhYKstCRMmhlEmOM,4699
76
77
  biotite/sequence/io/gff/__init__.py,sha256=MgHjJOxnpGa8irduKlcilQZMsTlNy8A0NW-YWF37I8c,923
77
78
  biotite/sequence/io/gff/file.py,sha256=fOvEGMOAyzle9Z480ns6iDGIgAyCJivCMgiW15KsEuw,16068
78
- biotite/sequence/io/genbank/annotation.py,sha256=qW46GTVugicFa61z2isPDfuCJB4wAxSYe6SUXPfIda8,9496
79
+ biotite/sequence/io/genbank/annotation.py,sha256=x-v-TuJzTsD7AQYSHiW9tYu7DptrF-Y_65qHB-5lkQE,9454
79
80
  biotite/sequence/io/genbank/metadata.py,sha256=-ghmHS_tkEz0mP3wiXIrt85DBHpqQytWHtq6qFQMe8g,7174
80
81
  biotite/sequence/io/genbank/sequence.py,sha256=Nd4WI4-nak1tYvyEj7wtsVFMYoITZTv6HGHTA69UeDI,5641
81
82
  biotite/sequence/io/genbank/__init__.py,sha256=hHZLrbxcjgaQsNYd6oAlRTzsyM8g349_QT4zhQTv8o8,472
@@ -83,28 +84,35 @@ biotite/sequence/io/genbank/file.py,sha256=lY5LPFJU7q1mGWkE_iF8XQgBzkY_3aOFCxI9n
83
84
  biotite/sequence/io/fastq/convert.py,sha256=eluwgaDZggVNaBmyNWYioxsvcajJfqWTqTU12BP__yo,3767
84
85
  biotite/sequence/io/fastq/__init__.py,sha256=B_X3WAWxlHkYWJAO7Aeb22RWtsx79y7s6TnmcIP4IGQ,587
85
86
  biotite/sequence/io/fastq/file.py,sha256=a_tk-RyqcJn0ioRe68V6ET3g8if3i5L_Dg0HAjrLw14,19115
86
- biotite/sequence/align/banded.c,sha256=UinxL7v8B5O4eS8T2KUYryUFxslN0TqOHrHY-QxT11c,2570431
87
- biotite/sequence/align/localungapped.c,sha256=ZuRap9-VGrOHcGt2rjX9pe3QTgvmRGFQm5H-6QTAu4Y,1599318
87
+ biotite/sequence/align/banded.c,sha256=Mb_F7g83J5WxgTGGf9vinB_LVqSoxy9-pvtWN9fy6uI,2583643
88
+ biotite/sequence/align/localungapped.c,sha256=ojdoSgzcswnDdnhuxbVSTVYhH9k08iTs11gWRIqoHts,1610949
88
89
  biotite/sequence/align/matrix.py,sha256=fYfhqeuMZJEYJsaTFgbRLnu3BBFx97UANfIhGxHT7l0,13287
89
- biotite/sequence/align/localgapped.c,sha256=MsUF0GfuMI5wGjPm5Vkf-kJnG-X_mNDkTOeNEyYsXIg,4589469
90
- biotite/sequence/align/kmersimilarity.cpython-310-darwin.so,sha256=PpcNy-w-za2phCFtychBNwiIQpv89s-5xjvPxP8rNq8,247505
91
- biotite/sequence/align/tracetable.cpython-310-darwin.so,sha256=Z_8ok6zYynJoNuV-RaTn3XLE03FfQzvineM5m9ETWtI,204733
90
+ biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
91
+ biotite/sequence/align/localgapped.c,sha256=oLgJcmkuNBsJAzsm6bjKE0Y9jxHY8TnCJyfH90ssADg,4604705
92
+ biotite/sequence/align/kmersimilarity.cpython-310-darwin.so,sha256=dMhcOOQvcqFEL9xI3293hmwI7NrtUblPOaQ1T6gREEM,247585
93
+ biotite/sequence/align/tracetable.cpython-310-darwin.so,sha256=_ADbfQ7zZghF-paJcBLeXdNssmMNfZBG4BbzO5GXkmU,204813
92
94
  biotite/sequence/align/alignment.py,sha256=MF_3R2MMjuwwvG7j4pybQjdPCTk2fAwg_4gW-muzKfA,21338
93
- biotite/sequence/align/kmersimilarity.c,sha256=zuWBefW2dUzbnQvi0iv1U22LU6u0M7d3MI6e5pT2cp0,1255549
94
- biotite/sequence/align/kmeralphabet.cpython-310-darwin.so,sha256=sZLSFerBXnQxMYPgrsUygNYGwfOT8-M2deCcdHcHFA0,396079
95
- biotite/sequence/align/__init__.py,sha256=9hJjNEplN2AA5HGPJYF9GwY9APb2b71nCwdU60HEKWM,1610
96
- biotite/sequence/align/kmertable.c,sha256=aDSQzT2R5XhK94zSqqCxSNSYpsD6lACEzzXGfGwvq-w,2013062
97
- biotite/sequence/align/kmertable.cpython-310-darwin.so,sha256=IYVE6kTWv_xmCvx68h3UK4KJZhuMthau0bq069vK4rE,423724
98
