bioregistry 0.13.17__py3-none-any.whl → 0.13.19__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioregistry/analysis/paper_ranking.py +2 -0
- bioregistry/data/bioregistry.json +413 -199
- bioregistry/data/curated_papers.tsv +2 -0
- bioregistry/external/aberowl/processed.json +182 -66
- bioregistry/external/bartoc/processed.json +61 -28
- bioregistry/external/biolink/processed.json +3 -0
- bioregistry/external/bioportal/agroportal.json +106 -169
- bioregistry/external/bioportal/bioportal.json +251 -60
- bioregistry/external/bioportal/ecoportal.json +47 -0
- bioregistry/external/fairsharing/processed.json +37 -30
- bioregistry/external/go/processed.json +1 -0
- bioregistry/external/integbio/__init__.py +3 -3
- bioregistry/external/integbio/processed.json +28 -27
- bioregistry/external/lov/processed.json +26 -2
- bioregistry/external/obofoundry/processed.json +5 -3
- bioregistry/external/ols/processed.json +102 -57
- bioregistry/external/re3data/processed.json +142 -48
- bioregistry/external/uniprot/processed.json +54 -54
- bioregistry/version.py +1 -1
- {bioregistry-0.13.17.dist-info → bioregistry-0.13.19.dist-info}/METADATA +7 -7
- {bioregistry-0.13.17.dist-info → bioregistry-0.13.19.dist-info}/RECORD +23 -23
- {bioregistry-0.13.17.dist-info → bioregistry-0.13.19.dist-info}/WHEEL +2 -2
- {bioregistry-0.13.17.dist-info → bioregistry-0.13.19.dist-info}/entry_points.txt +0 -0
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@@ -24,6 +24,7 @@ import logging
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import textwrap
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from collections import defaultdict
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from pathlib import Path
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from time import sleep
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from typing import TYPE_CHECKING, NamedTuple, TypeAlias, cast
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import click
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@@ -213,6 +214,7 @@ def _search(
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):
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if pubmed_id not in pubmed_ids_to_filter:
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pubmed_to_terms[pubmed_id].append(term)
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sleep(1)
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return dict(pubmed_to_terms)
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