bioregistry 0.13.17__py3-none-any.whl → 0.13.19__py3-none-any.whl

bioregistry/external/obofoundry/processed.json

@@ -541,6 +541,7 @@
     "deprecated": false,
     "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
     "domain": "chemistry and biochemistry",
+    "download.json": "http://purl.obolibrary.org/obo/chebi.json",
     "download.obo": "http://purl.obolibrary.org/obo/chebi.obo",
     "download.owl": "http://purl.obolibrary.org/obo/chebi.owl",
     "homepage": "http://www.ebi.ac.uk/chebi",
@@ -1369,7 +1370,7 @@
         "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)"
       }
     ],
-    "repository": "https://github.com/obophenotype/mouse-anatomy-ontology"
+    "repository": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology"
   },
   "envo": {
     "appears_in": [
@@ -2560,12 +2561,12 @@
     "domain": "anatomy and development",
     "download.obo": "http://purl.obolibrary.org/obo/ma.obo",
     "download.owl": "http://purl.obolibrary.org/obo/ma.owl",
-    "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
+    "homepage": "https://github.com/obophenotype/adult-mouse-anatomy-ontology",
     "license": "CC BY 4.0",
     "license.url": "https://creativecommons.org/licenses/by/4.0/",
     "name": "Mouse adult gross anatomy",
     "preferredPrefix": "MA",
-    "repository": "https://github.com/obophenotype/mouse-anatomy-ontology"
+    "repository": "https://github.com/obophenotype/adult-mouse-anatomy-ontology"
   },
   "mamo": {
     "deprecated": true,
@@ -5115,6 +5116,7 @@
     "deprecated": false,
     "description": "Metrical units for use in conjunction with PATO",
     "domain": "phenotype",
+    "download.json": "http://purl.obolibrary.org/obo/uo.json",
     "download.obo": "http://purl.obolibrary.org/obo/uo.obo",
     "download.owl": "http://purl.obolibrary.org/obo/uo.owl",
     "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",

bioregistry/external/ols/processed.json

@@ -19,6 +19,16 @@
     "version": "2023-09-20",
     "version.iri": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl"
   },
+  "aeo": {
+    "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
+    "download_owl": "http://purl.obolibrary.org/obo/aeo.owl",
+    "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
+    "name": "Anatomical Entity Ontology",
+    "prefix": "aeo",
+    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
+    "version": "2022-09-13",
+    "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2022-09-13/aeo.owl"
+  },
   "afo": {
     "description": "Allotrope Merged Ontology Suite",
     "name": "Allotrope Merged Ontology Suite",
@@ -75,8 +85,8 @@
     "name": "Ascomycete Phenotype Ontology (APO)",
     "prefix": "apo",
     "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
-    "version": "2025-12-19",
-    "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
+    "version": "2026-01-12",
+    "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2026-01-12/apo.owl"
   },
   "apollo_sv": {
     "description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.",
@@ -353,8 +363,8 @@
     "name": "Clinical measurement ontology",
     "prefix": "cmo",
     "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-    "version": "2.260",
-    "version.iri": "http://purl.obolibrary.org/obo/cmo/2.260/cmo.owl"
+    "version": "2.263",
+    "version.iri": "http://purl.obolibrary.org/obo/cmo/2.263/cmo.owl"
   },
   "cmpo": {
     "contact": "jupp@ebi.ac.uk",
@@ -528,8 +538,8 @@
     "name": "Drosophila Phenotype Ontology",
     "prefix": "dpo",
     "tracker": "https://github.com/FlyBase/drosophila-phenotype-ontology/issues",
-    "version": "2025-10-17",
-    "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2025-10-17/dpo.owl"
+    "version": "2026-01-13",