- biotite/sequence/align/pairwise.cpython-310-darwin.so,sha256=-5cpJYPsZZVkeTEGyclAepwYxFHymQ28stqAQnnr2e4,614443
99
- biotite/sequence/align/banded.cpython-310-darwin.so,sha256=ISv7C62cl2CZ2ZbBMcazeDnfeFFM9a7SF3U_IRQNM3o,577945
100
- biotite/sequence/align/localgapped.cpython-310-darwin.so,sha256=m1H_km3p24QLHzqMnyO-NwxEFVnCRBcW-yy6HvaTG8Y,1163774
101
- biotite/sequence/align/localungapped.cpython-310-darwin.so,sha256=xua3jswu26tA8jByoiTvDTlRl16eu5Oy9zpNdXED9uU,321136
95
+ biotite/sequence/align/kmersimilarity.c,sha256=0eoswPgJDAV9VGDuqtOklNyXxDXIj2gtfRJ3Ao_YuA8,1257695
96
+ biotite/sequence/align/selector.cpython-310-darwin.so,sha256=p771J15yS-pv0hOm6zU7Ly622ycRDywaQbbMqy35OQE,343611
97
+ biotite/sequence/align/kmeralphabet.cpython-310-darwin.so,sha256=Mirx_q6-8nb-2G5SJLOshdfY6jQJ8U_ccucoeHvABy0,396863
98
+ biotite/sequence/align/kmertable.cpp,sha256=Fj3MS3HlCVdl1jq77Q2h1eQcuHWyN6Dqa6pCsVkHE5k,3035277
99
+ biotite/sequence/align/__init__.py,sha256=Xah34jQaYg0TPgzGnTqLPpPslx_y6CsgU836Ug5uUcM,1704
100
+ biotite/sequence/align/kmertable.cpython-310-darwin.so,sha256=UYoaxo5IQ2PAERHt7MwPFeEOOrVT-R98bxYeAzJ6O_E,751740
101
+ biotite/sequence/align/buckets.py,sha256=6vIIMRT3h3t8PWaJxT3TjtA_fKtYyalBv-E4OdDOy00,2422
102
+ biotite/sequence/align/cigar.py,sha256=Mk3kECMKkKWxLLgIZ1hkADsz_2AJJHrAPMulfKTCA9I,12915
103
+ biotite/sequence/align/selector.c,sha256=iuY74pbCkSqWQVoKo1bAtXNkdpYVF3m1Du1jUp8jJzE,1637723
104
+ biotite/sequence/align/pairwise.cpython-310-darwin.so,sha256=0ZHxBJc8s9ly1EoPPWd7DecbTFCNd2Wyze50mECrvP8,614523
105
+ biotite/sequence/align/banded.cpython-310-darwin.so,sha256=MZ34d9mizXm7jay_ERJPkNYBaffKsXYs0BDdwzb3fOU,578041
106
+ biotite/sequence/align/localgapped.cpython-310-darwin.so,sha256=O_XrK8_QYMMxabetiB861sy2U4X_VTOnLMya2Bcsfhk,1163854
107
+ biotite/sequence/align/localungapped.cpython-310-darwin.so,sha256=dR58LduVsG-T-xI4hOFzdL8MA2m3Bl1GxKbJNfyybJ0,321216
102
108
  biotite/sequence/align/statistics.py,sha256=TalCx3RT8jozU56DMjNKM2Q-fkRiHVq4mI3Wy1YH93M,9732
103
- biotite/sequence/align/multiple.cpython-310-darwin.so,sha256=yR1oCuFB3YklddelTuckLz0TcZ1rI41_vYONkW59hYA,546603
104
- biotite/sequence/align/kmeralphabet.c,sha256=Nlq76XNJ9CNGge8w56BdQpzVK8q9uG-YiSgINtwsMww,1905218
105
- biotite/sequence/align/multiple.c,sha256=uM5yCLJbjWYmdg0tpxSyP5dqrvemi8abbxM12k1sKH0,2264296
106
- biotite/sequence/align/pairwise.c,sha256=pP0KToIvbrabd-C8nMbUA-dkD0OJhJxIKM7LMwoiCFI,2874855
107
- biotite/sequence/align/tracetable.c,sha256=dg03Pu59799oXZoZSRqDqGpR6Rru2dabraVMTHm0vkA,1222516
109
+ biotite/sequence/align/permutation.c,sha256=tAewWZuHCu_ZDR3LIwQMh8sOJgdY2-UxmMVVTMayumU,1283868
110
+ biotite/sequence/align/permutation.cpython-310-darwin.so,sha256=9PlihBqm1FUdxob2iDOXsMdvuxqrdQLwh0s5H4ezsBQ,250238
111
+ biotite/sequence/align/multiple.cpython-310-darwin.so,sha256=X9eRo0ctDHHJy5BsnK-kg8HIxVAJxOYdM7edKNLQOj8,546683
112
+ biotite/sequence/align/kmeralphabet.c,sha256=j2Ww7vgQE3ta1BA0NgJME1FEV1y1G4c2ERlndpXGE34,1917858
113
+ biotite/sequence/align/multiple.c,sha256=8kvJlczU_SW0VVeo6hvO3Py0rtZlyhZCTZHjAJESspQ,2280166
114
+ biotite/sequence/align/pairwise.c,sha256=pJ54T-x-Picp-BeSmWGMs2DKI1tCa5i28oXYom80Qsc,2887759
115
+ biotite/sequence/align/tracetable.c,sha256=EmbHzfM7Daf3pTBcN9Y5RWxVBAL8ta6XKapJ_P68CsU,1224026
108
116
  biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
109
117
  biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
110
118
  biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -194,7 +202,7 @@ biotite/sequence/align/matrix_data/PAM340.mat,sha256=9rV5CU441SuU-MhTIOFBHbg2i6b
194
202
  biotite/sequence/align/matrix_data/PAM220.mat,sha256=58FW5l4TkLX5rUALdt0rrOXQWGqGlatGJjaZcN3HHYM,2067
195
203
  biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat,sha256=m3Es9ILTi5vCKAKjV40dLrJpZ8I0n7QaueKi0tNa1NI,1850
196
204
  biotite/sequence/align/matrix_data/PAM180.mat,sha256=mll_lIfL8oBzNlNcEhoh6ULv9lKG-HTBanUyJhzDO-U,2668
197
- biotite/sequence/graphics/alignment.py,sha256=EGeDnwtOfiZ5IhPq0oS0wjkLVpsCyeKtTmWBHpMcuEg,31624
205
+ biotite/sequence/graphics/alignment.py,sha256=Avo6hMt-JEorU4WoxtsYKh7osf5zMWwdB2zN9kVnwis,39744
198
206
  biotite/sequence/graphics/__init__.py,sha256=DPkWrFAJg0r8XrcJWSFpOKnd1w12ET4BLra-JtsixmE,1152
199
207
  biotite/sequence/graphics/features.py,sha256=qviJLDcwuB3v60x7QHWICeWMc8cyXWdvjKsTHU77pUY,17113
200
208
  biotite/sequence/graphics/plasmid.py,sha256=3c_Ov2KLWKrHlNNjOtPCqmqKIrK-QBGL7K8iUf_Wj28,25695
@@ -220,64 +228,70 @@ biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_L
220
228
  biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
221
229
  biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
222
230
  biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
223
- biotite/sequence/phylo/nj.c,sha256=SJ4J7b_catiW2HFrjJO3IdYIUxXGxroYT-S-q4fqvaE,1224112
231
+ biotite/sequence/phylo/nj.c,sha256=qe-Lb0gTTO3ERDjU1rAX784q25mJr1hog1-y1jaEcLU,1226152
224
232
  biotite/sequence/phylo/__init__.py,sha256=BNU2f9wzpkX2VngUFux7A7CvnBkzU78ziMXLLVNsJuA,1260
225
- biotite/sequence/phylo/nj.cpython-310-darwin.so,sha256=WVW074HVjHTpJRelzD-j1YjOlx1mCWvnnpuJ3Of6bsM,229029
226
- biotite/sequence/phylo/tree.cpython-310-darwin.so,sha256=Xp-SGhz7WnOAI2PNzdoU2d3CdHFXhpV0eHaLvqW9ruA,301543
227
- biotite/sequence/phylo/upgma.cpython-310-darwin.so,sha256=XL13MulXVQjkZCkYHVOof_q2Qh2oKDZ9lXPZ2fyFwyw,227576
228
- biotite/sequence/phylo/upgma.c,sha256=YQ-LbRQwpl0VRJl6tGIfwHyZvEBhbiMHwOOSAoa8B8E,1171727
229
- biotite/sequence/phylo/tree.c,sha256=alx0W6shIT2mqugSiQPT7CObaO2qzfRr84ALdAOpDlw,1210918
230
- biotite/structure/superimpose.py,sha256=l40pOHCl0ap-Y4lhvOMnIvnQvCjG-1Atq7arTrrjuNE,7630
231
- biotite/structure/bonds.c,sha256=zOU6iUJt4Q-yxu3pZgtr8z83jH118wsaR7QPcytVqag,2539214
233
+ biotite/sequence/phylo/nj.cpython-310-darwin.so,sha256=fq5fywIXustIN6W7gTG8U9EMBfhapJxjaRpfQJ05_5o,229045
234
+ biotite/sequence/phylo/tree.cpython-310-darwin.so,sha256=PzoEc0ZsWmMojtjpYwtYWY71IKUTndDrcBSzqywIZqI,301623
235
+ biotite/sequence/phylo/upgma.cpython-310-darwin.so,sha256=gHLzmk3bXF552gLvHIaVTSbhbu6PpbT2UH_TxUf-_W8,227592
236
+ biotite/sequence/phylo/upgma.c,sha256=cyaV7Bw0hB5JO5somDm9V_bxoAQa2JYD-d511jeTzSI,1173680
237