+    "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2026-01-13/dpo.owl"
   },
   "dron": {
     "description": "An ontology to support comparative effectiveness researchers studying claims data.",
@@ -578,8 +588,8 @@
     "name": "Evidence & Conclusion Ontology (ECO)",
     "prefix": "eco",
     "tracker": "https://github.com/evidenceontology/evidenceontology/issues",
-    "version": "2025-06-23",
-    "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2025-06-23/eco.owl"
+    "version": "2026-01-15",
+    "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2026-01-15/eco.owl"
   },
   "ecocore": {
     "description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.",
@@ -620,8 +630,8 @@
     "name": "Experimental Factor Ontology",
     "prefix": "efo",
     "uri_format": "http://www.ebi.ac.uk/efo/EFO_$1",
-    "version": "3.85.0",
-    "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.85.0/efo.owl"
+    "version": "3.86.0",
+    "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.86.0/efo.owl"
   },
   "ehdaa2": {
     "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
@@ -633,13 +643,20 @@
     "version": "2024-01-11",
     "version.iri": "http://purl.obolibrary.org/obo/ehdaa2/releases/2024-01-11/ehdaa2.owl"
   },
+  "emap": {
+    "description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).",
+    "download_owl": "http://purl.obolibrary.org/obo/emap.owl",
+    "homepage": "http://emouseatlas.org",
+    "name": "Mouse gross anatomy and development, timed",
+    "prefix": "emap"
+  },
   "emapa": {
     "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
     "download_owl": "http://purl.obolibrary.org/obo/emapa.owl",
     "homepage": "http://www.informatics.jax.org/expression.shtml",
     "name": "Mouse Developmental Anatomy Ontology",
     "prefix": "emapa",
-    "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
+    "tracker": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology/issues",
     "version": "2025-12-30",
     "version.iri": "http://purl.obolibrary.org/obo/emapa/releases/2025-12-30/emapa.owl"
   },
@@ -735,8 +752,8 @@
     "name": "Biological Imaging Methods Ontology",
     "prefix": "fbbi",
     "tracker": "https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues",
-    "version": "2020-11-06",
-    "version.iri": "http://purl.obolibrary.org/obo/fbbi/releases/2020-11-06/fbbi.owl"
+    "version": "2026-01-23",
+    "version.iri": "http://purl.obolibrary.org/obo/fbbi/releases/2026-01-23/fbbi.owl"
   },
   "fbbt": {
     "description": "An ontology representing the gross anatomy of Drosophila melanogaster.",
@@ -745,8 +762,8 @@
     "name": "Drosophila gross anatomy",
     "prefix": "fbbt",
     "tracker": "http://purl.obolibrary.org/obo/fbbt/tracker",
-    "version": "2025-10-16",
-    "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2025-10-16/fbbt.owl"
+    "version": "2026-01-13",
+    "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2026-01-13/fbbt.owl"
   },
   "fbcv": {
     "description": "A structured controlled vocabulary used for various aspects of annotation by FlyBase.",
@@ -755,8 +772,8 @@
     "name": "FlyBase Controlled Vocabulary",
     "prefix": "fbcv",
     "tracker": "https://github.com/FlyBase/flybase-controlled-vocabulary/issues",
-    "version": "2025-10-17",
-    "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2025-10-17/fbcv.owl"
+    "version": "2026-01-13",
+    "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2026-01-13/fbcv.owl"
   },
   "fbdv": {
     "description": "A structured controlled vocabulary of the development of Drosophila melanogaster.",
@@ -765,8 +782,8 @@
     "name": "Drosophila development",
     "prefix": "fbdv",
     "tracker": "http://purl.obolibrary.org/obo/fbdv/tracker",
-    "version": "2025-10-16",
-    "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2025-10-16/fbdv.owl"
+    "version": "2026-01-13",
+    "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2026-01-13/fbdv.owl"
   },
   "flopo": {
     "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
@@ -822,8 +839,8 @@
     "name": "Fission Yeast Phenotype Ontology (FYPO)",
     "prefix": "fypo",
     "tracker": "https://github.com/pombase/fypo/issues",
-    "version": "2025-09-27",
-    "version.iri": "http://purl.obolibrary.org/obo/fypo/releases/2025-09-27/fypo.owl"
+    "version": "2026-01-16",
+    "version.iri": "http://purl.obolibrary.org/obo/fypo/releases/2026-01-16/fypo.owl"
   },
   "gallont": {
     "description": "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls.",
@@ -835,6 +852,14 @@
     "version": "2024-04-19",
     "version.iri": "http://purl.obolibrary.org/obo/gallont/releases/2024-04-19/gallont.owl"
   },
+  "gaz": {
+    "description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
+    "download_owl": "http://purl.obolibrary.org/obo/gaz.owl",
+    "homepage": "http://environmentontology.github.io/gaz/",
+    "name": "Gazetteer",
+    "prefix": "gaz",
+    "tracker": "https://github.com/EnvironmentOntology/gaz/issues"
+  },
   "gecko": {
     "description": "An ontology to represent genomics cohort attributes.",
     "download_owl": "http://purl.obolibrary.org/obo/gecko.owl",
@@ -971,7 +996,7 @@
     "name": "HUGO Gene Nomenclature Committee",
     "prefix": "hgnc",
     "uri_format": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1",
-    "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2025-10-07/hgnc.ofn"
+    "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2026-01-06/hgnc.ofn"
   },
   "hgnc.genegroup": {
     "contact": "elspeth@genenames.org",
@@ -990,8 +1015,8 @@
     "name": "Human Phenotype Ontology",
     "prefix": "hp",
     "tracker": "https://github.com/obophenotype/human-phenotype-ontology/issues/",
-    "version": "2025-11-24",
-    "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2025-11-24/hp-international.owl"
+    "version": "2026-01-08",
+    "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2026-01-08/hp-international.owl"
   },
   "hsapdv": {
     "description": "Life cycle stages for Human",
@@ -1134,6 +1159,16 @@
     "prefix": "lipidmaps",
     "uri_format": "https://www.lipidmaps.org/rdf/$1"
   },
+  "ma": {
+    "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
+    "download_owl": "http://purl.obolibrary.org/obo/ma.owl",
+    "homepage": "https://github.com/obophenotype/adult-mouse-anatomy-ontology",
+    "name": "Mouse adult gross anatomy",
+    "prefix": "ma",
+    "tracker": "https://github.com/obophenotype/adult-mouse-anatomy-ontology/issues",
+    "version": "2026-01-09",
+    "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2026-01-09/ma.owl"
+  },
   "mamo": {
     "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
     "download_rdf": "https://raw.githubusercontent.com/EBISPOT/mamo/main/mamo.rdf",
@@ -1150,8 +1185,8 @@
     "name": "Medical Action Ontology",
     "prefix": "maxo",
     "tracker": "https://github.com/monarch-initiative/MAxO/issues",
-    "version": "2025-04-24",
-    "version.iri": "http://purl.obolibrary.org/obo/maxo/releases/2025-04-24/maxo.owl"
+    "version": "2026-01-15",
+    "version.iri": "http://purl.obolibrary.org/obo/maxo/releases/2026-01-15/maxo.owl"
   },
   "mba": {
     "contact": "cellsemantics@gmail.com",
@@ -1354,8 +1389,8 @@
     "name": "MHC Restriction Ontology",
     "prefix": "mro",
     "tracker": "https://github.com/IEDB/MRO/issues",
-    "version": "2025-10-29",
-    "version.iri": "http://purl.obolibrary.org/obo/mro/2025-10-29/mro.owl"
+    "version": "2026-01-13",
+    "version.iri": "http://purl.obolibrary.org/obo/mro/2026-01-13/mro.owl"
   },
   "ms": {