+ biotite/sequence/phylo/tree.c,sha256=YIfbVuw_0dOjxYYPS-Tkn6cAYbW5j8H10j-5ZGVYPfw,1221256
238
+ biotite/structure/superimpose.py,sha256=ml5-GE8F2ozVgKsbB1LEVfi4P2WhpNGrxnkQUXL6C-4,9084
239
+ biotite/structure/bonds.c,sha256=bdjlZXpjQzPahYiheQ55tSDNPHPzp81c7iGuTWl_dX4,2541260
232
240
  biotite/structure/chains.py,sha256=OdOLduRjKyP1GZvN_QjngWUC3hTYp3cMQuvyKuNRqj8,8807
233
241
  biotite/structure/box.py,sha256=svbwAtZdH-10hPRWOACID_OM8-C329NCB__P0hZNwW8,18742
234
- biotite/structure/celllist.cpython-310-darwin.so,sha256=ujNijun5g8kCdcfxjZeeQRlTcIzhtmlECMaE6Y-KXZw,338411
242
+ biotite/structure/celllist.cpython-310-darwin.so,sha256=xV12Z5nomhnuhAUrBF-pvYZRZ5fixEt1G0Nd84oqnvA,338427
235
243
  biotite/structure/error.py,sha256=rdNJb21D9kPTSsbF3-RQmMGegjc46jXnYEvLDIPIXJw,774
236
244
  biotite/structure/resutil.py,sha256=M7BkVAaBs3iHtFjopGQAxXbUrq_QSoeedhz7_z0ZDSg,5602
237
245
  biotite/structure/util.py,sha256=0iSSG46xH3JmW83QRYUSZpO_hR5Yn9TpAA8-jajZsi8,2258
238
- biotite/structure/celllist.c,sha256=2cH0i6-gjEkCh7oYafzyYDv0RsFZozIienTICB_WI-I,1573701
239
- biotite/structure/sasa.cpython-310-darwin.so,sha256=Pg4LXspJAAMh6fQDz5PkLkLT6yWUm_YqSZsqIyD2ho8,282903
240
- biotite/structure/__init__.py,sha256=C3-fw2vDNqLx4NlcajKgVGw39G_LXsCqBIgKQOUGPhc,5277
246
+ biotite/structure/celllist.c,sha256=QKAqp9S5fv8SE6OlmSEISsg9iy6muHnlifh04gBEf4E,1574606
247
+ biotite/structure/sasa.cpython-310-darwin.so,sha256=SIIIoGV4DTUMQnTOzqZUaho8lGqz2AYmDcoYJV_w0sY,282919
248
+ biotite/structure/__init__.py,sha256=DWftBI_fZjYUsHFdXhZI9TjqXtxHtkehwKq-Yh97iao,5277
241
249
  biotite/structure/mechanics.py,sha256=wQIK33d6NhJNTxqr6fSashXrlraLJC3-xcfCXM6ZPqA,2702
242
250
  biotite/structure/sse.py,sha256=8fa1-bRax5nZQKYRqr893ymn-Uv1SASg3yKx8HDi5dg,11963
243
- biotite/structure/charges.c,sha256=zspQLVBuNy_8oawsZNfB-Nmp_9YA-V2VTZQBGOXEAPU,1415892
244
- biotite/structure/charges.cpython-310-darwin.so,sha256=Juo3xFzppW4rf1w-qyaCAMfpvZUkXxhIwEMiBzSO790,283690
251
+ biotite/structure/charges.c,sha256=8yY73BwAEnzLB-5KwOTgii0eIRzj8KbODAxqNIjrCE8,1415318
252
+ biotite/structure/charges.cpython-310-darwin.so,sha256=_Dvf_2bsXD_9_n9oMvhqYmkpG7fAUy28xUbQw5CudF0,283498
245
253
  biotite/structure/density.py,sha256=TLKvLLbKRWDmH_A0mSFZeHkmbFb49lyyiL7Eeu-mLEg,4234
246
254
  biotite/structure/rdf.py,sha256=dS99s-n_N9zunYn5AQffXdEkapmUizGkugGLj9EDXBo,8059
247
255
  biotite/structure/transform.py,sha256=4xlUbN1JiLqw1Tc-qFKNWj2qBJb0jXadW_LuJWHcsQc,19767
248
256
  biotite/structure/geometry.py,sha256=yWHq7u50_TqqpFpG4ARVZNqCal9JFJWnRyYADdvgEYs,25256
249
- biotite/structure/molecules.py,sha256=2sYAjjU_ULvTZ_u4XxvqGNp9n1vuqW-Zqws-UAbCnKg,15515
250
- biotite/structure/filter.py,sha256=pZRlp_vhVmfqZUz_sVDyy3P3FIXim-ihsN4OvDDPYjE,19007
251
- biotite/structure/atoms.py,sha256=pc-Y8nzj3Fu48IzUMEA0TizgC9ugBLmI1RTZaxjfGEo,48016
252
- biotite/structure/bonds.cpython-310-darwin.so,sha256=9yVX3qPXSom60l0iLmIrjrSk7xorHku3YrZSw_DLYmc,599608
257
+ biotite/structure/molecules.py,sha256=_p09r_BmyMs6QcbxrZhGuT2qwR8oQrgHV2OMQ5W7U9g,15478
258
+ biotite/structure/filter.py,sha256=k0BpA7E980Yzyt5EE8KQTlyhs0XOud3G5jdq6mRzTwM,18716