     "contact": "psidev-ms-vocab@lists.sourceforge.net",
@@ -1365,8 +1400,8 @@
     "name": "Mass spectrometry ontology",
     "prefix": "ms",
     "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-    "version": "4.1.223",
-    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
+    "version": "4.1.231",
+    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.231/ms.owl"
   },
   "msio": {
     "description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
@@ -1819,8 +1854,8 @@
     "name": "Pathogen Host Interactions Phenotype Ontology",
     "prefix": "phipo",
     "tracker": "https://github.com/PHI-base/phipo/issues",
-    "version": "2025-10-29",
-    "version.iri": "http://purl.obolibrary.org/obo/phipo/releases/2025-10-29/phipo.owl"
+    "version": "2026-01-26",
+    "version.iri": "http://purl.obolibrary.org/obo/phipo/releases/2026-01-26/phipo.owl"
   },
   "plana": {
     "description": "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.",
@@ -1849,8 +1884,8 @@
     "name": "Plant Ontology",
     "prefix": "po",
     "tracker": "https://github.com/Planteome/plant-ontology/issues",
-    "version": "2025-10-31",
-    "version.iri": "http://purl.obolibrary.org/obo/po/releases/2025-10-31/po.owl"
+    "version": "2026-01-09",
+    "version.iri": "http://purl.obolibrary.org/obo/po/releases/2026-01-09/po.owl"
   },
   "poro": {
     "description": "An ontology describing the anatomical structures and characteristics of Porifera (sponges)",
@@ -1883,6 +1918,16 @@
     "version": "72.0",
     "version.iri": "http://purl.obolibrary.org/obo/pr/72.0/pr.owl"
   },
+  "prefer": {
+    "contact": "txellmgsol@gmail.com",
+    "description": "An ontology for PREcision FERmentation.",
+    "download_owl": "https://github.com/Multiomics-Analytics-Group/prefer_ontology/releases/latest/download/prefer.owl",
+    "homepage": "https://github.com/Multiomics-Analytics-Group/prefer_ontology",
+    "name": "PREFER Ontology",
+    "prefix": "prefer",
+    "uri_format": "http://purl.obolibrary.org/obo/PREFER_$1",
+    "version.iri": "http://purl.obolibrary.org/obo/prefer/releases/2026-01-08/prefer.owl"
+  },
   "pride": {
     "description": "Proteomics Identification Database Ontology, terms describing proteomics data and experimental metadata",
     "download_owl": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.owl",
@@ -1890,8 +1935,8 @@
     "name": "Proteomics Identification Database Ontology",
     "prefix": "pride",
     "uri_format": "http://purl.obolibrary.org/obo/PRIDE_$1",
-    "version": "2025-02-17",
-    "version.iri": "http://purl.obolibrary.org/obo/pride/releases/2025-02-17/pride.owl"
+    "version": "2026-01-17",
+    "version.iri": "http://purl.obolibrary.org/obo/pride/releases/2026-01-17/pride.owl"
   },
   "probonto": {
     "contact": "probonto.dev@gmail.com",
@@ -1935,8 +1980,8 @@
     "name": "Plant Stress Ontology",
     "prefix": "pso",
     "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
-    "version": "2025-12-16",
-    "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
+    "version": "2026-01-08",
+    "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2026-01-08/pso.owl"
   },
   "pw": {
     "description": "A controlled vocabulary for annotating gene products to pathways.",
@@ -1945,8 +1990,8 @@
     "name": "Pathway ontology",
     "prefix": "pw",
     "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
-    "version": "7.96",
-    "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
+    "version": "7.97",
+    "version.iri": "http://purl.obolibrary.org/obo/pw/7.97/pw.owl"
   },
   "rbo": {
     "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
@@ -1955,8 +2000,8 @@
     "name": "Radiation Biology Ontology",
     "prefix": "rbo",
     "tracker": "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues",
-    "version": "2025-12-11",
-    "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-12-11/rbo.owl"
+    "version": "2026-01-15",
+    "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2026-01-15/rbo.owl"
   },
   "rdfs": {
     "name": "The RDF Schema vocabulary (RDFS)",
@@ -1998,8 +2043,8 @@
     "prefix": "ro",
     "tracker": "https://github.com/oborel/obo-relations/issues",
     "uri_format": "http://purl.obolibrary.org/obo/BFO_0000050$1",
-    "version": "2025-06-24",
-    "version.iri": "http://purl.obolibrary.org/obo/ro/releases/2025-06-24/ro.owl"
+    "version": "2025-12-17",
+    "version.iri": "http://purl.obolibrary.org/obo/ro/releases/2025-12-17/ro.owl"
   },
   "ror": {
     "contact": "info@ror.org",
@@ -2008,7 +2053,7 @@
     "name": "Research Organization Registry",
     "prefix": "ror",
     "uri_format": "https://ror.org/$1",
-    "version.iri": "https://w3id.org/biopragmatics/resources/ror/1.36/ror.ofn"
+    "version.iri": "https://w3id.org/biopragmatics/resources/ror/2.0/ror.ofn"
   },
   "rs": {
     "description": "Ontology of rat strains",
@@ -2017,8 +2062,8 @@
     "name": "Rat Strain Ontology",
     "prefix": "rs",
     "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues",
-    "version": "6.264",
-    "version.iri": "http://purl.obolibrary.org/obo/rs/6.264/rs.owl"
+    "version": "6.266",
+    "version.iri": "http://purl.obolibrary.org/obo/rs/6.266/rs.owl"
   },
   "rxno": {
     "contact": "chemistry-ontologies@googlegroups.com",
@@ -2250,8 +2295,8 @@
     "name": "Plant Trait Ontology",
     "prefix": "to",
     "tracker": "https://github.com/Planteome/plant-trait-ontology/issues",
-    "version": "2025-11-07",
-    "version.iri": "http://purl.obolibrary.org/obo/to/releases/2025-11-07/to.owl"
+    "version": "2026-01-14",
+    "version.iri": "http://purl.obolibrary.org/obo/to/releases/2026-01-14/to.owl"
   },
   "trans": {
     "description": "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.",
@@ -2312,8 +2357,8 @@
     "name": "Units of measurement ontology",
     "prefix": "uo",
     "tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues",
-    "version": "2023-05-25",
-    "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2023-05-25/uo.owl"
+    "version": "2026-01-16",
+    "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2026-01-16/uo.owl"
   },
   "upa": {
     "description": "A manually curated resource for the representation and annotation of metabolic pathways",
@@ -2352,8 +2397,8 @@
     "name": "Vaccine Ontology",
     "prefix": "vo",
     "tracker": "https://github.com/vaccineontology/VO/issues",
-    "version": "2025-12-03",
-    "version.iri": "http://purl.obolibrary.org/obo/vo/releases/2025-12-03/vo.owl"
+    "version": "2026-01-23",
+    "version.iri": "http://purl.obolibrary.org/obo/vo/releases/2026-01-23/vo.owl"
   },
   "vsao": {
     "description": "Vertebrate skeletal anatomy ontology.",
@@ -2371,8 +2416,8 @@
     "name": "The Vertebrate Trait Ontology",
     "prefix": "vt",
     "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-    "version": "2025-12-02",
-    "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-12-02/vt.owl"
+    "version": "2026-01-21",
+    "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2026-01-21/vt.owl"
   },
   "vto": {
     "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.",
@@ -2441,8 +2486,8 @@
     "name": "Experimental condition ontology",
     "prefix": "xco",
     "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues",
-    "version": "4.222",
-    "version.iri": "http://purl.obolibrary.org/obo/xco/4.222/xco.owl"
+    "version": "4.225",
+    "version.iri": "http://purl.obolibrary.org/obo/xco/4.225/xco.owl"
   },
   "xlmod": {
     "contact": "psidev-ms-vocab@lists.sourceforge.net",