259
+ biotite/structure/atoms.py,sha256=dyIp5l5QuMcmqDcimNU94NsLF3zqZtbyK4dN-w1OLoc,48016
260
+ biotite/structure/bonds.cpython-310-darwin.so,sha256=HtLXqJEBqJkI9JbsuqKkdXUI-j0Ep2E9khYLvKRgHjo,582888
253
261
  biotite/structure/pseudoknots.py,sha256=C8Id-1QyNBDuQNRCumspE_RoXuDNqJ-eFEimuzFdLIo,22380
254
- biotite/structure/basepairs.py,sha256=53VyDZc3cGTFVYkA_kWLqoGN913bBi5XolLGx1NhoqI,50297
255
- biotite/structure/sasa.c,sha256=bItnDF8mU_0gfpLOGBsEqcOPvghQh4OPnxLf8Ezn9n4,1324587
262
+ biotite/structure/basepairs.py,sha256=7TK4E-PXjt0GwE1JOE_AUfKmbrUY1IE9Tc6I9HLpb2s,50148
263
+ biotite/structure/sasa.c,sha256=T1WBb_dph5nY5hew8hbEp2_2wu5Dfp2lP0GB-U6BTds,1327338
256
264
  biotite/structure/integrity.py,sha256=9XndLoDGyOxB6l16to5mv4sGyUyRTb2PxD_hxxPk_ec,10061
257
265
  biotite/structure/compare.py,sha256=eBUGhlTSYApvoKoZ4LnMI5Ku2sB9aCeQ-V7Fcld4YiM,9502
258
266
  biotite/structure/hbond.py,sha256=zkJ1NLaOGhpwUz7WFd6ATihlJ44GGEZ9rRc9JRZ_PzE,15162
259
267
  biotite/structure/dotbracket.py,sha256=HEE79LzPeKNW2DXmg0VLfNCs8xmdc1Wlj8kebPep1H8,6837
260
- biotite/structure/residues.py,sha256=QBGBoQ79gr2DciZqpROfZSplAXfbnwwEMt5dif3FzXM,22557
268
+ biotite/structure/residues.py,sha256=dywbV7cTrJSNBAugC012gKrx_GrMZOcs7J76ojBM2AY,22370
261
269
  biotite/structure/io/trajfile.py,sha256=9hAnnKKycYXqEyaPoy3CxYJHC_PA9d_iUSmIstJfqFU,25694
262
- biotite/structure/io/__init__.py,sha256=Um44cupx_hfCNVNiEg-XY0KHe72CLSwBnyPBEpBSSkM,1121
263
- biotite/structure/io/ctab.py,sha256=RrjirTyVkw4A34OnPJUSFUDs3VqE6aPHQiZH7dVl078,4951
264
- biotite/structure/io/general.py,sha256=EJ6Nnx8wgMvc8yY1cyHGhJnW4WP6sUIwY9aznrajn5A,9714
270
+ biotite/structure/io/__init__.py,sha256=ROMPxtVLBLjvMWskQefRcSjeLlzAJP9H1lTWokp9oIc,1034
271
+ biotite/structure/io/ctab.py,sha256=qXu205XQrTAgebYUlN_Zl4hOjxllGlHRRF7jzLS_PB8,4935
272
+ biotite/structure/io/general.py,sha256=Q0L4OcwnBFp0DU964pH0vlVBbWYwPr6gYsORyqBIgvU,9343
265
273
  biotite/structure/io/dcd/__init__.py,sha256=APOO_JGG2CyUCLF4xCPmA-Ji79r4rAUaoSXajzkOEWg,387
266
274
  biotite/structure/io/dcd/file.py,sha256=JLAOdn4LkTfXqIEvbwtRHiXvRcJYEcFwr7kaIKOmC-g,2170
267
275
  biotite/structure/io/trr/__init__.py,sha256=ut-5WHHpk0n1Vs6zHhi4RnNHb3NQsLH8iVclcmkEbQE,358
268
276
  biotite/structure/io/trr/file.py,sha256=kE4pOoJJL6eKtPHcSRyirTK4Tsrv_mMJOhTY8gxidMM,1302
269
- biotite/structure/io/pdbx/convert.py,sha256=QUKjdYCbAJkBUIbEfcScnYOcqVwP1vvmE9ANh2SlNQI,42013
270
- biotite/structure/io/pdbx/__init__.py,sha256=izGiWxcgV6-LDCgd76C4FKIctSEzmctTIIxLmnmf29E,593
271
- biotite/structure/io/pdbx/file.py,sha256=BsMZiwOUW9w8LtTekYROa0u9TDXhPh-_Ud8_AEF2ARA,23823
277
+ biotite/structure/io/pdbx/legacy.py,sha256=01mS2bA5_GptHDpe_F7_6IyueQ8_tlgB_X_m9dRa694,8842
278
+ biotite/structure/io/pdbx/error.py,sha256=uY2i4nscyB2_QwbUv_-T8i9-3xrxogFUQf2B4U6C1wo,380
279
+ biotite/structure/io/pdbx/bcif.py,sha256=s5oQuDPHjayUJdu1vnVMJaFlBoWZQRkia3DKMrik0oo,20416
280
+ biotite/structure/io/pdbx/convert.py,sha256=jx0PXMReJ0DzRGFuE3-SrgmKgcQQmX6OBzpRdPyBAyI,54801
281
+ biotite/structure/io/pdbx/__init__.py,sha256=dVWVJMjgOljsjYcoXtpyIcWnCX4qd4cxoZArK8h64DU,735
282
+ biotite/structure/io/pdbx/encoding.cpython-310-darwin.so,sha256=RwEw74CAKFCIVV7cfLyYF52JFDCGPQEyuZjAL20QOsc,1157387
283
+ biotite/structure/io/pdbx/cif.py,sha256=29QXV5gMJSiI1-pJOY7QINbdNgDMYknW9PJ6GVRUdtM,32248
284
+ biotite/structure/io/pdbx/component.py,sha256=jBFoQ9X6Sj-rSi1wBud2JebjlcsUr-KmqSQpfkJ28xQ,8080
285
+ biotite/structure/io/pdbx/encoding.c,sha256=XPUviwhkPf-vmz0coPpaosk5Ke3w-uTzRNl2_49SAo0,4736141
272
286
  biotite/structure/io/tng/__init__.py,sha256=7JZqpfMSSlQItvolf_JGn2PRrAh1P_1AX1C18Oo5uww,356
273
287
  biotite/structure/io/tng/file.py,sha256=ulIW3m1wfSARQoNQwhE2TcLnDyWf7U3Q6_pN4tgSb9I,1302
274
- biotite/structure/io/npz/__init__.py,sha256=CuAuokkuPZygtR-sL385cEGdPqnsS1JMq8xU6EIr05E,637
275
- biotite/structure/io/npz/file.py,sha256=AysY0mFoWHXGTkYW_j6RknXulaGs-TDN-guM3eVVG20,4964
288
+ biotite/structure/io/npz/__init__.py,sha256=WBUmxbb3qaFjLdAQwzYhVI_vh8w7gMZRlcpNZBYBc0s,736
289
+ biotite/structure/io/npz/file.py,sha256=5xrKj7raPsby5U7sIyeilfsbCx0w_bcR8QG8anE2eQQ,4958
276
290
  biotite/structure/io/xtc/__init__.py,sha256=nHU9y_f75FMJpnY9Gngu1J39dfbXF3fZsSulvpWK7Qk,356
277
291
  biotite/structure/io/xtc/file.py,sha256=OTsBk_xscSgcThKrAYYjYqTDw-g4yM5WBr2PKBhnWS0,1298
278
292
  biotite/structure/io/pdbqt/convert.py,sha256=IihHFIwMJuBrdGjZ6NRID8O8Ti-3QgILX184rMaYHzY,4027
279
293
  biotite/structure/io/pdbqt/__init__.py,sha256=n0-GSBidNVDNOsTo3oHGSv6agAFn2_duOvwykSX3mlc,440
280
- biotite/structure/io/pdbqt/file.py,sha256=BwnoH45PG794UlZuv2ORt0k2zFBXWGoTxVtishaOhE4,25832
294
+ biotite/structure/io/pdbqt/file.py,sha256=mSeaAXfgYH0SDKTiIH-TvKgMbJeWkoUbqngE7RHKu7Q,26399
281
295
  biotite/structure/io/netcdf/__init__.py,sha256=Vzr56ymoVeSlXqEF-nhPJFPBjxSFWuyD9uy8QpzhFyU,349
282
296
  biotite/structure/io/netcdf/file.py,sha256=AW2TX7qubiDqI27Q9zknC4zE5mrZetjk8U6QNhqUnpg,2156
283
297
  biotite/structure/io/gro/__init__.py,sha256=lY39nljfVlWbHsR4RKAM3rRJzZdQliRevVzZM1MT-eY,407
@@ -285,41 +299,37 @@ biotite/structure/io/gro/file.py,sha256=TiPUGb1_kMLGtkKO_7xXYmZ6v7KYcLzgyDlk6OkL
285
299
  biotite/structure/io/mol/convert.py,sha256=BMMq4W2765XwglI0RxDSDUbpk_fuQNPmpsBbGWGaNMQ,1305
286
300
  biotite/structure/io/mol/__init__.py,sha256=DT2L1kMbZeUKt6OgWOaI9pn1h5sP3qkXcdRM-qMdRXY,541
287
301
  biotite/structure/io/mol/file.py,sha256=ljV4rpbUv7o9lUvWxT06HmNs9wbfT4a-QrAWYzDDF-Q,7388
288
- biotite/structure/io/pdb/hybrid36.c,sha256=3iNDL2kdy81M3X7PXbA-cBFzUdx7Ur9WDNWSCbWYf60,1108511
302
+ biotite/structure/io/pdb/hybrid36.c,sha256=QnVrzSl-4F2C33KonKXRql1jPMhbywHQVUoMwwCwgfM,1110875
289
303
  biotite/structure/io/pdb/convert.py,sha256=jysm2PrrfyzYy3ZmkIiMuOEoaSdID5qDkJ7LHI3WavA,10659
290
- biotite/structure/io/pdb/__init__.py,sha256=ek2Ri_MTbEmrdKa5zA954NOVAJs0bIX16y-Fa-ujk9k,722
291
- biotite/structure/io/pdb/file.py,sha256=FrIu_jju8C5Bc-DDIUlhdJskPfhmIxL75Bp-Hqh3JzE,46499
292
- biotite/structure/io/pdb/hybrid36.cpython-310-darwin.so,sha256=f47hfNYWrjDorGdoYvevVO_2PKsNYVAXQVtJheq6gz0,211387
293
- biotite/structure/io/mmtf/convertfile.cpython-310-darwin.so,sha256=2mE8lkY9zc7-6lDJKISA0fsNE6kWLGJ-7EIZYjc8R-k,355310
294
- biotite/structure/io/mmtf/encode.cpython-310-darwin.so,sha256=OsaVJWvVyBKaIfKKQN9bZkJaKo6WiTxqEe_PqPl1PrA,261977
295
- biotite/structure/io/mmtf/decode.c,sha256=OiEaZE6DFXPejSM3fmKVLP9mKmgQGLiTdjo6lW2nOJ0,1372780
296
- biotite/structure/io/mmtf/__init__.py,sha256=tv2KbFnn4RCFR6Do1VgHddEzx1n7mnrqPimUQ60iQF0,587
297
- biotite/structure/io/mmtf/encode.c,sha256=DdhIu8D-69K8Qg_cq1CpsAp4R6ssiN4hmtyCN62Np6o,1330274
298
- biotite/structure/io/mmtf/convertarray.c,sha256=yQMSxjFZGM1VWm8JT5dG9VzNs6PSHpJvtAhdGsoCl5M,668453
299
- biotite/structure/io/mmtf/file.py,sha256=AVm6DqeQcTzpVQnFWRz752XWcAHErXkQ3s7GlxpVPgc,6854
300
- biotite/structure/io/mmtf/convertarray.cpython-310-darwin.so,sha256=QqevaKA5OAbW-CwSRJz20lEy_F_ziVs1Ui4hBK98YRI,194591
304
+ biotite/structure/io/pdb/__init__.py,sha256=2qtLwVQu10AZhk-DUAqcIbvofyIC8BKGh4Gk9b_Ha70,732
305
+ biotite/structure/io/pdb/file.py,sha256=7lbstiopNSpu-lyDHPN7MDtxpBRX014Ag5pIHoOuhc4,46016
306
+ biotite/structure/io/pdb/hybrid36.cpython-310-darwin.so,sha256=u7b0Wg4l-FSku2rAqIdg4ig_0EcqylFOy1PcWHEmzeU,211467
307
+ biotite/structure/io/mmtf/convertfile.cpython-310-darwin.so,sha256=r4sIhwa4UU7ZWPDD5rmHiqsTUnm0mlsf7AfRgYjv368,355326
308
+ biotite/structure/io/mmtf/encode.cpython-310-darwin.so,sha256=-Jr8QCMxlpv3nDDCnIfrNnfHIaZedxdKncBoL2v4NPU,261993
309
+ biotite/structure/io/mmtf/decode.c,sha256=a9wDozlJqFNF3_af58cIbWofKkgfMMKejdV01ZW_xnc,1384593
310
+ biotite/structure/io/mmtf/__init__.py,sha256=5kmc5agVc7eCUhtA0DCKIj7eR8qlvaqIIaJXUHFnc6k,662
311
+ biotite/structure/io/mmtf/encode.c,sha256=ZOIF-v-0fogv4qLOWpN7vu2VqzCIipL3i5svYp2EOUg,1332417
312
+ biotite/structure/io/mmtf/convertarray.c,sha256=t0E2biFauJbYy0qaoWlWaLpVOLUzNubimsZ3JU5FoBw,674749
313
+ biotite/structure/io/mmtf/file.py,sha256=mMNUCXx6cKptqqcfteE_2i-e_PPwDAyVFLebZnvoQS4,6946
314
+ biotite/structure/io/mmtf/convertarray.cpython-310-darwin.so,sha256=72aGk0SMkq-7AlzCgLQHAyHvcQI57vXMlcKDKRoMSIQ,194671
301
315
  biotite/structure/io/mmtf/assembly.py,sha256=HYVy2Knir1TqWT_NfvrmUmR2UX8eFNzVmQImSLZP-7w,8184
302
- biotite/structure/io/mmtf/decode.cpython-310-darwin.so,sha256=G9-dtkIBtqIKKOemedBZx5KV2uCcTwiIgy7VbL1PjU4,282089
303
- biotite/structure/io/mmtf/convertfile.c,sha256=zdwA7HddVPrBSWHEkgwRhQMQFPbAC_3HJ9VasgZuHsM,1551898
304
- biotite/structure/info/misc.py,sha256=6xMO1yaWH2JxPeHqlDqC2SxAwKW9oVXE2omYHwUDdPk,2173
305
- biotite/structure/info/carbohydrates.py,sha256=GQnIVS_hRK0zrlZ_o_xZD0TpNGPrH3_-Jv7hLXX_omI,1248
316
+ biotite/structure/io/mmtf/decode.cpython-310-darwin.so,sha256=gdD3OcXOoGry1yCazq_rLf1acNrR6qk4n9tbyMNgY5o,282169
317
+ biotite/structure/io/mmtf/convertfile.c,sha256=3pWiCXYr_vErXMR-KZnM10rhBYqsrybq5LqoYOOHcjQ,1553893
318
+ biotite/structure/info/misc.py,sha256=MLYXpMlZRig9-gk-8fy5k10H7T0stpKnQ3h9uDMxNMA,1841
306
319
  biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
307
- biotite/structure/info/amino_acids.py,sha256=IDdvU79JMwLNwHA0fjoI4pVapbzTG1U5dqamrV4k9W0,1446
308
- biotite/structure/info/amino_acids.json,sha256=W8QthUORbYGPBz8Y-xC6sfKE8hqKkk7PTu_6mm3OMNQ,12433
309
- biotite/structure/info/nucleotides.json,sha256=Vp3vLEpNEgo1MLTRU3SDntxJQLKu3e3W1uIMm92VYLA,6104
310
- biotite/structure/info/residue_masses.msgpack,sha256=KDZ4r82AcecK_CCD64bEnTZK3rur5Jq_fSBaiB3rB1M,459118
311
- biotite/structure/info/residues.msgpack,sha256=yt9Nd0G3mnTorAfrNHAz34ZhgsvGwGWYRgG81Y3nuv4,73230917
312
- biotite/structure/info/__init__.py,sha256=LnAvRskhphES4yfOT98EwcGWNKsH4TGkJqKTsUbEaPI,829
320
+ biotite/structure/info/__init__.py,sha256=k57tfM03apKfR3UlJMoDXZHS6jilhkeni1DoQa_nWLs,702
321
+ biotite/structure/info/groups.py,sha256=RTJvSclZGxQkcsOH6ML43QWCBkeUQKE4eNSge8MHgPE,2043
313
322
  biotite/structure/info/radii.py,sha256=GlTPOCvtqGy7PQJlTOZA57PXg7xPLwKYEy0wcrCmiEc,5648
314
- biotite/structure/info/standardize.py,sha256=8LET7mOuNFCrLVMXjlHhj15ZDqzixZvGSw2TqxI_x-g,7573
315
- biotite/structure/info/bonds.py,sha256=ugZitgA4Ajj3RcUrum4H_ZuqVcotr2-Df5vxkdVdPvo,6089
316
- biotite/structure/info/masses.py,sha256=XKRyNxCZi4kESCXi3w5o1EYrhoPUSkIfkmR73lWL6v4,4546
317
- biotite/structure/info/carbohydrates.json,sha256=JfzMX_FwOBhzH3E0XEvJVjCP80d-bEjOiIFtgJpNd9U,8962
318
- biotite/structure/info/nucleotides.py,sha256=exs3qlk_CB65EXvoCzDtL2ZdF2s5QboT3lJuCuMabjU,1274
319
- biotite/structure/info/atoms.py,sha256=y_N-4O6QYDyU2FEFlEDjGSRQup6zByDgguBpbyoq8_E,3490
320
- biotite/structure/info/link_types.msgpack,sha256=EO5H3hQFNuLs1tHft9zZf3HpN0-3O_XM3QA3HIY73PA,582272
321
- biotite/structure/info/residue_names.msgpack,sha256=p8uLuHBVko6pbq-GDjqLIZMtc7_XEY1NUFZQt4YL-yA,2952002
322
- biotite/structure/info/intra_bonds.msgpack,sha256=gdf7MGumNkEg6ToZnyI2_zL6z6gLVyi6k0kP5eFaDIo,16338340
323
+ biotite/structure/info/standardize.py,sha256=AaYn7mx6Y6NylkeOg1kIpyNoI-KrWbGSXXu_GEcSAZw,7772
324
+ biotite/structure/info/bonds.py,sha256=h32B-0-4zEs9e_ZrGyIXP_Rp4IXf6u_Cm0k-DgbC5pI,4644
325
+ biotite/structure/info/masses.py,sha256=dnZbg4k_89SuTwFUulyTKAL6Mnk4POPMIVhJLl5xswA,4489
326
+ biotite/structure/info/atoms.py,sha256=3a_Cp7sRKwRq6rzl1uvX9Ak1fzTzLdZdJdx4zXx_1JM,2427
327
+ biotite/structure/info/ccd.py,sha256=26BnKJEGH6Bhmvkll_ev6HSCIi0hNx_cs_N9hqNXP-4,2754
328
+ biotite/structure/info/ccd/components.bcif,sha256=2exbF1n0jReJ3JTI9YYPzjxCtrIu3Z6myll-w3JOQRU,35086693
329
+ biotite/structure/info/ccd/amino_acids.txt,sha256=AC0v3vCBdzSzC0nQZ_jCXGviuBi_9PHUGqLe_regyMY,6591
330
+ biotite/structure/info/ccd/README.rst,sha256=sfFRGesjpATIp5S8kiEV7cr-Jb51fWLGT4KypmzsoPM,342
331
+ biotite/structure/info/ccd/carbohydrates.txt,sha256=2rAtgJ4vu_SPY_3dZOZkioBXs4lDPPY8FKfINPStFmk,4532
332
+ biotite/structure/info/ccd/nucleotides.txt,sha256=x02Y7eWP4JiR-Fw5qXltSUd-UbTQxNWuQUjr67f46RM,3132
323
333
  biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
324
334
  biotite/structure/graphics/rna.py,sha256=bhIHoB_9sFuZPrHQ8qQnToRiTCfgQ7JLVNIdsQVvkw8,11888
325
335
  biotite/structure/graphics/atoms.py,sha256=nMhbmnjytxEDkxTTm2wHM2dObSw3izjvRbqssCW876E,8171
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: bdist_wheel (0.41.2)
2
+ Generator: bdist_wheel (0.43.0)
3
3
  Root-Is-Purelib: false
4
4
  Tag: cp310-cp310-macosx_11_0_arm64
5
5